Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54435.t1 | KEH21560.1 | 66.2 | 663 | 125 | 8 | 3 | 596 | 1 | 633 | 2.60E-222 | 781.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54435.t1 | O49711 | 27.8 | 698 | 329 | 12 | 93 | 647 | 153 | 818 | 2.2e-65 | 251.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54435.t1 | A0A072U6S7 | 66.2 | 663 | 125 | 8 | 3 | 596 | 1 | 633 | 1.8e-222 | 781.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050442 | MS.gene54435 | 0.805835 | 1.10E-49 | -1.69E-46 |
| MS.gene050750 | MS.gene54435 | 0.803496 | 3.39E-49 | -1.69E-46 |
| MS.gene050953 | MS.gene54435 | 0.806998 | 6.27E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene54435 | 0.809521 | 1.82E-50 | -1.69E-46 |
| MS.gene054236 | MS.gene54435 | 0.808666 | 2.77E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene54435 | 0.818891 | 1.55E-52 | -1.69E-46 |
| MS.gene057026 | MS.gene54435 | 0.804666 | 1.94E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene54435 | 0.800902 | 1.16E-48 | -1.69E-46 |
| MS.gene06052 | MS.gene54435 | 0.808199 | 3.48E-50 | -1.69E-46 |
| MS.gene060572 | MS.gene54435 | 0.809054 | 2.29E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54435.t1 | MTR_7g025580 | 60.298 | 738 | 148 | 17 | 2 | 658 | 1 | 674 | 0.0 | 756 |
| MS.gene54435.t1 | MTR_7g007510 | 68.408 | 402 | 94 | 4 | 230 | 624 | 292 | 667 | 2.98e-167 | 497 |
| MS.gene54435.t1 | MTR_7g025530 | 74.118 | 340 | 64 | 7 | 325 | 654 | 338 | 663 | 5.59e-152 | 459 |
| MS.gene54435.t1 | MTR_7g025530 | 53.150 | 254 | 54 | 6 | 148 | 336 | 1 | 254 | 3.31e-63 | 224 |
| MS.gene54435.t1 | MTR_4g133410 | 44.898 | 441 | 187 | 15 | 246 | 653 | 97 | 514 | 4.18e-91 | 295 |
| MS.gene54435.t1 | MTR_4g133410 | 59.375 | 64 | 19 | 2 | 3 | 59 | 1 | 64 | 5.70e-11 | 66.2 |
| MS.gene54435.t1 | MTR_4g133410 | 44.250 | 400 | 170 | 13 | 286 | 653 | 2 | 380 | 6.60e-80 | 261 |
| MS.gene54435.t1 | MTR_4g081220 | 40.988 | 405 | 174 | 7 | 244 | 644 | 471 | 814 | 2.32e-66 | 236 |
| MS.gene54435.t1 | MTR_4g081220 | 34.530 | 362 | 165 | 8 | 63 | 360 | 125 | 478 | 4.52e-47 | 180 |
| MS.gene54435.t1 | MTR_8g070020 | 43.143 | 350 | 139 | 13 | 246 | 567 | 93 | 410 | 2.24e-59 | 207 |
| MS.gene54435.t1 | MTR_8g070020 | 55.556 | 72 | 23 | 3 | 3 | 65 | 1 | 72 | 5.40e-11 | 65.9 |
| MS.gene54435.t1 | MTR_5g034890 | 41.056 | 341 | 153 | 11 | 340 | 653 | 236 | 555 | 2.46e-56 | 203 |
| MS.gene54435.t1 | MTR_5g034890 | 60.000 | 85 | 26 | 2 | 246 | 325 | 61 | 142 | 2.05e-22 | 102 |
| MS.gene54435.t1 | MTR_4g133410 | 43.377 | 302 | 134 | 10 | 246 | 519 | 97 | 389 | 4.33e-54 | 192 |
