AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55873

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55873.t1 MTR_8g101570 93.151 292 14 1 1 292 1 286 0.0 553
MS.gene55873.t1 MTR_6g092660 59.000 300 109 4 1 293 1 293 3.90e-121 349
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55873.t1 AT2G19570 56.678 307 109 5 1 292 1 298 3.38e-116 337
MS.gene55873.t1 AT4G29600 49.020 306 133 7 2 295 5 299 2.75e-90 271
MS.gene55873.t1 AT4G29610 50.365 274 120 5 28 292 21 287 7.33e-89 267
MS.gene55873.t1 AT4G29620 45.395 304 139 7 2 295 26 312 4.33e-78 241
MS.gene55873.t1 AT4G29640 43.206 287 147 7 16 292 13 293 2.38e-64 206
MS.gene55873.t1 AT4G29630 48.918 231 97 5 2 222 4 223 4.59e-62 196
MS.gene55873.t1 AT4G29570 42.086 278 142 7 26 292 23 292 1.93e-57 186
MS.gene55873.t1 AT4G29650 38.062 289 127 7 6 292 7 245 6.78e-49 163
MS.gene55873.t1 AT4G29580 39.384 292 152 10 4 282 7 286 3.82e-48 162
MS.gene55873.t1 AT4G29580 39.384 292 152 10 4 282 7 286 4.40e-47 164

Find 112 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGACAGAGAAGTGAAATT+TGG 0.221554 4.3:-3653828 None:intergenic
GACAGCTCCGACGTGGAAAT+TGG 0.275635 4.3:-3653571 None:intergenic
CGGGTGCTCCGCGGATTTCT+TGG 0.278140 4.3:-3653773 None:intergenic
TCCTAGTTTGGGTCCTCTTC+AGG 0.279807 4.3:+3654133 MS.gene55873:CDS
TGAAGATTTGGCCATGGATT+TGG 0.298830 4.3:-3653478 None:intergenic
TGGGTGGTCGGGCGAGGGAT+TGG 0.308461 4.3:-3653545 None:intergenic
AAAGTCTGCAATTGACATTT+AGG 0.308869 4.3:-3654287 None:intergenic
GGAAATGATGATTTGAATAT+CGG 0.323221 4.3:-3653793 None:intergenic
GGGTGGTCGGGCGAGGGATT+GGG 0.334841 4.3:-3653544 None:intergenic
GGCGGCGTTTAATCCTAGTT+TGG 0.341522 4.3:+3654121 MS.gene55873:CDS
CCAGATGGTGAATTACTATA+AGG 0.358174 4.3:-3654044 None:intergenic
GAGAGTGAGGGATGAAGATT+TGG 0.361013 4.3:-3653490 None:intergenic
TCCTCTTCAGGCTGCGGTGG+TGG 0.366749 4.3:+3654145 MS.gene55873:CDS
GCGGCGTTTAATCCTAGTTT+GGG 0.380242 4.3:+3654122 MS.gene55873:CDS
CCTTATAGTAATTCACCATC+TGG 0.384670 4.3:+3654044 MS.gene55873:CDS
GAGACAGAGAAGTGAAATTT+GGG 0.388256 4.3:-3653827 None:intergenic
GGATTTCTTGGAAGAATTGC+CGG 0.395040 4.3:-3653761 None:intergenic
GAATTGCCGGCAGTGGCCAC+AGG 0.404218 4.3:-3653748 None:intergenic
CCGGCAGTGGCCACAGGGAG+CGG 0.421277 4.3:-3653742 None:intergenic
GCGTTTATTGTCGCCGGCGG+CGG 0.423175 4.3:+3654167 MS.gene55873:CDS
GATAGTTTCTCTGTTGTTAA+CGG 0.423842 4.3:-3653942 None:intergenic
GACGGCAAATGAGTGGAGAT+TGG 0.429471 4.3:-3653715 None:intergenic
TGACAAGTGATGGGAGGAGT+TGG 0.430025 4.3:-3653515 None:intergenic
GGAGGAGTTGGGTGAGAGTG+AGG 0.430382 4.3:-3653503 None:intergenic
