Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53316.t1 | XP_013465083.1 | 95.3 | 171 | 8 | 0 | 15 | 185 | 1 | 171 | 1.50E-94 | 355.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53316.t1 | Q6R567 | 43.1 | 174 | 84 | 6 | 25 | 185 | 7 | 178 | 2.0e-31 | 137.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53316.t1 | A0A072VCD2 | 95.3 | 171 | 8 | 0 | 15 | 185 | 1 | 171 | 1.1e-94 | 355.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050623 | MS.gene53316 | 0.816336 | 5.83E-52 | -1.69E-46 |
MS.gene050787 | MS.gene53316 | -0.812314 | 4.51E-51 | -1.69E-46 |
MS.gene055815 | MS.gene53316 | 0.931198 | 5.38E-94 | -1.69E-46 |
MS.gene055816 | MS.gene53316 | 0.93356 | 1.56E-95 | -1.69E-46 |
MS.gene056069 | MS.gene53316 | 0.834778 | 2.46E-56 | -1.69E-46 |
MS.gene059033 | MS.gene53316 | 0.808743 | 2.67E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene36072 | MS.gene53316 | PPI |
MS.gene53316 | MS.gene34211 | PPI |
MS.gene53316 | MS.gene032302 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53316.t1 | MTR_2g090295 | 95.322 | 171 | 8 | 0 | 15 | 185 | 1 | 171 | 9.78e-124 | 349 |
MS.gene53316.t1 | MTR_8g465910 | 53.933 | 178 | 66 | 6 | 15 | 184 | 1 | 170 | 4.01e-57 | 180 |
MS.gene53316.t1 | MTR_2g090330 | 64.545 | 110 | 29 | 2 | 51 | 160 | 30 | 129 | 2.62e-44 | 145 |
MS.gene53316.t1 | MTR_2g090330 | 64.545 | 110 | 29 | 2 | 51 | 160 | 27 | 126 | 2.85e-44 | 144 |
MS.gene53316.t1 | MTR_2g090325 | 62.097 | 124 | 32 | 4 | 43 | 164 | 7 | 117 | 3.28e-42 | 140 |
MS.gene53316.t1 | MTR_2g013550 | 58.889 | 90 | 37 | 0 | 51 | 140 | 24 | 113 | 9.57e-35 | 122 |
MS.gene53316.t1 | MTR_4g088870 | 49.153 | 118 | 48 | 6 | 32 | 140 | 6 | 120 | 1.21e-28 | 105 |
MS.gene53316.t1 | MTR_1g021895 | 52.128 | 94 | 33 | 3 | 51 | 142 | 27 | 110 | 3.12e-27 | 103 |
MS.gene53316.t1 | MTR_4g088875 | 46.721 | 122 | 56 | 3 | 52 | 169 | 29 | 145 | 1.86e-26 | 101 |
MS.gene53316.t1 | MTR_5g019300 | 50.562 | 89 | 36 | 2 | 54 | 142 | 35 | 115 | 3.08e-26 | 100 |
MS.gene53316.t1 | MTR_7g093390 | 41.964 | 112 | 51 | 4 | 29 | 140 | 149 | 246 | 3.55e-24 | 98.6 |
MS.gene53316.t1 | MTR_1g054260 | 37.391 | 115 | 69 | 3 | 54 | 166 | 87 | 200 | 8.18e-23 | 90.9 |
MS.gene53316.t1 | MTR_4g029440 | 37.589 | 141 | 71 | 5 | 11 | 143 | 77 | 208 | 1.51e-22 | 94.0 |
MS.gene53316.t1 | MTR_4g029440 | 37.589 | 141 | 71 | 5 | 11 | 143 | 83 | 214 | 1.54e-22 | 94.0 |
MS.gene53316.t1 | MTR_1g054465 | 40.449 | 89 | 51 | 2 | 54 | 140 | 55 | 143 | 1.63e-21 | 87.4 |
MS.gene53316.t1 | MTR_1g054280 | 35.878 | 131 | 62 | 4 | 25 | 140 | 32 | 155 | 2.12e-21 | 88.6 |