| MS.gene54435.t1 | MTR_4g133410 | 59.375 | 64 | 19 | 2 | 3 | 59 | 1 | 64 | 4.91e-11 | 65.9 |
| MS.gene54435.t1 | MTR_4g133410 | 42.146 | 261 | 117 | 8 | 286 | 519 | 2 | 255 | 2.64e-43 | 158 |
| MS.gene54435.t1 | MTR_4g133410 | 47.586 | 145 | 66 | 4 | 246 | 383 | 97 | 238 | 3.64e-30 | 120 |
| MS.gene54435.t1 | MTR_4g133410 | 59.375 | 64 | 19 | 2 | 3 | 59 | 1 | 64 | 1.08e-11 | 66.2 |
| MS.gene54435.t1 | MTR_4g133410 | 47.097 | 155 | 68 | 5 | 246 | 393 | 97 | 244 | 7.15e-30 | 120 |
| MS.gene54435.t1 | MTR_4g133410 | 59.375 | 64 | 19 | 2 | 3 | 59 | 1 | 64 | 1.56e-11 | 66.2 |
| MS.gene54435.t1 | MTR_4g133410 | 47.097 | 155 | 68 | 5 | 246 | 393 | 97 | 244 | 4.03e-29 | 119 |
| MS.gene54435.t1 | MTR_4g133410 | 59.375 | 64 | 19 | 2 | 3 | 59 | 1 | 64 | 1.72e-11 | 66.6 |
| MS.gene54435.t1 | MTR_4g133410 | 47.097 | 155 | 68 | 5 | 246 | 393 | 97 | 244 | 4.82e-29 | 119 |
| MS.gene54435.t1 | MTR_4g133410 | 59.375 | 64 | 19 | 2 | 3 | 59 | 1 | 64 | 1.80e-11 | 66.6 |
| MS.gene54435.t1 | MTR_4g133410 | 47.097 | 155 | 68 | 5 | 246 | 393 | 97 | 244 | 5.70e-29 | 119 |
| MS.gene54435.t1 | MTR_4g133410 | 59.375 | 64 | 19 | 2 | 3 | 59 | 1 | 64 | 1.95e-11 | 66.6 |
| MS.gene54435.t1 | MTR_7g025525 | 59.596 | 99 | 32 | 3 | 569 | 659 | 8 | 106 | 4.85e-27 | 107 |
| MS.gene54435.t1 | MTR_2g082940 | 37.736 | 159 | 89 | 4 | 82 | 232 | 130 | 286 | 3.96e-23 | 102 |
| MS.gene54435.t1 | MTR_4g081210 | 42.647 | 136 | 75 | 2 | 86 | 220 | 108 | 241 | 4.14e-23 | 104 |
| MS.gene54435.t1 | MTR_2g082940 | 37.736 | 159 | 89 | 4 | 82 | 232 | 130 | 286 | 6.54e-23 | 103 |
| MS.gene54435.t1 | MTR_4g133410 | 60.000 | 75 | 29 | 1 | 286 | 360 | 2 | 75 | 1.25e-18 | 85.5 |
| MS.gene54435.t1 | MTR_4g133410 | 60.000 | 75 | 29 | 1 | 286 | 360 | 2 | 75 | 1.45e-18 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54435.t1 | AT4G21880 | 28.429 | 503 | 251 | 10 | 226 | 649 | 348 | 820 | 4.22e-52 | 195 |
| MS.gene54435.t1 | AT4G21880 | 28.429 | 503 | 251 | 10 | 226 | 649 | 304 | 776 | 4.38e-52 | 194 |
| MS.gene54435.t1 | AT4G04790 | 25.263 | 665 | 330 | 16 | 109 | 634 | 12 | 648 | 1.27e-49 | 186 |
| MS.gene54435.t1 | AT4G04790 | 23.709 | 755 | 397 | 18 | 19 | 634 | 71 | 785 | 4.64e-49 | 186 |
| MS.gene54435.t1 | AT4G04790 | 24.000 | 725 | 382 | 17 | 49 | 634 | 87 | 781 | 8.14e-49 | 185 |
Find 134 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTTCGTCACCTCTAAATT+TGG | 0.229990 | 7.3:-91216486 | None:intergenic |
| AGAGAAATGGAAAGATTTAC+TGG | 0.236755 | 7.3:+91218058 | MS.gene54435:CDS |
| GGGTCCACACATTTGCAATT+TGG | 0.242362 | 7.3:+91219617 | MS.gene54435:CDS |
