AlfalfaGEDB | MS.gene53419

M. sativa cultivar XinJiangDaYe / MS.gene53419

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0016787 GO:0016825 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53419.t1	XP_013459516.1	93.6	408	26	0	1	408	1	408	1.10E-232	815.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53419.t1	Q9C7Z9	46.1	419	212	6	4	408	5	423	2.3e-104	380.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53419.t1	A0A072UV98	93.6	408	26	0	1	408	1	408	8.2e-233	815.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051588	MS.gene53419	0.813354	2.67E-51	-1.69E-46
MS.gene052982	MS.gene53419	0.807859	4.12E-50	-1.69E-46
MS.gene054920	MS.gene53419	0.802726	4.89E-49	-1.69E-46
MS.gene055892	MS.gene53419	0.814701	1.35E-51	-1.69E-46
MS.gene055893	MS.gene53419	0.821715	3.48E-53	-1.69E-46
MS.gene057330	MS.gene53419	0.805629	1.22E-49	-1.69E-46
MS.gene058700	MS.gene53419	0.806612	7.56E-50	-1.69E-46
MS.gene059540	MS.gene53419	-0.8167	4.83E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 82 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGATGAAAATGTGCGCA+AGG	0.564951	3.2:-32569989	MS.gene53419:CDS
AACATATGTGTCCAACCATA+TGG	0.429002	3.2:+32571517	None:intergenic
AACATCCAAGCTCTCATTTA+TGG	0.152486	3.2:-32569751	MS.gene53419:CDS
AAGCTTAAATTGAATCCATA+TGG	0.406503	3.2:-32571532	MS.gene53419:CDS
AAGTAAAATTGGATCAATAA+AGG	0.309391	3.2:+32572709	None:intergenic
AATGGATTTGAGCTAAACTT+TGG	0.381264	3.2:+32571276	None:intergenic
AATTCTTGATCATCTTGAAC+AGG	0.398440	3.2:+32570147	None:intergenic
AATTTAAATAGGGAACTAAG+GGG	0.694403	3.2:-32569858	MS.gene53419:intron
ACAATGGATGACGATTACAG+TGG	0.739292	3.2:-32571565	MS.gene53419:CDS
ACATCCAAGCTCTCATTTAT+GGG	0.397259	3.2:-32569750	MS.gene53419:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGGACTACTTATTACC+TGG	+	chr3.2:32571580-32571599	None:intergenic	30.0%
AAAACAATGGAGAGAGAAAA+AGG	-	chr3.2:32570164-32570183	MS.gene53419:CDS	30.0%
AATTCTTGATCATCTTGAAC+AGG	+	chr3.2:32573760-32573779	None:intergenic	30.0%
ATATTCTACTTTCAATGCAG+TGG	-	chr3.2:32572593-32572612	MS.gene53419:intron	30.0%
ATGTACATAGATATACCAGT+TGG	-	chr3.2:32572417-32572436	MS.gene53419:intron	30.0%
ATTTAAATAGGGAACTAAGG+GGG	-	chr3.2:32574047-32574066	MS.gene53419:intron	30.0%
CAATGAAAACACCAATTGTT+AGG	-	chr3.2:32571834-32571853	MS.gene53419:intron	30.0%
CATTTCTCATATGAAAACAC+AGG	-	chr3.2:32570266-32570285	MS.gene53419:intron	30.0%
CCAATTTAAATAGGGAACTA+AGG	-	chr3.2:32574044-32574063	MS.gene53419:intron	30.0%
CCTAACAAGATGTCAAAATA+GGG	-	chr3.2:32571964-32571983	MS.gene53419:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	32569311	32574615	32569311	ID=MS.gene53419
chr3.2	mRNA	32569311	32574615	32569311	ID=MS.gene53419.t1;Parent=MS.gene53419
chr3.2	exon	32574484	32574615	32574484	ID=MS.gene53419.t1.exon1;Parent=MS.gene53419.t1
chr3.2	CDS	32574484	32574615	32574484	ID=cds.MS.gene53419.t1;Parent=MS.gene53419.t1
chr3.2	exon	32572654	32572799	32572654	ID=MS.gene53419.t1.exon2;Parent=MS.gene53419.t1
chr3.2	CDS	32572654	32572799	32572654	ID=cds.MS.gene53419.t1;Parent=MS.gene53419.t1
chr3.2	exon	32571399	32571595	32571399	ID=MS.gene53419.t1.exon3;Parent=MS.gene53419.t1
chr3.2	CDS	32571399	32571595	32571399	ID=cds.MS.gene53419.t1;Parent=MS.gene53419.t1
chr3.2	exon	32571211	32571313	32571211	ID=MS.gene53419.t1.exon4;Parent=MS.gene53419.t1
chr3.2	CDS	32571211	32571313	32571211	ID=cds.MS.gene53419.t1;Parent=MS.gene53419.t1
chr3.2	exon	32570772	32570809	32570772	ID=MS.gene53419.t1.exon5;Parent=MS.gene53419.t1
chr3.2	CDS	32570772	32570809	32570772	ID=cds.MS.gene53419.t1;Parent=MS.gene53419.t1
chr3.2	exon	32570575	32570676	32570575	ID=MS.gene53419.t1.exon6;Parent=MS.gene53419.t1
chr3.2	CDS	32570575	32570676	32570575	ID=cds.MS.gene53419.t1;Parent=MS.gene53419.t1
chr3.2	exon	32570331	32570417	32570331	ID=MS.gene53419.t1.exon7;Parent=MS.gene53419.t1
chr3.2	CDS	32570331	32570417	32570331	ID=cds.MS.gene53419.t1;Parent=MS.gene53419.t1
chr3.2	exon	32570137	32570250	32570137	ID=MS.gene53419.t1.exon8;Parent=MS.gene53419.t1
chr3.2	CDS	32570137	32570250	32570137	ID=cds.MS.gene53419.t1;Parent=MS.gene53419.t1
chr3.2	exon	32569972	32570043	32569972	ID=MS.gene53419.t1.exon9;Parent=MS.gene53419.t1
chr3.2	CDS	32569972	32570043	32569972	ID=cds.MS.gene53419.t1;Parent=MS.gene53419.t1
chr3.2	exon	32569751	32569869	32569751	ID=MS.gene53419.t1.exon10;Parent=MS.gene53419.t1
chr3.2	CDS	32569751	32569869	32569751	ID=cds.MS.gene53419.t1;Parent=MS.gene53419.t1
chr3.2	exon	32569311	32569428	32569311	ID=MS.gene53419.t1.exon11;Parent=MS.gene53419.t1
chr3.2	CDS	32569311	32569428	32569311	ID=cds.MS.gene53419.t1;Parent=MS.gene53419.t1

