AlfalfaGEDB | MS.gene55407

M. sativa cultivar XinJiangDaYe / MS.gene55407

KEGG: K15283
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016021 GO:0022857 GO:0031224 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF03151.19

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55407.t1	XP_003614055.2	98	245	5	0	1	245	161	405	7.50E-126	459.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55407.t1	P49131	81.6	245	45	0	1	245	163	407	9.9e-111	401.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55407.t1	G7JWT8	98.0	245	5	0	1	245	161	405	5.4e-126	459.9

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050338	MS.gene55407	0.822511	2.28E-53	-1.69E-46
MS.gene05104	MS.gene55407	0.808098	3.66E-50	-1.69E-46
MS.gene051651	MS.gene55407	0.805495	1.30E-49	-1.69E-46
MS.gene051863	MS.gene55407	0.812819	3.50E-51	-1.69E-46
MS.gene053479	MS.gene55407	-0.802066	6.69E-49	-1.69E-46
MS.gene054941	MS.gene55407	0.802015	6.86E-49	-1.69E-46
MS.gene056387	MS.gene55407	-0.804337	2.27E-49	-1.69E-46
MS.gene056688	MS.gene55407	0.800781	1.23E-48	-1.69E-46
MS.gene056697	MS.gene55407	0.820163	7.93E-53	-1.69E-46
MS.gene056856	MS.gene55407	0.815704	8.07E-52	-1.69E-46
MS.gene05926	MS.gene55407	0.824707	6.98E-54	-1.69E-46
MS.gene059699	MS.gene55407	0.824824	6.55E-54	-1.69E-46
MS.gene059703	MS.gene55407	0.814671	1.37E-51	-1.69E-46
MS.gene060405	MS.gene55407	0.832731	8.00E-56	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55407.t1	MTR_5g044220	97.959	245	5	0	1	245	161	405	7.40e-174	485
MS.gene55407.t1	MTR_4g088350	81.633	245	45	0	1	245	45	289	5.73e-148	415
MS.gene55407.t1	MTR_4g088350	81.633	245	45	0	1	245	156	400	1.70e-145	412
MS.gene55407.t1	MTR_3g049400	43.404	235	124	4	4	233	170	400	8.40e-56	184
MS.gene55407.t1	MTR_2g022700	42.083	240	130	3	1	235	161	396	4.13e-55	182
MS.gene55407.t1	MTR_2g029180	43.668	229	118	6	8	230	168	391	7.22e-51	171
MS.gene55407.t1	MTR_4g131800	40.078	257	130	4	1	233	158	414	1.22e-47	169
MS.gene55407.t1	MTR_4g105630	39.149	235	131	3	6	233	147	376	3.03e-45	155
MS.gene55407.t1	MTR_6g005480	39.167	240	137	5	1	233	170	407	4.68e-43	151
MS.gene55407.t1	MTR_3g077640	39.648	227	131	2	11	233	177	401	1.28e-42	149
MS.gene55407.t1	MTR_4g105630	38.767	227	123	6	6	223	147	366	2.50e-41	145
MS.gene55407.t1	MTR_4g105630	39.873	158	83	5	6	153	147	302	1.74e-27	108
MS.gene55407.t1	MTR_4g105630	43.165	139	71	4	6	138	147	283	1.50e-26	105
MS.gene55407.t1	MTR_3g072380	26.407	231	164	2	11	239	86	312	1.45e-18	84.0
MS.gene55407.t1	MTR_1g030320	26.407	231	164	2	11	239	85	311	1.50e-18	84.0
MS.gene55407.t1	MTR_4g018760	29.435	248	136	9	12	244	87	310	1.60e-12	66.2
MS.gene55407.t1	MTR_3g462070	29.289	239	144	9	14	242	86	309	4.53e-11	62.0