MS.gene53316.t1 | MTR_1g054210 | 46.667 | 75 | 32 | 2 | 50 | 122 | 116 | 184 | 1.62e-19 | 82.8 |
MS.gene53316.t1 | MTR_2g061230 | 34.653 | 101 | 59 | 1 | 43 | 143 | 96 | 189 | 6.10e-17 | 76.3 |
MS.gene53316.t1 | MTR_1g015390 | 42.623 | 61 | 25 | 1 | 56 | 116 | 366 | 416 | 8.93e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53316.t1 | AT4G03510 | 50.476 | 105 | 46 | 2 | 49 | 152 | 41 | 140 | 2.18e-32 | 117 |
MS.gene53316.t1 | AT4G03510 | 50.476 | 105 | 46 | 2 | 49 | 152 | 41 | 140 | 2.18e-32 | 117 |
MS.gene53316.t1 | AT4G03510 | 50.476 | 105 | 46 | 2 | 49 | 152 | 41 | 140 | 2.18e-32 | 117 |
MS.gene53316.t1 | AT4G03510 | 50.476 | 105 | 46 | 2 | 49 | 152 | 41 | 140 | 2.18e-32 | 117 |
MS.gene53316.t1 | AT4G27470 | 50.806 | 124 | 54 | 5 | 54 | 173 | 42 | 162 | 5.69e-32 | 115 |
MS.gene53316.t1 | AT4G28270 | 49.573 | 117 | 41 | 4 | 38 | 145 | 2 | 109 | 8.29e-32 | 114 |
MS.gene53316.t1 | AT1G74990 | 44.545 | 110 | 49 | 3 | 44 | 151 | 7 | 106 | 4.19e-27 | 100 |
MS.gene53316.t1 | AT2G23780 | 54.945 | 91 | 29 | 3 | 54 | 142 | 26 | 106 | 1.56e-26 | 101 |
MS.gene53316.t1 | AT2G23780 | 54.945 | 91 | 29 | 3 | 54 | 142 | 26 | 106 | 1.56e-26 | 101 |
MS.gene53316.t1 | AT2G23780 | 54.945 | 91 | 29 | 3 | 54 | 142 | 26 | 106 | 1.56e-26 | 101 |
MS.gene53316.t1 | AT1G19310 | 46.789 | 109 | 44 | 4 | 38 | 142 | 3 | 101 | 6.13e-26 | 99.8 |
MS.gene53316.t1 | AT3G58030 | 43.137 | 102 | 45 | 3 | 41 | 140 | 122 | 212 | 1.03e-22 | 94.4 |
MS.gene53316.t1 | AT3G58030 | 43.137 | 102 | 45 | 3 | 41 | 140 | 122 | 212 | 1.03e-22 | 94.4 |
MS.gene53316.t1 | AT3G58030 | 43.137 | 102 | 45 | 3 | 41 | 140 | 122 | 212 | 1.03e-22 | 94.4 |
MS.gene53316.t1 | AT3G58030 | 43.137 | 102 | 45 | 3 | 41 | 140 | 122 | 212 | 1.03e-22 | 94.4 |
MS.gene53316.t1 | AT2G42030 | 43.519 | 108 | 45 | 4 | 50 | 152 | 133 | 229 | 8.75e-21 | 89.0 |
MS.gene53316.t1 | AT2G44410 | 36.364 | 110 | 61 | 2 | 33 | 140 | 100 | 202 | 3.11e-18 | 81.6 |
MS.gene53316.t1 | AT2G26350 | 37.895 | 95 | 43 | 3 | 22 | 116 | 299 | 377 | 8.49e-11 | 60.5 |
Find 50 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCTTCCATGGAATCAATT+TGG | 0.249281 | 2.1:-10777076 | None:intergenic |
AAAGGCAATGATCACCAATT+AGG | 0.249482 | 2.1:+10777374 | MS.gene53316:CDS |
GTTGAGAATGATTCGGATAA+TGG | 0.278191 | 2.1:-10777502 | None:intergenic |
CTTTGGAAGGCGGCGTAGTT+TGG | 0.290827 | 2.1:-10777355 | None:intergenic |
CTTACAATTTGTTCCTTGTT+TGG | 0.292248 | 2.1:-10777008 | None:intergenic |
GCAAGTGGTGAAGCAATTTC+TGG | 0.315559 | 2.1:+10777125 | MS.gene53316:CDS |
GAGATTTCTGATTTGCATAC+TGG | 0.331060 | 2.1:-10777299 | None:intergenic |
TTGAGAATGATTCGGATAAT+GGG | 0.356464 | 2.1:-10777501 | None:intergenic |
