AlfalfaGEDB | MS.gene050791

M. sativa cultivar XinJiangDaYe / MS.gene050791

KEGG: K02873
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576
PFAM: PF01294.21

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050791.t1	XP_003626150.1	99	207	2	0	1	207	1	207	3.40E-108	401

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050791.t1	P41127	87.4	206	26	0	2	207	1	206	8.5e-100	364.4

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050791.t1	G7KWF6	99.0	207	2	0	1	207	1	207	2.5e-108	401.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049361	MS.gene050791	0.873876	1.05E-67	-1.69E-46
MS.gene050134	MS.gene050791	0.908561	1.49E-81	-1.69E-46
MS.gene050791	MS.gene050912	0.884873	1.32E-71	-1.69E-46
MS.gene050791	MS.gene051904	0.81677	4.66E-52	-1.69E-46
MS.gene050791	MS.gene051984	0.898071	7.60E-77	-1.69E-46
MS.gene050791	MS.gene052412	0.818751	1.66E-52	-1.69E-46
MS.gene050791	MS.gene052664	0.831015	2.12E-55	-1.69E-46
MS.gene050791	MS.gene053224	0.891314	4.45E-74	-1.69E-46
MS.gene050791	MS.gene055232	0.843077	1.75E-58	-1.69E-46
MS.gene050791	MS.gene056917	0.834039	3.77E-56	-1.69E-46
MS.gene050791	MS.gene057092	0.841591	4.33E-58	-1.69E-46
MS.gene050791	MS.gene057272	0.913867	3.74E-84	-1.69E-46
MS.gene050791	MS.gene057641	0.842002	3.37E-58	-1.69E-46
MS.gene050791	MS.gene057643	0.859045	5.43E-63	-1.69E-46
MS.gene050791	MS.gene060483	0.847905	8.60E-60	-1.69E-46
MS.gene050791	MS.gene06169	0.84935	3.42E-60	-1.69E-46
MS.gene050791	MS.gene063093	0.824123	9.57E-54	-1.69E-46
MS.gene050791	MS.gene06581	0.919359	4.97E-87	-1.69E-46
MS.gene050791	MS.gene06583	0.908712	1.27E-81	-1.69E-46
MS.gene050791	MS.gene065917	0.851756	7.21E-61	-1.69E-46
MS.gene050791	MS.gene06617	0.803652	3.15E-49	-1.69E-46
MS.gene050791	MS.gene066811	0.830261	3.24E-55	-1.69E-46
MS.gene050791	MS.gene067141	0.823618	1.26E-53	-1.69E-46
MS.gene050791	MS.gene067331	0.861397	1.06E-63	-1.69E-46
MS.gene050791	MS.gene06803	0.930775	1.00E-93	-1.69E-46
MS.gene050791	MS.gene06833	0.803747	3.01E-49	-1.69E-46
MS.gene050791	MS.gene07018	0.836388	9.64E-57	-1.69E-46
MS.gene050791	MS.gene070946	0.889737	1.85E-73	-1.69E-46
MS.gene050791	MS.gene071364	0.804287	2.32E-49	-1.69E-46
MS.gene050791	MS.gene072093	0.834158	3.52E-56	-1.69E-46
MS.gene050791	MS.gene072503	0.890024	1.43E-73	-1.69E-46
MS.gene050791	MS.gene072589	0.984066	1.72E-159	-1.69E-46
MS.gene050791	MS.gene072591	0.987705	3.11E-171	-1.69E-46
MS.gene050791	MS.gene073358	0.802506	5.43E-49	-1.69E-46
MS.gene050791	MS.gene08521	0.897584	1.22E-76	-1.69E-46
MS.gene050791	MS.gene08869	0.844986	5.38E-59	-1.69E-46
MS.gene050791	MS.gene08870	0.886968	2.15E-72	-1.69E-46
MS.gene050791	MS.gene08871	0.897163	1.83E-76	-1.69E-46
MS.gene050791	MS.gene09761	0.841091	5.86E-58	-1.69E-46
MS.gene050791	MS.gene09779	0.839479	1.55E-57	-1.69E-46
MS.gene050791	MS.gene09780	0.827659	1.38E-54	-1.69E-46
MS.gene050791	MS.gene20153	0.894788	1.77E-75	-1.69E-46
MS.gene050791	MS.gene20158	0.800165	1.64E-48	-1.69E-46
MS.gene050791	MS.gene20766	0.815319	9.83E-52	-1.69E-46
MS.gene050791	MS.gene22507	0.828186	1.03E-54	-1.69E-46
MS.gene050791	MS.gene22784	0.988891	7.88E-176	-1.69E-46
MS.gene050791	MS.gene23031	0.868819	4.92E-66	-1.69E-46
MS.gene050791	MS.gene23303	0.853656	2.07E-61	-1.69E-46