MS.gene55407.t1	MTR_3g072380	29.565	115	79	1	11	123	86	200	5.59e-11	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55407.t1	AT5G46110	81.818	242	44	0	1	242	52	293	9.79e-148	414
MS.gene55407.t1	AT5G46110	81.818	242	44	0	1	242	165	406	6.22e-146	414
MS.gene55407.t1	AT5G46110	82.158	241	43	0	1	241	165	405	6.82e-146	414
MS.gene55407.t1	AT5G46110	78.512	242	41	1	1	242	165	395	3.13e-136	389
MS.gene55407.t1	AT1G61800	43.404	235	124	3	4	233	157	387	5.73e-56	184
MS.gene55407.t1	AT1G61800	43.162	234	124	3	4	232	157	386	1.70e-55	183
MS.gene55407.t1	AT5G54800	44.783	230	118	4	9	233	162	387	2.54e-55	182
MS.gene55407.t1	AT5G17630	41.463	246	132	6	1	240	169	408	1.29e-54	181
MS.gene55407.t1	AT3G01550	43.363	226	124	2	12	233	147	372	9.59e-46	157
MS.gene55407.t1	AT3G01550	41.593	226	123	3	12	233	147	367	1.24e-39	141
MS.gene55407.t1	AT5G33320	36.752	234	142	2	11	240	175	406	3.07e-38	138
MS.gene55407.t1	AT4G03950	36.626	243	106	12	4	239	58	259	2.91e-28	108
MS.gene55407.t1	AT1G77610	26.407	231	164	2	11	239	80	306	6.61e-18	82.0
MS.gene55407.t1	AT1G21870	26.724	232	164	3	11	240	86	313	1.05e-16	78.6
MS.gene55407.t1	AT3G11320	28.390	236	147	8	14	242	87	307	2.05e-11	63.2

Find 44 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGCTTTAATCACTGAATAGA+TGG	0.281415	5.2:-34569141	None:intergenic
CTCTTGTTAGCCAATGAATA+AGG	0.285727	5.2:+34567017	None:intergenic
GGACCCCAGCTGATGGAGTT+TGG	0.328318	5.2:+34568502	MS.gene55407:CDS
GCCACAGAGACAGGGGAATA+TGG	0.335625	5.2:-34567726	None:intergenic
TCAGCTTCCCAGTTTGTCTT+AGG	0.336546	5.2:+34567700	MS.gene55407:CDS
GCAGCTTGCTACTAATACTT+TGG	0.357987	5.2:+34568731	MS.gene55407:intron
TTTCCAACTGCATGTGTTAG+TGG	0.372398	5.2:-34568765	None:intergenic
TATGGTGGCCTAAGACAAAC+TGG	0.380070	5.2:-34567708	None:intergenic
TAACTGAACTGTCTTTCAAT+TGG	0.389795	5.2:+34567963	MS.gene55407:CDS
TCAAAGATAGCCACAGAGAC+AGG	0.397800	5.2:-34567735	None:intergenic
TGTCATTGGATTCTCTATAG+TGG	0.400424	5.2:+34568806	MS.gene55407:CDS
GGTACTGCTATTGCAATTGC+AGG	0.404609	5.2:+34569113	MS.gene55407:CDS
GGATTCTCTATAGTGGTGTT+TGG	0.406870	5.2:+34568813	MS.gene55407:CDS
AACAAGAGCTCCTTATTCAT+TGG	0.407138	5.2:-34567027	None:intergenic
AATGAACTCACAAGAATTGC+CGG	0.411112	5.2:-34568224	None:intergenic
TTGGATGCTTCTTAGATTGA+AGG	0.415979	5.2:+34568481	MS.gene55407:intron
AACAAGATATCCACACAAAC+TGG	0.434241	5.2:+34569086	MS.gene55407:CDS
AAACTTTGTCAGTCCTACTT+TGG	0.455678	5.2:-34568542	None:intergenic
TAAATCCAAACTCCATCAGC+TGG	0.456322	5.2:-34568507	None:intergenic
AGAAATGCTATTGCCAAAGT+AGG	0.458021	5.2:+34568529	MS.gene55407:CDS
AGGGCATGACAAAATGCAAC+TGG	0.465026	5.2:-34567060	None:intergenic