CTAGACCGCTTGGTCCTTCA+TGG | 0.359817 | 2.1:+10777411 | MS.gene53316:CDS |
AAGGCAATGATCACCAATTA+GGG | 0.391729 | 2.1:+10777375 | MS.gene53316:CDS |
GTGGTATGACACTCCCTAAT+TGG | 0.404265 | 2.1:-10777388 | None:intergenic |
ATGTTTCACAACATAATTCT+CGG | 0.420768 | 2.1:+10777468 | MS.gene53316:CDS |
CATGAAGGACCAAGCGGTCT+AGG | 0.421483 | 2.1:-10777410 | None:intergenic |
TTTGCAGCGTCAAGTGATCT+TGG | 0.423758 | 2.1:-10777446 | None:intergenic |
ATTAAGCCATTTGTAAATGC+AGG | 0.444845 | 2.1:-10777231 | None:intergenic |
GATCCAGTGGTCACTCTTTG+TGG | 0.447780 | 2.1:+10777191 | MS.gene53316:CDS |
TAATTGGTGATCATTGCCTT+TGG | 0.448612 | 2.1:-10777372 | None:intergenic |
GCTGGCCCTGCATTTACAAA+TGG | 0.463384 | 2.1:+10777225 | MS.gene53316:CDS |
CTCCTCAAAATACTGATTGA+AGG | 0.463468 | 2.1:-10777045 | None:intergenic |
TATGAACCAAATTGATTCCA+TGG | 0.475517 | 2.1:+10777070 | MS.gene53316:CDS |
TTTGTGGTCATCTCTACTGC+TGG | 0.480977 | 2.1:+10777207 | MS.gene53316:CDS |
CTTTGACTGCAACATATGCT+TGG | 0.503274 | 2.1:+10777157 | MS.gene53316:CDS |
GTTTGGCCGCGGCCGTAGAG+TGG | 0.505416 | 2.1:-10777338 | None:intergenic |
GAAGCAATTTCTGGTTCTAG+TGG | 0.514216 | 2.1:+10777134 | MS.gene53316:CDS |
TGGTGATCATTGCCTTTGGA+AGG | 0.521075 | 2.1:-10777368 | None:intergenic |
TCATCCCTTGTTCCACTCTA+CGG | 0.525770 | 2.1:+10777326 | MS.gene53316:CDS |
AAGGCGGCGTAGTTTGGCCG+CGG | 0.530973 | 2.1:-10777349 | None:intergenic |
CGCGGCCGTAGAGTGGAACA+AGG | 0.543163 | 2.1:-10777331 | None:intergenic |
GTGTATCGTTGAGAATGATT+CGG | 0.543480 | 2.1:-10777509 | None:intergenic |
TCAGATTCAGGTACCAAACA+AGG | 0.552339 | 2.1:+10776995 | None:intergenic |
GTCATACCACCTAGACCGCT+TGG | 0.564556 | 2.1:+10777401 | MS.gene53316:CDS |
AATTGTAAGACAAAAGAGAA+TGG | 0.566830 | 2.1:+10777022 | MS.gene53316:CDS |
CAAACTACGCCGCCTTCCAA+AGG | 0.572732 | 2.1:+10777356 | MS.gene53316:CDS |
GGTAAGTTCGTCATCCATGA+AGG | 0.573904 | 2.1:-10777425 | None:intergenic |
TGATCATTGCCTTTGGAAGG+CGG | 0.577497 | 2.1:-10777365 | None:intergenic |
TGACCACAAAGAGTGACCAC+TGG | 0.593140 | 2.1:-10777194 | None:intergenic |
TTAAGCCATTTGTAAATGCA+GGG | 0.593204 | 2.1:-10777230 | None:intergenic |
GATTTGCATACTGGACATTG+TGG | 0.605821 | 2.1:-10777290 | None:intergenic |
AAATCAAGAGAAGCAGAAGG+AGG | 0.609520 | 2.1:+10777265 | MS.gene53316:CDS |
GAACCACCTGTGTTAAACAT+TGG | 0.613627 | 2.1:-10777536 | None:intergenic |
CGAAAATCAAGAGAAGCAGA+AGG | 0.635468 | 2.1:+10777262 | MS.gene53316:CDS |
TGAGAATGATTCGGATAATG+GGG | 0.646474 | 2.1:-10777500 | None:intergenic |
GAAGGACCAAGCGGTCTAGG+TGG | 0.660331 | 2.1:-10777407 | None:intergenic |