| ATGAGACATAAAACGGCTTT+AGG | 0.245200 | 7.3:-91218560 | None:intergenic |
| TGAACAATGCTAATTTGATT+TGG | 0.267558 | 7.3:+91219738 | MS.gene54435:CDS |
| TGCTATAAAATTTAATTGTT+CGG | 0.276431 | 7.3:-91219423 | None:intergenic |
| AAGCTGCATATGCATGAATA+AGG | 0.283092 | 7.3:-91218280 | None:intergenic |
| GCTATAAAATTTAATTGTTC+GGG | 0.295601 | 7.3:-91219422 | None:intergenic |
| TCGTCCTGAAGCTTCTTAAC+AGG | 0.308665 | 7.3:-91215506 | None:intergenic |
| AGTGGTTGATCAATTCTAAA+TGG | 0.312402 | 7.3:-91222294 | None:intergenic |
| TCAAAATCAATTTCACGATT+AGG | 0.312533 | 7.3:+91215935 | MS.gene54435:CDS |
| ACGGTATGGTGGTTGATTCT+TGG | 0.346780 | 7.3:+91222205 | MS.gene54435:CDS |
| TGAGACATAAAACGGCTTTA+GGG | 0.350177 | 7.3:-91218559 | None:intergenic |
| CAACGTTATATTTCTTCATC+AGG | 0.350542 | 7.3:+91222335 | MS.gene54435:CDS |
| TCCAAGTGCAGCTGATTATC+TGG | 0.352024 | 7.3:+91216422 | MS.gene54435:intron |
| GAAGGACAGCTTCGTCAAAA+TGG | 0.355175 | 7.3:+91219979 | MS.gene54435:CDS |
| CACGTGCATGGTTCATCAAT+AGG | 0.355843 | 7.3:+91215677 | MS.gene54435:CDS |
| TGGAAAGATTTACTGGCTTT+CGG | 0.360154 | 7.3:+91218065 | MS.gene54435:CDS |
| CATCCATCTTTGGTCCATAA+TGG | 0.363658 | 7.3:+91222370 | MS.gene54435:CDS |
| TAGAATGTATCACGCACTTT+TGG | 0.364772 | 7.3:+91219880 | MS.gene54435:intron |
| GATCATAAGGCATCCATCTT+TGG | 0.365075 | 7.3:+91222360 | MS.gene54435:CDS |
| GTTTGCGGGACGAGAGATTA+GGG | 0.366142 | 7.3:-91215469 | None:intergenic |
| TACCTCTTGGTAAAATCCTA+TGG | 0.373018 | 7.3:+91222228 | MS.gene54435:CDS |
| CACACATTTGCAATTTGGAT+TGG | 0.379956 | 7.3:+91219622 | MS.gene54435:CDS |
| TGGAAAGAATATGCACTTCA+TGG | 0.382197 | 7.3:+91219758 | MS.gene54435:CDS |
| AGCCTATTAAGACATTCTAT+TGG | 0.385506 | 7.3:-91219686 | None:intergenic |
| CGGAGTTGAGTGGCGAAGAT+TGG | 0.387939 | 7.3:+91218714 | MS.gene54435:CDS |
| TGATCAACCACTAGCTGCTT+TGG | 0.388116 | 7.3:+91222305 | MS.gene54435:CDS |
| ATTTAGCATTCCAAATTTAG+AGG | 0.389184 | 7.3:+91216476 | MS.gene54435:CDS |
| GGGAGCATCATGGAGTTTGC+GGG | 0.390554 | 7.3:-91215483 | None:intergenic |
| CTCCAATAGAATGTCTTAAT+AGG | 0.391167 | 7.3:+91219684 | MS.gene54435:CDS |
| TCTAGTAGTTCTAGTTGAAC+TGG | 0.394877 | 7.3:-91215815 | None:intergenic |
| AGTGGCGAAGATTGGGTTCA+AGG | 0.406061 | 7.3:+91218722 | MS.gene54435:CDS |
| ACAGCGATGGCGACTTAAGA+TGG | 0.421072 | 7.3:-91218025 | None:intergenic |
| AATTAGCTACCTCGTAAATC+AGG | 0.422014 | 7.3:-91216043 | None:intergenic |
| AGTTTGCGGGACGAGAGATT+AGG | 0.423345 | 7.3:-91215470 | None:intergenic |
| ATTGTTCAGATCTCTTGATA+TGG | 0.424448 | 7.3:-91219723 | None:intergenic |