TTCACTGTTAGGTGTATCAA+TGG	0.468136	5.2:+34567934	MS.gene55407:intron
AGGATACCTGATTGTAAAGA+TGG	0.470401	5.2:-34568597	None:intergenic
GGTGCTAAGCAACTTATGCT+TGG	0.490402	5.2:-34569482	None:intergenic
GAACTGTCTTTCAATTGGAC+TGG	0.491188	5.2:+34567968	MS.gene55407:CDS
ATGAACTCACAAGAATTGCC+GGG	0.526132	5.2:-34568223	None:intergenic
GATTGAAGGACCCCAGCTGA+TGG	0.553456	5.2:+34568495	MS.gene55407:intron
CAAAGATAGCCACAGAGACA+GGG	0.555765	5.2:-34567734	None:intergenic
ACCATATTCCCCTGTCTCTG+TGG	0.557367	5.2:+34567725	MS.gene55407:CDS
AAATCCAAACTCCATCAGCT+GGG	0.573043	5.2:-34568506	None:intergenic
ATATCCACACAAACTGGCAT+TGG	0.586556	5.2:+34569092	MS.gene55407:CDS
TCTATATTCTAAGAAAGCAA+TGG	0.613760	5.2:+34568036	MS.gene55407:CDS
AGTACCAATGCCAGTTTGTG+TGG	0.619792	5.2:-34569096	None:intergenic
AACAGCAGCAAATGATACAT+TGG	0.623207	5.2:-34567097	None:intergenic
AAAGATAGCCACAGAGACAG+GGG	0.624479	5.2:-34567733	None:intergenic
GCGCCACTAACACATGCAGT+TGG	0.626603	5.2:+34568762	MS.gene55407:CDS
TGAACTCACAAGAATTGCCG+GGG	0.635557	5.2:-34568222	None:intergenic
CATTGGACATGACATGACCA+AGG	0.673962	5.2:-34567080	None:intergenic
ATTGGACATGACATGACCAA+GGG	0.677416	5.2:-34567079	None:intergenic
AATCCAAACTCCATCAGCTG+GGG	0.679194	5.2:-34568505	None:intergenic
ACAGAGACAGGGGAATATGG+TGG	0.688163	5.2:-34567723	None:intergenic
GAACTCACAAGAATTGCCGG+GGG	0.692863	5.2:-34568221	None:intergenic
ATGGTGGCCTAAGACAAACT+GGG	0.748077	5.2:-34567707	None:intergenic
AACTCACAAGAATTGCCGGG+GGG	0.771896	5.2:-34568220	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATAGATTAAAACTATATAT+CGG	+	chr5.2:34567311-34567330	MS.gene55407:intron	10.0%
!!	AAAATCAATAGTAAAATTAC+AGG	-	chr5.2:34568436-34568455	None:intergenic	15.0%
!!	ATAAATAAAGAAAAGATTGT+AGG	-	chr5.2:34569207-34569226	None:intergenic	15.0%
!!	TTTATCAAATTCTTATAACA+TGG	+	chr5.2:34567873-34567892	MS.gene55407:intron	15.0%
!!!	AAATTGAACAAATTTTTTGT+AGG	+	chr5.2:34568361-34568380	MS.gene55407:intron	15.0%
!!!	AATTGAACAAATTTTTTGTA+GGG	+	chr5.2:34568362-34568381	MS.gene55407:intron	15.0%
!!!	CCAAAATTTTAGAATATAAT+CGG	-	chr5.2:34569052-34569071	None:intergenic	15.0%
!!	AAGTTAGAAAAAGAATATGA+TGG	-	chr5.2:34568875-34568894	None:intergenic	20.0%
!!	TTTCTAAATATTGCTGATAA+AGG	-	chr5.2:34569325-34569344	None:intergenic	20.0%
!!!	AAAATTTTGGTAACATTTGT+AGG	+	chr5.2:34569062-34569081	MS.gene55407:intron	20.0%
!!!	CCGATTATATTCTAAAATTT+TGG	+	chr5.2:34569049-34569068	MS.gene55407:intron	20.0%
!!!	GAAATGTTTAATACCTTTTA+TGG	-	chr5.2:34567142-34567161	None:intergenic	20.0%
!!!	TATTTCAAAATTTTACAGAC+TGG	+	chr5.2:34568140-34568159	MS.gene55407:intron	20.0%
!!!	TTTTATAGGTACTAAATGTA+GGG	-	chr5.2:34568326-34568345	None:intergenic	20.0%
