AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55843

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55843.t1 MTR_8g100075 99.046 629 6 0 1 629 1 629 0.0 1305
MS.gene55843.t1 MTR_0019s0120 56.390 626 262 5 9 628 14 634 0.0 773
MS.gene55843.t1 MTR_7g076170 60.032 618 224 6 20 622 18 627 0.0 771
MS.gene55843.t1 MTR_8g432680 57.800 609 249 5 22 622 24 632 0.0 751
MS.gene55843.t1 MTR_1g101370 57.167 600 243 6 28 621 27 618 0.0 746
MS.gene55843.t1 MTR_4g098890 56.551 603 232 7 25 617 18 600 0.0 729
MS.gene55843.t1 MTR_8g055840 54.023 609 258 5 25 628 17 608 0.0 710
MS.gene55843.t1 MTR_5g040360 52.979 621 263 7 17 629 9 608 0.0 693
MS.gene55843.t1 MTR_3g040370 52.451 612 258 6 25 628 19 605 0.0 666
MS.gene55843.t1 MTR_0019s0120 56.084 526 220 5 9 528 14 534 0.0 644
MS.gene55843.t1 MTR_7g006060 49.815 540 265 3 81 614 26 565 0.0 601
MS.gene55843.t1 MTR_8g071280 44.677 573 303 10 61 627 31 595 1.93e-175 511
MS.gene55843.t1 MTR_5g026930 46.768 526 270 7 98 620 72 590 5.50e-173 505
MS.gene55843.t1 MTR_7g076150 43.805 573 282 10 63 620 40 587 3.36e-172 503
MS.gene55843.t1 MTR_8g432620 42.328 567 297 8 63 621 57 601 8.12e-170 497
MS.gene55843.t1 MTR_1g442840 45.825 515 249 11 96 596 90 588 1.99e-155 461
MS.gene55843.t1 MTR_5g080720 42.222 540 271 11 95 617 122 637 3.09e-154 459
MS.gene55843.t1 MTR_1g442840 46.516 488 235 10 119 596 4 475 1.63e-151 447
MS.gene55843.t1 MTR_1g069785 41.681 571 293 14 73 620 32 585 1.09e-149 446
MS.gene55843.t1 MTR_1g075900 42.572 552 280 14 96 627 89 623 2.40e-147 441
MS.gene55843.t1 MTR_3g068990 41.744 539 289 10 88 617 143 665 4.61e-147 441
MS.gene55843.t1 MTR_7g076150 45.923 466 218 8 167 620 1 444 8.29e-147 432
MS.gene55843.t1 MTR_1g029730 40.602 532 283 11 97 619 151 658 1.33e-142 429
MS.gene55843.t1 MTR_5g026930 46.774 434 222 6 98 528 72 499 1.54e-141 421
MS.gene55843.t1 MTR_3g096480 40.489 573 302 16 63 620 228 776 8.80e-138 421
MS.gene55843.t1 MTR_5g080720 42.500 480 235 11 95 557 122 577 2.32e-134 405
MS.gene55843.t1 MTR_3g088790 41.045 536 281 15 101 620 226 742 2.52e-133 409
MS.gene55843.t1 MTR_8g093880 40.182 550 294 16 63 596 256 786 1.45e-132 409
MS.gene55843.t1 MTR_5g083150 39.810 525 278 15 107 620 101 598 5.36e-130 395
MS.gene55843.t1 MTR_1g051055 36.305 617 342 12 25 621 19 604 5.82e-130 395
MS.gene55843.t1 MTR_5g021100 38.951 534 290 14 101 620 322 833 3.67e-129 400
MS.gene55843.t1 MTR_3g071530 38.388 521 287 8 107 620 153 646 2.36e-128 392
MS.gene55843.t1 MTR_8g076650 38.752 529 297 11 101 620 380 890 2.39e-124 389
MS.gene55843.t1 MTR_1g022255 34.981 526 293 15 108 620 210 699 2.26e-97 313
MS.gene55843.t1 MTR_4g083030 32.613 555 328 15 87 619 73 603 6.11e-96 307
MS.gene55843.t1 MTR_3g074780 32.155 566 316 16 95 620 151 688 2.02e-94 305
MS.gene55843.t1 MTR_5g064080 31.429 560 324 16 96 624 144 674 6.15e-92 298
MS.gene55843.t1 MTR_1g022255 29.517 393 234 12 108 488 210 571 2.45e-50 184
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55843.t1 AT1G33170 71.520 625 160 4 16 622 12 636 0.0 959
MS.gene55843.t1 AT4G10440 70.906 629 173 5 1 626 1 622 0.0 939
MS.gene55843.t1 AT2G45750 58.576 618 241 6 17 626 11 621 0.0 761
MS.gene55843.t1 AT4G00750 55.217 623 265 5 15 629 15 631 0.0 738
MS.gene55843.t1 AT1G26850 55.354 607 246 5 25 621 18 609 0.0 712
MS.gene55843.t1 AT1G26850 55.354 607 246 5 25 621 18 609 0.0 712
MS.gene55843.t1 AT4G18030 52.674 617 272 8 12 623 5 606 0.0 677
MS.gene55843.t1 AT2G43200 50.860 523 251 4 98 618 91 609 0.0 595
MS.gene55843.t1 AT2G43200 50.860 523 251 4 98 618 91 609 0.0 595
MS.gene55843.t1 AT1G26850 54.600 500 202 5 25 514 18 502 0.0 565
MS.gene55843.t1 AT1G31850 47.917 528 263 8 98 620 76 596 0.0 539
MS.gene55843.t1 AT1G31850 47.917 528 263 8 98 620 76 596 0.0 539
MS.gene55843.t1 AT1G31850 47.917 528 263 8 98 620 76 596 0.0 539
MS.gene55843.t1 AT1G31850 47.917 528 263 8 98 620 76 596 0.0 539
MS.gene55843.t1 AT4G19120 46.715 548 274 9 82 620 52 590 0.0 530
MS.gene55843.t1 AT4G19120 46.715 548 274 9 82 620 52 590 0.0 530
MS.gene55843.t1 AT4G00740 43.182 528 274 7 101 620 84 593 1.18e-158 469
MS.gene55843.t1 AT4G00740 43.182 528 274 7 101 620 84 593 1.18e-158 469
MS.gene55843.t1 AT5G06050 40.422 569 295 12 71 619 119 663 2.57e-154 460
MS.gene55843.t1 AT4G19120 46.930 456 225 8 82 528 52 499 1.70e-150 444
MS.gene55843.t1 AT2G39750 39.831 590 306 13 52 617 125 689 1.64e-149 448
MS.gene55843.t1 AT1G77260 41.917 532 282 10 95 617 140 653 1.27e-147 442