| CGAAATGGTTCTCCGGTACT+CGG | 0.432055 | 7.3:+91218748 | MS.gene54435:CDS |
| ATGACATGTTGATGTGGATA+AGG | 0.432395 | 7.3:+91215963 | MS.gene54435:CDS |
| TCTTCATCAGGATGATCATA+AGG | 0.435278 | 7.3:+91222347 | MS.gene54435:CDS |
| TGAATTTGAGAAAGCAAAAC+AGG | 0.437605 | 7.3:+91218307 | MS.gene54435:CDS |
| ACGTGCATGGTTCATCAATA+GGG | 0.438307 | 7.3:+91215678 | MS.gene54435:CDS |
| GGGGAGCATCATGGAGTTTG+CGG | 0.441895 | 7.3:-91215484 | None:intergenic |
| TCAATTATATACTTGAGAAC+TGG | 0.442797 | 7.3:-91215851 | None:intergenic |
| GGTTCATCAATAGGGTTGGC+GGG | 0.442955 | 7.3:+91215686 | MS.gene54435:CDS |
| TGTTACGATTTCAAGAGAAA+TGG | 0.449336 | 7.3:+91218045 | MS.gene54435:CDS |
| GTCTCATCTCTTGCATCGCA+CGG | 0.453769 | 7.3:+91218476 | MS.gene54435:CDS |
| GGTTGATTCTTGGTACCTCT+TGG | 0.455500 | 7.3:+91222215 | MS.gene54435:CDS |
| GGAGTTGAGTGGCGAAGATT+GGG | 0.455800 | 7.3:+91218715 | MS.gene54435:CDS |
| ATTTCAATTAACCACTTCAC+TGG | 0.456205 | 7.3:-91218440 | None:intergenic |
| AAAACCGTGGCTTGGTATAG+AGG | 0.456767 | 7.3:+91215574 | MS.gene54435:CDS |
| TACAGATTGCATTTCCTGAC+TGG | 0.461997 | 7.3:-91217149 | None:intergenic |
| ATAATTGACATGGGAGATGT+TGG | 0.464588 | 7.3:+91215866 | MS.gene54435:CDS |
| TGAAGACATGAATGAAAGCT+TGG | 0.466138 | 7.3:+91221759 | MS.gene54435:CDS |
| GAGTTGTTTACACATTTCAA+TGG | 0.467573 | 7.3:-91218870 | None:intergenic |
| TGACATGTTGATGTGGATAA+GGG | 0.469858 | 7.3:+91215964 | MS.gene54435:CDS |
| AGGCTTTATGCCCTCCAGTC+AGG | 0.473117 | 7.3:+91217135 | MS.gene54435:CDS |
| TTGATATGGCACAAACAGAT+AGG | 0.478108 | 7.3:-91219709 | None:intergenic |
| ATTCATGCATATGCAGCTTA+CGG | 0.482741 | 7.3:+91218284 | MS.gene54435:CDS |
| TTCACAAGCATCGCGGATCA+TGG | 0.485679 | 7.3:-91215999 | None:intergenic |
| TTGGAGGAAATCAAGAAAGC+TGG | 0.486524 | 7.3:+91218524 | MS.gene54435:CDS |
| TCATGTTGTTTCCGCTCTGA+AGG | 0.491402 | 7.3:+91219961 | MS.gene54435:CDS |
| TTGTTGTTGTTGCTCATCAA+TGG | 0.495194 | 7.3:-91215600 | None:intergenic |
| TTGGGTTCAAGGTTGCGAAA+TGG | 0.497922 | 7.3:+91218733 | MS.gene54435:CDS |
| CACGAGTAAATTTGAAGCAA+AGG | 0.499951 | 7.3:-91222265 | None:intergenic |
| CTTGTAGTATTATGAAGAGA+TGG | 0.501640 | 7.3:+91218217 | MS.gene54435:intron |
| ATAGAGAAGGCTAGGTCGAC+CGG | 0.503178 | 7.3:+91215734 | MS.gene54435:CDS |
| ACCTCTTGGTAAAATCCTAT+GGG | 0.509959 | 7.3:+91222229 | MS.gene54435:CDS |
| GATCCATTATGGACCAAAGA+TGG | 0.510057 | 7.3:-91222373 | None:intergenic |
| CCTTACCATGAGACATAAAA+CGG | 0.512296 | 7.3:-91218567 | None:intergenic |
| GTTGATAAAATGTGTGAAGC+AGG | 0.513149 | 7.3:+91217115 | MS.gene54435:CDS |
| CTATTAAGACATTCTATTGG+AGG | 0.514053 | 7.3:-91219683 | None:intergenic |