TTTGGCCATGGATTTGGCTT+CGG 0.430920 4.3:-3653472 None:intergenic
CCATCGGGTCGGATCTTAAT+CGG 0.432605 4.3:+3653603 MS.gene55873:CDS
TGGAGATGGGTGGTCGGGCG+AGG 0.432898 4.3:-3653551 None:intergenic
TCGGGCGAGGGATTGGGCGG+AGG 0.439797 4.3:-3653538 None:intergenic
AGTGAAATTTGGGTCAGATT+CGG 0.443529 4.3:-3653817 None:intergenic
GAAGCTAAAGATTGCGGCTA+TGG 0.452033 4.3:+3653998 MS.gene55873:CDS
GAAATTGGAGATGGGTGGTC+GGG 0.455841 4.3:-3653556 None:intergenic
CCGCTCCCTGTGGCCACTGC+CGG 0.461973 4.3:+3653742 MS.gene55873:CDS
AGTGATGAAGAGGGAGGCCT+GGG 0.468579 4.3:-3653641 None:intergenic
TAAAGGATCTTATGTTGAAT+CGG 0.470270 4.3:+3654100 MS.gene55873:CDS
CTTGGAAGAATTGCCGGCAG+TGG 0.473200 4.3:-3653755 None:intergenic
TGGGCGGAGGTGACAAGTGA+TGG 0.473273 4.3:-3653525 None:intergenic
GACAAGTGATGGGAGGAGTT+GGG 0.474173 4.3:-3653514 None:intergenic
GAGAAACTGTTCGGCGTGGA+TGG 0.474486 4.3:-3653664 None:intergenic
ACGGCAAATGAGTGGAGATT+GGG 0.480319 4.3:-3653714 None:intergenic
GAGTGATGAAGAGGGAGGCC+TGG 0.482748 4.3:-3653642 None:intergenic
ATCACCGTTGCAAACGCCAT+TGG 0.486585 4.3:-3653964 None:intergenic
ACCATCTGGGATGGCGATTG+TGG 0.487559 4.3:+3654058 MS.gene55873:CDS
GCCACAGGGAGCGGCGGAGA+CGG 0.489161 4.3:-3653733 None:intergenic
GGCCATGGATTTGGCTTCGG+TGG 0.493035 4.3:-3653469 None:intergenic
AATTTCCACGTCGGAGCTGT+CGG 0.496820 4.3:+3653573 MS.gene55873:CDS
AAAACAGAGGAGCGTGTTGA+GGG 0.498221 4.3:-3653887 None:intergenic
CCGATTAAGATCCGACCCGA+TGG 0.499542 4.3:-3653603 None:intergenic
CGGAAGAAGCTTTAACCCGT+TGG 0.502023 4.3:-3653922 None:intergenic
GCCACCACCGCAGCCTGAAG+AGG 0.504864 4.3:-3654146 None:intergenic
GGGTCCTCTTCAGGCTGCGG+TGG 0.509491 4.3:+3654142 MS.gene55873:CDS
TGGTCGGGCGAGGGATTGGG+CGG 0.511129 4.3:-3653541 None:intergenic
CGATTAAGATCCGACCCGAT+GGG 0.512765 4.3:-3653602 None:intergenic
GGAGATGGGTGGTCGGGCGA+GGG 0.514417 4.3:-3653550 None:intergenic
ATTTGTGAGGAGAAACTGTT+CGG 0.519896 4.3:-3653673 None:intergenic
GGAAATTGGAGATGGGTGGT+CGG 0.522634 4.3:-3653557 None:intergenic
GAAATGATGATTTGAATATC+GGG 0.533555 4.3:-3653792 None:intergenic
GTCCATTGATCATTCATCAA+AGG 0.535433 4.3:-3654318 None:intergenic
GTGGTGGCGTTTATTGTCGC+CGG 0.545550 4.3:+3654161 MS.gene55873:CDS
TTTGGGTCCTCTTCAGGCTG+CGG 0.545667 4.3:+3654139 MS.gene55873:CDS
TCCGACGTGGAAATTGGAGA+TGG 0.546314 4.3:-3653565 None:intergenic
TCGTGTGGTCCAAATCTGTA+AGG 0.546455 4.3:-3653858 None:intergenic
GAGGGATGAAGATTTGGCCA+TGG 0.547112 4.3:-3653484 None:intergenic
GAGGAGTTGGGTGAGAGTGA+GGG 0.549562 4.3:-3653502 None:intergenic
GAGATTGGGTTCGTCGTGGA+GGG 0.551352 4.3:-3653700 None:intergenic