MS.gene55843.t1 AT1G04430 42.336 548 277 12 96 620 82 613 3.91e-146 437
MS.gene55843.t1 AT1G04430 42.336 548 277 12 96 620 82 613 3.91e-146 437
MS.gene55843.t1 AT1G04430 42.336 548 277 12 96 620 82 613 3.91e-146 437
MS.gene55843.t1 AT4G14360 43.883 515 259 12 96 596 74 572 1.02e-145 436
MS.gene55843.t1 AT4G14360 43.883 515 259 12 96 596 74 572 1.02e-145 436
MS.gene55843.t1 AT3G23300 42.144 541 281 13 96 620 77 601 4.95e-144 431
MS.gene55843.t1 AT3G23300 42.144 541 281 13 96 620 77 601 4.95e-144 431
MS.gene55843.t1 AT5G14430 42.647 544 278 14 96 621 78 605 1.94e-139 420
MS.gene55843.t1 AT5G14430 42.279 544 280 14 96 621 78 605 1.84e-138 417
MS.gene55843.t1 AT2G34300 40.208 577 307 16 58 620 205 757 3.86e-136 416
MS.gene55843.t1 AT2G34300 40.208 577 307 16 58 620 205 757 3.86e-136 416
MS.gene55843.t1 AT2G34300 40.208 577 307 16 58 620 205 757 3.86e-136 416
MS.gene55843.t1 AT1G29470 42.135 534 276 15 101 620 243 757 2.16e-135 414
MS.gene55843.t1 AT1G29470 42.135 534 276 15 101 620 243 757 2.16e-135 414
MS.gene55843.t1 AT2G40280 40.571 525 268 13 107 620 90 581 1.03e-133 404
MS.gene55843.t1 AT5G64030 39.062 576 308 16 63 620 266 816 9.42e-132 407
MS.gene55843.t1 AT3G51070 40.706 538 279 16 101 620 374 889 4.43e-130 404
MS.gene55843.t1 AT3G56080 39.734 526 274 15 107 620 114 608 3.87e-129 393
MS.gene55843.t1 AT3G10200 37.313 536 300 9 101 621 75 589 9.10e-129 392
MS.gene55843.t1 AT5G04060 36.517 534 305 8 101 621 86 598 7.21e-127 387
MS.gene55843.t1 AT3G10200 39.175 485 260 8 101 571 75 538 1.04e-122 376
MS.gene55843.t1 AT3G51070 42.766 470 237 14 101 554 374 827 3.32e-116 366
MS.gene55843.t1 AT3G56080 41.087 460 236 14 107 554 114 550 1.20e-114 354
MS.gene55843.t1 AT1G19430 35.038 528 291 17 108 620 232 722 2.81e-95 308
MS.gene55843.t1 AT1G19430 35.038 528 291 17 108 620 232 722 2.81e-95 308
MS.gene55843.t1 AT1G13860 32.613 555 308 15 95 617 78 598 1.81e-93 300
MS.gene55843.t1 AT1G13860 32.613 555 308 15 95 617 78 598 1.81e-93 300
MS.gene55843.t1 AT1G13860 32.613 555 308 15 95 617 78 598 1.81e-93 300
MS.gene55843.t1 AT1G13860 32.613 555 308 15 95 617 78 598 1.81e-93 300
MS.gene55843.t1 AT2G03480 31.119 572 319 14 77 619 67 592 2.38e-90 292
MS.gene55843.t1 AT2G03480 31.607 560 343 13 77 619 67 603 7.74e-89 288
MS.gene55843.t1 AT1G78240 31.004 558 328 17 96 619 144 678 2.16e-87 286
MS.gene55843.t1 AT1G78240 31.004 558 328 17 96 619 144 678 2.16e-87 286
MS.gene55843.t1 AT1G13860 33.693 463 255 13 184 617 3 442 9.83e-82 265
MS.gene55843.t1 AT1G19430 31.313 396 226 14 108 489 232 595 1.15e-53 194
MS.gene55843.t1 AT2G03480 30.792 341 217 6 77 408 67 397 9.46e-52 184

Find 140 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGTTATTGGATTCTTTC+TGG 0.100373 4.3:-4043521 MS.gene55843:CDS
TTAAAAGGTGTCTTATATTT+TGG 0.133343 4.3:+4044360 None:intergenic
TTGAGAAAGCTGTTCAAAAT+TGG 0.200150 4.3:-4044278 MS.gene55843:CDS
ATTCATGCAGCTGGTGTATT+TGG 0.210043 4.3:-4042687 MS.gene55843:CDS
TCCTTAGGCCAGGTGGTTAT+TGG 0.243011 4.3:-4043532 MS.gene55843:CDS
CTACTTTGAGGCCATTTAAA+AGG 0.243262 4.3:+4044345 None:intergenic
CTCATTCCATGGAGCAAATA+TGG 0.258315 4.3:-4043784 MS.gene55843:intron
TTCAAAAGGACAATGAATTA+TGG 0.259353 4.3:-4042959 MS.gene55843:CDS
CTATATCTTCCTTGAGCAAT+AGG 0.274060 4.3:+4042903 None:intergenic
GCGTTTGGCAACTTCCTCTA+TGG 0.300697 4.3:+4043424 None:intergenic
CATTATTAAAATTTCCAGTT+TGG 0.305235 4.3:-4042836 MS.gene55843:CDS
ACAGAAACATGTTGAAATAT+AGG 0.306859 4.3:-4044437 MS.gene55843:CDS
CAACATTACTGTTATACTAT+TGG 0.313122 4.3:-4042452 MS.gene55843:CDS
TCACTTGAAATAAGTACTTC+TGG 0.335289 4.3:-4044543 MS.gene55843:CDS
GGAAGAAATACTGGAGGGGC+TGG 0.344229 4.3:-4043484 MS.gene55843:CDS
ATTGAACCACTACTAATTCT+AGG 0.344619 4.3:+4043005 None:intergenic
ATTATTAAAATTTCCAGTTT+GGG 0.346106 4.3:-4042835 MS.gene55843:CDS
CAGTATTTCTTCCATCTAAT+AGG 0.347198 4.3:+4043494 None:intergenic
AATTATAAAGGTAGCAAGTT+GGG 0.358008 4.3:-4043983 MS.gene55843:intron
CCATGTGAGTCTATTTCTCT+TGG 0.358721 4.3:+4044749 None:intergenic
ATCTTTGAAAGAGGTTTCAT+TGG 0.366006 4.3:-4042765 MS.gene55843:CDS
TTTCTGGCCCACCTATTAGA+TGG 0.370798 4.3:-4043505 MS.gene55843:CDS
TGGTGATCCATTGTAATCCT+TGG 0.371322 4.3:+4044794 None:intergenic
TCAAGCTGATTATAATGCTT+TGG 0.372036 4.3:+4044774 None:intergenic
CAGAAACATGTTGAAATATA+GGG 0.373112 4.3:-4044436 MS.gene55843:CDS
TTGCTTGAGCTGGTAACTTC+TGG 0.378404 4.3:+4043080 None:intergenic
GGTGATCCATTGTAATCCTT+GGG 0.378516 4.3:+4044795 None:intergenic
