Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54437.t1 | GAU16518.1 | 97 | 466 | 14 | 0 | 1 | 466 | 46 | 511 | 2.60E-258 | 901 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54437.t1 | Q9M888 | 89.2 | 452 | 49 | 0 | 15 | 466 | 60 | 511 | 1.1e-233 | 810.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54437.t1 | A0A072TVM3 | 98.9 | 457 | 5 | 0 | 10 | 466 | 55 | 511 | 1.0e-256 | 895.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050252 | MS.gene54437 | 0.806952 | 6.41E-50 | -1.69E-46 |
MS.gene050791 | MS.gene54437 | 0.81507 | 1.12E-51 | -1.69E-46 |
MS.gene051963 | MS.gene54437 | 0.838364 | 3.01E-57 | -1.69E-46 |
MS.gene057272 | MS.gene54437 | 0.818338 | 2.06E-52 | -1.69E-46 |
MS.gene058827 | MS.gene54437 | 0.812982 | 3.22E-51 | -1.69E-46 |
MS.gene058994 | MS.gene54437 | 0.820847 | 5.52E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
51240 | gene | 1035 | 9752 | 1035 | ID=MS.gene54437 |
51240 | mRNA | 1035 | 9752 | 1035 | ID=MS.gene54437.t1;Parent=MS.gene54437 |
51240 | exon | 9689 | 9752 | 9689 | ID=MS.gene54437.t1.exon1;Parent=MS.gene54437.t1 |
51240 | CDS | 9689 | 9752 | 9689 | ID=cds.MS.gene54437.t1;Parent=MS.gene54437.t1 |
51240 | exon | 7836 | 7971 | 7836 | ID=MS.gene54437.t1.exon2;Parent=MS.gene54437.t1 |
51240 | CDS | 7836 | 7971 | 7836 | ID=cds.MS.gene54437.t1;Parent=MS.gene54437.t1 |
51240 | exon | 7065 | 7216 | 7065 | ID=MS.gene54437.t1.exon3;Parent=MS.gene54437.t1 |
51240 | CDS | 7065 | 7216 | 7065 | ID=cds.MS.gene54437.t1;Parent=MS.gene54437.t1 |
51240 | exon | 6894 | 6941 | 6894 | ID=MS.gene54437.t1.exon4;Parent=MS.gene54437.t1 |
51240 | CDS | 6894 | 6941 | 6894 | ID=cds.MS.gene54437.t1;Parent=MS.gene54437.t1 |
51240 | exon | 6665 | 6757 | 6665 | ID=MS.gene54437.t1.exon5;Parent=MS.gene54437.t1 |
51240 | CDS | 6665 | 6757 | 6665 | ID=cds.MS.gene54437.t1;Parent=MS.gene54437.t1 |
51240 | exon | 6468 | 6574 | 6468 | ID=MS.gene54437.t1.exon6;Parent=MS.gene54437.t1 |
51240 | CDS | 6468 | 6574 | 6468 | ID=cds.MS.gene54437.t1;Parent=MS.gene54437.t1 |
51240 | exon | 5690 | 5804 | 5690 | ID=MS.gene54437.t1.exon7;Parent=MS.gene54437.t1 |
51240 | CDS | 5690 | 5804 | 5690 | ID=cds.MS.gene54437.t1;Parent=MS.gene54437.t1 |
51240 | exon | 5472 | 5558 | 5472 | ID=MS.gene54437.t1.exon8;Parent=MS.gene54437.t1 |
51240 | CDS | 5472 | 5558 | 5472 | ID=cds.MS.gene54437.t1;Parent=MS.gene54437.t1 |
51240 | exon | 5019 | 5223 | 5019 | ID=MS.gene54437.t1.exon9;Parent=MS.gene54437.t1 |
51240 | CDS | 5019 | 5223 | 5019 | ID=cds.MS.gene54437.t1;Parent=MS.gene54437.t1 |
51240 | exon | 4764 | 4858 | 4764 | ID=MS.gene54437.t1.exon10;Parent=MS.gene54437.t1 |
51240 | CDS | 4764 | 4858 | 4764 | ID=cds.MS.gene54437.t1;Parent=MS.gene54437.t1 |
51240 | exon | 3007 | 3075 | 3007 | ID=MS.gene54437.t1.exon11;Parent=MS.gene54437.t1 |
51240 | CDS | 3007 | 3075 | 3007 | ID=cds.MS.gene54437.t1;Parent=MS.gene54437.t1 |
51240 | exon | 2810 | 2917 | 2810 | ID=MS.gene54437.t1.exon12;Parent=MS.gene54437.t1 |
51240 | CDS | 2810 | 2917 | 2810 | ID=cds.MS.gene54437.t1;Parent=MS.gene54437.t1 |
51240 | exon | 2575 | 2693 | 2575 | ID=MS.gene54437.t1.exon13;Parent=MS.gene54437.t1 |
51240 | CDS | 2575 | 2693 | 2575 | ID=cds.MS.gene54437.t1;Parent=MS.gene54437.t1 |
51240 | exon | 1035 | 1179 | 1035 | ID=MS.gene54437.t1.exon14;Parent=MS.gene54437.t1 |
51240 | CDS | 1035 | 1179 | 1035 | ID=cds.MS.gene54437.t1;Parent=MS.gene54437.t1 |
Gene Sequence |
Protein sequence |