Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057330.t1 | AFK39854.1 | 100 | 129 | 0 | 0 | 1 | 129 | 1 | 129 | 1.50E-69 | 271.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057330.t1 | P59234 | 75.2 | 129 | 32 | 0 | 1 | 129 | 1 | 129 | 1.7e-53 | 209.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057330.t1 | G7JB73 | 100.0 | 129 | 0 | 0 | 1 | 129 | 24 | 152 | 1.1e-69 | 271.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051860 | MS.gene057330 | 0.809122 | 2.21E-50 | -1.69E-46 |
| MS.gene054173 | MS.gene057330 | 0.802398 | 5.72E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene057330 | 0.825009 | 5.92E-54 | -1.69E-46 |
| MS.gene056191 | MS.gene057330 | 0.819509 | 1.12E-52 | -1.69E-46 |
| MS.gene057330 | MS.gene057749 | 0.816317 | 5.89E-52 | -1.69E-46 |
| MS.gene057330 | MS.gene057823 | 0.809757 | 1.62E-50 | -1.69E-46 |
| MS.gene057330 | MS.gene060403 | 0.82571 | 4.04E-54 | -1.69E-46 |
| MS.gene057330 | MS.gene069859 | 0.803048 | 4.20E-49 | -1.69E-46 |
| MS.gene057330 | MS.gene070164 | 0.805886 | 1.08E-49 | -1.69E-46 |
| MS.gene057330 | MS.gene070279 | 0.800104 | 1.69E-48 | -1.69E-46 |
| MS.gene057330 | MS.gene070748 | 0.805765 | 1.14E-49 | -1.69E-46 |
| MS.gene057330 | MS.gene071062 | 0.804396 | 2.20E-49 | -1.69E-46 |
| MS.gene057330 | MS.gene072415 | 0.839016 | 2.04E-57 | -1.69E-46 |
| MS.gene057330 | MS.gene07862 | 0.837891 | 3.98E-57 | -1.69E-46 |
| MS.gene057330 | MS.gene09574 | 0.826935 | 2.06E-54 | -1.69E-46 |
| MS.gene057330 | MS.gene20275 | 0.815091 | 1.10E-51 | -1.69E-46 |
| MS.gene057330 | MS.gene21037 | 0.812182 | 4.82E-51 | -1.69E-46 |
| MS.gene057330 | MS.gene22764 | 0.807692 | 4.46E-50 | -1.69E-46 |
| MS.gene057330 | MS.gene25859 | 0.807733 | 4.38E-50 | -1.69E-46 |
| MS.gene057330 | MS.gene28311 | 0.802614 | 5.16E-49 | -1.69E-46 |
| MS.gene057330 | MS.gene28441 | 0.830325 | 3.13E-55 | -1.69E-46 |
| MS.gene057330 | MS.gene30306 | 0.815961 | 7.07E-52 | -1.69E-46 |
| MS.gene057330 | MS.gene30834 | 0.808608 | 2.85E-50 | -1.69E-46 |
| MS.gene057330 | MS.gene34384 | 0.800439 | 1.44E-48 | -1.69E-46 |
| MS.gene057330 | MS.gene35265 | 0.810779 | 9.73E-51 | -1.69E-46 |
| MS.gene057330 | MS.gene39277 | 0.805969 | 1.03E-49 | -1.69E-46 |
| MS.gene057330 | MS.gene39912 | 0.828729 | 7.65E-55 | -1.69E-46 |
| MS.gene057330 | MS.gene43589 | 0.813991 | 1.93E-51 | -1.69E-46 |
| MS.gene057330 | MS.gene43917 | 0.809521 | 1.82E-50 | -1.69E-46 |
| MS.gene057330 | MS.gene44640 | 0.81516 | 1.07E-51 | -1.69E-46 |
| MS.gene057330 | MS.gene45108 | 0.805626 | 1.22E-49 | -1.69E-46 |
| MS.gene057330 | MS.gene46956 | 0.829395 | 5.27E-55 | -1.69E-46 |
| MS.gene057330 | MS.gene47396 | 0.824984 | 6.00E-54 | -1.69E-46 |
| MS.gene057330 | MS.gene47869 | 0.83458 | 2.76E-56 | -1.69E-46 |
| MS.gene057330 | MS.gene48509 | 0.816103 | 6.57E-52 | -1.69E-46 |
| MS.gene057330 | MS.gene49350 | 0.829005 | 6.56E-55 | -1.69E-46 |
| MS.gene057330 | MS.gene50196 | 0.808831 | 2.55E-50 | -1.69E-46 |