GCCATATCAAAAGCCCTTGC+TGG 0.383647 4.3:+4043823 None:intergenic
CTATTAGATGGAAGAAATAC+TGG 0.384247 4.3:-4043493 MS.gene55843:CDS
ATCAGAACTGCAATTGATAC+AGG 0.390635 4.3:-4044141 MS.gene55843:CDS
TGGTGTATTTGGCATATATC+AGG 0.393487 4.3:-4042676 MS.gene55843:CDS
TCCTGCTATGATTGGTATCA+TGG 0.402427 4.3:-4043866 MS.gene55843:CDS
ACAACATTCATAACCCAAAC+TGG 0.404193 4.3:+4042822 None:intergenic
TGAATGAGATCATAAGTTCT+AGG 0.405756 4.3:+4042705 None:intergenic
TCATTGGGACTTACCATGAT+TGG 0.417773 4.3:-4042749 MS.gene55843:CDS
TCCAGCTACTTTGCTTGAGC+TGG 0.418390 4.3:+4043070 None:intergenic
ATTGATATGAATGCTTATCT+TGG 0.425704 4.3:-4042873 MS.gene55843:CDS
TTTCTTCCAACATATGCGTT+TGG 0.430721 4.3:+4043409 None:intergenic
TATGCCTCAGATTGGTTAGT+AGG 0.432612 4.3:+4044660 None:intergenic
GTTTAGTTTGTACACATTCA+AGG 0.437945 4.3:+4043339 None:intergenic
GTTCTCGCTGCCTCATTCCA+TGG 0.445475 4.3:-4043795 MS.gene55843:CDS
CAAAATTGGATTCAAGTTGA+AGG 0.446164 4.3:-4044264 MS.gene55843:CDS
AGAAAGATGACCTTTCCATT+TGG 0.448933 4.3:-4043379 MS.gene55843:CDS
TCAAAAGTAGATTGTAATGT+TGG 0.460424 4.3:-4044636 MS.gene55843:CDS
AATTCAGCTCATGATACTCT+TGG 0.465587 4.3:-4042792 MS.gene55843:CDS
CAAGCATAATCTCTACTTTG+AGG 0.466308 4.3:+4044333 None:intergenic
AATTGCAGTTCTGATATTAC+CGG 0.466760 4.3:+4044149 None:intergenic
CCCAGAAAAGATTCTTGTTG+CGG 0.467901 4.3:-4042293 MS.gene55843:CDS
TCTTTGAAAGAGGTTTCATT+GGG 0.470943 4.3:-4042764 MS.gene55843:CDS
GGTGATCGGTTTCGATTCCC+TGG 0.472490 4.3:-4044243 MS.gene55843:CDS
GTATCATGAGCTGAATTTGA+AGG 0.474584 4.3:+4042798 None:intergenic
GAAGTGGAAGAGCAACATAA+TGG 0.475548 4.3:-4042338 MS.gene55843:CDS
TCCAATAACCACCTGGCCTA+AGG 0.482017 4.3:+4043531 None:intergenic
CTTGGTGCAATCTTTGAAAG+AGG 0.483757 4.3:-4042774 MS.gene55843:CDS
AGAAAGCTTCACACCAATCA+TGG 0.487974 4.3:+4042736 None:intergenic
TCAAAAGCCCTTGCTGGGTA+TGG 0.491448 4.3:+4043829 None:intergenic
ACCAGCTCAAGCAAAGTAGC+TGG 0.491717 4.3:-4043071 MS.gene55843:CDS
AATACTTACCAAGCCATGTC+AGG 0.492107 4.3:+4043278 None:intergenic
AGAGGAGTTCCTGCTATGAT+TGG 0.493820 4.3:-4043874 MS.gene55843:CDS
GATATGAATGCTTATCTTGG+TGG 0.494234 4.3:-4042870 MS.gene55843:CDS
CTGATAATCCTGACATGGCT+TGG 0.495727 4.3:-4043286 MS.gene55843:intron
TACTGTTATACTATTGGAGA+TGG 0.501641 4.3:-4042446 MS.gene55843:CDS
GGATTCAAGTTGAAGGTGAT+CGG 0.505103 4.3:-4044257 MS.gene55843:CDS
GAAGAAATACTGGAGGGGCT+GGG 0.506084 4.3:-4043483 MS.gene55843:CDS
TTTCCATGCACCCATTACAT+AGG 0.506215 4.3:+4044695 None:intergenic
AGCTCAGGTACAGTTTGCAT+TGG 0.506264 4.3:-4043899 MS.gene55843:CDS
TAATTATAAAGGTAGCAAGT+TGG 0.506609 4.3:-4043984 MS.gene55843:intron
CGGTTTCGATTCCCTGGTGG+AGG 0.508041 4.3:-4044237 MS.gene55843:CDS
CTGATATTACCGGTAGTAAG+AGG 0.508735 4.3:+4044159 None:intergenic
TGAGCTTCATGTGTATCTCT+TGG 0.511536 4.3:+4043916 None:intergenic
AATTTCTCTGCAGTGATGCT+TGG 0.514766 4.3:+4042981 None:intergenic
TATGATCTCATTCATGCAGC+TGG 0.517745 4.3:-4042696 MS.gene55843:CDS
GAGCTGGTAACTTCTGGTAA+TGG 0.518242 4.3:+4043086 None:intergenic
GAGCTTATTCCTCTTACTAC+CGG 0.518465 4.3:-4044168 MS.gene55843:CDS
CTGAATACAACTGTACCTTC+TGG 0.521917 4.3:+4042409 None:intergenic
CTCAAAGTAGAGATTATGCT+TGG 0.522721 4.3:-4044332 MS.gene55843:CDS
TGTAATGTTGGATCAACAGC+AGG 0.524580 4.3:-4044624 MS.gene55843:CDS
CGAGGACGATGATGAAATTG+AGG 0.528468 4.3:+4044596 None:intergenic
CACTGCAGAGAAATTTCAAA+AGG 0.531156 4.3:-4042973 MS.gene55843:CDS
TATTTCTTCCATCTAATAGG+TGG 0.536838 4.3:+4043497 None:intergenic
CCAGTCTGATAATCCTGACA+TGG 0.541896 4.3:-4043291 MS.gene55843:CDS
GGTACTGCAAAGGCACGTCT+TGG 0.542582 4.3:+4043029 None:intergenic
AAGAGATACACATGAAGCTC+AGG 0.543833 4.3:-4043914 MS.gene55843:CDS
CATATTTGCTCCATGGAATG+AGG 0.545022 4.3:+4043785 None:intergenic
GGAAACATGGTACCTCCACC+AGG 0.545167 4.3:+4044225 None:intergenic
CCATGTCAGGATTATCAGAC+TGG 0.545882 4.3:+4043291 None:intergenic
CCTCTAGCTGGATCTTGACA+TGG 0.546211 4.3:+4044471 None:intergenic
TTGAAGTGGATAGAGTCCTT+AGG 0.548105 4.3:-4043547 MS.gene55843:CDS
CCATATCAAAAGCCCTTGCT+GGG 0.549809 4.3:+4043824 None:intergenic
CATATCACTCCTATTGCTCA+AGG 0.550740 4.3:-4042912 MS.gene55843:CDS
GTGGATAGAGTCCTTAGGCC+AGG 0.552453 4.3:-4043542 MS.gene55843:CDS
CTCAAGCAAAGTAGCTGGAG+GGG 0.557038 4.3:-4043066 MS.gene55843:CDS
ATCAGCACCGCGAGGAAACA+TGG 0.563999 4.3:+4044212 None:intergenic
TACCAACCATATTTGCTCCA+TGG 0.566081 4.3:+4043778 None:intergenic
TGGTATGTATTTGATTGAAG+TGG 0.568021 4.3:-4043561 MS.gene55843:CDS
TATTTGGCATATATCAGGAT+AGG 0.572492 4.3:-4042671 MS.gene55843:intron