ACTTCGCCAATGTTTAACAC+AGG | 0.666429 | 2.1:+10777530 | MS.gene53316:CDS |
GGAGTGTGTGCAAGATCCAG+TGG | 0.671005 | 2.1:+10777178 | MS.gene53316:CDS |
CTTGTTCCACTCTACGGCCG+CGG | 0.675004 | 2.1:+10777332 | MS.gene53316:CDS |
TATTTGTTAGGGTTCAACTG+TGG | 0.698742 | 2.1:+10778240 | MS.gene53316:intron |
GTCATCCATGAAGGACCAAG+CGG | 0.707584 | 2.1:-10777416 | None:intergenic |
GAAGTGTGGAAATGTGCAAG+TGG | 0.714630 | 2.1:+10777110 | MS.gene53316:CDS |
GCGGCCGTAGAGTGGAACAA+GGG | 0.719279 | 2.1:-10777330 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTCTATTGAATTATTTGTT+AGG | + | chr2.1:10778228-10778247 | MS.gene53316:intron | 15.0% |
!!! | TTCTATTGAATTATTTGTTA+GGG | + | chr2.1:10778229-10778248 | MS.gene53316:intron | 15.0% |
! | AACTGTATTATATTTCCAGA+AGG | + | chr2.1:10778004-10778023 | MS.gene53316:intron | 25.0% |
! | AATTGTAAGACAAAAGAGAA+TGG | + | chr2.1:10777022-10777041 | MS.gene53316:CDS | 25.0% |
! | ATGTATATATGTTTGTCACT+TGG | - | chr2.1:10777631-10777650 | None:intergenic | 25.0% |
! | ATGTTTCACAACATAATTCT+CGG | + | chr2.1:10777468-10777487 | MS.gene53316:CDS | 25.0% |
! | CAAATTCATACAATCTTACA+GGG | + | chr2.1:10777654-10777673 | MS.gene53316:intron | 25.0% |
! | CTGTAAGATTGTATGAATTT+GGG | - | chr2.1:10777655-10777674 | None:intergenic | 25.0% |
! | GAATGTATTGCACAAAAATA+TGG | - | chr2.1:10777796-10777815 | None:intergenic | 25.0% |
! | GCAATTGTGTAATTTATGTT+TGG | + | chr2.1:10778057-10778076 | MS.gene53316:intron | 25.0% |
!!! | CATTGCAAAAAAGTACTAAA+TGG | - | chr2.1:10778174-10778193 | None:intergenic | 25.0% |
AAAAATCATCTCAAGAAGTG+TGG | + | chr2.1:10777096-10777115 | MS.gene53316:CDS | 30.0% | |
AAATGAAAGTGAAACGGAAA+TGG | - | chr2.1:10778109-10778128 | None:intergenic | 30.0% | |
AATCCATTGGATACAAGTTA+TGG | + | chr2.1:10777566-10777585 | MS.gene53316:intron | 30.0% | |
ATGATATATGCAAGGATCTT+TGG | + | chr2.1:10777602-10777621 | MS.gene53316:intron | 30.0% | |
ATTAAGCCATTTGTAAATGC+AGG | - | chr2.1:10777234-10777253 | None:intergenic | 30.0% | |
CCAAATTCATACAATCTTAC+AGG | + | chr2.1:10777653-10777672 | MS.gene53316:intron | 30.0% | |
CCTGTAAGATTGTATGAATT+TGG | - | chr2.1:10777656-10777675 | None:intergenic | 30.0% | |
CTCTCGTAGATTATTTGAAA+TGG | + | chr2.1:10777922-10777941 | MS.gene53316:intron | 30.0% | |
TATGGAATAGCATTCAAAAC+AGG | - | chr2.1:10777778-10777797 | None:intergenic | 30.0% | |
TTAAGCCATTTGTAAATGCA+GGG | - | chr2.1:10777233-10777252 | None:intergenic | 30.0% | |
TTTCTTCCATGGAATCAATT+TGG | - | chr2.1:10777079-10777098 | None:intergenic | 30.0% | |
! | AGTTTGCATCTGTTCTATTT+TGG | + | chr2.1:10777956-10777975 | MS.gene53316:intron | 30.0% |