| MS.gene057330 | MS.gene50575 | 0.810628 | 1.05E-50 | -1.69E-46 |
| MS.gene057330 | MS.gene51067 | 0.810402 | 1.17E-50 | -1.69E-46 |
| MS.gene057330 | MS.gene52399 | 0.809106 | 2.23E-50 | -1.69E-46 |
| MS.gene057330 | MS.gene53332 | 0.816197 | 6.26E-52 | -1.69E-46 |
| MS.gene057330 | MS.gene53419 | 0.805629 | 1.22E-49 | -1.69E-46 |
| MS.gene057330 | MS.gene55340 | 0.801575 | 8.44E-49 | -1.69E-46 |
| MS.gene057330 | MS.gene56043 | 0.812876 | 3.40E-51 | -1.69E-46 |
| MS.gene057330 | MS.gene56808 | 0.805785 | 1.13E-49 | -1.69E-46 |
| MS.gene057330 | MS.gene57001 | 0.827645 | 1.40E-54 | -1.69E-46 |
| MS.gene057330 | MS.gene57565 | 0.80616 | 9.42E-50 | -1.69E-46 |
| MS.gene057330 | MS.gene57566 | 0.802903 | 4.50E-49 | -1.69E-46 |
| MS.gene057330 | MS.gene58252 | 0.810258 | 1.26E-50 | -1.69E-46 |
| MS.gene057330 | MS.gene58817 | 0.817373 | 3.41E-52 | -1.69E-46 |
| MS.gene057330 | MS.gene59443 | 0.809919 | 1.49E-50 | -1.69E-46 |
| MS.gene057330 | MS.gene62822 | 0.803232 | 3.85E-49 | -1.69E-46 |
| MS.gene057330 | MS.gene66847 | 0.807517 | 4.86E-50 | -1.69E-46 |
| MS.gene057330 | MS.gene68037 | 0.804341 | 2.26E-49 | -1.69E-46 |
| MS.gene057330 | MS.gene68168 | 0.811314 | 7.45E-51 | -1.69E-46 |
| MS.gene057330 | MS.gene68315 | 0.805886 | 1.07E-49 | -1.69E-46 |
| MS.gene057330 | MS.gene70267 | 0.810377 | 1.19E-50 | -1.69E-46 |
| MS.gene057330 | MS.gene71664 | 0.825273 | 5.13E-54 | -1.69E-46 |
| MS.gene057330 | MS.gene73745 | 0.83057 | 2.73E-55 | -1.69E-46 |
| MS.gene057330 | MS.gene75201 | -0.800157 | 1.64E-48 | -1.69E-46 |
| MS.gene057330 | MS.gene82533 | 0.805856 | 1.09E-49 | -1.69E-46 |
| MS.gene057330 | MS.gene88945 | 0.808056 | 3.74E-50 | -1.69E-46 |
| MS.gene057330 | MS.gene89017 | 0.821502 | 3.90E-53 | -1.69E-46 |
| MS.gene057330 | MS.gene90483 | 0.807617 | 4.63E-50 | -1.69E-46 |
| MS.gene057330 | MS.gene90950 | 0.814279 | 1.67E-51 | -1.69E-46 |
| MS.gene057330 | MS.gene91483 | 0.803279 | 3.76E-49 | -1.69E-46 |
| MS.gene057330 | MS.gene92549 | 0.80177 | 7.70E-49 | -1.69E-46 |
| MS.gene057330 | MS.gene95062 | 0.815554 | 8.71E-52 | -1.69E-46 |
| MS.gene057330 | MS.gene95993 | 0.826895 | 2.11E-54 | -1.69E-46 |
| MS.gene057330 | MS.gene96864 | 0.819044 | 1.43E-52 | -1.69E-46 |
| MS.gene057330 | MS.gene98214 | 0.807503 | 4.90E-50 | -1.69E-46 |
| MS.gene057330 | MS.gene99375 | 0.809192 | 2.14E-50 | -1.69E-46 |
| MS.gene057330 | MS.gene99622 | 0.807802 | 4.23E-50 | -1.69E-46 |
| MS.gene057330 | MS.gene99854 | 0.811622 | 6.39E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013560 | MS.gene057330 | PPI |
| MS.gene060686 | MS.gene057330 | PPI |
| MS.gene059765 | MS.gene057330 | PPI |
| MS.gene057330 | MS.gene06889 | PPI |
| MS.gene06671 | MS.gene057330 | PPI |
| MS.gene057330 | MS.gene71872 | PPI |
| MS.gene06887 | MS.gene057330 | PPI |
| MS.gene057330 | MS.gene057133 | PPI |
| MS.gene057330 | MS.gene58367 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057330.t1 | MTR_3g070330 | 100.000 | 129 | 0 | 0 | 1 | 129 | 24 | 152 | 6.83e-95 | 270 |