AACATAATGGATCATGAAAG+TGG 0.574348 4.3:-4042325 MS.gene55843:CDS
GAATGAGATCATAAGTTCTA+GGG 0.575775 4.3:+4042706 None:intergenic
GGTACAGTTGTATTCAGAGA+AGG 0.578876 4.3:-4042403 MS.gene55843:CDS
AAAGGCTACCATACCCAGCA+AGG 0.579111 4.3:-4043837 MS.gene55843:CDS
GCCATGATACCAATCATAGC+AGG 0.580506 4.3:+4043865 None:intergenic
ATTTCTTCCATCTAATAGGT+GGG 0.583039 4.3:+4043498 None:intergenic
GATAGAATCTTGAGGCCAGA+AGG 0.587910 4.3:-4042424 MS.gene55843:CDS
CCAAGAGAAATAGACTCACA+TGG 0.591381 4.3:-4044749 MS.gene55843:CDS
TTGAAATAAGTACTTCTGGT+GGG 0.591390 4.3:-4044539 MS.gene55843:CDS
ATTATAAAGGTAGCAAGTTG+GGG 0.592087 4.3:-4043982 MS.gene55843:intron
AAGTTGCCAAACGCATATGT+TGG 0.595240 4.3:-4043415 MS.gene55843:CDS
TTATCAGACTGGCAAATATG+TGG 0.598326 4.3:+4043302 None:intergenic
GTACAGTTTGCATTGGAGAG+AGG 0.599309 4.3:-4043892 MS.gene55843:CDS
AAAGGACAATGAATTATGGA+AGG 0.600355 4.3:-4042955 MS.gene55843:CDS
CTTGAAATAAGTACTTCTGG+TGG 0.600492 4.3:-4044540 MS.gene55843:CDS
GATCGGTTTCGATTCCCTGG+TGG 0.605900 4.3:-4044240 MS.gene55843:CDS
GCTCAAGCAAAGTAGCTGGA+GGG 0.607755 4.3:-4043067 MS.gene55843:CDS
AGCTCAAGCAAAGTAGCTGG+AGG 0.608310 4.3:-4043068 MS.gene55843:CDS
GCAAGAGCAAGATTCCATAG+AGG 0.609694 4.3:-4043438 MS.gene55843:CDS
TCAATGCTAAGCTCTTTGTG+TGG 0.613939 4.3:+4044297 None:intergenic
TGTCCTATGTAATGGGTGCA+TGG 0.614566 4.3:-4044698 MS.gene55843:CDS
GTGTTACTGATGCAATGAAG+TGG 0.625030 4.3:-4042354 MS.gene55843:CDS
GGGCTGGGAAAGAACTGAAG+AGG 0.627289 4.3:-4043468 MS.gene55843:CDS
TAGATGGAAGAAATACTGGA+GGG 0.629603 4.3:-4043489 MS.gene55843:CDS
TCACTATATGTCATGTCACA+TGG 0.634015 4.3:+4044501 None:intergenic
AGATGGAAGAAATACTGGAG+GGG 0.651671 4.3:-4043488 MS.gene55843:CDS
GAAAGAATCCAATAACCACC+TGG 0.654203 4.3:+4043524 None:intergenic
AAAATGCCCAAGGATTACAA+TGG 0.656503 4.3:-4044801 MS.gene55843:CDS
TCAGAACTGCAATTGATACA+GGG 0.660831 4.3:-4044140 MS.gene55843:CDS
AACACCTACTAACCAATCTG+AGG 0.662097 4.3:-4044664 MS.gene55843:CDS
TGGAGATGGATAGAATCTTG+AGG 0.664431 4.3:-4042432 MS.gene55843:CDS
CCATGTCAAGATCCAGCTAG+AGG 0.667824 4.3:-4044471 MS.gene55843:CDS
TTAGATGGAAGAAATACTGG+AGG 0.668874 4.3:-4043490 MS.gene55843:CDS
GTACCTCCTAGAATTAGTAG+TGG 0.671372 4.3:-4043011 MS.gene55843:CDS
AAGGCTACCATACCCAGCAA+GGG 0.674658 4.3:-4043836 MS.gene55843:CDS
ACTGCAATTGATACAGGGTG+TGG 0.682693 4.3:-4044135 MS.gene55843:CDS
AATTCTAGGAGGTACTGCAA+AGG 0.682768 4.3:+4043019 None:intergenic
GAACCACTACTAATTCTAGG+AGG 0.691410 4.3:+4043008 None:intergenic
CTATATGTCATGTCACATGG+TGG 0.691797 4.3:+4044504 None:intergenic
TTGGTATCATGGCTTCACAA+AGG 0.696029 4.3:-4043855 MS.gene55843:CDS
GATAGAGTCCTTAGGCCAGG+TGG 0.700562 4.3:-4043539 MS.gene55843:CDS
GGAGGTACCATGTTTCCTCG+CGG 0.714635 4.3:-4044219 MS.gene55843:CDS
GAAACATGGTACCTCCACCA+GGG 0.720834 4.3:+4044226 None:intergenic
ATGTACGCATCAGCACCGCG+AGG 0.786908 4.3:+4044204 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTAAAATTTCCAGTTT+GGG - chr4.3:4044212-4044231 MS.gene55843:CDS 15.0%
!!! ATTTAACCTTGTAATTTTAA+AGG + chr4.3:4043801-4043820 None:intergenic 15.0%
!!! TTTAACCTTGTAATTTTAAA+GGG + chr4.3:4043800-4043819 None:intergenic 15.0%
!! AATTAATTGTTATGTATGGA+AGG - chr4.3:4044570-4044589 MS.gene55843:CDS 20.0%
!! ACTGAATTAATTGTTATGTA+TGG - chr4.3:4044566-4044585 MS.gene55843:CDS 20.0%
!! CAAATTCAAATCAAATGTTA+GGG - chr4.3:4042997-4043016 MS.gene55843:CDS 20.0%
!! CATTATTAAAATTTCCAGTT+TGG - chr4.3:4044211-4044230 MS.gene55843:CDS 20.0%
!! TACATGATATTATAAGTTGT+TGG - chr4.3:4044443-4044462 MS.gene55843:CDS 20.0%
!! TCAAATTCAAATCAAATGTT+AGG - chr4.3:4042996-4043015 MS.gene55843:CDS 20.0%
!! TCATGTGAATCTAATTATAA+AGG - chr4.3:4043052-4043071 MS.gene55843:CDS 20.0%
!! TTATAATTAGATTCACATGA+AGG + chr4.3:4043052-4043071 None:intergenic 20.0%
!!! AATATAAGACACCTTTTAAA+TGG - chr4.3:4042691-4042710 MS.gene55843:CDS 20.0%
!!! ATCAAATTTTAAACATGCAA+AGG + chr4.3:4043868-4043887 None:intergenic 20.0%
!!! ATTAGTTTATTACTTATGGT+CGG + chr4.3:4043435-4043454 None:intergenic 20.0%
!!! GCATATTAGTTTATTACTTA+TGG + chr4.3:4043439-4043458 None:intergenic 20.0%
!!! TACCAAAACATATTTTTATG+AGG + chr4.3:4043845-4043864 None:intergenic 20.0%
!!! TGTTTGATTTGCATTTAAAA+AGG - chr4.3:4043911-4043930 MS.gene55843:CDS 20.0%
!!! TTAAAAGGTGTCTTATATTT+TGG + chr4.3:4042690-4042709 None:intergenic 20.0%
!!! TTTAAAAAGGTACCAAAATA+TGG - chr4.3:4043924-4043943 MS.gene55843:CDS 20.0%
!!! TTTTTATTTGCTACACAATT+TGG - chr4.3:4043310-4043329 MS.gene55843:CDS 20.0%