| CTTTGCTTCAAATTTACTCG+TGG | 0.514189 | 7.3:+91222266 | MS.gene54435:CDS |
| AAAAGTTCAACAAAAGCAGC+TGG | 0.517496 | 7.3:-91221790 | None:intergenic |
| GAATATGCACTTCATGGTAT+CGG | 0.519679 | 7.3:+91219764 | MS.gene54435:CDS |
| AGCTGCATATGCATGAATAA+GGG | 0.521597 | 7.3:-91218279 | None:intergenic |
| GTTCGTATGATTCACGTGCA+TGG | 0.522678 | 7.3:+91215665 | MS.gene54435:CDS |
| TGGTTCATCAATAGGGTTGG+CGG | 0.526091 | 7.3:+91215685 | MS.gene54435:CDS |
| TAGCGAAATGCATTTATCTC+CGG | 0.528257 | 7.3:-91215753 | None:intergenic |
| TGCACAACATTCGCAAAACA+TGG | 0.530630 | 7.3:+91215435 | MS.gene54435:CDS |
| ACAACATGAGAGAAATAACT+TGG | 0.534425 | 7.3:-91219947 | None:intergenic |
| CTCCAACAAAACAAGTGCCT+CGG | 0.544653 | 7.3:-91218507 | None:intergenic |
| TGAAATGTGTAAACAACTCA+AGG | 0.548334 | 7.3:+91218874 | MS.gene54435:CDS |
| CTGTGCAGGTCAACACGGTA+TGG | 0.552898 | 7.3:+91222191 | MS.gene54435:intron |
| TCTCATCTCTTGCATCGCAC+GGG | 0.553949 | 7.3:+91218477 | MS.gene54435:CDS |
| AAAGAGATTGAGAATTTGCA+TGG | 0.557143 | 7.3:+91216808 | MS.gene54435:CDS |
| GGTATTTGAAACAAACCCAT+AGG | 0.557232 | 7.3:-91222244 | None:intergenic |
| AAGGTTGCGAAATGGTTCTC+CGG | 0.558669 | 7.3:+91218741 | MS.gene54435:CDS |
| ATATTTCAAAATTAGATCAA+AGG | 0.559314 | 7.3:-91219594 | None:intergenic |
| TTTACACGGCGAGTTGGAGA+GGG | 0.568963 | 7.3:+91218676 | MS.gene54435:CDS |
| GCATGGTTCATCAATAGGGT+TGG | 0.578142 | 7.3:+91215682 | MS.gene54435:CDS |
| GATTGCATTTCCTGACTGGA+GGG | 0.581385 | 7.3:-91217145 | None:intergenic |
| AGTGAAACTGTTGATAGAGA+AGG | 0.583792 | 7.3:+91215721 | MS.gene54435:CDS |
| CGTCCTGAAGCTTCTTAACA+GGG | 0.584685 | 7.3:-91215505 | None:intergenic |
| AGATTGCATTTCCTGACTGG+AGG | 0.584734 | 7.3:-91217146 | None:intergenic |
| ATTTACACGGCGAGTTGGAG+AGG | 0.586525 | 7.3:+91218675 | MS.gene54435:CDS |
| CGCCACTCAACTCCGTGCAT+AGG | 0.587396 | 7.3:-91218706 | None:intergenic |
| TCTTGAAATCGTAACAGCGA+TGG | 0.589302 | 7.3:-91218038 | None:intergenic |
| CAATCCAAATTGCAAATGTG+TGG | 0.592711 | 7.3:-91219621 | None:intergenic |
| AACTGTTGATAGAGAAGGCT+AGG | 0.594724 | 7.3:+91215726 | MS.gene54435:CDS |
| ATGTAATTTACACGGCGAGT+TGG | 0.596302 | 7.3:+91218670 | MS.gene54435:CDS |
| GACATTCTATTGGAGGAACA+AGG | 0.596322 | 7.3:-91219676 | None:intergenic |
| TCTCAAGTATATAATTGACA+TGG | 0.601253 | 7.3:+91215856 | MS.gene54435:CDS |
| GAGGGGTCTTCTCCTATGCA+CGG | 0.607359 | 7.3:+91218694 | MS.gene54435:CDS |
| GCGTACCGACGTTCTTGCCG+AGG | 0.610554 | 7.3:-91221813 | None:intergenic |
| GTTCATCAATAGGGTTGGCG+GGG | 0.611039 | 7.3:+91215687 | MS.gene54435:CDS |
