Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54033.t1 | XP_013465329.1 | 91.4 | 222 | 19 | 0 | 1 | 222 | 1 | 222 | 5.60E-109 | 403.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54033.t1 | P84527 | 63.8 | 224 | 68 | 5 | 1 | 222 | 1 | 213 | 8.6e-74 | 278.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54033.t1 | A0A072VBL0 | 91.4 | 222 | 19 | 0 | 1 | 222 | 1 | 222 | 4.1e-109 | 403.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050585 | MS.gene54033 | 0.817481 | 3.23E-52 | -1.69E-46 |
MS.gene051789 | MS.gene54033 | 0.804734 | 1.87E-49 | -1.69E-46 |
MS.gene052142 | MS.gene54033 | 0.821232 | 4.50E-53 | -1.69E-46 |
MS.gene052187 | MS.gene54033 | 0.817945 | 2.53E-52 | -1.69E-46 |
MS.gene052698 | MS.gene54033 | 0.82847 | 8.83E-55 | -1.69E-46 |
MS.gene053074 | MS.gene54033 | 0.810198 | 1.30E-50 | -1.69E-46 |
MS.gene053383 | MS.gene54033 | 0.805722 | 1.16E-49 | -1.69E-46 |
MS.gene05456 | MS.gene54033 | 0.805802 | 1.12E-49 | -1.69E-46 |
MS.gene055359 | MS.gene54033 | 0.826986 | 2.01E-54 | -1.69E-46 |
MS.gene058168 | MS.gene54033 | 0.819392 | 1.19E-52 | -1.69E-46 |
MS.gene059006 | MS.gene54033 | 0.83416 | 3.52E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54033.t1 | MTR_2g095080 | 91.892 | 222 | 18 | 0 | 1 | 222 | 1 | 222 | 3.39e-135 | 379 |
MS.gene54033.t1 | MTR_2g095130 | 82.883 | 222 | 36 | 2 | 1 | 222 | 1 | 220 | 2.02e-123 | 348 |
MS.gene54033.t1 | MTR_2g095060 | 73.874 | 222 | 55 | 2 | 1 | 222 | 1 | 219 | 1.24e-107 | 308 |
MS.gene54033.t1 | MTR_2g095170 | 76.623 | 154 | 31 | 2 | 1 | 154 | 1 | 149 | 3.36e-80 | 237 |
MS.gene54033.t1 | MTR_7g077110 | 52.121 | 165 | 66 | 5 | 61 | 222 | 34 | 188 | 1.41e-45 | 150 |
MS.gene54033.t1 | MTR_7g077050 | 52.121 | 165 | 66 | 5 | 61 | 222 | 32 | 186 | 1.44e-45 | 150 |
MS.gene54033.t1 | MTR_4g036290 | 55.479 | 146 | 60 | 4 | 80 | 222 | 45 | 188 | 1.89e-45 | 150 |
MS.gene54033.t1 | MTR_7g076960 | 54.422 | 147 | 63 | 4 | 78 | 222 | 41 | 185 | 3.06e-44 | 146 |
MS.gene54033.t1 | MTR_8g031170 | 57.576 | 132 | 53 | 3 | 90 | 220 | 61 | 190 | 3.76e-44 | 146 |
MS.gene54033.t1 | MTR_7g077010 | 54.054 | 148 | 63 | 4 | 78 | 222 | 44 | 189 | 5.61e-44 | 146 |
MS.gene54033.t1 | MTR_7g076990 | 54.054 | 148 | 63 | 4 | 78 | 222 | 43 | 188 | 6.64e-43 | 143 |
MS.gene54033.t1 | MTR_4g036300 | 54.054 | 148 | 63 | 4 | 78 | 222 | 43 | 188 | 6.64e-43 | 143 |