| MS.gene057330.t1 | MTR_3g070330 | 100.000 | 102 | 0 | 0 | 1 | 102 | 24 | 125 | 1.64e-73 | 215 |
| MS.gene057330.t1 | MTR_5g082490 | 76.562 | 128 | 30 | 0 | 1 | 128 | 1 | 128 | 6.84e-72 | 211 |
| MS.gene057330.t1 | MTR_7g068250 | 73.451 | 113 | 30 | 0 | 1 | 113 | 1 | 113 | 9.07e-60 | 180 |
| MS.gene057330.t1 | MTR_2g078670 | 57.031 | 128 | 55 | 0 | 1 | 128 | 1 | 128 | 8.47e-51 | 157 |
| MS.gene057330.t1 | MTR_8g058785 | 52.344 | 128 | 61 | 0 | 1 | 128 | 1 | 128 | 2.77e-45 | 144 |
| MS.gene057330.t1 | MTR_8g061270 | 52.344 | 128 | 61 | 0 | 1 | 128 | 1 | 128 | 2.77e-45 | 144 |
| MS.gene057330.t1 | MTR_4g088505 | 51.562 | 128 | 60 | 1 | 1 | 128 | 1 | 126 | 7.86e-45 | 142 |
| MS.gene057330.t1 | MTR_8g027255 | 52.128 | 94 | 45 | 0 | 12 | 105 | 8 | 101 | 2.13e-33 | 113 |
| MS.gene057330.t1 | MTR_3g091840 | 51.064 | 94 | 46 | 0 | 12 | 105 | 8 | 101 | 2.71e-33 | 112 |
| MS.gene057330.t1 | MTR_4g088505 | 57.831 | 83 | 35 | 0 | 1 | 83 | 1 | 83 | 7.55e-32 | 109 |
| MS.gene057330.t1 | MTR_1g077750 | 46.067 | 89 | 47 | 1 | 8 | 95 | 3 | 91 | 5.60e-28 | 99.4 |
| MS.gene057330.t1 | MTR_1g077760 | 51.852 | 54 | 26 | 0 | 48 | 101 | 1 | 54 | 4.40e-15 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057330.t1 | AT2G40110 | 80.620 | 129 | 24 | 1 | 1 | 128 | 1 | 129 | 3.98e-77 | 224 |
| MS.gene057330.t1 | AT3G11230 | 69.531 | 128 | 39 | 0 | 1 | 128 | 1 | 128 | 2.04e-64 | 192 |
| MS.gene057330.t1 | AT3G11230 | 69.531 | 128 | 39 | 0 | 1 | 128 | 34 | 161 | 4.41e-64 | 192 |
| MS.gene057330.t1 | AT2G40110 | 83.495 | 103 | 17 | 0 | 1 | 103 | 1 | 103 | 3.58e-63 | 188 |
| MS.gene057330.t1 | AT3G08990 | 64.062 | 128 | 46 | 0 | 1 | 128 | 1 | 128 | 4.53e-60 | 181 |
| MS.gene057330.t1 | AT3G08990 | 64.062 | 128 | 46 | 0 | 1 | 128 | 1 | 128 | 4.53e-60 | 181 |
| MS.gene057330.t1 | AT3G08990 | 64.062 | 128 | 46 | 0 | 1 | 128 | 1 | 128 | 4.53e-60 | 181 |
| MS.gene057330.t1 | AT3G55890 | 66.102 | 118 | 40 | 0 | 1 | 118 | 1 | 118 | 1.44e-56 | 172 |
| MS.gene057330.t1 | AT3G55890 | 66.102 | 118 | 40 | 0 | 1 | 118 | 1 | 118 | 1.44e-56 | 172 |
| MS.gene057330.t1 | AT3G11230 | 73.529 | 102 | 27 | 0 | 1 | 102 | 1 | 102 | 5.12e-53 | 162 |
| MS.gene057330.t1 | AT3G11230 | 73.529 | 102 | 27 | 0 | 1 | 102 | 34 | 135 | 9.71e-53 | 163 |
| MS.gene057330.t1 | AT5G53940 | 57.812 | 128 | 54 | 0 | 1 | 128 | 1 | 128 | 1.87e-51 | 159 |
| MS.gene057330.t1 | AT3G55890 | 69.307 | 101 | 31 | 0 | 1 | 101 | 1 | 101 | 3.01e-50 | 155 |
| MS.gene057330.t1 | AT3G55890 | 69.307 | 101 | 31 | 0 | 1 | 101 | 1 | 101 | 3.01e-50 | 155 |
| MS.gene057330.t1 | AT2G40110 | 83.133 | 83 | 14 | 0 | 1 | 83 | 1 | 83 | 7.81e-50 | 154 |
| MS.gene057330.t1 | AT2G40110 | 83.133 | 83 | 14 | 0 | 1 | 83 | 1 | 83 | 7.81e-50 | 154 |
| MS.gene057330.t1 | AT4G27745 | 51.020 | 98 | 48 | 0 | 12 | 109 | 8 | 105 | 5.81e-34 | 114 |
| MS.gene057330.t1 | AT4G27745 | 51.020 | 98 | 48 | 0 | 12 | 109 | 8 | 105 | 5.81e-34 | 114 |
| MS.gene057330.t1 | AT4G27745 | 51.020 | 98 | 48 | 0 | 12 | 109 | 8 | 105 | 5.81e-34 | 114 |