MS.gene050791	MS.gene23314	0.808908	2.46E-50	-1.69E-46
MS.gene050791	MS.gene23437	0.839331	1.69E-57	-1.69E-46
MS.gene050791	MS.gene24232	0.853846	1.82E-61	-1.69E-46
MS.gene050791	MS.gene24639	0.921495	3.33E-88	-1.69E-46
MS.gene050791	MS.gene25236	0.843064	1.76E-58	-1.69E-46
MS.gene050791	MS.gene25238	0.827353	1.64E-54	-1.69E-46
MS.gene050791	MS.gene25639	0.843872	1.07E-58	-1.69E-46
MS.gene050791	MS.gene25903	0.85675	2.61E-62	-1.69E-46
MS.gene050791	MS.gene26343	0.861195	1.22E-63	-1.69E-46
MS.gene050791	MS.gene26707	0.844498	7.28E-59	-1.69E-46
MS.gene050791	MS.gene27265	0.855093	7.95E-62	-1.69E-46
MS.gene050791	MS.gene28147	0.903613	2.89E-79	-1.69E-46
MS.gene050791	MS.gene31039	0.848425	6.18E-60	-1.69E-46
MS.gene050791	MS.gene31177	0.82306	1.70E-53	-1.69E-46
MS.gene050791	MS.gene31991	0.893878	4.17E-75	-1.69E-46
MS.gene050791	MS.gene32591	0.816168	6.35E-52	-1.69E-46
MS.gene050791	MS.gene34372	0.901752	1.95E-78	-1.69E-46
MS.gene050791	MS.gene37037	0.848252	6.90E-60	-1.69E-46
MS.gene050791	MS.gene38035	0.842161	3.06E-58	-1.69E-46
MS.gene050791	MS.gene38222	0.875363	3.27E-68	-1.69E-46
MS.gene050791	MS.gene39485	0.810545	1.09E-50	-1.69E-46
MS.gene050791	MS.gene40831	0.828181	1.04E-54	-1.69E-46
MS.gene050791	MS.gene41726	0.80701	6.23E-50	-1.69E-46
MS.gene050791	MS.gene43070	0.871551	6.27E-67	-1.69E-46
MS.gene050791	MS.gene43071	0.886503	3.23E-72	-1.69E-46
MS.gene050791	MS.gene45470	0.824571	7.51E-54	-1.69E-46
MS.gene050791	MS.gene46387	0.877974	4.08E-69	-1.69E-46
MS.gene050791	MS.gene46903	0.829142	6.07E-55	-1.69E-46
MS.gene050791	MS.gene46907	0.849998	2.26E-60	-1.69E-46
MS.gene050791	MS.gene49109	0.839447	1.58E-57	-1.69E-46
MS.gene050791	MS.gene50640	0.882679	8.51E-71	-1.69E-46
MS.gene050791	MS.gene50756	0.857576	1.49E-62	-1.69E-46
MS.gene050791	MS.gene50758	0.869557	2.83E-66	-1.69E-46
MS.gene050791	MS.gene51534	0.824142	9.48E-54	-1.69E-46
MS.gene050791	MS.gene52105	0.810404	1.17E-50	-1.69E-46
MS.gene050791	MS.gene52415	0.831593	1.53E-55	-1.69E-46
MS.gene050791	MS.gene52738	0.816424	5.57E-52	-1.69E-46
MS.gene050791	MS.gene53465	0.819218	1.30E-52	-1.69E-46
MS.gene050791	MS.gene54437	0.81507	1.12E-51	-1.69E-46
MS.gene050791	MS.gene55619	0.83464	2.67E-56	-1.69E-46
MS.gene050791	MS.gene55890	0.918258	1.95E-86	-1.69E-46
MS.gene050791	MS.gene58497	0.805935	1.05E-49	-1.69E-46
MS.gene050791	MS.gene59228	0.871949	4.63E-67	-1.69E-46
MS.gene050791	MS.gene59230	0.874513	6.37E-68	-1.69E-46
MS.gene050791	MS.gene59609	0.90477	8.67E-80	-1.69E-46
MS.gene050791	MS.gene59873	0.802789	4.75E-49	-1.69E-46
MS.gene050791	MS.gene60693	0.809759	1.61E-50	-1.69E-46
MS.gene050791	MS.gene61251	0.828467	8.85E-55	-1.69E-46
MS.gene050791	MS.gene62561	0.807381	5.20E-50	-1.69E-46
MS.gene050791	MS.gene62620	0.80125	9.84E-49	-1.69E-46
MS.gene050791	MS.gene62791	0.869133	3.89E-66	-1.69E-46
MS.gene050791	MS.gene63450	0.825994	3.46E-54	-1.69E-46
MS.gene050791	MS.gene64754	0.803082	4.13E-49	-1.69E-46
MS.gene050791	MS.gene68740	0.847404	1.18E-59	-1.69E-46
MS.gene050791	MS.gene70316	0.871209	8.14E-67	-1.69E-46
MS.gene050791	MS.gene70579	0.846796	1.73E-59	-1.69E-46
MS.gene050791	MS.gene72382	0.891851	2.72E-74	-1.69E-46
MS.gene050791	MS.gene73000	0.873943	9.93E-68	-1.69E-46