| GTATTGCTGTGGTAAGAACA+AGG | 0.611244 | 7.3:+91216879 | MS.gene54435:CDS |
| TCGTGGATAAAACCGTGGCT+TGG | 0.611372 | 7.3:+91215566 | MS.gene54435:CDS |
| CTCCTATGCACGGAGTTGAG+TGG | 0.612631 | 7.3:+91218704 | MS.gene54435:CDS |
| GAACTACTAGAAGAAACATA+CGG | 0.613565 | 7.3:+91215827 | MS.gene54435:CDS |
| TCCTGAAGCTTCTTAACAGG+GGG | 0.619072 | 7.3:-91215503 | None:intergenic |
| GATATTATGACATGTTGATG+TGG | 0.621071 | 7.3:+91215957 | MS.gene54435:CDS |
| TTGGTCTGTGCAGGTCAACA+CGG | 0.624007 | 7.3:+91222186 | MS.gene54435:intron |
| AAACCGTGGCTTGGTATAGA+GGG | 0.625050 | 7.3:+91215575 | MS.gene54435:CDS |
| CTCAAGTATATAATTGACAT+GGG | 0.627703 | 7.3:+91215857 | MS.gene54435:CDS |
| TACTAACAAGGAAACAATCG+TGG | 0.629927 | 7.3:+91215549 | MS.gene54435:CDS |
| ATCAACGCATACCAGTGAAG+TGG | 0.634142 | 7.3:+91218429 | MS.gene54435:CDS |
| GATGTGTTATGTAATTTACA+CGG | 0.642058 | 7.3:+91218662 | MS.gene54435:CDS |
| AAAACAGCCAAAGCAGCTAG+TGG | 0.645304 | 7.3:-91222312 | None:intergenic |
| GACGAAGCTGTCCTTCAGAG+CGG | 0.656120 | 7.3:-91219972 | None:intergenic |
| GATGCAGGTGAAATTTCGAA+CGG | 0.666081 | 7.3:-91216832 | None:intergenic |
| TGCAGGTCAACACGGTATGG+TGG | 0.667130 | 7.3:+91222194 | MS.gene54435:intron |
| TTACACGGCGAGTTGGAGAG+GGG | 0.672328 | 7.3:+91218677 | MS.gene54435:CDS |
| AACAATCGTGGATAAAACCG+TGG | 0.677928 | 7.3:+91215561 | MS.gene54435:CDS |
| GTACCCTCTATACCAAGCCA+CGG | 0.678898 | 7.3:-91215578 | None:intergenic |
| GTGAATCATACGAACAAGAG+TGG | 0.680474 | 7.3:-91215657 | None:intergenic |
| GCTTGTGAATATATTACTAG+CGG | 0.681296 | 7.3:+91216013 | MS.gene54435:CDS |
| GTGGATAAGGGTTAATGACG+AGG | 0.682278 | 7.3:+91215976 | MS.gene54435:CDS |
| GTCCTGAAGCTTCTTAACAG+GGG | 0.689313 | 7.3:-91215504 | None:intergenic |
| ATCGCACGGGAAATTGTCCG+AGG | 0.710871 | 7.3:+91218490 | MS.gene54435:CDS |
| TGAGACAAGAGTTACTAACA+AGG | 0.717001 | 7.3:+91215537 | MS.gene54435:CDS |
| GTATCGGAGATAGCTATGTG+AGG | 0.726198 | 7.3:+91219780 | MS.gene54435:CDS |
| TAATATATTCACAAGCATCG+CGG | 0.734372 | 7.3:-91216006 | None:intergenic |
| GGAAGCATACCTGATTTACG+AGG | 0.775549 | 7.3:+91216034 | MS.gene54435:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 91215371 | 91222389 | 91215371 | ID=MS.gene54435 |
| chr7.3 | mRNA | 91215371 | 91222389 | 91215371 | ID=MS.gene54435.t1;Parent=MS.gene54435 |
| chr7.3 | exon | 91215371 | 91216055 | 91215371 | ID=MS.gene54435.t1.exon1;Parent=MS.gene54435.t1 |
| chr7.3 | CDS | 91215371 | 91216055 | 91215371 | ID=cds.MS.gene54435.t1;Parent=MS.gene54435.t1 |
| chr7.3 | exon | 91216433 | 91216497 | 91216433 | ID=MS.gene54435.t1.exon2;Parent=MS.gene54435.t1 |