! | ATAACTTGTATCCAATGGAT+TGG | - | chr2.1:10777567-10777586 | None:intergenic | 30.0% |
! | CTTACAATTTGTTCCTTGTT+TGG | - | chr2.1:10777011-10777030 | None:intergenic | 30.0% |
! | TAACTTGTATCCAATGGATT+GGG | - | chr2.1:10777566-10777585 | None:intergenic | 30.0% |
! | TATGAACCAAATTGATTCCA+TGG | + | chr2.1:10777070-10777089 | MS.gene53316:CDS | 30.0% |
! | TTGAGAATGATTCGGATAAT+GGG | - | chr2.1:10777504-10777523 | None:intergenic | 30.0% |
! | TTGAGATGATTTTTCTTCCA+TGG | - | chr2.1:10777090-10777109 | None:intergenic | 30.0% |
!! | TTCAATCAGTATTTTGAGGA+GGG | + | chr2.1:10777047-10777066 | MS.gene53316:CDS | 30.0% |
AAAGGCAATGATCACCAATT+AGG | + | chr2.1:10777374-10777393 | MS.gene53316:CDS | 35.0% | |
AAGGCAATGATCACCAATTA+GGG | + | chr2.1:10777375-10777394 | MS.gene53316:CDS | 35.0% | |
AGTTGAGAGAGAAAGGATTT+GGG | - | chr2.1:10778135-10778154 | None:intergenic | 35.0% | |
ATAATCTTTCGCTTGCATGA+AGG | - | chr2.1:10778083-10778102 | None:intergenic | 35.0% | |
ATACATCTAACGACTAAACC+GGG | - | chr2.1:10777841-10777860 | None:intergenic | 35.0% | |
ATTCCTGTACAGAAAACAAG+CGG | + | chr2.1:10777812-10777831 | MS.gene53316:intron | 35.0% | |
GATACAAGTTATGGTGTCTT+TGG | + | chr2.1:10777575-10777594 | MS.gene53316:intron | 35.0% | |
GATACATCTAACGACTAAAC+CGG | - | chr2.1:10777842-10777861 | None:intergenic | 35.0% | |
GTGTATCGTTGAGAATGATT+CGG | - | chr2.1:10777512-10777531 | None:intergenic | 35.0% | |
TCAAATAATCTACGAGAGAC+AGG | - | chr2.1:10777920-10777939 | None:intergenic | 35.0% | |
TTGGTGAGATGATATATGCA+AGG | + | chr2.1:10777594-10777613 | MS.gene53316:intron | 35.0% | |
! | ACACCATAACTTGTATCCAA+TGG | - | chr2.1:10777572-10777591 | None:intergenic | 35.0% |
! | CTCCTCAAAATACTGATTGA+AGG | - | chr2.1:10777048-10777067 | None:intergenic | 35.0% |
! | CTTCTGCTTCTCTTGATTTT+CGG | - | chr2.1:10777264-10777283 | None:intergenic | 35.0% |
! | GAGATTTCTGATTTGCATAC+TGG | - | chr2.1:10777302-10777321 | None:intergenic | 35.0% |
! | GTTGAGAATGATTCGGATAA+TGG | - | chr2.1:10777505-10777524 | None:intergenic | 35.0% |
! | TAATTGGTGATCATTGCCTT+TGG | - | chr2.1:10777375-10777394 | None:intergenic | 35.0% |
! | TATTTGTTAGGGTTCAACTG+TGG | + | chr2.1:10778240-10778259 | MS.gene53316:intron | 35.0% |
! | TGAGAATGATTCGGATAATG+GGG | - | chr2.1:10777503-10777522 | None:intergenic | 35.0% |
!! | CTTCAATCAGTATTTTGAGG+AGG | + | chr2.1:10777046-10777065 | MS.gene53316:CDS | 35.0% |
!!! | ACATCTGTTGTTTTTCCTTC+TGG | - | chr2.1:10778022-10778041 | None:intergenic | 35.0% |
AAATCAAGAGAAGCAGAAGG+AGG | + | chr2.1:10777265-10777284 | MS.gene53316:CDS | 40.0% | |
ACTTCGCCAATGTTTAACAC+AGG | + | chr2.1:10777530-10777549 | MS.gene53316:CDS | 40.0% | |