! AATTATAAAGGTAGCAAGTT+GGG - chr4.3:4043064-4043083 MS.gene55843:CDS 25.0%
! ACAGAAACATGTTGAAATAT+AGG - chr4.3:4042610-4042629 MS.gene55843:intron 25.0%
! ATTGAAAATCATCTATCAGT+TGG - chr4.3:4044510-4044529 MS.gene55843:CDS 25.0%
! ATTGATATGAATGCTTATCT+TGG - chr4.3:4044174-4044193 MS.gene55843:CDS 25.0%
! CAACATTACTGTTATACTAT+TGG - chr4.3:4044595-4044614 MS.gene55843:CDS 25.0%
! CAGAAACATGTTGAAATATA+GGG - chr4.3:4042611-4042630 MS.gene55843:intron 25.0%
! GTGTAGCAAATAAAAATAGT+AGG + chr4.3:4043306-4043325 None:intergenic 25.0%
! TAATTATAAAGGTAGCAAGT+TGG - chr4.3:4043063-4043082 MS.gene55843:CDS 25.0%
! TCAAAAGTAGATTGTAATGT+TGG - chr4.3:4042411-4042430 MS.gene55843:CDS 25.0%
! TTCAAAAGGACAATGAATTA+TGG - chr4.3:4044088-4044107 MS.gene55843:intron 25.0%
!! ATGTATTTTGTCCTATGTAA+TGG - chr4.3:4042341-4042360 MS.gene55843:CDS 25.0%
!! CACCTCATAAAAATATGTTT+TGG - chr4.3:4043840-4043859 MS.gene55843:CDS 25.0%
!! CTTTCTTCTTTAAGAATAAG+AGG + chr4.3:4043393-4043412 None:intergenic 25.0%
!! TGTATTTTGTCCTATGTAAT+GGG - chr4.3:4042342-4042361 MS.gene55843:CDS 25.0%
!! TTATGCACTTTTCCATATTT+TGG + chr4.3:4043939-4043958 None:intergenic 25.0%
!! TTGAATTTGAGATGTACAAA+GGG + chr4.3:4042986-4043005 None:intergenic 25.0%
!! TTTGAATTTGAGATGTACAA+AGG + chr4.3:4042987-4043006 None:intergenic 25.0%
!!! AAAATCTAATTTTGAAGACG+AGG + chr4.3:4042472-4042491 None:intergenic 25.0%
!!! CTTTACCCTTTAAAATTACA+AGG - chr4.3:4043792-4043811 MS.gene55843:CDS 25.0%
AAAGGACAATGAATTATGGA+AGG - chr4.3:4044092-4044111 MS.gene55843:intron 30.0%
AGCTACATGATTAGATAAAG+TGG + chr4.3:4044411-4044430 None:intergenic 30.0%
ATTATAAAGGTAGCAAGTTG+GGG - chr4.3:4043065-4043084 MS.gene55843:CDS 30.0%
ATTGAACCACTACTAATTCT+AGG + chr4.3:4044045-4044064 None:intergenic 30.0%
ATTTCTTCCATCTAATAGGT+GGG + chr4.3:4043552-4043571 None:intergenic 30.0%
CAGTATTTCTTCCATCTAAT+AGG + chr4.3:4043556-4043575 None:intergenic 30.0%
CTATTAGATGGAAGAAATAC+TGG - chr4.3:4043554-4043573 MS.gene55843:CDS 30.0%
GAATGAGATCATAAGTTCTA+GGG + chr4.3:4044344-4044363 None:intergenic 30.0%
GCAAATCAAACAGAGAAAAA+TGG + chr4.3:4043903-4043922 None:intergenic 30.0%
TACTGTTATACTATTGGAGA+TGG - chr4.3:4044601-4044620 MS.gene55843:CDS 30.0%
TATTTCTTCCATCTAATAGG+TGG + chr4.3:4043553-4043572 None:intergenic 30.0%
TATTTGGCATATATCAGGAT+AGG - chr4.3:4044376-4044395 MS.gene55843:CDS 30.0%
TCAAGCTGATTATAATGCTT+TGG + chr4.3:4042276-4042295 None:intergenic 30.0%
TCACTTGAAATAAGTACTTC+TGG - chr4.3:4042504-4042523 MS.gene55843:intron 30.0%
TGAATGAGATCATAAGTTCT+AGG + chr4.3:4044345-4044364 None:intergenic 30.0%
TGGTATGTATTTGATTGAAG+TGG - chr4.3:4043486-4043505 MS.gene55843:CDS 30.0%
TTGAAATAAGTACTTCTGGT+GGG - chr4.3:4042508-4042527 MS.gene55843:intron 30.0%
TTGAGAAAGCTGTTCAAAAT+TGG - chr4.3:4042769-4042788 MS.gene55843:CDS 30.0%
TTGTTGCGGAAAAAACTTAT+TGG - chr4.3:4044768-4044787 MS.gene55843:CDS 30.0%
! AAGAATCTTTTCTGGGTTAA+AGG + chr4.3:4044750-4044769 None:intergenic 30.0%
! AATAGACTCACATGGATTTT+AGG - chr4.3:4042306-4042325 MS.gene55843:CDS 30.0%
! AATTGCAGTTCTGATATTAC+CGG + chr4.3:4042901-4042920 None:intergenic 30.0%
! ACACATTCAAGGTGATTTTT+AGG + chr4.3:4043700-4043719 None:intergenic 30.0%
! AGAATCTTTTCTGGGTTAAA+GGG + chr4.3:4044749-4044768 None:intergenic 30.0%
! ATCTTTGAAAGAGGTTTCAT+TGG - chr4.3:4044282-4044301 MS.gene55843:CDS 30.0%
! CTATTATGTCCCTTTTCAAA+AGG + chr4.3:4043097-4043116 None:intergenic 30.0%
! TACAAAAGCTCTTCTTTTGT+AGG + chr4.3:4042648-4042667 None:intergenic 30.0%
! TCTTTGAAAGAGGTTTCATT+GGG - chr4.3:4044283-4044302 MS.gene55843:CDS 30.0%
! TTATTTGCTACACAATTTGG+TGG - chr4.3:4043313-4043332 MS.gene55843:CDS 30.0%
!! AACATAATGGATCATGAAAG+TGG - chr4.3:4044722-4044741 MS.gene55843:CDS 30.0%
!! ATTTTTAGGCTTTTGCCAAA+TGG + chr4.3:4043686-4043705 None:intergenic 30.0%
!! CAAAATTGGATTCAAGTTGA+AGG - chr4.3:4042783-4042802 MS.gene55843:CDS 30.0%
!! GTTTAGTTTGTACACATTCA+AGG + chr4.3:4043711-4043730 None:intergenic 30.0%
!!! AAAGGTGTCTTATATTTTGG+AGG + chr4.3:4042687-4042706 None:intergenic 30.0%
AATTCAGCTCATGATACTCT+TGG - chr4.3:4044255-4044274 MS.gene55843:CDS 35.0%
ACAACATTCATAACCCAAAC+TGG + chr4.3:4044228-4044247 None:intergenic 35.0%
AGAAAGATGACCTTTCCATT+TGG - chr4.3:4043668-4043687 MS.gene55843:intron 35.0%
ATCAGAACTGCAATTGATAC+AGG - chr4.3:4042906-4042925 MS.gene55843:CDS 35.0%
CAAGCATAATCTCTACTTTG+AGG + chr4.3:4042717-4042736 None:intergenic 35.0%
CACTGCAGAGAAATTTCAAA+AGG - chr4.3:4044074-4044093 MS.gene55843:intron 35.0%