!	AAAAACTTACCTAAAACAAC+AGG	-	chr5.2:34567763-34567782	None:intergenic	25.0%
!	ACCTAAAGAACAAATAGAAT+AGG	-	chr5.2:34568920-34568939	None:intergenic	25.0%
!	ATTAAAACTATATATCGGTC+CGG	+	chr5.2:34567316-34567335	MS.gene55407:intron	25.0%
!	GAATAACATGAACAAAATGA+AGG	-	chr5.2:34569407-34569426	None:intergenic	25.0%
!	TCCTATTCTATTTGTTCTTT+AGG	+	chr5.2:34568916-34568935	MS.gene55407:intron	25.0%
!	TGAAAATGGTAATAAAGGAA+GGG	-	chr5.2:34567425-34567444	None:intergenic	25.0%
!!	AATTAACCTTTCAGTAGTTT+TGG	-	chr5.2:34568255-34568274	None:intergenic	25.0%
!!	ACTACTGAAAGGTTAATTTT+AGG	+	chr5.2:34568257-34568276	MS.gene55407:intron	25.0%
!!	ATCCAAAAAACTTTGAGAAA+AGG	-	chr5.2:34568085-34568104	None:intergenic	25.0%
!!	CTACTGAAAGGTTAATTTTA+GGG	+	chr5.2:34568258-34568277	MS.gene55407:intron	25.0%
!!	CTTTTATAGGTACTAAATGT+AGG	-	chr5.2:34568327-34568346	None:intergenic	25.0%
!!	TACCTTTTCTCAAAGTTTTT+TGG	+	chr5.2:34568080-34568099	MS.gene55407:intron	25.0%
!!	TCTATATTCTAAGAAAGCAA+TGG	+	chr5.2:34568036-34568055	MS.gene55407:CDS	25.0%
!!	TCTTTTACACATACCATAAA+AGG	+	chr5.2:34567126-34567145	MS.gene55407:CDS	25.0%
!!!	TTTCTCAAAGTTTTTTGGAT+TGG	+	chr5.2:34568085-34568104	MS.gene55407:intron	25.0%
	AGTACCTATAAAAGCAAAAC+AGG	+	chr5.2:34568333-34568352	MS.gene55407:intron	30.0%
	AGTGTTAACAACAAGAACAT+AGG	-	chr5.2:34567187-34567206	None:intergenic	30.0%
	ATCAAGATAACAAGAGACAT+AGG	-	chr5.2:34569234-34569253	None:intergenic	30.0%
	CATATCTTAGACAGTGAAAA+TGG	-	chr5.2:34567439-34567458	None:intergenic	30.0%
	CTAATATGAGTTTCACTGTT+AGG	+	chr5.2:34567923-34567942	MS.gene55407:intron	30.0%
	GAAAATGGTAATAAAGGAAG+GGG	-	chr5.2:34567424-34567443	None:intergenic	30.0%
	GACAGTGAAAATGGTAATAA+AGG	-	chr5.2:34567430-34567449	None:intergenic	30.0%
	GGCAATAATATGATTGTGAT+TGG	-	chr5.2:34567403-34567422	None:intergenic	30.0%
	GTACCTATAAAAGCAAAACA+GGG	+	chr5.2:34568334-34568353	MS.gene55407:intron	30.0%
	GTGAAAATGGTAATAAAGGA+AGG	-	chr5.2:34567426-34567445	None:intergenic	30.0%
	TAACTGAACTGTCTTTCAAT+TGG	+	chr5.2:34567963-34567982	MS.gene55407:CDS	30.0%
	TACCATAAACTAAAATCCAC+AGG	-	chr5.2:34569435-34569454	None:intergenic	30.0%
	TCAACCAGAAAGAAATAAGA+AGG	-	chr5.2:34567789-34567808	None:intergenic	30.0%
	TGAAAATCGTGAATTATGCA+AGG	+	chr5.2:34568393-34568412	MS.gene55407:intron	30.0%
	TGCTTTAATCACTGAATAGA+TGG	-	chr5.2:34569144-34569163	None:intergenic	30.0%
	TTACTACCAAAACTACTGAA+AGG	+	chr5.2:34568246-34568265	MS.gene55407:intron	30.0%
	TTTGAGAAAAGGTAACAATG+TGG	-	chr5.2:34568074-34568093	None:intergenic	30.0%
!	AAAGCGCTCATTTGTTAATA+AGG	-	chr5.2:34568299-34568318	None:intergenic	30.0%
!	CAAAATTTTACAGACTGGAA+TGG	+	chr5.2:34568145-34568164	MS.gene55407:intron	30.0%