| MS.gene057330.t1 | AT4G27745 | 51.020 | 98 | 48 | 0 | 12 | 109 | 8 | 105 | 5.81e-34 | 114 |
| MS.gene057330.t1 | AT4G27740 | 41.935 | 93 | 54 | 0 | 14 | 106 | 10 | 102 | 3.34e-22 | 84.7 |
Find 29 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTCCTTCCTTGTACTTT+TGG | 0.231498 | 3.1:+57665777 | None:intergenic |
| GAGATAAGCTTTCCCATGTC+TGG | 0.391588 | 3.1:+57666585 | None:intergenic |
| GAAAGCTTATCTCTTCAATA+AGG | 0.396844 | 3.1:-57666575 | MS.gene057330:CDS |
| GAGGAGAGACCGATGATGAC+TGG | 0.424174 | 3.1:-57665965 | MS.gene057330:CDS |
| GTCCTGATGGTAGCAATTAT+CGG | 0.430362 | 3.1:-57665341 | MS.gene057330:CDS |
| GACAGCGTGAATGTTTCTCT+TGG | 0.452417 | 3.1:-57665995 | MS.gene057330:intron |
| TTGTTTGTGATCAATCTAGA+AGG | 0.468502 | 3.1:-57667519 | MS.gene057330:CDS |
| GTGGGTTGTGGATCGATTGT+GGG | 0.474305 | 3.1:-57665914 | MS.gene057330:CDS |
| ATCCGATAATTGCTACCATC+AGG | 0.497420 | 3.1:+57665339 | None:intergenic |
| TTGGGCAGGTACAAGGTATC+AGG | 0.498809 | 3.1:-57665363 | MS.gene057330:intron |
| TGTGGGTTGTGGATCGATTG+TGG | 0.505248 | 3.1:-57665915 | MS.gene057330:CDS |
| TGTGTTATTGGGCAGGTACA+AGG | 0.508400 | 3.1:-57665370 | MS.gene057330:intron |
| TGTCTTCATATAAAGCAAGA+TGG | 0.516171 | 3.1:+57667466 | None:intergenic |
| GTTGTGGATCGATTGTGGGT+TGG | 0.527280 | 3.1:-57665910 | MS.gene057330:CDS |
| TAGACTTTCCACTCCAGACA+TGG | 0.535000 | 3.1:-57666598 | MS.gene057330:CDS |
| ATATGAAGACATCGTTTCCA+AGG | 0.539876 | 3.1:-57667454 | MS.gene057330:intron |
| GTCTTCATATAAAGCAAGAT+GGG | 0.551967 | 3.1:+57667467 | None:intergenic |
| AACAATGGAGCACATGTTGG+CGG | 0.552605 | 3.1:-57665315 | MS.gene057330:CDS |
| AAGGAAAGTCTGTGCTTGAA+AGG | 0.559471 | 3.1:-57665763 | MS.gene057330:intron |
| ATCAACAATGGAGCACATGT+TGG | 0.564033 | 3.1:-57665318 | MS.gene057330:CDS |
| AGCAATTATCGGATCAACAA+TGG | 0.565705 | 3.1:-57665330 | MS.gene057330:CDS |
| AAAGACCAAAAGTACAAGGA+AGG | 0.567472 | 3.1:-57665782 | MS.gene057330:CDS |
| AGGAGAGACCGATGATGACT+GGG | 0.570959 | 3.1:-57665964 | MS.gene057330:CDS |
| ATGGGTGCGACAGTATCTGC+AGG | 0.576144 | 3.1:+57667485 | None:intergenic |
| AGACTTTCCACTCCAGACAT+GGG | 0.598992 | 3.1:-57666597 | MS.gene057330:CDS |
| AAGCTTTCCCATGTCTGGAG+TGG | 0.608663 | 3.1:+57666590 | None:intergenic |
| TACAAGGTATCAGGTCCTGA+TGG | 0.616196 | 3.1:-57665354 | MS.gene057330:CDS |
| GTATGCAACCCAGTCATCAT+CGG | 0.616477 | 3.1:+57665956 | None:intergenic |
| TGTTTCTCTTGGCGAAACAG+AGG | 0.620615 | 3.1:-57665984 | MS.gene057330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTGTAATTATTTTTC+TGG | - | chr3.1:57665422-57665441 | MS.gene057330:intron | 10.0% |
| !! | AAAAACTCAATTAAGAATTA+GGG | + | chr3.1:57666153-57666172 | None:intergenic | 15.0% |
| !!! | AGATTAAAAACTAACATTTT+CGG | + | chr3.1:57666728-57666747 | None:intergenic | 15.0% |
| !!! | ATAAGATGTTTTAATAAACA+TGG | + | chr3.1:57667275-57667294 | None:intergenic | 15.0% |
| !!! | ATGTTTTATTTCAATTTCTT+AGG | + | chr3.1:57666305-57666324 | None:intergenic | 15.0% |