CGGAAAAAACTTATTGGACT+GGG - chr4.3:4044774-4044793 MS.gene55843:CDS 35.0%
CTATATCTTCCTTGAGCAAT+AGG + chr4.3:4044147-4044166 None:intergenic 35.0%
CTCAAAGTAGAGATTATGCT+TGG - chr4.3:4042715-4042734 MS.gene55843:CDS 35.0%
CTTGAAATAAGTACTTCTGG+TGG - chr4.3:4042507-4042526 MS.gene55843:intron 35.0%
GATATGAATGCTTATCTTGG+TGG - chr4.3:4044177-4044196 MS.gene55843:CDS 35.0%
GGAAAAAACTTATTGGACTG+GGG - chr4.3:4044775-4044794 MS.gene55843:CDS 35.0%
GTATCATGAGCTGAATTTGA+AGG + chr4.3:4044252-4044271 None:intergenic 35.0%
TAGATGGAAGAAATACTGGA+GGG - chr4.3:4043558-4043577 MS.gene55843:CDS 35.0%
TCACTATATGTCATGTCACA+TGG + chr4.3:4042549-4042568 None:intergenic 35.0%
TCAGAACTGCAATTGATACA+GGG - chr4.3:4042907-4042926 MS.gene55843:CDS 35.0%
TGGTGTATTTGGCATATATC+AGG - chr4.3:4044371-4044390 MS.gene55843:CDS 35.0%
TTAGATGGAAGAAATACTGG+AGG - chr4.3:4043557-4043576 MS.gene55843:CDS 35.0%
TTATCAGACTGGCAAATATG+TGG + chr4.3:4043748-4043767 None:intergenic 35.0%
TTTCTTCCAACATATGCGTT+TGG + chr4.3:4043641-4043660 None:intergenic 35.0%
! GAAAAAACTTATTGGACTGG+GGG - chr4.3:4044776-4044795 MS.gene55843:CDS 35.0%
! TATGTCCCTTTTCAAAAGGT+AGG + chr4.3:4043093-4043112 None:intergenic 35.0%
! TCAAATTTTCTACCTCTAGC+TGG + chr4.3:4042591-4042610 None:intergenic 35.0%
!! ACATGGATTTTAGGTGTAAG+TGG - chr4.3:4042315-4042334 MS.gene55843:CDS 35.0%
!! CTACTTTGAGGCCATTTAAA+AGG + chr4.3:4042705-4042724 None:intergenic 35.0%
AACACCTACTAACCAATCTG+AGG - chr4.3:4042383-4042402 MS.gene55843:CDS 40.0%
AAGAGATACACATGAAGCTC+AGG - chr4.3:4043133-4043152 MS.gene55843:intron 40.0%
AAGTTGCCAAACGCATATGT+TGG - chr4.3:4043632-4043651 MS.gene55843:intron 40.0%
AATACATACCATCTGTGCCA+TGG + chr4.3:4043477-4043496 None:intergenic 40.0%
AATACTTACCAAGCCATGTC+AGG + chr4.3:4043772-4043791 None:intergenic 40.0%
AATTTCTCTGCAGTGATGCT+TGG + chr4.3:4044069-4044088 None:intergenic 40.0%
AGAAAGCTTCACACCAATCA+TGG + chr4.3:4044314-4044333 None:intergenic 40.0%
AGATGGAAGAAATACTGGAG+GGG - chr4.3:4043559-4043578 MS.gene55843:CDS 40.0%
ATTCATGCAGCTGGTGTATT+TGG - chr4.3:4044360-4044379 MS.gene55843:CDS 40.0%
CATATCACTCCTATTGCTCA+AGG - chr4.3:4044135-4044154 MS.gene55843:CDS 40.0%
CATATTTGCTCCATGGAATG+AGG + chr4.3:4043265-4043284 None:intergenic 40.0%
CCAAGAGAAATAGACTCACA+TGG - chr4.3:4042298-4042317 MS.gene55843:CDS 40.0%
CCCAGAAAAGATTCTTGTTG+CGG - chr4.3:4044754-4044773 MS.gene55843:CDS 40.0%
CTATATGTCATGTCACATGG+TGG + chr4.3:4042546-4042565 None:intergenic 40.0%
CTCATTCCATGGAGCAAATA+TGG - chr4.3:4043263-4043282 MS.gene55843:intron 40.0%
CTGAATACAACTGTACCTTC+TGG + chr4.3:4044641-4044660 None:intergenic 40.0%
CTGATATTACCGGTAGTAAG+AGG + chr4.3:4042891-4042910 None:intergenic 40.0%
GAAAGAATCCAATAACCACC+TGG + chr4.3:4043526-4043545 None:intergenic 40.0%
GAACCACTACTAATTCTAGG+AGG + chr4.3:4044042-4044061 None:intergenic 40.0%
GAAGTGGAAGAGCAACATAA+TGG - chr4.3:4044709-4044728 MS.gene55843:CDS 40.0%
GAGCTTATTCCTCTTACTAC+CGG - chr4.3:4042879-4042898 MS.gene55843:CDS 40.0%
GCAAGCTTTGCAAATTTCCA+TGG - chr4.3:4043457-4043476 MS.gene55843:CDS 40.0%
GCGGAAAAAACTTATTGGAC+TGG - chr4.3:4044773-4044792 MS.gene55843:CDS 40.0%
GGTACAGTTGTATTCAGAGA+AGG - chr4.3:4044644-4044663 MS.gene55843:CDS 40.0%
GGTGATCCATTGTAATCCTT+GGG + chr4.3:4042255-4042274 None:intergenic 40.0%
GGTGGTTATTGGATTCTTTC+TGG - chr4.3:4043526-4043545 MS.gene55843:CDS 40.0%
GTACCTCCTAGAATTAGTAG+TGG - chr4.3:4044036-4044055 MS.gene55843:intron 40.0%
TACCAACCATATTTGCTCCA+TGG + chr4.3:4043272-4043291 None:intergenic 40.0%
TATGATCTCATTCATGCAGC+TGG - chr4.3:4044351-4044370 MS.gene55843:CDS 40.0%
TCAATGCTAAGCTCTTTGTG+TGG + chr4.3:4042753-4042772 None:intergenic 40.0%
TCATTGGGACTTACCATGAT+TGG - chr4.3:4044298-4044317 MS.gene55843:CDS 40.0%
TCCTGCTATGATTGGTATCA+TGG - chr4.3:4043181-4043200 MS.gene55843:intron 40.0%
TGAGCTTCATGTGTATCTCT+TGG + chr4.3:4043134-4043153 None:intergenic 40.0%
TGGAGATGGATAGAATCTTG+AGG - chr4.3:4044615-4044634 MS.gene55843:CDS 40.0%
TGGCATATATCAGGATAGGT+TGG - chr4.3:4044380-4044399 MS.gene55843:CDS 40.0%
TGGTGATCCATTGTAATCCT+TGG + chr4.3:4042256-4042275 None:intergenic 40.0%
TGTAATGTTGGATCAACAGC+AGG - chr4.3:4042423-4042442 MS.gene55843:CDS 40.0%
TTCCATGGAGCAAATATGGT+TGG - chr4.3:4043267-4043286 MS.gene55843:intron 40.0%
TTGAAGTGGATAGAGTCCTT+AGG - chr4.3:4043500-4043519 MS.gene55843:CDS 40.0%
TTGGTATCATGGCTTCACAA+AGG - chr4.3:4043192-4043211 MS.gene55843:intron 40.0%
TTTCCATGCACCCATTACAT+AGG + chr4.3:4042355-4042374 None:intergenic 40.0%