!	GAGACTTTTCTAAATTGGTT+AGG	+	chr5.2:34567288-34567307	MS.gene55407:intron	30.0%
!	GTTTTACCATCTTTACAATC+AGG	+	chr5.2:34568591-34568610	MS.gene55407:CDS	30.0%
!	TGTTCCTTCTTATTTCTTTC+TGG	+	chr5.2:34567782-34567801	MS.gene55407:intron	30.0%
!	TTGAAGAGAGTTTTTGTCAT+TGG	+	chr5.2:34568792-34568811	MS.gene55407:CDS	30.0%
!	TTTTCTCAAATACTCATGTG+TGG	-	chr5.2:34567505-34567524	None:intergenic	30.0%
!!	TAATTTGAGTTGTGTGAAGA+TGG	-	chr5.2:34568122-34568141	None:intergenic	30.0%
!!!	TACCTGTGGATTTTAGTTTA+TGG	+	chr5.2:34569430-34569449	MS.gene55407:intron	30.0%
	AAACATCGAAGAGCAAAAAC+GGG	+	chr5.2:34569163-34569182	MS.gene55407:CDS	35.0%
	AAACTAAAATCCACAGGTAG+TGG	-	chr5.2:34569429-34569448	None:intergenic	35.0%
	AAACTTTGTCAGTCCTACTT+TGG	-	chr5.2:34568545-34568564	None:intergenic	35.0%
	AACAAGATATCCACACAAAC+TGG	+	chr5.2:34569086-34569105	MS.gene55407:CDS	35.0%
	AACAGCAGCAAATGATACAT+TGG	-	chr5.2:34567100-34567119	None:intergenic	35.0%
	AATGAACTCACAAGAATTGC+CGG	-	chr5.2:34568227-34568246	None:intergenic	35.0%
	AGAAATGCTATTGCCAAAGT+AGG	+	chr5.2:34568529-34568548	MS.gene55407:CDS	35.0%
	AGGATACCTGATTGTAAAGA+TGG	-	chr5.2:34568600-34568619	None:intergenic	35.0%
	CAAACATCGAAGAGCAAAAA+CGG	+	chr5.2:34569162-34569181	MS.gene55407:CDS	35.0%
	CAACACTTGACTAAAACACA+AGG	-	chr5.2:34568620-34568639	None:intergenic	35.0%
	GCACTTGAATTTCCAATAAC+TGG	-	chr5.2:34567265-34567284	None:intergenic	35.0%
	TCTTGGGATAAACCAGTTAT+TGG	+	chr5.2:34567250-34567269	MS.gene55407:intron	35.0%
	TGTCATTGGATTCTCTATAG+TGG	+	chr5.2:34568806-34568825	MS.gene55407:CDS	35.0%
	TTCACTGTTAGGTGTATCAA+TGG	+	chr5.2:34567934-34567953	MS.gene55407:intron	35.0%
	TTGGATGCTTCTTAGATTGA+AGG	+	chr5.2:34568481-34568500	MS.gene55407:intron	35.0%
!	AGTTTCTGTCTGATCTTTTC+TGG	+	chr5.2:34568560-34568579	MS.gene55407:CDS	35.0%
!	ATTTTCTCTCTTTGTAGCTC+TGG	+	chr5.2:34567660-34567679	MS.gene55407:intron	35.0%
!	GCGATGAGACTTTTCTAAAT+TGG	+	chr5.2:34567283-34567302	MS.gene55407:intron	35.0%
!!	AGTCCCTGTTTTGCTTTTAT+AGG	-	chr5.2:34568340-34568359	None:intergenic	35.0%
!!	CTTGTTGTTAACACTGAAGT+TGG	+	chr5.2:34567192-34567211	MS.gene55407:intron	35.0%
!!	GAAGCTGAAGCATTGAAAAA+TGG	-	chr5.2:34567688-34567707	None:intergenic	35.0%
!!	GTTTGTGACTGATTTCGTTT+TGG	+	chr5.2:34568462-34568481	MS.gene55407:intron	35.0%
!!!	TCTTTGACTCCTGTTGTTTT+AGG	+	chr5.2:34567751-34567770	MS.gene55407:CDS	35.0%
	AAATCCAAACTCCATCAGCT+GGG	-	chr5.2:34568509-34568528	None:intergenic	40.0%
	ACTCATGTGTGGAACTTCTT+TGG	-	chr5.2:34567494-34567513	None:intergenic	40.0%
	ATATCCACACAAACTGGCAT+TGG	+	chr5.2:34569092-34569111	MS.gene55407:CDS	40.0%
	ATGAACTCACAAGAATTGCC+GGG	-	chr5.2:34568226-34568245	None:intergenic	40.0%