MS.gene54033.t1 | MTR_7g077000 | 56.489 | 131 | 54 | 3 | 93 | 222 | 2 | 130 | 7.04e-43 | 141 |
MS.gene54033.t1 | MTR_7g076770 | 53.378 | 148 | 64 | 4 | 78 | 222 | 44 | 189 | 1.47e-42 | 142 |
MS.gene54033.t1 | MTR_7g012350 | 53.378 | 148 | 64 | 4 | 78 | 222 | 43 | 188 | 1.82e-42 | 142 |
MS.gene54033.t1 | MTR_7g076920 | 53.378 | 148 | 64 | 4 | 78 | 222 | 43 | 188 | 2.36e-42 | 142 |
MS.gene54033.t1 | MTR_7g077090 | 53.378 | 148 | 64 | 4 | 78 | 222 | 44 | 189 | 3.78e-42 | 141 |
MS.gene54033.t1 | MTR_7g012340 | 49.697 | 165 | 70 | 5 | 61 | 222 | 34 | 188 | 5.13e-42 | 141 |
MS.gene54033.t1 | MTR_4g036410 | 52.027 | 148 | 66 | 4 | 78 | 222 | 25 | 170 | 3.85e-41 | 138 |
MS.gene54033.t1 | MTR_7g076970 | 52.027 | 148 | 66 | 4 | 78 | 222 | 44 | 189 | 5.06e-41 | 138 |
MS.gene54033.t1 | MTR_8g031150 | 43.571 | 140 | 64 | 4 | 84 | 222 | 21 | 146 | 5.83e-28 | 103 |
MS.gene54033.t1 | MTR_8g031120 | 48.276 | 116 | 48 | 3 | 108 | 222 | 34 | 138 | 8.02e-27 | 100 |
MS.gene54033.t1 | MTR_8g031160 | 45.968 | 124 | 50 | 3 | 98 | 219 | 12 | 120 | 7.80e-26 | 97.4 |
MS.gene54033.t1 | MTR_7g077040 | 41.985 | 131 | 46 | 4 | 78 | 206 | 22 | 124 | 1.80e-20 | 84.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 70 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTGGAAAATTTATTAGAATT+AGG | 0.191553 | 2.3:-6823933 | MS.gene54033:CDS |
GACTGTTTATGATGTTAAAA+AGG | 0.240792 | 2.3:+6824452 | None:intergenic |
TGGAAAATTTATTAGAATTA+GGG | 0.287537 | 2.3:-6823932 | MS.gene54033:CDS |
GTAGCTGTGTGGAATGCATT+AGG | 0.386867 | 2.3:-6823793 | MS.gene54033:CDS |
GTGGTGGTGAAGGTGATGGT+TGG | 0.387064 | 2.3:+6824302 | None:intergenic |
CAGATGCGGCTCCCAACATT+GGG | 0.392199 | 2.3:+6824328 | None:intergenic |
GAAAATCATACCCTCAATAT+AGG | 0.396741 | 2.3:-6824225 | MS.gene54033:CDS |
TCCGTCGCACTGTAAGTTGC+TGG | 0.406235 | 2.3:+6824246 | None:intergenic |
GGTCAACTCATTTGCATCAA+TGG | 0.423201 | 2.3:-6824367 | MS.gene54033:CDS |
CAAGCCATAGTCCATGTAAC+TGG | 0.428721 | 2.3:+6823745 | None:intergenic |
TGGTGGTGAAGGTGATGGTT+GGG | 0.431597 | 2.3:+6824303 | None:intergenic |
GGTGGTGGTGGTGAAGGTGA+TGG | 0.438170 | 2.3:+6824298 | None:intergenic |
GCAGATGCGGCTCCCAACAT+TGG | 0.452933 | 2.3:+6824327 | None:intergenic |
CCACTCTTTCTGAGTTGCTA+TGG | 0.462618 | 2.3:+6823995 | None:intergenic |
ATTAGAATTAGGGCGTCAAA+TGG | 0.462946 | 2.3:-6823922 | MS.gene54033:CDS |