| chr7.3 | CDS | 91216433 | 91216497 | 91216433 | ID=cds.MS.gene54435.t1;Parent=MS.gene54435.t1 |
| chr7.3 | exon | 91216793 | 91216900 | 91216793 | ID=MS.gene54435.t1.exon3;Parent=MS.gene54435.t1 |
| chr7.3 | CDS | 91216793 | 91216900 | 91216793 | ID=cds.MS.gene54435.t1;Parent=MS.gene54435.t1 |
| chr7.3 | exon | 91217094 | 91217207 | 91217094 | ID=MS.gene54435.t1.exon4;Parent=MS.gene54435.t1 |
| chr7.3 | CDS | 91217094 | 91217207 | 91217094 | ID=cds.MS.gene54435.t1;Parent=MS.gene54435.t1 |
| chr7.3 | exon | 91218009 | 91218113 | 91218009 | ID=MS.gene54435.t1.exon5;Parent=MS.gene54435.t1 |
| chr7.3 | CDS | 91218009 | 91218113 | 91218009 | ID=cds.MS.gene54435.t1;Parent=MS.gene54435.t1 |
| chr7.3 | exon | 91218224 | 91218328 | 91218224 | ID=MS.gene54435.t1.exon6;Parent=MS.gene54435.t1 |
| chr7.3 | CDS | 91218224 | 91218328 | 91218224 | ID=cds.MS.gene54435.t1;Parent=MS.gene54435.t1 |
| chr7.3 | exon | 91218419 | 91218583 | 91218419 | ID=MS.gene54435.t1.exon7;Parent=MS.gene54435.t1 |
| chr7.3 | CDS | 91218419 | 91218583 | 91218419 | ID=cds.MS.gene54435.t1;Parent=MS.gene54435.t1 |
| chr7.3 | exon | 91218662 | 91218789 | 91218662 | ID=MS.gene54435.t1.exon8;Parent=MS.gene54435.t1 |
| chr7.3 | CDS | 91218662 | 91218789 | 91218662 | ID=cds.MS.gene54435.t1;Parent=MS.gene54435.t1 |
| chr7.3 | exon | 91218865 | 91218940 | 91218865 | ID=MS.gene54435.t1.exon9;Parent=MS.gene54435.t1 |
| chr7.3 | CDS | 91218865 | 91218940 | 91218865 | ID=cds.MS.gene54435.t1;Parent=MS.gene54435.t1 |
| chr7.3 | exon | 91219401 | 91219475 | 91219401 | ID=MS.gene54435.t1.exon10;Parent=MS.gene54435.t1 |
| chr7.3 | CDS | 91219401 | 91219475 | 91219401 | ID=cds.MS.gene54435.t1;Parent=MS.gene54435.t1 |
| chr7.3 | exon | 91219593 | 91219801 | 91219593 | ID=MS.gene54435.t1.exon11;Parent=MS.gene54435.t1 |
| chr7.3 | CDS | 91219593 | 91219801 | 91219593 | ID=cds.MS.gene54435.t1;Parent=MS.gene54435.t1 |
| chr7.3 | exon | 91219883 | 91220006 | 91219883 | ID=MS.gene54435.t1.exon12;Parent=MS.gene54435.t1 |
| chr7.3 | CDS | 91219883 | 91220006 | 91219883 | ID=cds.MS.gene54435.t1;Parent=MS.gene54435.t1 |
| chr7.3 | exon | 91221733 | 91221829 | 91221733 | ID=MS.gene54435.t1.exon13;Parent=MS.gene54435.t1 |
| chr7.3 | CDS | 91221733 | 91221829 | 91221733 | ID=cds.MS.gene54435.t1;Parent=MS.gene54435.t1 |
| chr7.3 | exon | 91222199 | 91222389 | 91222199 | ID=MS.gene54435.t1.exon14;Parent=MS.gene54435.t1 |
| chr7.3 | CDS | 91222199 | 91222389 | 91222199 | ID=cds.MS.gene54435.t1;Parent=MS.gene54435.t1 |
| Gene Sequence |
| Protein sequence |