ATCAAATGCCTTCTGATCCT+TGG | - | chr2.1:10777689-10777708 | None:intergenic | 40.0% | |
ATCCTTTCTCTCTCAACTCA+TGG | + | chr2.1:10778137-10778156 | MS.gene53316:intron | 40.0% | |
CGAAAATCAAGAGAAGCAGA+AGG | + | chr2.1:10777262-10777281 | MS.gene53316:CDS | 40.0% | |
CTTTGACTGCAACATATGCT+TGG | + | chr2.1:10777157-10777176 | MS.gene53316:CDS | 40.0% | |
GAACCACCTGTGTTAAACAT+TGG | - | chr2.1:10777539-10777558 | None:intergenic | 40.0% | |
GAGTTGAGAGAGAAAGGATT+TGG | - | chr2.1:10778136-10778155 | None:intergenic | 40.0% | |
GATTTGCATACTGGACATTG+TGG | - | chr2.1:10777293-10777312 | None:intergenic | 40.0% | |
GGGGAGAAATGAAAGTGAAA+CGG | - | chr2.1:10778115-10778134 | None:intergenic | 40.0% | |
GTTGAGAGAGAAAGGATTTG+GGG | - | chr2.1:10778134-10778153 | None:intergenic | 40.0% | |
TATCAGAGAAGCTGCACATT+TGG | + | chr2.1:10777867-10777886 | MS.gene53316:intron | 40.0% | |
TCAGTAATCCAAGGATCAGA+AGG | + | chr2.1:10777678-10777697 | MS.gene53316:intron | 40.0% | |
TCCTTTCTCTCTCAACTCAT+GGG | + | chr2.1:10778138-10778157 | MS.gene53316:intron | 40.0% | |
TGAAAGTGAAACGGAAATGG+AGG | - | chr2.1:10778106-10778125 | None:intergenic | 40.0% | |
TTACAGGGATCAGTAATCCA+AGG | + | chr2.1:10777669-10777688 | MS.gene53316:intron | 40.0% | |
! | GGCCTTCAATCAGTATTTTG+AGG | + | chr2.1:10777043-10777062 | MS.gene53316:CDS | 40.0% |
!! | ATACCGCTTGTTTTCTGTAC+AGG | - | chr2.1:10777818-10777837 | None:intergenic | 40.0% |
!! | GAAGCAATTTCTGGTTCTAG+TGG | + | chr2.1:10777134-10777153 | MS.gene53316:CDS | 40.0% |
ACAAAACTGTGCAGCAAAGG+AGG | - | chr2.1:10777748-10777767 | None:intergenic | 45.0% | |
ACAGAAAACAAGCGGTATCC+CGG | + | chr2.1:10777820-10777839 | MS.gene53316:intron | 45.0% | |
GAAGTGTGGAAATGTGCAAG+TGG | + | chr2.1:10777110-10777129 | MS.gene53316:CDS | 45.0% | |
GACACAAAACTGTGCAGCAA+AGG | - | chr2.1:10777751-10777770 | None:intergenic | 45.0% | |
GCAAGTGGTGAAGCAATTTC+TGG | + | chr2.1:10777125-10777144 | MS.gene53316:CDS | 45.0% | |
GGTAAGTTCGTCATCCATGA+AGG | - | chr2.1:10777428-10777447 | None:intergenic | 45.0% | |
GTGGTATGACACTCCCTAAT+TGG | - | chr2.1:10777391-10777410 | None:intergenic | 45.0% | |
TCATCCCTTGTTCCACTCTA+CGG | + | chr2.1:10777326-10777345 | MS.gene53316:CDS | 45.0% | |
TCGCCAATGTTTAACACAGG+TGG | + | chr2.1:10777533-10777552 | MS.gene53316:intron | 45.0% | |
TGGTGATCATTGCCTTTGGA+AGG | - | chr2.1:10777371-10777390 | None:intergenic | 45.0% | |
TTTGCAGCGTCAAGTGATCT+TGG | - | chr2.1:10777449-10777468 | None:intergenic | 45.0% | |
TTTGTGGTCATCTCTACTGC+TGG | + | chr2.1:10777207-10777226 | MS.gene53316:CDS | 45.0% | |