	ATTGGACATGACATGACCAA+GGG	-	chr5.2:34567082-34567101	None:intergenic	40.0%
	GAACTGTCTTTCAATTGGAC+TGG	+	chr5.2:34567968-34567987	MS.gene55407:CDS	40.0%
	GGATTCTCTATAGTGGTGTT+TGG	+	chr5.2:34568813-34568832	MS.gene55407:CDS	40.0%
	TAAATCCAAACTCCATCAGC+TGG	-	chr5.2:34568510-34568529	None:intergenic	40.0%
	TCATGTTATTCCACTACCTG+TGG	+	chr5.2:34569416-34569435	MS.gene55407:intron	40.0%
	TTTCCAACTGCATGTGTTAG+TGG	-	chr5.2:34568768-34568787	None:intergenic	40.0%
!	CTGTCTGATCTTTTCTGGAT+TGG	+	chr5.2:34568565-34568584	MS.gene55407:CDS	40.0%
!	GTGAACATCTTTTGTCTGTC+TGG	+	chr5.2:34567214-34567233	MS.gene55407:intron	40.0%
!!	GCAGCTTGCTACTAATACTT+TGG	+	chr5.2:34568731-34568750	MS.gene55407:intron	40.0%
	AAAGATAGCCACAGAGACAG+GGG	-	chr5.2:34567736-34567755	None:intergenic	45.0%
	AATCCAAACTCCATCAGCTG+GGG	-	chr5.2:34568508-34568527	None:intergenic	45.0%
	AGGGCATGACAAAATGCAAC+TGG	-	chr5.2:34567063-34567082	None:intergenic	45.0%
	AGTACCAATGCCAGTTTGTG+TGG	-	chr5.2:34569099-34569118	None:intergenic	45.0%
	ATCGGTCCGGTTGAAATAGA+AGG	+	chr5.2:34567329-34567348	MS.gene55407:intron	45.0%
	ATGGTGGCCTAAGACAAACT+GGG	-	chr5.2:34567710-34567729	None:intergenic	45.0%
	CAAAGATAGCCACAGAGACA+GGG	-	chr5.2:34567737-34567756	None:intergenic	45.0%
	CATTGGACATGACATGACCA+AGG	-	chr5.2:34567083-34567102	None:intergenic	45.0%
	CTGCAGCCCTTACATCTTAA+CGG	+	chr5.2:34569290-34569309	MS.gene55407:intron	45.0%
	GAGCGTCCGTTAAGATGTAA+GGG	-	chr5.2:34569299-34569318	None:intergenic	45.0%
	GGTACTGCTATTGCAATTGC+AGG	+	chr5.2:34569113-34569132	MS.gene55407:CDS	45.0%
	TATGGTGGCCTAAGACAAAC+TGG	-	chr5.2:34567711-34567730	None:intergenic	45.0%
	TCAAAGATAGCCACAGAGAC+AGG	-	chr5.2:34567738-34567757	None:intergenic	45.0%
	TCAGCTTCCCAGTTTGTCTT+AGG	+	chr5.2:34567700-34567719	MS.gene55407:CDS	45.0%
	TCCGGTTGAAATAGAAGGGA+CGG	+	chr5.2:34567334-34567353	MS.gene55407:intron	45.0%
	TCCGTCCCTTCTATTTCAAC+CGG	-	chr5.2:34567338-34567357	None:intergenic	45.0%
	TCGGTCCGGTTGAAATAGAA+GGG	+	chr5.2:34567330-34567349	MS.gene55407:intron	45.0%
	TGAACTCACAAGAATTGCCG+GGG	-	chr5.2:34568225-34568244	None:intergenic	45.0%
!	AGAGCGTCCGTTAAGATGTA+AGG	-	chr5.2:34569300-34569319	None:intergenic	45.0%
!	AGCAGGGTTTAGAGTGAATG+AGG	+	chr5.2:34567361-34567380	MS.gene55407:intron	45.0%
!	ATAGAAGGGACGGATTTAGC+AGG	+	chr5.2:34567344-34567363	MS.gene55407:intron	45.0%
!	GTTGCATTTTGTCATGCCCT+TGG	+	chr5.2:34567063-34567082	MS.gene55407:CDS	45.0%
!	TAGAAGGGACGGATTTAGCA+GGG	+	chr5.2:34567345-34567364	MS.gene55407:intron	45.0%
	AACTCACAAGAATTGCCGGG+GGG	-	chr5.2:34568223-34568242	None:intergenic	50.0%
	AATTGCCGGGGGGATACAAA+AGG	-	chr5.2:34568213-34568232	None:intergenic	50.0%
	ACAGAGACAGGGGAATATGG+TGG	-	chr5.2:34567726-34567745	None:intergenic	50.0%