TAGCTGTGTGGAATGCATTA+GGG | 0.471319 | 2.3:-6823792 | MS.gene54033:CDS |
AGAGTGGTGGCGTTGTCGAC+TGG | 0.476191 | 2.3:-6823979 | MS.gene54033:CDS |
TTGTGTGCCGGAGGATACAT+AGG | 0.484081 | 2.3:+6824192 | None:intergenic |
GTGGAGAACACCTATATTGA+GGG | 0.484892 | 2.3:+6824215 | None:intergenic |
GATGGTACAGCGGAGGTTCA+AGG | 0.490470 | 2.3:-6823957 | MS.gene54033:CDS |
CTTCACCACCACCACCAAGC+GGG | 0.522294 | 2.3:-6824291 | MS.gene54033:CDS |
CCGCTTGGTGGTGGTGGTGA+AGG | 0.523573 | 2.3:+6824292 | None:intergenic |
TGCAATGATGACCCCAATGT+TGG | 0.526465 | 2.3:-6824340 | MS.gene54033:CDS |
AGTACCAGTTACATGGACTA+TGG | 0.528194 | 2.3:-6823749 | MS.gene54033:CDS |
GGTGGAGAACACCTATATTG+AGG | 0.533675 | 2.3:+6824214 | None:intergenic |
AGTGAGTAACGCTTGTGTGC+CGG | 0.546015 | 2.3:+6824180 | None:intergenic |
GCAATGATGACCCCAATGTT+GGG | 0.547076 | 2.3:-6824339 | MS.gene54033:CDS |
GACCAGTGTGATTCAGTGAA+TGG | 0.548137 | 2.3:-6823874 | MS.gene54033:CDS |
ACTGTAAGTTGCTGGTGGAT+CGG | 0.560131 | 2.3:+6824254 | None:intergenic |
TTCACCACCACCACCAAGCG+GGG | 0.560779 | 2.3:-6824290 | MS.gene54033:CDS |
TTAGAATTAGGGCGTCAAAT+GGG | 0.564756 | 2.3:-6823921 | MS.gene54033:CDS |
TGTCGTAACAATATTGTGGA+TGG | 0.577139 | 2.3:-6823820 | MS.gene54033:CDS |
ATGGTGTAGTACCAGTTACA+TGG | 0.578391 | 2.3:-6823756 | MS.gene54033:CDS |
AATGCTATTTCCTCATGCAA+TGG | 0.584516 | 2.3:-6824418 | MS.gene54033:CDS |
GTGATGGTTGGGAGCAGATG+CGG | 0.586266 | 2.3:+6824314 | None:intergenic |
TCTCCACCCTATGTATCCTC+CGG | 0.587429 | 2.3:-6824199 | MS.gene54033:CDS |
AGAACTCTCAACGACTGCGC+TGG | 0.593695 | 2.3:-6824388 | MS.gene54033:CDS |
GTCGCACTGTAAGTTGCTGG+TGG | 0.593908 | 2.3:+6824249 | None:intergenic |
CCATAGCAACTCAGAAAGAG+TGG | 0.600849 | 2.3:-6823995 | MS.gene54033:CDS |
GGATGTGATGCGGAGCATGC+AGG | 0.601600 | 2.3:-6823853 | MS.gene54033:CDS |
TTAGGGTTGAATACAAATGA+TGG | 0.607340 | 2.3:-6823775 | MS.gene54033:CDS |
CTATCTTTAACAGGAGGAGA+CGG | 0.608488 | 2.3:-6824048 | MS.gene54033:intron |
GTCAAATGGGAGGACTGTGA+CGG | 0.609042 | 2.3:-6823908 | MS.gene54033:CDS |
TTAACAGGAGGAGACGGAGG+AGG | 0.612561 | 2.3:-6824042 | MS.gene54033:intron |
GAGGACTGTGACGGCGAAAG+TGG | 0.613441 | 2.3:-6823899 | MS.gene54033:CDS |
ACCAGCAACTTACAGTGCGA+CGG | 0.617204 | 2.3:-6824247 | MS.gene54033:CDS |
GAGTAACGCTTGTGTGCCGG+AGG | 0.623702 | 2.3:+6824183 | None:intergenic |