MS.gene050791	MS.gene76031	0.857667	1.40E-62	-1.69E-46
MS.gene050791	MS.gene79721	0.897338	1.55E-76	-1.69E-46
MS.gene050791	MS.gene80714	0.811422	7.06E-51	-1.69E-46
MS.gene050791	MS.gene81099	0.872951	2.14E-67	-1.69E-46
MS.gene050791	MS.gene82009	0.802856	4.60E-49	-1.69E-46
MS.gene050791	MS.gene82038	0.915576	4.99E-85	-1.69E-46
MS.gene050791	MS.gene82545	0.917893	3.05E-86	-1.69E-46
MS.gene050791	MS.gene86675	0.819331	1.23E-52	-1.69E-46
MS.gene050791	MS.gene88081	0.825526	4.47E-54	-1.69E-46
MS.gene050791	MS.gene88918	0.834152	3.53E-56	-1.69E-46
MS.gene050791	MS.gene90945	0.840747	7.22E-58	-1.69E-46
MS.gene050791	MS.gene91826	0.834012	3.83E-56	-1.69E-46
MS.gene050791	MS.gene92142	0.832832	7.55E-56	-1.69E-46
MS.gene050791	MS.gene95803	0.871381	7.14E-67	-1.69E-46
MS.gene050791	MS.gene96225	0.911149	8.43E-83	-1.69E-46
MS.gene050791	MS.gene96825	0.811353	7.30E-51	-1.69E-46
MS.gene050791	MS.gene98171	0.879346	1.34E-69	-1.69E-46
MS.gene050791	MS.gene99744	0.802836	4.64E-49	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene050791	MS.gene92940	PPI
MS.gene050791	MS.gene005149	PPI
MS.gene22784	MS.gene050791	PPI
MS.gene69925	MS.gene050791	PPI
MS.gene050791	MS.gene072591	PPI
MS.gene072589	MS.gene050791	PPI
MS.gene028085	MS.gene050791	PPI
MS.gene050791	MS.gene84989	PPI
MS.gene050791	MS.gene44018	PPI
MS.gene050791	MS.gene72826	PPI
MS.gene050791	MS.gene70808	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050791.t1	MTR_7g111590	99.034	207	2	0	1	207	1	207	2.65e-151	418
MS.gene050791.t1	MTR_5g026750	98.551	207	3	0	1	207	1	207	1.30e-150	416
MS.gene050791.t1	MTR_1g022165	97.585	207	5	0	1	207	1	207	3.13e-149	413
MS.gene050791.t1	MTR_7g111590	98.068	207	2	1	1	207	1	205	7.49e-148	409
MS.gene050791.t1	MTR_8g071810	64.198	81	29	0	104	184	67	147	3.47e-27	101

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050791.t1	AT3G49010	87.435	191	24	0	2	192	1	191	2.38e-126	355
MS.gene050791.t1	AT3G49010	87.435	191	24	0	2	192	1	191	2.38e-126	355
MS.gene050791.t1	AT3G49010	87.435	191	24	0	2	192	1	191	2.38e-126	355
MS.gene050791.t1	AT3G49010	87.435	191	24	0	2	192	1	191	2.38e-126	355
MS.gene050791.t1	AT3G49010	87.435	191	24	0	2	192	1	191	2.38e-126	355
MS.gene050791.t1	AT3G49010	86.387	191	24	1	2	192	1	189	4.01e-123	347
MS.gene050791.t1	AT5G23900	85.484	186	27	0	2	187	1	186	1.65e-119	338
MS.gene050791.t1	AT3G48960	77.083	192	44	0	2	193	1	192	4.54e-109	311
MS.gene050791.t1	AT3G49010	61.257	191	21	1	2	192	1	138	3.76e-78	231

Find 59 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGAAATGAAGGCATTTA+AGG	0.167170	7.4:-4737825	MS.gene050791:CDS
CGTCTTCTCGTCTTCCTTGC+AGG	0.238053	7.4:+4739510	None:intergenic
TTGACCTTGCGTGCACGTCT+TGG	0.342253	7.4:+4738089	None:intergenic
GCGAACAAACAAACGCCATT+TGG	0.357834	7.4:-4737780	MS.gene050791:CDS
CGAACAAACAAACGCCATTT+GGG	0.361720	7.4:-4737779	MS.gene050791:CDS
AGTGGTCCAGCTGTAGGCCT+TGG	0.374314	7.4:+4739340	None:intergenic
TGCTTGCGGAAGTGTTCATT+AGG	0.386045	7.4:+4739567	None:intergenic
TGACCTTGCGTGCACGTCTT+GGG	0.387927	7.4:+4738090	None:intergenic
TGAGTCTGTCCATGAACAAT+AGG	0.403921	7.4:+4739313	None:intergenic
AGAAATACAACATGAAACTA+AGG	0.404501	7.4:-4739291	MS.gene050791:CDS
CTCGGCAGCCCTCTTCAGTC+TGG	0.408929	7.4:+4737754	None:intergenic
CCACTCAGGCCTATTGTTCA+TGG	0.419917	7.4:-4739322	MS.gene050791:CDS