! CCATGTGAGTCTATTTCTCT+TGG + chr4.3:4042301-4042320 None:intergenic 40.0%
! CCGCAACAAGAATCTTTTCT+GGG + chr4.3:4044757-4044776 None:intergenic 40.0%
! CTTGGTGCAATCTTTGAAAG+AGG - chr4.3:4044273-4044292 MS.gene55843:CDS 40.0%
! GTGTTACTGATGCAATGAAG+TGG - chr4.3:4044693-4044712 MS.gene55843:CDS 40.0%
! TAGGCTTTTGCCAAATGGAA+AGG + chr4.3:4043681-4043700 None:intergenic 40.0%
! TATGCCTCAGATTGGTTAGT+AGG + chr4.3:4042390-4042409 None:intergenic 40.0%
! TCCGCAACAAGAATCTTTTC+TGG + chr4.3:4044758-4044777 None:intergenic 40.0%
!! AATTCTAGGAGGTACTGCAA+AGG + chr4.3:4044031-4044050 None:intergenic 40.0%
!! CTTTTGAGTATGCCTCAGAT+TGG + chr4.3:4042398-4042417 None:intergenic 40.0%
!! GGATTCAAGTTGAAGGTGAT+CGG - chr4.3:4042790-4042809 MS.gene55843:CDS 40.0%
!! GTCTTATATTTTGGAGGAGC+AGG + chr4.3:4042681-4042700 None:intergenic 40.0%
ACTGCAATTGATACAGGGTG+TGG - chr4.3:4042912-4042931 MS.gene55843:CDS 45.0%
AGAGGAGTTCCTGCTATGAT+TGG - chr4.3:4043173-4043192 MS.gene55843:intron 45.0%
AGCTCAGGTACAGTTTGCAT+TGG - chr4.3:4043148-4043167 MS.gene55843:intron 45.0%
CCAGTCTGATAATCCTGACA+TGG - chr4.3:4043756-4043775 MS.gene55843:intron 45.0%
CCATATCAAAAGCCCTTGCT+GGG + chr4.3:4043226-4043245 None:intergenic 45.0%
CCATGTCAGGATTATCAGAC+TGG + chr4.3:4043759-4043778 None:intergenic 45.0%
CGAGGACGATGATGAAATTG+AGG + chr4.3:4042454-4042473 None:intergenic 45.0%
CTGATAATCCTGACATGGCT+TGG - chr4.3:4043761-4043780 MS.gene55843:intron 45.0%
CTGGAGGGGAACTAGAAAAA+TGG - chr4.3:4043995-4044014 MS.gene55843:intron 45.0%
GAGCTGGTAACTTCTGGTAA+TGG + chr4.3:4043964-4043983 None:intergenic 45.0%
GATAGAATCTTGAGGCCAGA+AGG - chr4.3:4044623-4044642 MS.gene55843:CDS 45.0%
GCAAATTTCCATGGCACAGA+TGG - chr4.3:4043466-4043485 MS.gene55843:CDS 45.0%
GCAAGAGCAAGATTCCATAG+AGG - chr4.3:4043609-4043628 MS.gene55843:intron 45.0%
GCCATGATACCAATCATAGC+AGG + chr4.3:4043185-4043204 None:intergenic 45.0%
GTACAGTTTGCATTGGAGAG+AGG - chr4.3:4043155-4043174 MS.gene55843:intron 45.0%
TTGCTTGAGCTGGTAACTTC+TGG + chr4.3:4043970-4043989 None:intergenic 45.0%
! TTTCTGGCCCACCTATTAGA+TGG - chr4.3:4043542-4043561 MS.gene55843:CDS 45.0%
!! GGGTGCCTACCTTTTGAAAA+GGG - chr4.3:4043085-4043104 MS.gene55843:CDS 45.0%
!! TGTCCTATGTAATGGGTGCA+TGG - chr4.3:4042349-4042368 MS.gene55843:CDS 45.0%
AAAGGCTACCATACCCAGCA+AGG - chr4.3:4043210-4043229 MS.gene55843:intron 50.0%
AAGGCTACCATACCCAGCAA+GGG - chr4.3:4043211-4043230 MS.gene55843:intron 50.0%
ACCAGCTCAAGCAAAGTAGC+TGG - chr4.3:4043976-4043995 MS.gene55843:CDS 50.0%
AGCTCAAGCAAAGTAGCTGG+AGG - chr4.3:4043979-4043998 MS.gene55843:intron 50.0%
CCATGTCAAGATCCAGCTAG+AGG - chr4.3:4042576-4042595 MS.gene55843:intron 50.0%
CCTCTAGCTGGATCTTGACA+TGG + chr4.3:4042579-4042598 None:intergenic 50.0%
CTCAAGCAAAGTAGCTGGAG+GGG - chr4.3:4043981-4044000 MS.gene55843:intron 50.0%
GAAACATGGTACCTCCACCA+GGG + chr4.3:4042824-4042843 None:intergenic 50.0%
GAAGAAATACTGGAGGGGCT+GGG - chr4.3:4043564-4043583 MS.gene55843:CDS 50.0%
GCCATATCAAAAGCCCTTGC+TGG + chr4.3:4043227-4043246 None:intergenic 50.0%
GCGTTTGGCAACTTCCTCTA+TGG + chr4.3:4043626-4043645 None:intergenic 50.0%
GCTCAAGCAAAGTAGCTGGA+GGG - chr4.3:4043980-4043999 MS.gene55843:intron 50.0%
TCAAAAGCCCTTGCTGGGTA+TGG + chr4.3:4043221-4043240 None:intergenic 50.0%
TCCAATAACCACCTGGCCTA+AGG + chr4.3:4043519-4043538 None:intergenic 50.0%
TCCTTAGGCCAGGTGGTTAT+TGG - chr4.3:4043515-4043534 MS.gene55843:CDS 50.0%
! CCCAGCAAGGGCTTTTGATA+TGG - chr4.3:4043223-4043242 MS.gene55843:intron 50.0%
! TCCAGCTACTTTGCTTGAGC+TGG + chr4.3:4043980-4043999 None:intergenic 50.0%
!! GGGGTGCCTACCTTTTGAAA+AGG - chr4.3:4043084-4043103 MS.gene55843:CDS 50.0%
ATCAGCACCGCGAGGAAACA+TGG + chr4.3:4042838-4042857 None:intergenic 55.0%
GATAGAGTCCTTAGGCCAGG+TGG - chr4.3:4043508-4043527 MS.gene55843:CDS 55.0%
GGAAACATGGTACCTCCACC+AGG + chr4.3:4042825-4042844 None:intergenic 55.0%
GGAAGAAATACTGGAGGGGC+TGG - chr4.3:4043563-4043582 MS.gene55843:CDS 55.0%
GGGCTGGGAAAGAACTGAAG+AGG - chr4.3:4043579-4043598 MS.gene55843:intron 55.0%
GTGGATAGAGTCCTTAGGCC+AGG - chr4.3:4043505-4043524 MS.gene55843:CDS 55.0%
GTTCTCGCTGCCTCATTCCA+TGG - chr4.3:4043252-4043271 MS.gene55843:intron 55.0%
! GATCGGTTTCGATTCCCTGG+TGG - chr4.3:4042807-4042826 MS.gene55843:CDS 55.0%
! GGTACTGCAAAGGCACGTCT+TGG + chr4.3:4044021-4044040 None:intergenic 55.0%
! GGTGATCGGTTTCGATTCCC+TGG - chr4.3:4042804-4042823 MS.gene55843:CDS 55.0%
!! GGAGGTACCATGTTTCCTCG+CGG - chr4.3:4042828-4042847 MS.gene55843:CDS 55.0%