| !!! | ATTTATGGTAATTTTATTGT+TGG | - | chr3.1:57666125-57666144 | MS.gene057330:intron | 15.0% |
| !!! | TAAGATGTTTTAATAAACAT+GGG | + | chr3.1:57667274-57667293 | None:intergenic | 15.0% |
| !!! | TTTATGGTAATTTTATTGTT+GGG | - | chr3.1:57666126-57666145 | MS.gene057330:intron | 15.0% |
| !!! | TTTTAAATTAGAGTTACTTA+TGG | - | chr3.1:57666648-57666667 | MS.gene057330:intron | 15.0% |
| !! | AAAACTCAATTAAGAATTAG+GGG | + | chr3.1:57666152-57666171 | None:intergenic | 20.0% |
| !! | AAATTACCATAAATTTCCAA+AGG | + | chr3.1:57666119-57666138 | None:intergenic | 20.0% |
| !! | AATATGAAATCATATCATTG+CGG | - | chr3.1:57666674-57666693 | MS.gene057330:intron | 20.0% |
| !! | AATCTAAACCATTACATAAT+TGG | + | chr3.1:57667423-57667442 | None:intergenic | 20.0% |
| !! | ACTTATAATATGTGGTAAAA+AGG | + | chr3.1:57665814-57665833 | None:intergenic | 20.0% |
| !! | CAAAAATATATTGTAACAAG+AGG | + | chr3.1:57666755-57666774 | None:intergenic | 20.0% |
| !! | GAAAAACTCAATTAAGAATT+AGG | + | chr3.1:57666154-57666173 | None:intergenic | 20.0% |
| !! | TCAATTATATCCTTAAAAAG+AGG | + | chr3.1:57666784-57666803 | None:intergenic | 20.0% |
| !!! | AAAGTCTAAAATAACAACAT+AGG | + | chr3.1:57666211-57666230 | None:intergenic | 20.0% |
| !!! | AAGTCTAAAATAACAACATA+GGG | + | chr3.1:57666210-57666229 | None:intergenic | 20.0% |
| !!! | ACTTGATAGATAAATTTTAG+CGG | + | chr3.1:57666616-57666635 | None:intergenic | 20.0% |
| !!! | ATTAGATGAATTGTGTTATT+GGG | - | chr3.1:57667440-57667459 | MS.gene057330:intron | 20.0% |
| ! | AAAAAAAAAGAGAGAGAGAA+AGG | + | chr3.1:57665407-57665426 | None:intergenic | 25.0% |
| ! | ACATTGAGTAGTAGTATTAT+AGG | - | chr3.1:57665678-57665697 | MS.gene057330:intron | 25.0% |
| ! | ACTAAAAGCTACATAAAAGA+AGG | + | chr3.1:57666982-57667001 | None:intergenic | 25.0% |
| ! | ACTGTATTTATTATCTTGGT+TGG | - | chr3.1:57665643-57665662 | MS.gene057330:intron | 25.0% |
| ! | AGTAGTATTATAGGCTAAAT+TGG | - | chr3.1:57665687-57665706 | MS.gene057330:intron | 25.0% |
| ! | ATAAAGAAGGACAAATCAAT+TGG | + | chr3.1:57665513-57665532 | None:intergenic | 25.0% |
| ! | CAATGTGAACTTATAATATG+TGG | + | chr3.1:57665822-57665841 | None:intergenic | 25.0% |
| ! | CATTAAGCAATCAATAAAGA+AGG | + | chr3.1:57665526-57665545 | None:intergenic | 25.0% |
| ! | GACATCACTTTGATTATATT+AGG | + | chr3.1:57667111-57667130 | None:intergenic | 25.0% |
| ! | GATTAGATGAATTGTGTTAT+TGG | - | chr3.1:57667439-57667458 | MS.gene057330:intron | 25.0% |
| ! | GTAACTCTAATTTAAAAGCT+TGG | + | chr3.1:57666645-57666664 | None:intergenic | 25.0% |
| ! | TGGAAATATGTAAGATTATG+AGG | - | chr3.1:57666931-57666950 | MS.gene057330:intron | 25.0% |
| ! | TTAGTAACGTTACAATAAGT+TGG | - | chr3.1:57665787-57665806 | MS.gene057330:CDS | 25.0% |
| ! | TTGCACTGTATTTATTATCT+TGG | - | chr3.1:57665639-57665658 | MS.gene057330:intron | 25.0% |
| !!! | ACACTAGCATTATTTTTCTT+TGG | + | chr3.1:57666064-57666083 | None:intergenic | 25.0% |
| !!! | ATTTTAGCGGTTAACTTTTT+AGG | + | chr3.1:57666603-57666622 | None:intergenic | 25.0% |