CTTCTCCCTTGAGGAGTTGA+AGG	0.436371	7.4:-4739257	MS.gene050791:intron
GTAGCATTTGCTAGTTCCTC+AGG	0.441712	7.4:+4737914	None:intergenic
TCTTCAGTCTGGCACCCAAA+TGG	0.461938	7.4:+4737765	None:intergenic
GCTTGCGGAAGTGTTCATTA+GGG	0.463786	7.4:+4739568	None:intergenic
TAAGATTACAAATGAAATGA+AGG	0.465235	7.4:-4737834	MS.gene050791:CDS
GATGGCTTCTCCCTCACAAT+TGG	0.470493	7.4:+4737869	None:intergenic
GAGGGCTGCCGAGGCAGAGA+AGG	0.474906	7.4:-4737744	MS.gene050791:CDS
CTTGTCTTCCTTCTCTGCCT+CGG	0.482926	7.4:+4737736	None:intergenic
GTGGTCCAGCTGTAGGCCTT+GGG	0.485461	7.4:+4739341	None:intergenic
TCGCCGCAAGAACCGATCCT+TGG	0.500226	7.4:-4738171	MS.gene050791:CDS
CTTGCAGACCTTCCAAGGAT+CGG	0.513686	7.4:+4738159	None:intergenic
GCAAATGCTACACAGGTTCA+AGG	0.515568	7.4:-4737902	MS.gene050791:CDS
TTCTCGTCTTCCTTGCAGGT+TGG	0.518598	7.4:+4739514	None:intergenic
TCGACAGAAATACCAATAGT+TGG	0.524260	7.4:+4738197	None:intergenic
TGTTTACCTTCAACTCCTCA+AGG	0.536157	7.4:+4739251	None:intergenic
GTTGGCTTGCAGACCTTCCA+AGG	0.544997	7.4:+4738154	None:intergenic
CTTCCCAAGACGTGCACGCA+AGG	0.546682	7.4:-4738093	MS.gene050791:CDS
ATGAACACTTCCGCAAGCAT+TGG	0.548841	7.4:-4739563	MS.gene050791:CDS
ATGAAACTAAGGGCTGGTAA+AGG	0.560135	7.4:-4739280	MS.gene050791:CDS
GAAATACAACATGAAACTAA+GGG	0.563936	7.4:-4739290	MS.gene050791:CDS
AGGAAGACGAGAAGACGCTT+AGG	0.564086	7.4:-4739504	MS.gene050791:intron
TCTTGGGAAGACGACCAACT+TGG	0.564678	7.4:+4738106	None:intergenic
AAGACGTGCACGCAAGGTCA+AGG	0.565249	7.4:-4738087	MS.gene050791:intron
TACAACATGAAACTAAGGGC+TGG	0.568361	7.4:-4739286	MS.gene050791:CDS
TTCATACTTACCAATTGTGA+GGG	0.574179	7.4:-4737879	MS.gene050791:CDS
CAGACTGAAGAGGGCTGCCG+AGG	0.574750	7.4:-4737753	MS.gene050791:CDS
CGCAAGAACCGATCCTTGGA+AGG	0.582614	7.4:-4738167	MS.gene050791:CDS
GTCTGCAAGCCAACGTGCAG+AGG	0.583501	7.4:-4738145	MS.gene050791:CDS
CTTCCAAGGATCGGTTCTTG+CGG	0.585506	7.4:+4738168	None:intergenic
TGGTAAAGGCTTCTCCCTTG+AGG	0.585769	7.4:-4739266	MS.gene050791:CDS
AGGCCTTGGGAAAATCTTCA+CGG	0.587332	7.4:+4739354	None:intergenic
GTTCATACTTACCAATTGTG+AGG	0.591073	7.4:-4737880	MS.gene050791:CDS
ATTTGGGTGCCAGACTGAAG+AGG	0.592370	7.4:-4737763	MS.gene050791:CDS
GGCTGGTGATTCCACTCCTG+AGG	0.595885	7.4:-4737930	MS.gene050791:CDS
GAAGACATACAAGGCCAAGT+TGG	0.599063	7.4:-4738120	MS.gene050791:CDS
GGCCTACAGCTGGACCACTC+AGG	0.602263	7.4:-4739336	MS.gene050791:CDS
ATCTTAACAAGCTCTACAGA+TGG	0.608105	7.4:+4737851	None:intergenic
TTTGGGTGCCAGACTGAAGA+GGG	0.608247	7.4:-4737762	MS.gene050791:CDS
GGCAAAACTATGTCAAGACA+TGG	0.612396	7.4:-4739542	MS.gene050791:CDS
ATTTGCTAGTTCCTCAGGAG+TGG	0.614969	7.4:+4737919	None:intergenic
TGTCTTCAGCCTCTGCACGT+TGG	0.625495	7.4:+4738136	None:intergenic
GTTTACCTTCAACTCCTCAA+GGG	0.627618	7.4:+4739252	None:intergenic
GGCCTGAGTGGTCCAGCTGT+AGG	0.635974	7.4:+4739334	None:intergenic
GGAACTAGCAAATGCTACAC+AGG	0.641783	7.4:-4737909	MS.gene050791:CDS
CATGGTTTAACCAACCTGCA+AGG	0.654567	7.4:-4739524	MS.gene050791:CDS
CCATGAACAATAGGCCTGAG+TGG	0.655173	7.4:+4739322	None:intergenic
GCAGAGGCTGAAGACATACA+AGG	0.685449	7.4:-4738129	MS.gene050791:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TAAATTATAATAATATCATC+AGG	+	chr7.4:4738427-4738446	None:intergenic	10.0%