ATGTACGCATCAGCACCGCG+AGG + chr4.3:4042846-4042865 None:intergenic 60.0%
CGGTTTCGATTCCCTGGTGG+AGG - chr4.3:4042810-4042829 MS.gene55843:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 4042249 4044820 4042249 ID=MS.gene55843
chr4.3 mRNA 4042249 4044820 4042249 ID=MS.gene55843.t1;Parent=MS.gene55843
chr4.3 exon 4044134 4044820 4044134 ID=MS.gene55843.t1.exon1;Parent=MS.gene55843.t1
chr4.3 CDS 4044134 4044820 4044134 ID=cds.MS.gene55843.t1;Parent=MS.gene55843.t1
chr4.3 exon 4043785 4043995 4043785 ID=MS.gene55843.t1.exon2;Parent=MS.gene55843.t1
chr4.3 CDS 4043785 4043995 4043785 ID=cds.MS.gene55843.t1;Parent=MS.gene55843.t1
chr4.3 exon 4043287 4043584 4043287 ID=MS.gene55843.t1.exon3;Parent=MS.gene55843.t1
chr4.3 CDS 4043287 4043584 4043287 ID=cds.MS.gene55843.t1;Parent=MS.gene55843.t1
chr4.3 exon 4042672 4043136 4042672 ID=MS.gene55843.t1.exon4;Parent=MS.gene55843.t1
chr4.3 CDS 4042672 4043136 4042672 ID=cds.MS.gene55843.t1;Parent=MS.gene55843.t1
chr4.3 exon 4042249 4042477 4042249 ID=MS.gene55843.t1.exon5;Parent=MS.gene55843.t1
chr4.3 CDS 4042249 4042477 4042249 ID=cds.MS.gene55843.t1;Parent=MS.gene55843.t1
Gene Sequence

>MS.gene55843

ATGCCCAAGGATTACAATGGATCACCAAAGCATTATAATCAGCTTGAATCCAAGAGAAATAGACTCACATGGATTTTAGGTGTAAGTGGTCTATGTATTTTGTCCTATGTAATGGGTGCATGGAAAAATACAGCAACACCTACTAACCAATCTGAGGCATACTCAAAAGTAGATTGTAATGTTGGATCAACAGCAGGTTCTTCCTCAATTTCATCATCGTCCTCGTCTTCAAAATTAGATTTTGCTAGTCATCATTCACTTGAAATAAGTACTTCTGGTGGGATAAAAGAGTTTCCACCATGTGACATGACATATAGTGAATACACACCATGTCAAGATCCAGCTAGAGGTAGAAAATTTGACAGAAACATGTTGAAATATAGGGAGAGACATTGTCCTACAAAAGAAGAGCTTTTGTATTGTCTTATACCTGCTCCTCCAAAATATAAGACACCTTTTAAATGGCCTCAAAGTAGAGATTATGCTTGGTATGATAATATTCCACACAAAGAGCTTAGCATTGAGAAAGCTGTTCAAAATTGGATTCAAGTTGAAGGTGATCGGTTTCGATTCCCTGGTGGAGGTACCATGTTTCCTCGCGGTGCTGATGCGTACATTGATGACATTAATGAGCTTATTCCTCTTACTACCGGTAATATCAGAACTGCAATTGATACAGGGTGTGGTGTAAGTTCATTCATCTATACACTTAATCATGATTTGTTTTATGTTTTCCCTTTGTACATCTCAAATTCAAATCAAATGTTAGGGTTATGCATATGTTGCTAACACTTTATATACCTTCATGTGAATCTAATTATAAAGGTAGCAAGTTGGGGTGCCTACCTTTTGAAAAGGGACATAATAGCAATGTCATTTGCACCAAGAGATACACATGAAGCTCAGGTACAGTTTGCATTGGAGAGAGGAGTTCCTGCTATGATTGGTATCATGGCTTCACAAAGGCTACCATACCCAGCAAGGGCTTTTGATATGGCTCATTGTTCTCGCTGCCTCATTCCATGGAGCAAATATGGTTGGTATTCACACTTCTCCTACTATTTTTATTTGCTACACAATTTGGTGGTATTTTGCAATTAAGAGACAAATAGTCAATTAAGATTTAAGAGACATTTCAAGTCCTCTTATTCTTAAAGAAGAAAGAATTAAAAAAATTCTTATGCCGACCATAAGTAATAAACTAATATGCAAGCTTTGCAAATTTCCATGGCACAGATGGTATGTATTTGATTGAAGTGGATAGAGTCCTTAGGCCAGGTGGTTATTGGATTCTTTCTGGCCCACCTATTAGATGGAAGAAATACTGGAGGGGCTGGGAAAGAACTGAAGAGGATTTAAAGCAAGAGCAAGATTCCATAGAGGAAGTTGCCAAACGCATATGTTGGAAGAAAGTTGTTGAGAAAGATGACCTTTCCATTTGGCAAAAGCCTAAAAATCACCTTGAATGTGTACAAACTAAACAAGTCTTTAAAACACCACATATTTGCCAGTCTGATAATCCTGACATGGCTTGGTAAGTATTCTTTACCCTTTAAAATTACAAGGTTAAATTCTCTTAGCAGTGAACTTACACCTCATAAAAATATGTTTTGGTACCTTTGCATGTTTAAAATTTGATATATTTTGTTTACCATTTTTCTCTGTTTGATTTGCATTTAAAAAGGTACCAAAATATGGAAAAGTGCATAACTCCATTACCAGAAGTTACCAGCTCAAGCAAAGTAGCTGGAGGGGAACTAGAAAAATGGCCAAGACGTGCCTTTGCAGTACCTCCTAGAATTAGTAGTGGTTCAATACCAAGCATCACTGCAGAGAAATTTCAAAAGGACAATGAATTATGGAAGGACAGAATGTCACATTACAAGCATATCACTCCTATTGCTCAAGGAAGATATAGAAACATTATTGATATGAATGCTTATCTTGGTGGATTTGCAGCAGCATTATTAAAATTTCCAGTTTGGGTTATGAATGTTGTTCCTTCAAATTCAGCTCATGATACTCTTGGTGCAATCTTTGAAAGAGGTTTCATTGGGACTTACCATGATTGGTGTGAAGCTTTCTCAACTTACCCTAGAACTTATGATCTCATTCATGCAGCTGGTGTATTTGGCATATATCAGGATAGGTTGGTATTTCCACTTTATCTAATCATGTAGCTTTAATAATTTGTTACATGATATTATAAGTTGTTGGTGAAGTGCAGTATAGTCTCTAAAATCAAAGAAATGATTCTTGAAATTGAAAATCATCTATCAGTTGGTATCATTTCTATATGTTTTATCATGTGTTTTTGACTGAATTAATTGTTATGTATGGAAGGTGCAACATTACTGTTATACTATTGGAGATGGATAGAATCTTGAGGCCAGAAGGTACAGTTGTATTCAGAGAAGGAGTAGAGCTTCTCACAAAGATTAAAAGTGTTACTGATGCAATGAAGTGGAAGAGCAACATAATGGATCATGAAAGTGGACCCTTTAACCCAGAAAAGATTCTTGTTGCGGAAAAAACTTATTGGACTGGGGGAGCTAAAGATAATAGCAACTAA
Protein sequence

>MS.gene55843.t1

MPKDYNGSPKHYNQLESKRNRLTWILGVSGLCILSYVMGAWKNTATPTNQSEAYSKVDCNVGSTAGSSSISSSSSSSKLDFASHHSLEISTSGGIKEFPPCDMTYSEYTPCQDPARGRKFDRNMLKYRERHCPTKEELLYCLIPAPPKYKTPFKWPQSRDYAWYDNIPHKELSIEKAVQNWIQVEGDRFRFPGGGTMFPRGADAYIDDINELIPLTTGNIRTAIDTGCGVASWGAYLLKRDIIAMSFAPRDTHEAQVQFALERGVPAMIGIMASQRLPYPARAFDMAHCSRCLIPWSKYDGMYLIEVDRVLRPGGYWILSGPPIRWKKYWRGWERTEEDLKQEQDSIEEVAKRICWKKVVEKDDLSIWQKPKNHLECVQTKQVFKTPHICQSDNPDMAWYQNMEKCITPLPEVTSSSKVAGGELEKWPRRAFAVPPRISSGSIPSITAEKFQKDNELWKDRMSHYKHITPIAQGRYRNIIDMNAYLGGFAAALLKFPVWVMNVVPSNSAHDTLGAIFERGFIGTYHDWCEAFSTYPRTYDLIHAAGVFGIYQDRCNITVILLEMDRILRPEGTVVFREGVELLTKIKSVTDAMKWKSNIMDHESGPFNPEKILVAEKTYWTGGAKDNSN