ACCTTGTCGTAACAATATTG+TGG | 0.624388 | 2.3:-6823824 | MS.gene54033:CDS |
TGGTGGCGTTGTCGACTGGA+TGG | 0.626878 | 2.3:-6823975 | MS.gene54033:CDS |
TACAGCGGAGGTTCAAGGTG+TGG | 0.632283 | 2.3:-6823952 | MS.gene54033:CDS |
GAAATAGCATTTGTGAGGAA+CGG | 0.636932 | 2.3:+6824430 | None:intergenic |
TGTGTGCCGGAGGATACATA+GGG | 0.638124 | 2.3:+6824193 | None:intergenic |
CAGTCGTTGAGAGTTCTACA+AGG | 0.643040 | 2.3:+6824394 | None:intergenic |
ATGAGGAAATAGCATTTGTG+AGG | 0.643440 | 2.3:+6824425 | None:intergenic |
GAATTAGGGCGTCAAATGGG+AGG | 0.651543 | 2.3:-6823918 | MS.gene54033:CDS |
TCACCACCACCACCAAGCGG+GGG | 0.652883 | 2.3:-6824289 | MS.gene54033:CDS |
ATCCATTCACTGAATCACAC+TGG | 0.661311 | 2.3:+6823872 | None:intergenic |
TCGACTGGATGGTACAGCGG+AGG | 0.671589 | 2.3:-6823964 | MS.gene54033:CDS |
TCTACAAGGTCCATTGCATG+AGG | 0.672658 | 2.3:+6824408 | None:intergenic |
CCTTCACCACCACCACCAAG+CGG | 0.675680 | 2.3:-6824292 | MS.gene54033:CDS |
GTGCCGGAGGATACATAGGG+TGG | 0.681653 | 2.3:+6824196 | None:intergenic |
ACAATATTGTTACGACAAGG+TGG | 0.682938 | 2.3:+6823826 | None:intergenic |
AGGTGCTTCTCAGTGCGATG+AGG | 0.686218 | 2.3:-6824022 | MS.gene54033:CDS |
TTGTCGACTGGATGGTACAG+CGG | 0.686803 | 2.3:-6823967 | MS.gene54033:CDS |
TCTTTAACAGGAGGAGACGG+AGG | 0.687923 | 2.3:-6824045 | MS.gene54033:intron |
TTCAGTGAATGGATGTGATG+CGG | 0.689445 | 2.3:-6823863 | MS.gene54033:CDS |
AGATGCGGCTCCCAACATTG+GGG | 0.690440 | 2.3:+6824329 | None:intergenic |
TCCACAATATTGTTACGACA+AGG | 0.694171 | 2.3:+6823823 | None:intergenic |
TAGCAACTCAGAAAGAGTGG+TGG | 0.700359 | 2.3:-6823992 | MS.gene54033:CDS |
TGGATGGATCTGTAGCTGTG+TGG | 0.738134 | 2.3:-6823804 | MS.gene54033:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTAGTTGAATATTATTTA+AGG | + | chr2.3:6824150-6824169 | None:intergenic | 10.0% |
!! | TGGAAAATTTATTAGAATTA+GGG | - | chr2.3:6824305-6824324 | MS.gene54033:CDS | 15.0% |
!! | GTGGAAAATTTATTAGAATT+AGG | - | chr2.3:6824304-6824323 | MS.gene54033:CDS | 20.0% |
!! | TATGATGTTAAAAAGGAAAA+TGG | + | chr2.3:6823781-6823800 | None:intergenic | 20.0% |
! | AATCTCAAACTATCTTTAAC+AGG | - | chr2.3:6824180-6824199 | MS.gene54033:CDS | 25.0% |
! | GACTGTTTATGATGTTAAAA+AGG | + | chr2.3:6823788-6823807 | None:intergenic | 25.0% |
!! | AGTTATGATTACTTGATAGT+TGG | + | chr2.3:6824115-6824134 | None:intergenic | 25.0% |
GAAAATCATACCCTCAATAT+AGG | - | chr2.3:6824012-6824031 | MS.gene54033:CDS | 30.0% | |