!!	AAAAACAAACTCAATTAAAT+TGG	+	chr7.4:4738612-4738631	None:intergenic	15.0%
!!	TTTAAGAATATGTAACAAAA+TGG	-	chr7.4:4738339-4738358	MS.gene050791:intron	15.0%
!!!	AAATTCTAGATATTTACTTT+TGG	-	chr7.4:4738174-4738193	MS.gene050791:CDS	15.0%
!!!	TTAATTGAGTTTGTTTTTTA+AGG	-	chr7.4:4738614-4738633	MS.gene050791:intron	15.0%
!!!	TTTCTTCTATTTTATAATGT+AGG	-	chr7.4:4739075-4739094	MS.gene050791:intron	15.0%
!!	AAACTAAAAACTCTTAAAAC+CGG	+	chr7.4:4738709-4738728	None:intergenic	20.0%
!!	TAAGAAATAAACCATTGAAA+AGG	+	chr7.4:4739055-4739074	None:intergenic	20.0%
!!	TAAGATTACAAATGAAATGA+AGG	-	chr7.4:4739487-4739506	MS.gene050791:intron	20.0%
!!!	AAGAAATCATGGATTATATA+AGG	+	chr7.4:4738825-4738844	None:intergenic	20.0%
!!!	TATGACCTTTTTCTTAATTT+TGG	-	chr7.4:4739288-4739307	MS.gene050791:CDS	20.0%
!!!	TTTTAGCATTATCAAAAAAG+TGG	-	chr7.4:4738138-4738157	MS.gene050791:CDS	20.0%
!!!	TTTTTACTTTACCTTTTCAA+TGG	-	chr7.4:4739041-4739060	MS.gene050791:intron	20.0%
!	AAATCTACTTTAGTTGTTAC+AGG	-	chr7.4:4738748-4738767	MS.gene050791:intron	25.0%
!	AAATTGCAAGTCACTAAAAA+CGG	-	chr7.4:4738237-4738256	MS.gene050791:intron	25.0%
!	AACTAAAAACTCTTAAAACC+GGG	+	chr7.4:4738708-4738727	None:intergenic	25.0%
!	AGAAATACAACATGAAACTA+AGG	-	chr7.4:4738030-4738049	MS.gene050791:intron	25.0%
!	ATAGGTAAAAATACTCCATA+AGG	+	chr7.4:4738577-4738596	None:intergenic	25.0%
!	GAAATACAACATGAAACTAA+GGG	-	chr7.4:4738031-4738050	MS.gene050791:intron	25.0%
!	GCATTATTCTTAATTTCTTC+TGG	-	chr7.4:4739350-4739369	MS.gene050791:CDS	25.0%
!	GTGTATAAGTAAAGAAATCA+TGG	+	chr7.4:4738836-4738855	None:intergenic	25.0%
!	TTCAAATTTATCAGCAATGA+CGG	+	chr7.4:4739316-4739335	None:intergenic	25.0%
!!	AAATCATGGATTATATAAGG+AGG	+	chr7.4:4738822-4738841	None:intergenic	25.0%
!!	AATATGATTAGTGTTTTCAG+TGG	+	chr7.4:4738858-4738877	None:intergenic	25.0%
!!	ACAACTAAAGTAGATTTTGA+TGG	+	chr7.4:4738745-4738764	None:intergenic	25.0%
!!	TTTGATTTACTTGACTTGAT+GGG	-	chr7.4:4737914-4737933	MS.gene050791:CDS	25.0%
!!!	AAATGAAATGAAGGCATTTA+AGG	-	chr7.4:4739496-4739515	MS.gene050791:intron	25.0%
!!!	AGTATTTTTACCTATAGGAT+TGG	-	chr7.4:4738582-4738601	MS.gene050791:intron	25.0%
!!!	TATGGAGTATTTTTACCTAT+AGG	-	chr7.4:4738577-4738596	MS.gene050791:intron	25.0%
	CGGTACCAAAATTAAGAAAA+AGG	+	chr7.4:4739296-4739315	None:intergenic	30.0%
	GACAGAATTGAATATGAAAC+AGG	+	chr7.4:4738926-4738945	None:intergenic	30.0%
	TAAAAATACTCCATAAGGAC+AGG	+	chr7.4:4738572-4738591	None:intergenic	30.0%
	TCACAACTGAAGAGAATATT+CGG	+	chr7.4:4738903-4738922	None:intergenic	30.0%
	TTCATACTTACCAATTGTGA+GGG	-	chr7.4:4739442-4739461	MS.gene050791:intron	30.0%
!	CTTTGATTTACTTGACTTGA+TGG	-	chr7.4:4737913-4737932	MS.gene050791:CDS	30.0%
!	TATTTTATAATGTAGGCTGC+TGG	-	chr7.4:4739082-4739101	MS.gene050791:intron	30.0%
!!!	AGTTTGTTTTTTAAGGCCTA+TGG	-	chr7.4:4738621-4738640	MS.gene050791:intron	30.0%
	AACCCTGACAATCAAGTTAT+AGG	-	chr7.4:4738671-4738690	MS.gene050791:intron	35.0%
	AGACCTATAACTTGATTGTC+AGG	+	chr7.4:4738677-4738696	None:intergenic	35.0%
	ATCTTAACAAGCTCTACAGA+TGG	+	chr7.4:4739473-4739492	None:intergenic	35.0%
	CAAGCTCTATGTGAAATTAC+AGG	-	chr7.4:4738394-4738413	MS.gene050791:intron	35.0%
	CAGCCTGGAAATAAAAAACA+GGG	+	chr7.4:4739376-4739395	None:intergenic	35.0%
	GACCTATAACTTGATTGTCA+GGG	+	chr7.4:4738676-4738695	None:intergenic	35.0%