	ACCATATTCCCCTGTCTCTG+TGG	+	chr5.2:34567725-34567744	MS.gene55407:CDS	50.0%
	GAACTCACAAGAATTGCCGG+GGG	-	chr5.2:34568224-34568243	None:intergenic	50.0%
	GTCTGTCTGGTTGCATTCCT+CGG	+	chr5.2:34567227-34567246	MS.gene55407:intron	50.0%
	TGGTTGCATTCCTCGGTCTT+GGG	+	chr5.2:34567234-34567253	MS.gene55407:intron	50.0%
!	ACTGGTTTATCCCAAGACCG+AGG	-	chr5.2:34567247-34567266	None:intergenic	50.0%
!	GCTGCAGCAGCTTTCTGAAA+TGG	-	chr5.2:34569277-34569296	None:intergenic	50.0%
	CTGGTTGCATTCCTCGGTCT+TGG	+	chr5.2:34567233-34567252	MS.gene55407:intron	55.0%
	GATTGAAGGACCCCAGCTGA+TGG	+	chr5.2:34568495-34568514	MS.gene55407:intron	55.0%
	GCCACAGAGACAGGGGAATA+TGG	-	chr5.2:34567729-34567748	None:intergenic	55.0%
	GCGCCACTAACACATGCAGT+TGG	+	chr5.2:34568762-34568781	MS.gene55407:CDS	55.0%
!	ACTCGCCTTTTGTATCCCCC+CGG	+	chr5.2:34568205-34568224	MS.gene55407:CDS	55.0%
	GGACCCCAGCTGATGGAGTT+TGG	+	chr5.2:34568502-34568521	MS.gene55407:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	34567030	34569491	34567030	ID=MS.gene55407
chr5.2	mRNA	34567030	34569491	34567030	ID=MS.gene55407.t1;Parent=MS.gene55407
chr5.2	exon	34567030	34567147	34567030	ID=MS.gene55407.t1.exon1;Parent=MS.gene55407.t1
chr5.2	CDS	34567030	34567147	34567030	ID=cds.MS.gene55407.t1;Parent=MS.gene55407.t1
chr5.2	exon	34567677	34567772	34567677	ID=MS.gene55407.t1.exon2;Parent=MS.gene55407.t1
chr5.2	CDS	34567677	34567772	34567677	ID=cds.MS.gene55407.t1;Parent=MS.gene55407.t1
chr5.2	exon	34567945	34568057	34567945	ID=MS.gene55407.t1.exon3;Parent=MS.gene55407.t1
chr5.2	CDS	34567945	34568057	34567945	ID=cds.MS.gene55407.t1;Parent=MS.gene55407.t1
chr5.2	exon	34568158	34568235	34568158	ID=MS.gene55407.t1.exon4;Parent=MS.gene55407.t1
chr5.2	CDS	34568158	34568235	34568158	ID=cds.MS.gene55407.t1;Parent=MS.gene55407.t1
chr5.2	exon	34568496	34568612	34568496	ID=MS.gene55407.t1.exon5;Parent=MS.gene55407.t1
chr5.2	CDS	34568496	34568612	34568496	ID=cds.MS.gene55407.t1;Parent=MS.gene55407.t1
chr5.2	exon	34568735	34568834	34568735	ID=MS.gene55407.t1.exon6;Parent=MS.gene55407.t1
chr5.2	CDS	34568735	34568834	34568735	ID=cds.MS.gene55407.t1;Parent=MS.gene55407.t1
chr5.2	exon	34569084	34569184	34569084	ID=MS.gene55407.t1.exon7;Parent=MS.gene55407.t1
chr5.2	CDS	34569084	34569184	34569084	ID=cds.MS.gene55407.t1;Parent=MS.gene55407.t1
chr5.2	exon	34569462	34569491	34569462	ID=MS.gene55407.t1.exon8;Parent=MS.gene55407.t1
chr5.2	CDS	34569462	34569491	34569462	ID=cds.MS.gene55407.t1;Parent=MS.gene55407.t1

Gene Sequence

>MS.gene55407