GGGCGGAGGTGACAAGTGAT+GGG 0.554215 4.3:-3653524 None:intergenic
TGAGATCGTGGGTGCTGTGT+TGG 0.554657 4.3:+3654199 MS.gene55873:CDS
AGCTGTCGGATTATCCCCAT+CGG 0.556466 4.3:+3653587 MS.gene55873:CDS
GCTAAAGATTGCGGCTATGG+AGG 0.558173 4.3:+3654001 MS.gene55873:CDS
ATGGCGATTGTGGATTGTAA+TGG 0.559387 4.3:+3654068 MS.gene55873:CDS
GATCGTGGGTGCTGTGTTGG+TGG 0.562554 4.3:+3654202 MS.gene55873:CDS
AGCTTTAACCCGTTGGTGCG+TGG 0.562632 4.3:-3653915 None:intergenic
GGAGTCAATGTCGAATTCCC+AGG 0.562922 4.3:+3653624 MS.gene55873:CDS
GGAGATTGGGTTCGTCGTGG+AGG 0.563710 4.3:-3653701 None:intergenic
CGGCGGAGACGGCAAATGAG+TGG 0.568502 4.3:-3653722 None:intergenic
CGGTAAGTATGATGAGATCG+TGG 0.575614 4.3:+3654187 MS.gene55873:CDS
CTTATAGTAATTCACCATCT+GGG 0.578783 4.3:+3654045 MS.gene55873:CDS
AGCCACCGAAGCCAAATCCA+TGG 0.582069 4.3:+3653467 MS.gene55873:CDS
CGTGGATGGAGTGATGAAGA+GGG 0.588357 4.3:-3653650 None:intergenic
CTATCCAATGGCGTTTGCAA+CGG 0.589084 4.3:+3653960 MS.gene55873:CDS
GCCTGAAGAGGACCCAAACT+AGG 0.589128 4.3:-3654134 None:intergenic
CTCATCATACTTACCGCCGC+CGG 0.591519 4.3:-3654180 None:intergenic
CCGACGTGGAAATTGGAGAT+GGG 0.591562 4.3:-3653564 None:intergenic
GAAATTTGGGTCAGATTCGG+AGG 0.593025 4.3:-3653814 None:intergenic
TAGTAATTCACCATCTGGGA+TGG 0.593503 4.3:+3654049 MS.gene55873:CDS
GCCGTCTCCGCCGCTCCCTG+TGG 0.593913 4.3:+3653732 MS.gene55873:CDS
GCGTGGATGGAGTGATGAAG+AGG 0.599358 4.3:-3653651 None:intergenic
GCTGTCGGATTATCCCCATC+GGG 0.602496 4.3:+3653588 MS.gene55873:CDS
GCAGTGGCCACAGGGAGCGG+CGG 0.603868 4.3:-3653739 None:intergenic
AATTGCCGGCAGTGGCCACA+GGG 0.607932 4.3:-3653747 None:intergenic
CGGAGGTGACAAGTGATGGG+AGG 0.610703 4.3:-3653521 None:intergenic
TCCACAATCGCCATCCCAGA+TGG 0.613085 4.3:-3654059 None:intergenic
CGGAGCTATGGTGAAACAAG+AGG 0.615878 4.3:+3654232 MS.gene55873:CDS
GGTAAGTATGATGAGATCGT+GGG 0.617309 4.3:+3654188 MS.gene55873:CDS
GATTAAGATCCGACCCGATG+GGG 0.619338 4.3:-3653601 None:intergenic
GGTGGAGAAAGACGGAGCTA+TGG 0.623714 4.3:+3654220 MS.gene55873:CDS
TCGGATTATCCCCATCGGGT+CGG 0.633245 4.3:+3653592 MS.gene55873:CDS
GTGGCGTTTATTGTCGCCGG+CGG 0.634221 4.3:+3654164 MS.gene55873:CDS
GGAGCTATGGTGAAACAAGA+GGG 0.637476 4.3:+3654233 MS.gene55873:CDS
TCATGAGAAGCTAAAGATTG+CGG 0.637485 4.3:+3653992 MS.gene55873:CDS
TTTGAATATCGGGTGCTCCG+CGG 0.650008 4.3:-3653782 None:intergenic
AGTGGAGATTGGGTTCGTCG+TGG 0.655961 4.3:-3653704 None:intergenic
ACGTGGAAATTGGAGATGGG+TGG 0.657179 4.3:-3653561 None:intergenic
ACAACAGAGAAACTATCCAA+TGG 0.665950 4.3:+3653948 MS.gene55873:CDS
AGGATCTTATGTTGAATCGG+CGG 0.667327 4.3:+3654103 MS.gene55873:CDS