	GTTCATACTTACCAATTGTG+AGG	-	chr7.4:4739441-4739460	MS.gene050791:intron	35.0%
	TACTAGATGCACTCAAACTA+AGG	+	chr7.4:4738984-4739003	None:intergenic	35.0%
	TCGACAGAAATACCAATAGT+TGG	+	chr7.4:4739127-4739146	None:intergenic	35.0%
!	AAAAAGCTTGCTCCAACTAT+TGG	-	chr7.4:4739112-4739131	MS.gene050791:intron	35.0%
!	AATAGTTGGAGCAAGCTTTT+TGG	+	chr7.4:4739113-4739132	None:intergenic	35.0%
!	ATAGTTGGAGCAAGCTTTTT+GGG	+	chr7.4:4739112-4739131	None:intergenic	35.0%
	AAAAACTCTTAAAACCGGGC+AGG	+	chr7.4:4738704-4738723	None:intergenic	40.0%
	AAAACTCTTAAAACCGGGCA+GGG	+	chr7.4:4738703-4738722	None:intergenic	40.0%
	AATACTCCATAAGGACAGGT+TGG	+	chr7.4:4738568-4738587	None:intergenic	40.0%
	ACTTGACAACAGGTTTGTAC+TGG	+	chr7.4:4738542-4738561	None:intergenic	40.0%
	AGTACAAACCTGTTGTCAAG+TGG	-	chr7.4:4738541-4738560	MS.gene050791:intron	40.0%
	CCAGCCTGGAAATAAAAAAC+AGG	+	chr7.4:4739377-4739396	None:intergenic	40.0%
	CGAACAAACAAACGCCATTT+GGG	-	chr7.4:4739542-4739561	MS.gene050791:CDS	40.0%
	GCAAACGCAATTCCATGTAT+TGG	+	chr7.4:4738502-4738521	None:intergenic	40.0%
	GGCAAAACTATGTCAAGACA+TGG	-	chr7.4:4737779-4737798	MS.gene050791:CDS	40.0%
	GGTCAAGGTAATGCAAATTG+CGG	-	chr7.4:4739249-4739268	MS.gene050791:intron	40.0%
	GTTTACCTTCAACTCCTCAA+GGG	+	chr7.4:4738072-4738091	None:intergenic	40.0%
	TACAACATGAAACTAAGGGC+TGG	-	chr7.4:4738035-4738054	MS.gene050791:intron	40.0%
	TGAGTCTGTCCATGAACAAT+AGG	+	chr7.4:4738011-4738030	None:intergenic	40.0%
	TGATTGTCAGGGTTCCTAAA+CGG	+	chr7.4:4738665-4738684	None:intergenic	40.0%
	TGTTTACCTTCAACTCCTCA+AGG	+	chr7.4:4738073-4738092	None:intergenic	40.0%
	TTGCAATCCACACCAATACA+TGG	-	chr7.4:4738487-4738506	MS.gene050791:intron	40.0%
!	AATTGGCTAGCCAATCCTAT+AGG	+	chr7.4:4738595-4738614	None:intergenic	40.0%
!	ATGAAACTAAGGGCTGGTAA+AGG	-	chr7.4:4738041-4738060	MS.gene050791:intron	40.0%
!	ATTTTCAGCTCGTCAGAAGA+AGG	-	chr7.4:4737944-4737963	MS.gene050791:intron	40.0%
!	TGTATTGGTGTGGATTGCAA+AGG	+	chr7.4:4738487-4738506	None:intergenic	40.0%
!!	CATAGTTTTGCCAATGCTTG+CGG	+	chr7.4:4737771-4737790	None:intergenic	40.0%
!!	GTAGATTTTGATGGTCATGC+TGG	+	chr7.4:4738736-4738755	None:intergenic	40.0%
!!!	CCTGTTTTTTATTTCCAGGC+TGG	-	chr7.4:4739374-4739393	MS.gene050791:intron	40.0%
!!!	TGGCCCTGTTTTTTATTTCC+AGG	-	chr7.4:4739370-4739389	MS.gene050791:CDS	40.0%
!!!	TGTTTTTTAAGGCCTATGGC+TGG	-	chr7.4:4738625-4738644	MS.gene050791:intron	40.0%
	AGGCCTTGGGAAAATCTTCA+CGG	+	chr7.4:4737970-4737989	None:intergenic	45.0%
	ATGAACACTTCCGCAAGCAT+TGG	-	chr7.4:4737758-4737777	MS.gene050791:CDS	45.0%
	CACCAATCTCCAATGTACGT+AGG	-	chr7.4:4738792-4738811	MS.gene050791:intron	45.0%
	CACCTACGTACATTGGAGAT+TGG	+	chr7.4:4738797-4738816	None:intergenic	45.0%
	CATGGTTTAACCAACCTGCA+AGG	-	chr7.4:4737797-4737816	MS.gene050791:CDS	45.0%
	CCTAAACGGCATACGAGTTA+AGG	+	chr7.4:4738651-4738670	None:intergenic	45.0%
	GAAGACATACAAGGCCAAGT+TGG	-	chr7.4:4739201-4739220	MS.gene050791:intron	45.0%
	GCAAATGCTACACAGGTTCA+AGG	-	chr7.4:4739419-4739438	MS.gene050791:intron	45.0%
	GCGAACAAACAAACGCCATT+TGG	-	chr7.4:4739541-4739560	MS.gene050791:CDS	45.0%
	GGAACTAGCAAATGCTACAC+AGG	-	chr7.4:4739412-4739431	MS.gene050791:intron	45.0%
!	ATTTGCTAGTTCCTCAGGAG+TGG	+	chr7.4:4739405-4739424	None:intergenic	45.0%
!	CCTTAACTCGTATGCCGTTT+AGG	-	chr7.4:4738648-4738667	MS.gene050791:intron	45.0%