ATGAATAAGGAGCTCTTGTTACTATTGACTCCAGTTGCATTTTGTCATGCCCTTGGTCATGTCATGTCCAATGTATCATTTGCTGCTGTTGCTGTATCTTTTACACATACCATAAAAGGTATTAAACATTTCTTACACTGTTTTTATTTACACACCTATGTTCTTGTTGTTAACACTGAAGTTGGTGAACATCTTTTGTCTGTCTGGTTGCATTCCTCGGTCTTGGGATAAACCAGTTATTGGAAATTCAAGTGCGATGAGACTTTTCTAAATTGGTTAGGAATAGATTAAAACTATATATCGGTCCGGTTGAAATAGAAGGGACGGATTTAGCAGGGTTTAGAGTGAATGAGGTGAAAAATAGACTTATCCAATCACAATCATATTATTGCCCCTTCCTTTATTACCATTTTCACTGTCTAAGATATGAGTGTCTGACAAATTCTAATTTAGATTATTTACCAAAGAAGTTCCACACATGAGTATTTGAGAAAACATACTAATCATGAAATTCTCATTAACTTGAGTATTCAATATATGATTTTTATCACTCTTCTTATTAATAAACTTATGTCGAAGTATTCATATTCGTTGATCAATACAATTTAAGCAATAATAATCTGTTGTCTTATTTTCTCTCTTTGTAGCTCTGGAGCCATTTTTCAATGCTTCAGCTTCCCAGTTTGTCTTAGGCCACCATATTCCCCTGTCTCTGTGGCTATCTTTGACTCCTGTTGTTTTAGGTAAGTTTTTGTTCCTTCTTATTTCTTTCTGGTTGATTCAAAGAAGAGCTTTCTTATCTTATCTTAAAAATATTGTATATGTTTATATATTTATTATTCATTTATCAAATTCTTATAACATGGTACTTCAATTTGATAATTATTTAATTACTAATATGAGTTTCACTGTTAGGTGTATCAATGGCATCACTAACTGAACTGTCTTTCAATTGGACTGGTTTCATTAGTGCAATGATTTCAAATATAGCATTTACATACAGAAGTCTATATTCTAAGAAAGCAATGGTAATATATTTTGCCACATTGTTACCTTTTCTCAAAGTTTTTTGGATTGGAATGTTATATACCATCTTCACACAACTCAAATTATTTCAAAATTTTACAGACTGGAATGGACAGTACAAATGTATATGCGTATATTTCAGTAATTGCACTCGCCTTTTGTATCCCCCCGGCAATTCTTGTGAGTTCATTTACTACCAAAACTACTGAAAGGTTAATTTTAGGGTTAAATGTTTTTAGTCCTTATTAACAAATGAGCGCTTTAAGTCCCTACATTTAGTACCTATAAAAGCAAAACAGGGACTAAAATTGAACAAATTTTTTGTAGGGACTAAACTTGAAAATCGTGAATTATGCAAGGACTACAAACATATTTAGCCTGTAATTTTACTATTGATTTTTCGTCTGTTTGTGACTGATTTCGTTTTGGATGCTTCTTAGATTGAAGGACCCCAGCTGATGGAGTTTGGATTTAGAAATGCTATTGCCAAAGTAGGACTGACAAAGTTTCTGTCTGATCTTTTCTGGATTGGAATGTTTTACCATCTTTACAATCAGGTATCCTTGTGTTTTAGTCAAGTGTTGAAGAGTTTATTATGTTTGATGCTTTTCTTCTTTGCAGACTCAAATTGATGTACAAATAATGAAAACTTAACAACTTTTTGATGTTATAATTGCAGCTTGCTACTAATACTTTGGAACGTGTTGCGCCACTAACACATGCAGTTGGAAATGTGTTGAAGAGAGTTTTTGTCATTGGATTCTCTATAGTGGTGTTTGGTAATTCATTTGATTTTCTTATCAATTGAAATACAATCCATCATATTCTTTTTCTAACTTTGATTTTGTTATACTATACTCTCCTATTCTATTTGTTCTTTAGGTGTTTGATCAGTGTTTAAGAGTTTTAAATTGTAATATCAAGAAAGAGAGTTCAAGTCAGCTCGAAAACGATATAAAATTGTCATTAGTGTCACTTTAATAAATAATAACTCCGATTATATTCTAAAATTTTGGTAACATTTGTAGGCAACAAGATATCCACACAAACTGGCATTGGTACTGCTATTGCAATTGCAGGTGTTGCCATCTATTCAGTGATTAAAGCAAACATCGAAGAGCAAAAACGGGTAAACTTTGATACAAAATCCTACAATCTTTTCTTTATTTATCTCTCCTATGTCTCTTGTTATCTTGATGCAATGCTAATATCTTTATTCCATTTCAGAAAGCTGCTGCAGCCCTTACATCTTAACGGACGCTCTTTCCTTTATCAGCAATATTTAGAAACATTTTTCATTGTTTGTTACATGAATAGTGAAAGCTTCTAGAAGTAGAAAAATTGTTTTCCTTCATTTTGTTCATGTTATTCCACTACCTGTGGATTTTAGTTTATGGTATCTGCAGAATTTCAGTGCAGAGTTTAACCAAGCATAA

Protein sequence

>MS.gene55407.t1

MNKELLLLLTPVAFCHALGHVMSNVSFAAVAVSFTHTIKALEPFFNASASQFVLGHHIPLSLWLSLTPVVLGVSMASLTELSFNWTGFISAMISNIAFTYRSLYSKKAMTGMDSTNVYAYISVIALAFCIPPAILIEGPQLMEFGFRNAIAKVGLTKFLSDLFWIGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIVVFGNKISTQTGIGTAIAIAGVAIYSVIKANIEEQKRNFSAEFNQA