! | GCTTCTCTTGATTTTCGGCA+TGG | - | chr2.1:10777259-10777278 | None:intergenic | 45.0% |
! | TCCCATGAGTTGAGAGAGAA+AGG | - | chr2.1:10778142-10778161 | None:intergenic | 45.0% |
! | TGATCATTGCCTTTGGAAGG+CGG | - | chr2.1:10777368-10777387 | None:intergenic | 45.0% |
!! | TGCACATTTGGTGCTGAGAT+AGG | + | chr2.1:10777879-10777898 | MS.gene53316:intron | 45.0% |
!! | TTGGTGCTGAGATAGGTTGT+TGG | + | chr2.1:10777886-10777905 | MS.gene53316:intron | 45.0% |
ATGCGAGCTGATAAGTCGCT+CGG | + | chr2.1:10777707-10777726 | MS.gene53316:intron | 50.0% | |
GATCCAGTGGTCACTCTTTG+TGG | + | chr2.1:10777191-10777210 | MS.gene53316:CDS | 50.0% | |
GCTGGCCCTGCATTTACAAA+TGG | + | chr2.1:10777225-10777244 | MS.gene53316:CDS | 50.0% | |
GTCATCCATGAAGGACCAAG+CGG | - | chr2.1:10777419-10777438 | None:intergenic | 50.0% | |
TGACCACAAAGAGTGACCAC+TGG | - | chr2.1:10777197-10777216 | None:intergenic | 50.0% | |
TGGTTCACTGCCCAATCCAT+TGG | + | chr2.1:10777553-10777572 | MS.gene53316:intron | 50.0% | |
CAAACTACGCCGCCTTCCAA+AGG | + | chr2.1:10777356-10777375 | MS.gene53316:CDS | 55.0% | |
CATGAAGGACCAAGCGGTCT+AGG | - | chr2.1:10777413-10777432 | None:intergenic | 55.0% | |
CTAGACCGCTTGGTCCTTCA+TGG | + | chr2.1:10777411-10777430 | MS.gene53316:CDS | 55.0% | |
GGAGTGTGTGCAAGATCCAG+TGG | + | chr2.1:10777178-10777197 | MS.gene53316:CDS | 55.0% | |
GTCATACCACCTAGACCGCT+TGG | + | chr2.1:10777401-10777420 | MS.gene53316:CDS | 55.0% | |
! | CTTTGGAAGGCGGCGTAGTT+TGG | - | chr2.1:10777358-10777377 | None:intergenic | 55.0% |
CTTGTTCCACTCTACGGCCG+CGG | + | chr2.1:10777332-10777351 | MS.gene53316:CDS | 60.0% | |
GAAGGACCAAGCGGTCTAGG+TGG | - | chr2.1:10777410-10777429 | None:intergenic | 60.0% | |
GCGGCCGTAGAGTGGAACAA+GGG | - | chr2.1:10777333-10777352 | None:intergenic | 60.0% | |
AAGGCGGCGTAGTTTGGCCG+CGG | - | chr2.1:10777352-10777371 | None:intergenic | 65.0% | |
CGCGGCCGTAGAGTGGAACA+AGG | - | chr2.1:10777334-10777353 | None:intergenic | 65.0% | |
GTTTGGCCGCGGCCGTAGAG+TGG | - | chr2.1:10777341-10777360 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 10776999 | 10778266 | 10776999 | ID=MS.gene53316 |
chr2.1 | mRNA | 10776999 | 10778266 | 10776999 | ID=MS.gene53316.t1;Parent=MS.gene53316 |
chr2.1 | exon | 10776999 | 10777551 | 10776999 | ID=MS.gene53316.t1.exon1;Parent=MS.gene53316.t1 |
chr2.1 | CDS | 10776999 | 10777551 | 10776999 | ID=cds.MS.gene53316.t1;Parent=MS.gene53316.t1 |
chr2.1 | exon | 10778250 | 10778266 | 10778250 | ID=MS.gene53316.t1.exon2;Parent=MS.gene53316.t1 |
chr2.1 | CDS | 10778250 | 10778266 | 10778250 | ID=cds.MS.gene53316.t1;Parent=MS.gene53316.t1 |
Gene Sequence |
Protein sequence |