!	CGCAATTCCATGTATTGGTG+TGG	+	chr7.4:4738497-4738516	None:intergenic	45.0%
!	GTAGCATTTGCTAGTTCCTC+AGG	+	chr7.4:4739410-4739429	None:intergenic	45.0%
!!	GCTTGCGGAAGTGTTCATTA+GGG	+	chr7.4:4737756-4737775	None:intergenic	45.0%
!!	TGCTTGCGGAAGTGTTCATT+AGG	+	chr7.4:4737757-4737776	None:intergenic	45.0%
	AGGAAGACGAGAAGACGCTT+AGG	-	chr7.4:4737817-4737836	MS.gene050791:CDS	50.0%
	AGTGGACCAACCTGTCCTTA+TGG	-	chr7.4:4738559-4738578	MS.gene050791:intron	50.0%
	ATTTGGGTGCCAGACTGAAG+AGG	-	chr7.4:4739558-4739577	MS.gene050791:CDS	50.0%
	CCACTCAGGCCTATTGTTCA+TGG	-	chr7.4:4737999-4738018	MS.gene050791:intron	50.0%
	CCATGAACAATAGGCCTGAG+TGG	+	chr7.4:4738002-4738021	None:intergenic	50.0%
	CTTCTCCCTTGAGGAGTTGA+AGG	-	chr7.4:4738064-4738083	MS.gene050791:intron	50.0%
	CTTGCAGACCTTCCAAGGAT+CGG	+	chr7.4:4739165-4739184	None:intergenic	50.0%
	CTTGTCTTCCTTCTCTGCCT+CGG	+	chr7.4:4739588-4739607	None:intergenic	50.0%
	GATGGCTTCTCCCTCACAAT+TGG	+	chr7.4:4739455-4739474	None:intergenic	50.0%
	GCAGAGGCTGAAGACATACA+AGG	-	chr7.4:4739192-4739211	MS.gene050791:intron	50.0%
	GGAGGTTCACCTACGTACAT+TGG	+	chr7.4:4738804-4738823	None:intergenic	50.0%
	TACGAGTTAAGGCCAGCCAT+AGG	+	chr7.4:4738640-4738659	None:intergenic	50.0%
	TCTTCAGTCTGGCACCCAAA+TGG	+	chr7.4:4739559-4739578	None:intergenic	50.0%
	TCTTGGGAAGACGACCAACT+TGG	+	chr7.4:4739218-4739237	None:intergenic	50.0%
	TGGTAAAGGCTTCTCCCTTG+AGG	-	chr7.4:4738055-4738074	MS.gene050791:intron	50.0%
	TTATAGGTCTATGCCCTGCC+CGG	-	chr7.4:4738687-4738706	MS.gene050791:intron	50.0%
	TTCTCGTCTTCCTTGCAGGT+TGG	+	chr7.4:4737810-4737829	None:intergenic	50.0%
	TTTGGGTGCCAGACTGAAGA+GGG	-	chr7.4:4739559-4739578	MS.gene050791:CDS	50.0%
!	AGGCCGTGAAGATTTTCCCA+AGG	-	chr7.4:4737964-4737983	MS.gene050791:intron	50.0%
!	AGGTTGGTCCACTTGACAAC+AGG	+	chr7.4:4738552-4738571	None:intergenic	50.0%
!	ATTTTCCCAAGGCCTACAGC+TGG	-	chr7.4:4737975-4737994	MS.gene050791:intron	50.0%
!	CTTCCAAGGATCGGTTCTTG+CGG	+	chr7.4:4739156-4739175	None:intergenic	50.0%
	AAGACGTGCACGCAAGGTCA+AGG	-	chr7.4:4739234-4739253	MS.gene050791:intron	55.0%
	CGCAAGAACCGATCCTTGGA+AGG	-	chr7.4:4739154-4739173	MS.gene050791:intron	55.0%
	CGTCTTCTCGTCTTCCTTGC+AGG	+	chr7.4:4737814-4737833	None:intergenic	55.0%
	TGACCTTGCGTGCACGTCTT+GGG	+	chr7.4:4739234-4739253	None:intergenic	55.0%
	TGTCTTCAGCCTCTGCACGT+TGG	+	chr7.4:4739188-4739207	None:intergenic	55.0%
	TTGACCTTGCGTGCACGTCT+TGG	+	chr7.4:4739235-4739254	None:intergenic	55.0%
!!	GTTGGCTTGCAGACCTTCCA+AGG	+	chr7.4:4739170-4739189	None:intergenic	55.0%
	AGTGGTCCAGCTGTAGGCCT+TGG	+	chr7.4:4737984-4738003	None:intergenic	60.0%
	CAGGAGTGGAATCACCAGCC+TGG	+	chr7.4:4739391-4739410	None:intergenic	60.0%
	CTTCCCAAGACGTGCACGCA+AGG	-	chr7.4:4739228-4739247	MS.gene050791:intron	60.0%
	GGCTGGTGATTCCACTCCTG+AGG	-	chr7.4:4739391-4739410	MS.gene050791:intron	60.0%
	GTCTGCAAGCCAACGTGCAG+AGG	-	chr7.4:4739176-4739195	MS.gene050791:intron	60.0%
	GTGGTCCAGCTGTAGGCCTT+GGG	+	chr7.4:4737983-4738002	None:intergenic	60.0%
	TCGCCGCAAGAACCGATCCT+TGG	-	chr7.4:4739150-4739169	MS.gene050791:intron	60.0%
	CAGACTGAAGAGGGCTGCCG+AGG	-	chr7.4:4739568-4739587	MS.gene050791:CDS	65.0%
	CTCGGCAGCCCTCTTCAGTC+TGG	+	chr7.4:4739570-4739589	None:intergenic	65.0%