| !!! | GGTTATTTTAAACTTCAAGT+TGG | - | chr3.1:57665726-57665745 | MS.gene057330:intron | 25.0% |
| !!! | TGTTTTCCTTTGGAAATTTA+TGG | - | chr3.1:57666110-57666129 | MS.gene057330:intron | 25.0% |
| !!! | TTAGTCTTTTTGTTTTCCTT+TGG | - | chr3.1:57666100-57666119 | MS.gene057330:intron | 25.0% |
| AACAGAGTCCAATTATGTAA+TGG | - | chr3.1:57667412-57667431 | MS.gene057330:intron | 30.0% | |
| ACATTAGACATACATCATTG+TGG | + | chr3.1:57665910-57665929 | None:intergenic | 30.0% | |
| AGACTATTTGAGAGAACTTA+TGG | - | chr3.1:57667198-57667217 | MS.gene057330:intron | 30.0% | |
| ATTGGATGTTTGATCTCTTA+CGG | - | chr3.1:57665705-57665724 | MS.gene057330:intron | 30.0% | |
| CATAAAGAGTCTCTTTAGAT+TGG | - | chr3.1:57667139-57667158 | MS.gene057330:intron | 30.0% | |
| GAAAGCTTATCTCTTCAATA+AGG | - | chr3.1:57666246-57666265 | MS.gene057330:intron | 30.0% | |
| GTCTTCATATAAAGCAAGAT+GGG | + | chr3.1:57665357-57665376 | None:intergenic | 30.0% | |
| TACATAATTGGACTCTGTTT+GGG | + | chr3.1:57667411-57667430 | None:intergenic | 30.0% | |
| TGCAAAGACATTACCATTAT+TGG | + | chr3.1:57666352-57666371 | None:intergenic | 30.0% | |
| TGTCTTCATATAAAGCAAGA+TGG | + | chr3.1:57665358-57665377 | None:intergenic | 30.0% | |
| TTACATAATTGGACTCTGTT+TGG | + | chr3.1:57667412-57667431 | None:intergenic | 30.0% | |
| TTGTTTGTGATCAATCTAGA+AGG | - | chr3.1:57665302-57665321 | MS.gene057330:CDS | 30.0% | |
| ! | ATATCATCCACTAGTATTGA+GGG | + | chr3.1:57666026-57666045 | None:intergenic | 30.0% |
| ! | GTTTATTTGAGATTATCCAC+TGG | - | chr3.1:57667161-57667180 | MS.gene057330:intron | 30.0% |
| !! | AATTTGTTGAGAATCTATGC+TGG | + | chr3.1:57666001-57666020 | None:intergenic | 30.0% |
| !! | ACACTAAAGGAGTATTAAGA+AGG | - | chr3.1:57666535-57666554 | MS.gene057330:intron | 30.0% |
| !! | GTAGCTTTTAGTTACAGAAA+TGG | - | chr3.1:57666990-57667009 | MS.gene057330:intron | 30.0% |
| AAATTCTCCCTCAATACTAG+TGG | - | chr3.1:57666016-57666035 | MS.gene057330:intron | 35.0% | |
| AGAGAGAAAGGTGATGAAAA+AGG | + | chr3.1:57665395-57665414 | None:intergenic | 35.0% | |
| AGCAATTATCGGATCAACAA+TGG | - | chr3.1:57667491-57667510 | MS.gene057330:CDS | 35.0% | |
| AGTATTAAGAAGGAGGTTCA+GGG | - | chr3.1:57666545-57666564 | MS.gene057330:intron | 35.0% | |
| ATAATAAGATGATGCACAGG+CGG | + | chr3.1:57666457-57666476 | None:intergenic | 35.0% | |
| ATATGAAGACATCGTTTCCA+AGG | - | chr3.1:57665367-57665386 | MS.gene057330:intron | 35.0% | |
| CATATCATCCACTAGTATTG+AGG | + | chr3.1:57666027-57666046 | None:intergenic | 35.0% | |
| GCAATAATAAGATGATGCAC+AGG | + | chr3.1:57666460-57666479 | None:intergenic | 35.0% | |
| GCTGGTTACAATTTACAACT+TGG | + | chr3.1:57665983-57666002 | None:intergenic | 35.0% | |
| ! | AAAGACCAAAAGTACAAGGA+AGG | - | chr3.1:57667039-57667058 | MS.gene057330:intron | 35.0% |
| ! | AACATTTTCGGTCAACACTT+TGG | + | chr3.1:57666716-57666735 | None:intergenic | 35.0% |
| ! | AATACTAGTGGATGATATGG+AGG | - | chr3.1:57666028-57666047 | MS.gene057330:intron | 35.0% |