TTAGGGTTGAATACAAATGA+TGG | - | chr2.3:6824462-6824481 | MS.gene54033:CDS | 30.0% | |
ACAATATTGTTACGACAAGG+TGG | + | chr2.3:6824414-6824433 | None:intergenic | 35.0% | |
ACCTTGTCGTAACAATATTG+TGG | - | chr2.3:6824413-6824432 | MS.gene54033:CDS | 35.0% | |
ATGAGGAAATAGCATTTGTG+AGG | + | chr2.3:6823815-6823834 | None:intergenic | 35.0% | |
CTCAAACTATCTTTAACAGG+AGG | - | chr2.3:6824183-6824202 | MS.gene54033:CDS | 35.0% | |
GAAATAGCATTTGTGAGGAA+CGG | + | chr2.3:6823810-6823829 | None:intergenic | 35.0% | |
TCCACAATATTGTTACGACA+AGG | + | chr2.3:6824417-6824436 | None:intergenic | 35.0% | |
TGTCGTAACAATATTGTGGA+TGG | - | chr2.3:6824417-6824436 | MS.gene54033:CDS | 35.0% | |
! | ATTAGAATTAGGGCGTCAAA+TGG | - | chr2.3:6824315-6824334 | MS.gene54033:CDS | 35.0% |
! | TTAGAATTAGGGCGTCAAAT+GGG | - | chr2.3:6824316-6824335 | MS.gene54033:CDS | 35.0% |
!! | AATGCTATTTCCTCATGCAA+TGG | - | chr2.3:6823819-6823838 | MS.gene54033:CDS | 35.0% |
!! | ACTTTGAACGATTTTAGCGA+AGG | - | chr2.3:6824077-6824096 | MS.gene54033:intron | 35.0% |
ATCCATTCACTGAATCACAC+TGG | + | chr2.3:6824368-6824387 | None:intergenic | 40.0% | |
ATGGTGTAGTACCAGTTACA+TGG | - | chr2.3:6824481-6824500 | MS.gene54033:CDS | 40.0% | |
CTATCTTTAACAGGAGGAGA+CGG | - | chr2.3:6824189-6824208 | MS.gene54033:CDS | 40.0% | |
GGTCAACTCATTTGCATCAA+TGG | - | chr2.3:6823870-6823889 | MS.gene54033:CDS | 40.0% | |
GTGGAGAACACCTATATTGA+GGG | + | chr2.3:6824025-6824044 | None:intergenic | 40.0% | |
TAGCTGTGTGGAATGCATTA+GGG | - | chr2.3:6824445-6824464 | MS.gene54033:CDS | 40.0% | |
TTCAGTGAATGGATGTGATG+CGG | - | chr2.3:6824374-6824393 | MS.gene54033:CDS | 40.0% | |
! | AGTACCAGTTACATGGACTA+TGG | - | chr2.3:6824488-6824507 | MS.gene54033:CDS | 40.0% |
CAAGCCATAGTCCATGTAAC+TGG | + | chr2.3:6824495-6824514 | None:intergenic | 45.0% | |
CAGTCGTTGAGAGTTCTACA+AGG | + | chr2.3:6823846-6823865 | None:intergenic | 45.0% | |
CCACTCTTTCTGAGTTGCTA+TGG | + | chr2.3:6824245-6824264 | None:intergenic | 45.0% | |
CCATAGCAACTCAGAAAGAG+TGG | - | chr2.3:6824242-6824261 | MS.gene54033:CDS | 45.0% | |
GACCAGTGTGATTCAGTGAA+TGG | - | chr2.3:6824363-6824382 | MS.gene54033:CDS | 45.0% | |
GCAATGATGACCCCAATGTT+GGG | - | chr2.3:6823898-6823917 | MS.gene54033:CDS | 45.0% | |
GGTGGAGAACACCTATATTG+AGG | + | chr2.3:6824026-6824045 | None:intergenic | 45.0% | |