Gene Sequence

>MS.gene53419

TGTGATGGGTTGGAGATGTAGCTGTATTGTGTTAGGTACTTTAATGCTTCTGCCATTCATGGTTTATTCGGGTTCTATTGTCAAGAAACTTCCTGGTTTTGATGGGGAACTTCCATTCAAGCTTGAAACAGGGTGAGTTTCTTTCTTCTTTAATTGAAATTGAAATTGAAATTATCTTGCATCATTTTTCTCATTGATTGATATAACAATCATATTTTATTATACTCCCTCCGTTCATATATATATAAACATCATTTGTATCTAATAAAAAGGTGTTTAAATATGGGGATGGAGAGAGTATTATATCATGTTCAATCATTGCTGTATTGTTGTGGTGTGGTTAGTTGAAGTGAAAAGAATAAACAAATAAGGATAAGGGTATTTAGGGGAAAGTGAAAAGAAGTGAGCATATCACGTGTGCAGTCTTCGCATATCTGTGAAGAAGGAAAAAGTGGTGGGTCCCACCATAATCCCATCTCTCTTCCTTATTTATTAGCATACCTAACATGAGAAATTATATCCATCTCTCCAACTTCTCCCATATTTCGCTTAAACCAAACATAATGTTAGAGTGCTCGACAAATTTTGAATAAGATTACTTTCGATGGATGAAACCTATTTAAAATAAATTTTTAATAATTGTTAGTAAGATTACTTTCGATGGATGAAACCAATCTTATTGAAGATATATTGTTAATAATTGTTTAGTCACATATACAAAAAATGATATATTGATAGTGTTGAAAAAAATATATTCTACAACACTCAAGATATGAAAAGAGTAATGATATTTTGACATCCATTTGATGACAACTTTGCTGACAACCTTGTTTTTCTCACTTCTTATTGGTCAAAAACAATGGAGAGAGAAAAAGGAAGAGAGAGGATAACAACATCATGTGAGTATGAGAGAGAAAGTTGTCCAAAAGTTGTCAAAAAGTGGTTGTCAAAATATCATTTCTCATATGAAAACACAGGGAGAGAAGCTATATTTCTTATATGTTAAGGTGTGTGTCTTCAATTTTGAATAAATACTGCTATTAATTTTTTGGTTTCATTATAACGATCTCATCATTTAATCGCTTATATATGTACTCATATATATGTTTTGTATAAAATATAATTTATAATAAAATTTTCAAAAAAAAATCTATATTTATATAATAAATTACATTGATCCCACAAGTTATGATTTCTGGATCCGTCCTTGATGTGAGGGGACGGGAGAGGAGTGAAAAAGAGATGTTTTAGTTAAACATATGTGTGGTTCAAGAAAGAGAAAGGAAGATGAAGAGACTGATTTTAATTAAAAACATGTTTGGTTCTCAAGAGAGGGGAGGAATTTAAAAATTAATTTACATTGTTGTCCTTAAAATTTAAGTAAGAATGATAATTTTAAGTTTTAACATAAAATTAAAGATAGTTTTGCCAATGTAATAATGATATTAATCATCTTCTATCTCTCTAAAAAACTCTAATTTGGGGGAAGCAATAAACGAGTGGTTTTGCTCCCATTTTTTTTAAAAAAAAAATTAAAAATATTCCCTCCTCACTCCTCCAAAATCCTCCGACCAAATGGACATAACAAAGGCATGATTTCTGTATGTACAATATGTGAAATGTTAACAGTGACTGAACTTAGATAAAATTCTTGAAAAATGTTCCACGATTAAGGGAGTAGGGTATCTTTGAAACGTATTACTATATTCTTTTGAGAGAAATTAATTTTAATATATATCATGAAACACAAATTATTAGTGAACTAGAACGAGAAAAGTTTTAACTTATTAGCCAATTATGGCTGTGTATTGTGTAGATACATAGGAGTGGGAGAAGGAGCAAAGGTGCAAATGTTTTACTATTTTGTGGAGTCCCAAAGAAATCCCTTTATTGATCCAATTTTACTTTGGTTCGTTGGAGGTCCAGGATGTTCTGCACTTTCAGCATTCTTTTTCGAAAATGGTAAATCATAAAGTTGTCTTATTGTTCTAGGTTGTGATTAAGAAGGTTTAAATTATCCAAATGTATATTTTTCTCATTCACATGTTCCTTTGATTGGCAAAGAAAACAATGTGAGAGAATTCTTTGAAAAGGACTAAGGAGAGAGACATGTTCCTTTTTATACTATGATAAGTCATTAGGTGATAGAGCCTCATGGCATATGTATCACGTCAAGCACTTTTATCACTCGACGTAGAACTCCTAACATTGCCATGAAGAGCCGTACGACATTCACTTTATTGGCACTCACCCACTATCACTTAATCCAGGTAATAAGTAGTCCTTTTTGTTGTCCAACTCTCAATATTGGCTATGATGATAAGTCATTAGGTGATAGAGCCTCATGGCATGAGTATCACGTCAACCACTTTTATCACTCGATGTAGAACTCCTAACATTGCCATGAAGACGTAGAACTCCTAACATTGCCATGAAGAGCAGTACGACTTTCACTTTATTGGCACTCACCCACTATCACTTAATCCAGGTAATACGTAGTCCTTTCTGTTGTCCAACTACTCTCAATGAAAACACCAATTGTTAGGACTTAATCCCATGAACAGAGCCTAACCCAAAAGACTAGTCCATTAGATGAGAGAGTCTCATGACTTAAGTATCATGTCAAACACTTTTATCTACTCGATATGGGACTCCTAACAAGATGTCAAAATAGGGACTCTCGCATGAGAAATTTACTATACGAAATTCACATATACTCATGTTAGTTGGCTTCATTGAGAATCATCACCATGACTAGAGTTGTTTCCATTTGACATATACCCTTACCTTGACTATAACAATTTTTGTTCAGACTTTACTTATTTTTCCGGCCAGACTCCAAATTACCAGGTCCTTTTTCCTTGGGAACCAAGTCTTAAAAAACTCACTCAACAAGAATTTTGTACCGGTTTAGGTGAAAAATATCAACAGAGTATATAGAAGTATTTCTACCCAAAATTATAAGTGAAGTGTAGAAAATAAACAAACAACATTTAACATGAATTGCAATGTTTATACAGGGCCATTAACAATGGATGACGATTACAGTGGAATCCTTCCAAAGCTTAAATTGAATCCATATGGTTGGACACATATGTTGAATATGATGTACATAGATATACCAGTTGGGACTGGTTTTTCTTACTCAGAAACACAAGAAGGCTACTATAGCAGTGACACACTGTGGGTGGATCATACATATTCTTTTTTACAAAAGGTCAACAATTTTTCTGCTTCTATTGTTTATGATTTATCAATGCAAAGGTATATGTCTGAAGCATAATATTCTACTTTCAATGCAGTGGATTATTGATCATCCAAAGTTTAGCTCAAATCCATTTTACATAGGTGGTGGCTCATATTCAGGATTTACTACCGGTCCTGTTGTTCAAAAAGTATATGAAGGTAAACACTAACTAGGCGAAAATGCAATATCGGTTCTTTTATTTTTACCGAAACAAGATTTTAGAAGTCCTGAAAGTTGTGAAATTGGGAGACTACACTCCTGTATTGACTAGTATATGTTTGCTCTAGTGGTGAGAAAGTAAAAAAACGTGTGTTTGGCCAAACTCTCCAACTGCTAGCTTTTCAAAAACTACGGTAAAAGTGCATAGGGACGTGCTATTAGCCTGCTTGCCGCTAAACCAAACACGCTCTAAAAGTCTAAAATCTTGTTTCAATTAAAATAAGAGCAATAAAAGTTTATTAAACCTACTAATTAAGTTTCCAGTAACAAATGTTAATTTGATGATTTAAATTTGGCATTATTTTTTTTGAATTTTCTTGAATTCTTGCTTGAATTGCAGGATACATAGCAAGACATAAGCCACATATAAACATCAAAGTAAGAAAGAACACAAGTTTATTTTTATATTTTCATTTATTTTGCTAAATATTGTCTAACCTATATATAACTAATTATCTTATTCTTATCGTCAGGGTTATGTGCTTGCAAGCCCTGCTGTTGACCTGTATAAGCATATAAACGTGAAAGTTTTATATGCATACCATATGAATCTTATACCAAAAGAACTCTATGAGGTTACTTTGCCATTATGAATCTTATAATCATTTTCATTCAACAAATCTAAAATTATGACTTTCTGTCTTAATTTGCATCTATCTATGAAGGTGTCATGCTTTCATATTTATGTGTTTATTAACTTTTATGCTAACAAATTCAAATATAATGTTGCAGTCATTGGAGGAAAATTGTAAGGGTGATTATGTAAACATTGATCCAAATAACACAAAGTGTGTCTCAGATTTTGAAGCTTATTCTGAGGTTAGTATGATACTACTTGCATTCATAGTAATGCATTTGGTTTACTCATAGTAATTAAACATGTAAACCTTTTTTTGCAGCTAGTTCGATATATAAACGAACAACAAATTTTAGAACCTCTCTGTATCACAACACCTGCTGTAAACCAGATAATTCGACAACCTGTTCAAGATGATCAAGAATTTTGGTGTAGAGTTAAGAAAATTTCTCTCTCTGTGTGTGTGTTTATGTGTATGTGTGTCTTCCGAATTGTGCTAACTTGATTAAATTTTTTTACCGTCTTTTAGAGTTATTATCATATTCTGGTCGACATATGGGCAAACGATGAAAATGTGCGCAAGGCTCTTCATGTCAGAGAGGTAAATCTGTATGTCGTTTATAATTGAATGATTATTACTTATTGAAATTAATTGAAATTATCATGAAGCTAAGGATTTAATTCAATAATCCAATTTAAATAGGGAACTAAGGGGGAGTTTTTGAGATGCAACAAGACTTTGGCATACACACAAACACTAACCAGTGCTGTAGAATATTATCGCAATCTCACCAACGCCAACATCCAAGCTCTCATTTATGGGTAACTTCAATTTCAGCACACTTTGCCAAGCAAACCTATATATCACTGCTGCTTCAAATTGAAGTCGTGTTTCGTGTTCAACACGTGTTAGTGTTGAACTTGATACCAACACGAAACTAACACCTGTAGAACACGAAACTAACACATGTAGATATATCTTCATTTACTTCTACTTGTTAATGTCAGTGTTATGTCTGATCTATGTGTTTGTGTTGTAACTACATAGACACAAACGCATTTTAATTTGGATAATTTTTTCCTTTTTTCTTTGATAATGTTATTTCTATTATGTCACACTCATTATTTGGGTGATAACTTGCAGTTCTGATCTTGACTTTTCTGTACCACAACTGAGTACACAATCTTGGATCAAGTCATTCAACATGAGCACACATGATAAATGGCGTGCATGGTTTGTTGAAGGTCAAGTAGCCGGGTAA

Protein sequence

>MS.gene53419.t1

CDGLEMULYCVRYFNASAIHGLFGFYCQETSWFUWGTSIQAUNRIHRSGRRSKGANVLLFCGVPKKSLYUSNFTLVRWRSRMFCTFSILFRKWAINNGURLQWNPSKAUIESIWLDTYVEYDVHRYTSWDWFFLLRNTRRLLUQUHTVGGSYIFFFTKVDYUSSKVULKSILHRWWLIFRIYYRSCCSKSIURIHSKTUATYKHQRLCACKPCCUPVUAYKRESFICIPYESYTKRTLUVIGGKLUGULCKHUSKUHKVCLRFUSLFUASSIYKRTTNFRTSLYHNTCCKPDNSTTCSRUSRILVUKLLSYSGRHMGKRUKCAQGSSCQRGNUGGVFEMQQDFGIHTNTNQCCRILSQSHQRQHPSSHLWFUSULFCTTTEYTILDQVIQHEHTUUMACMVCURSSSRV