	GGCCTACAGCTGGACCACTC+AGG	-	chr7.4:4737985-4738004	MS.gene050791:intron	65.0%
	GGCCTGAGTGGTCCAGCTGT+AGG	+	chr7.4:4737990-4738009	None:intergenic	65.0%
	GAGGGCTGCCGAGGCAGAGA+AGG	-	chr7.4:4739577-4739596	MS.gene050791:CDS	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	4737730	4739613	4737730	ID=MS.gene050791
chr7.4	mRNA	4737730	4739613	4737730	ID=MS.gene050791.t1;Parent=MS.gene050791
chr7.4	exon	4739505	4739613	4739505	ID=MS.gene050791.t1.exon1;Parent=MS.gene050791.t1
chr7.4	CDS	4739505	4739613	4739505	ID=cds.MS.gene050791.t1;Parent=MS.gene050791.t1
chr7.4	exon	4739258	4739391	4739258	ID=MS.gene050791.t1.exon2;Parent=MS.gene050791.t1
chr7.4	CDS	4739258	4739391	4739258	ID=cds.MS.gene050791.t1;Parent=MS.gene050791.t1
chr7.4	exon	4738088	4738246	4738088	ID=MS.gene050791.t1.exon3;Parent=MS.gene050791.t1
chr7.4	CDS	4738088	4738246	4738088	ID=cds.MS.gene050791.t1;Parent=MS.gene050791.t1
chr7.4	exon	4737730	4737951	4737730	ID=MS.gene050791.t1.exon4;Parent=MS.gene050791.t1
chr7.4	CDS	4737730	4737951	4737730	ID=cds.MS.gene050791.t1;Parent=MS.gene050791.t1

Gene Sequence

>MS.gene050791

ATGGTGAAGCATAACAATGTTATCCCTAATGAACACTTCCGCAAGCATTGGCAAAACTATGTCAAGACATGGTTTAACCAACCTGCAAGGAAGACGAGAAGACGCTTAGGTAATTTTCTCTATAATTCTATTATTTTGATTAATTAAGTTTTATGTATTGAAAATTGAAAATAAAAATGTTAACTTTGATTTACTTGACTTGATGGGTTGTTGCATTTTCAGCTCGTCAGAAGAAGGCCGTGAAGATTTTCCCAAGGCCTACAGCTGGACCACTCAGGCCTATTGTTCATGGACAGACTCAGAAATACAACATGAAACTAAGGGCTGGTAAAGGCTTCTCCCTTGAGGAGTTGAAGGTAAACATCTTTAACTTCTGTGATTTTTCTTTTCGATGTAATTTATTGAACGTTTTAGCATTATCAAAAAAGTGGTTTTGATGCTCTAAAATTCTAGATATTTACTTTTGGAGATTTAAAGAAAATATAGAAGCTGTTGTGTTTGTTTACGAAATTGCAAGTCACTAAAAACGGTTATTGAAAATGATTTTCAAGAGAAGCTACGCAAAACAGCTTCTCATTTGAAGCTTTGATTATTAACATGTTTTCATTTTTTAAGAATATGTAACAAAATGGATGAAAACTTTTGAAAGTGAATTTTTTACAAACAAGCTCTATGTGAAATTACAGGAACTCTACCTGATGATATTATTATAATTTAAAAGATATAATCTAATTTTCTGTTTGATGTACTTCTGCCTTTGCAATCCACACCAATACATGGAATTGCGTTTGCAAAATTCTCTCTTAATTCCAGTACAAACCTGTTGTCAAGTGGACCAACCTGTCCTTATGGAGTATTTTTACCTATAGGATTGGCTAGCCAATTTAATTGAGTTTGTTTTTTAAGGCCTATGGCTGGCCTTAACTCGTATGCCGTTTAGGAACCCTGACAATCAAGTTATAGGTCTATGCCCTGCCCGGTTTTAAGAGTTTTTAGTTTTTATCCAGCATGACCATCAAAATCTACTTTAGTTGTTACAGGACTATTATACTTATGATATTACACCAATCTCCAATGTACGTAGGTGAACCTCCTTATATAATCCATGATTTCTTTACTTATACACCACTGAAAACACTAATCATATTATAGACAGTTTGAGTGAGTTCTCCGAATATTCTCTTCAGTTGTGACCTGTTTCATATTCAATTCTGTCTAATTTTAGCTTCAAGATGTTAAAAGAGTAAAAGACCTTAGTTTGAGTGCATCTAGTATAGAGTATAACTATGCAATGTACTTTGATATTCTGCTTTTTTACTTTACCTTTTCAATGGTTTATTTCTTATTTCTTCTATTTTATAATGTAGGCTGCTGGTATTCCCAAAAAGCTTGCTCCAACTATTGGTATTTCTGTCGATCATCGCCGCAAGAACCGATCCTTGGAAGGTCTGCAAGCCAACGTGCAGAGGCTGAAGACATACAAGGCCAAGTTGGTCGTCTTCCCAAGACGTGCACGCAAGGTCAAGGTAATGCAAATTGCGGCTATATGCTTTTAATATATGACCTTTTTCTTAATTTTGGTACCGTCATTGCTGATAAATTTGAAAAAGAAAAAGTTGTGCATTATTCTTAATTTCTTCTGGCCCTGTTTTTTATTTCCAGGCTGGTGATTCCACTCCTGAGGAACTAGCAAATGCTACACAGGTTCAAGGTTCATACTTACCAATTGTGAGGGAGAAGCCATCTGTAGAGCTTGTTAAGATTACAAATGAAATGAAGGCATTTAAGGCTTATTACAAGCTTCGTCTTGAGCGAACAAACAAACGCCATTTGGGTGCCAGACTGAAGAGGGCTGCCGAGGCAGAGAAGGAAGACAAGAAGTGA

Protein sequence

>MS.gene050791.t1

MVKHNNVIPNEHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPIVHGQTQKYNMKLRAGKGFSLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVVFPRRARKVKAGDSTPEELANATQVQGSYLPIVREKPSVELVKITNEMKAFKAYYKLRLERTNKRHLGARLKRAAEAEKEDKK