GTAGCTGTGTGGAATGCATT+AGG | - | chr2.3:6824444-6824463 | MS.gene54033:CDS | 45.0% | |
TAGCAACTCAGAAAGAGTGG+TGG | - | chr2.3:6824245-6824264 | MS.gene54033:CDS | 45.0% | |
TCTACAAGGTCCATTGCATG+AGG | + | chr2.3:6823832-6823851 | None:intergenic | 45.0% | |
TGCAATGATGACCCCAATGT+TGG | - | chr2.3:6823897-6823916 | MS.gene54033:CDS | 45.0% | |
! | ACTGTAAGTTGCTGGTGGAT+CGG | + | chr2.3:6823986-6824005 | None:intergenic | 45.0% |
ACCAGCAACTTACAGTGCGA+CGG | - | chr2.3:6823990-6824009 | MS.gene54033:CDS | 50.0% | |
AGTGAGTAACGCTTGTGTGC+CGG | + | chr2.3:6824060-6824079 | None:intergenic | 50.0% | |
GTCAAATGGGAGGACTGTGA+CGG | - | chr2.3:6824329-6824348 | MS.gene54033:CDS | 50.0% | |
TCTCCACCCTATGTATCCTC+CGG | - | chr2.3:6824038-6824057 | MS.gene54033:CDS | 50.0% | |
TCTTTAACAGGAGGAGACGG+AGG | - | chr2.3:6824192-6824211 | MS.gene54033:CDS | 50.0% | |
TGGATGGATCTGTAGCTGTG+TGG | - | chr2.3:6824433-6824452 | MS.gene54033:CDS | 50.0% | |
TGTGTGCCGGAGGATACATA+GGG | + | chr2.3:6824047-6824066 | None:intergenic | 50.0% | |
TTGTGTGCCGGAGGATACAT+AGG | + | chr2.3:6824048-6824067 | None:intergenic | 50.0% | |
! | GAATTAGGGCGTCAAATGGG+AGG | - | chr2.3:6824319-6824338 | MS.gene54033:CDS | 50.0% |
! | TGGTGGTGAAGGTGATGGTT+GGG | + | chr2.3:6823937-6823956 | None:intergenic | 50.0% |
! | TTGTCGACTGGATGGTACAG+CGG | - | chr2.3:6824270-6824289 | MS.gene54033:CDS | 50.0% |
AGAACTCTCAACGACTGCGC+TGG | - | chr2.3:6823849-6823868 | MS.gene54033:CDS | 55.0% | |
AGATGCGGCTCCCAACATTG+GGG | + | chr2.3:6823911-6823930 | None:intergenic | 55.0% | |
AGGTGCTTCTCAGTGCGATG+AGG | - | chr2.3:6824215-6824234 | MS.gene54033:CDS | 55.0% | |
CAGATGCGGCTCCCAACATT+GGG | + | chr2.3:6823912-6823931 | None:intergenic | 55.0% | |
GATGGTACAGCGGAGGTTCA+AGG | - | chr2.3:6824280-6824299 | MS.gene54033:CDS | 55.0% | |
GTCGCACTGTAAGTTGCTGG+TGG | + | chr2.3:6823991-6824010 | None:intergenic | 55.0% | |
GTGATGGTTGGGAGCAGATG+CGG | + | chr2.3:6823926-6823945 | None:intergenic | 55.0% | |
TACAGCGGAGGTTCAAGGTG+TGG | - | chr2.3:6824285-6824304 | MS.gene54033:CDS | 55.0% | |
TCCGTCGCACTGTAAGTTGC+TGG | + | chr2.3:6823994-6824013 | None:intergenic | 55.0% | |
TTAACAGGAGGAGACGGAGG+AGG | - | chr2.3:6824195-6824214 | MS.gene54033:CDS | 55.0% | |
! | GTGGTGGTGAAGGTGATGGT+TGG | + | chr2.3:6823938-6823957 | None:intergenic | 55.0% |