| ! | AATGGTAATGTCTTTGCATG+TGG | - | chr3.1:57666354-57666373 | MS.gene057330:intron | 35.0% |
| ! | ACTTTCCTTCCTTGTACTTT+TGG | + | chr3.1:57667047-57667066 | None:intergenic | 35.0% |
| ! | CGAAAAAGACCAAAAGTACA+AGG | - | chr3.1:57667035-57667054 | MS.gene057330:intron | 35.0% |
| ! | CTCAATACTAGTGGATGATA+TGG | - | chr3.1:57666025-57666044 | MS.gene057330:intron | 35.0% |
| ! | TTTGCAGTTGCCTCTTTTTA+AGG | - | chr3.1:57666771-57666790 | MS.gene057330:intron | 35.0% |
| !! | CTAAAGGAGTATTAAGAAGG+AGG | - | chr3.1:57666538-57666557 | MS.gene057330:intron | 35.0% |
| !! | GTACTTTTGGTCTTTTTCGT+GGG | + | chr3.1:57667034-57667053 | None:intergenic | 35.0% |
| !! | GTTAACTTTTTAGGAGGAGA+GGG | + | chr3.1:57666594-57666613 | None:intergenic | 35.0% |
| !! | TGTACTTTTGGTCTTTTTCG+TGG | + | chr3.1:57667035-57667054 | None:intergenic | 35.0% |
| !! | TTAGCGGTTAACTTTTTAGG+AGG | + | chr3.1:57666600-57666619 | None:intergenic | 35.0% |
| AAGGAAAGTCTGTGCTTGAA+AGG | - | chr3.1:57667058-57667077 | MS.gene057330:intron | 40.0% | |
| AGGTGATGAAAAAGGAACCT+TGG | + | chr3.1:57665387-57665406 | None:intergenic | 40.0% | |
| ATCAACAATGGAGCACATGT+TGG | - | chr3.1:57667503-57667522 | MS.gene057330:CDS | 40.0% | |
| ATCCGATAATTGCTACCATC+AGG | + | chr3.1:57667485-57667504 | None:intergenic | 40.0% | |
| GAATCACACAATGTCAGAGT+AGG | + | chr3.1:57666283-57666302 | None:intergenic | 40.0% | |
| GACATTACCATTATTGGCGA+CGG | + | chr3.1:57666346-57666365 | None:intergenic | 40.0% | |
| GAGTATTAAGAAGGAGGTTC+AGG | - | chr3.1:57666544-57666563 | MS.gene057330:intron | 40.0% | |
| GGTATGAGTTTGGACACTAA+AGG | - | chr3.1:57666522-57666541 | MS.gene057330:intron | 40.0% | |
| GTCCTGATGGTAGCAATTAT+CGG | - | chr3.1:57667480-57667499 | MS.gene057330:CDS | 40.0% | |
| TAATAAGATGATGCACAGGC+GGG | + | chr3.1:57666456-57666475 | None:intergenic | 40.0% | |
| ! | GATGAATTGTGTTATTGGGC+AGG | - | chr3.1:57667444-57667463 | MS.gene057330:intron | 40.0% |
| ! | GTAGCTGACATTTTCTGTGT+GGG | - | chr3.1:57666889-57666908 | MS.gene057330:intron | 40.0% |
| ! | GTATCGTACTGGTATGAGTT+TGG | - | chr3.1:57666512-57666531 | MS.gene057330:intron | 40.0% |
| ! | TGTAGCTGACATTTTCTGTG+TGG | - | chr3.1:57666888-57666907 | MS.gene057330:intron | 40.0% |
| !! | GGTTAACTTTTTAGGAGGAG+AGG | + | chr3.1:57666595-57666614 | None:intergenic | 40.0% |
| !! | TACAGAAATGGTGCTGTTTC+AGG | - | chr3.1:57667002-57667021 | MS.gene057330:intron | 40.0% |
| AACAATGGAGCACATGTTGG+CGG | - | chr3.1:57667506-57667525 | MS.gene057330:CDS | 45.0% | |
| ACCAGTACGATACACCTTCA+GGG | + | chr3.1:57666505-57666524 | None:intergenic | 45.0% | |
| AGACTTTCCACTCCAGACAT+GGG | - | chr3.1:57666224-57666243 | MS.gene057330:intron | 45.0% | |
| ATTGAGACCGTCGCCAATAA+TGG | - | chr3.1:57666336-57666355 | MS.gene057330:intron | 45.0% | |
| CTTACAAGTGCTTATGCCAG+TGG | + | chr3.1:57667180-57667199 | None:intergenic | 45.0% | |
| GACAGCGTGAATGTTTCTCT+TGG | - | chr3.1:57666826-57666845 | MS.gene057330:intron | 45.0% | |