CCTTCACCACCACCACCAAG+CGG | - | chr2.3:6823945-6823964 | MS.gene54033:CDS | 60.0% | |
CTTCACCACCACCACCAAGC+GGG | - | chr2.3:6823946-6823965 | MS.gene54033:CDS | 60.0% | |
GAGGACTGTGACGGCGAAAG+TGG | - | chr2.3:6824338-6824357 | MS.gene54033:CDS | 60.0% | |
GAGTAACGCTTGTGTGCCGG+AGG | + | chr2.3:6824057-6824076 | None:intergenic | 60.0% | |
GCAGATGCGGCTCCCAACAT+TGG | + | chr2.3:6823913-6823932 | None:intergenic | 60.0% | |
GGATGTGATGCGGAGCATGC+AGG | - | chr2.3:6824384-6824403 | MS.gene54033:CDS | 60.0% | |
GTGCCGGAGGATACATAGGG+TGG | + | chr2.3:6824044-6824063 | None:intergenic | 60.0% | |
TCGACTGGATGGTACAGCGG+AGG | - | chr2.3:6824273-6824292 | MS.gene54033:CDS | 60.0% | |
TTCACCACCACCACCAAGCG+GGG | - | chr2.3:6823947-6823966 | MS.gene54033:CDS | 60.0% | |
! | AGAGTGGTGGCGTTGTCGAC+TGG | - | chr2.3:6824258-6824277 | MS.gene54033:CDS | 60.0% |
! | TGGTGGCGTTGTCGACTGGA+TGG | - | chr2.3:6824262-6824281 | MS.gene54033:CDS | 60.0% |
!! | GGTGGTGGTGGTGAAGGTGA+TGG | + | chr2.3:6823942-6823961 | None:intergenic | 60.0% |
TCACCACCACCACCAAGCGG+GGG | - | chr2.3:6823948-6823967 | MS.gene54033:CDS | 65.0% | |
!! | CCGCTTGGTGGTGGTGGTGA+AGG | + | chr2.3:6823948-6823967 | None:intergenic | 65.0% |
CAAGTCCCACCACCCCCGCT+TGG | + | chr2.3:6823963-6823982 | None:intergenic | 70.0% | |
CACCACCAAGCGGGGGTGGT+GGG | - | chr2.3:6823955-6823974 | MS.gene54033:CDS | 70.0% | |
CCACCACCAAGCGGGGGTGG+TGG | - | chr2.3:6823954-6823973 | MS.gene54033:CDS | 75.0% | |
CCACCACCACCAAGCGGGGG+TGG | - | chr2.3:6823951-6823970 | MS.gene54033:CDS | 75.0% | |
GTCCCACCACCCCCGCTTGG+TGG | + | chr2.3:6823960-6823979 | None:intergenic | 75.0% | |
! | CCACCACCCCCGCTTGGTGG+TGG | + | chr2.3:6823957-6823976 | None:intergenic | 75.0% |
!! | CCACCCCCGCTTGGTGGTGG+TGG | + | chr2.3:6823954-6823973 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 6823744 | 6824515 | 6823744 | ID=MS.gene54033 |
chr2.3 | mRNA | 6823744 | 6824515 | 6823744 | ID=MS.gene54033.t1;Parent=MS.gene54033 |
chr2.3 | exon | 6824161 | 6824515 | 6824161 | ID=MS.gene54033.t1.exon1;Parent=MS.gene54033.t1 |
chr2.3 | CDS | 6824161 | 6824515 | 6824161 | ID=cds.MS.gene54033.t1;Parent=MS.gene54033.t1 |
chr2.3 | exon | 6823744 | 6824057 | 6823744 | ID=MS.gene54033.t1.exon2;Parent=MS.gene54033.t1 |
chr2.3 | CDS | 6823744 | 6824057 | 6823744 | ID=cds.MS.gene54033.t1;Parent=MS.gene54033.t1 |
Gene Sequence |
Protein sequence |