| GAGATAAGCTTTCCCATGTC+TGG | + | chr3.1:57666239-57666258 | None:intergenic | 45.0% | |
| GTATGCAACCCAGTCATCAT+CGG | + | chr3.1:57666868-57666887 | None:intergenic | 45.0% | |
| TACCAGTACGATACACCTTC+AGG | + | chr3.1:57666506-57666525 | None:intergenic | 45.0% | |
| TAGACTTTCCACTCCAGACA+TGG | - | chr3.1:57666223-57666242 | MS.gene057330:intron | 45.0% | |
| TATGTCGATCAAGTCCCTGA+AGG | - | chr3.1:57666488-57666507 | MS.gene057330:intron | 45.0% | |
| TGTTTCTCTTGGCGAAACAG+AGG | - | chr3.1:57666837-57666856 | MS.gene057330:intron | 45.0% | |
| ! | TACAAGGTATCAGGTCCTGA+TGG | - | chr3.1:57667467-57667486 | MS.gene057330:CDS | 45.0% |
| ! | TGTGTTATTGGGCAGGTACA+AGG | - | chr3.1:57667451-57667470 | MS.gene057330:intron | 45.0% |
| !! | GACATTTTCTGTGTGGGTTG+TGG | - | chr3.1:57666895-57666914 | MS.gene057330:intron | 45.0% |
| AAGCTTTCCCATGTCTGGAG+TGG | + | chr3.1:57666234-57666253 | None:intergenic | 50.0% | |
| AGGAGAGACCGATGATGACT+GGG | - | chr3.1:57666857-57666876 | MS.gene057330:intron | 50.0% | |
| GTTGTGGATCGATTGTGGGT+TGG | - | chr3.1:57666911-57666930 | MS.gene057330:intron | 50.0% | |
| ! | GTGGGTTGTGGATCGATTGT+GGG | - | chr3.1:57666907-57666926 | MS.gene057330:intron | 50.0% |
| ! | TCCCTGAAGGTGTATCGTAC+TGG | - | chr3.1:57666501-57666520 | MS.gene057330:intron | 50.0% |
| ! | TGTGGGTTGTGGATCGATTG+TGG | - | chr3.1:57666906-57666925 | MS.gene057330:intron | 50.0% |
| ! | TTGGGCAGGTACAAGGTATC+AGG | - | chr3.1:57667458-57667477 | MS.gene057330:CDS | 50.0% |
| ATGGGTGCGACAGTATCTGC+AGG | + | chr3.1:57665339-57665358 | None:intergenic | 55.0% | |
| GAGGAGAGACCGATGATGAC+TGG | - | chr3.1:57666856-57666875 | MS.gene057330:intron | 55.0% | |
| ATGATGCACAGGCGGGCATG+TGG | + | chr3.1:57666449-57666468 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 57665293 | 57667550 | 57665293 | ID=MS.gene057330 |
| chr3.1 | mRNA | 57665293 | 57667550 | 57665293 | ID=MS.gene057330.t1;Parent=MS.gene057330 |
| chr3.1 | exon | 57667455 | 57667550 | 57667455 | ID=MS.gene057330.t1.exon1;Parent=MS.gene057330.t1 |
| chr3.1 | CDS | 57667455 | 57667550 | 57667455 | ID=cds.MS.gene057330.t1;Parent=MS.gene057330.t1 |
| chr3.1 | exon | 57666574 | 57666617 | 57666574 | ID=MS.gene057330.t1.exon2;Parent=MS.gene057330.t1 |
| chr3.1 | CDS | 57666574 | 57666617 | 57666574 | ID=cds.MS.gene057330.t1;Parent=MS.gene057330.t1 |
| chr3.1 | exon | 57665904 | 57666012 | 57665904 | ID=MS.gene057330.t1.exon3;Parent=MS.gene057330.t1 |
| chr3.1 | CDS | 57665904 | 57666012 | 57665904 | ID=cds.MS.gene057330.t1;Parent=MS.gene057330.t1 |
| chr3.1 | exon | 57665764 | 57665819 | 57665764 | ID=MS.gene057330.t1.exon4;Parent=MS.gene057330.t1 |
| chr3.1 | CDS | 57665764 | 57665819 | 57665764 | ID=cds.MS.gene057330.t1;Parent=MS.gene057330.t1 |
| chr3.1 | exon | 57665293 | 57665377 | 57665293 | ID=MS.gene057330.t1.exon5;Parent=MS.gene057330.t1 |
| chr3.1 | CDS | 57665293 | 57665377 | 57665293 | ID=cds.MS.gene057330.t1;Parent=MS.gene057330.t1 |
| Gene Sequence |
| Protein sequence |