CAATTCTTCCAAGAAATCCG+CGG 0.668096 4.3:+3653765 MS.gene55873:CDS
ATAATCCGACAGCTCCGACG+TGG 0.676269 4.3:-3653578 None:intergenic
CCCATCTCCAATTTCCACGT+CGG 0.677245 4.3:+3653564 MS.gene55873:CDS
GCTGTGTTGGTGGAGAAAGA+CGG 0.682938 4.3:+3654212 MS.gene55873:CDS
TGAGGAGAAACTGTTCGGCG+TGG 0.685610 4.3:-3653668 None:intergenic
CGTGGAGGGAGAGATTTGTG+AGG 0.692173 4.3:-3653686 None:intergenic
GGATGGAGTGATGAAGAGGG+AGG 0.695700 4.3:-3653647 None:intergenic
TGTTGAGGGAGAAGATCGTG+TGG 0.703420 4.3:-3653873 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTAATGGAAAAATCTATAA+AGG + chr4.3:3654083-3654102 MS.gene55873:CDS 20.0%
! GAAATGATGATTTGAATATC+GGG - chr4.3:3653795-3653814 None:intergenic 25.0%
! GGAAATGATGATTTGAATAT+CGG - chr4.3:3653796-3653815 None:intergenic 25.0%
! TAAAGGATCTTATGTTGAAT+CGG + chr4.3:3654100-3654119 MS.gene55873:CDS 25.0%
AAAGTCTGCAATTGACATTT+AGG - chr4.3:3654290-3654309 None:intergenic 30.0%
CTTATAGTAATTCACCATCT+GGG + chr4.3:3654045-3654064 MS.gene55873:CDS 30.0%
GATAGTTTCTCTGTTGTTAA+CGG - chr4.3:3653945-3653964 None:intergenic 30.0%
! CATTTTCTTCCTTACAGATT+TGG + chr4.3:3653849-3653868 MS.gene55873:CDS 30.0%
ACAACAGAGAAACTATCCAA+TGG + chr4.3:3653948-3653967 MS.gene55873:CDS 35.0%
AGTGAAATTTGGGTCAGATT+CGG - chr4.3:3653820-3653839 None:intergenic 35.0%
ATTTGTGAGGAGAAACTGTT+CGG - chr4.3:3653676-3653695 None:intergenic 35.0%
CCAGATGGTGAATTACTATA+AGG - chr4.3:3654047-3654066 None:intergenic 35.0%
CCTTATAGTAATTCACCATC+TGG + chr4.3:3654044-3654063 MS.gene55873:CDS 35.0%
GAGACAGAGAAGTGAAATTT+GGG - chr4.3:3653830-3653849 None:intergenic 35.0%
TCATGAGAAGCTAAAGATTG+CGG + chr4.3:3653992-3654011 MS.gene55873:CDS 35.0%
TGAGACAGAGAAGTGAAATT+TGG - chr4.3:3653831-3653850 None:intergenic 35.0%
AGGATCTTATGTTGAATCGG+CGG + chr4.3:3654103-3654122 MS.gene55873:CDS 40.0%
CAATTCTTCCAAGAAATCCG+CGG + chr4.3:3653765-3653784 MS.gene55873:CDS 40.0%
GGATTTCTTGGAAGAATTGC+CGG - chr4.3:3653764-3653783 None:intergenic 40.0%
GGTAAGTATGATGAGATCGT+GGG + chr4.3:3654188-3654207 MS.gene55873:CDS 40.0%
GGTGGCTTCGATAACAAAAA+CGG - chr4.3:3653454-3653473 None:intergenic 40.0%
GTGGCTTCGATAACAAAAAC+GGG - chr4.3:3653453-3653472 None:intergenic 40.0%
TAGTAATTCACCATCTGGGA+TGG + chr4.3:3654049-3654068 MS.gene55873:CDS 40.0%
TGAAGATTTGGCCATGGATT+TGG - chr4.3:3653481-3653500 None:intergenic 40.0%
! ATGGCGATTGTGGATTGTAA+TGG + chr4.3:3654068-3654087 MS.gene55873:CDS 40.0%
ACGGCAAATGAGTGGAGATT+GGG - chr4.3:3653717-3653736 None:intergenic 45.0%
CGGTAAGTATGATGAGATCG+TGG + chr4.3:3654187-3654206 MS.gene55873:CDS 45.0%
CTATCCAATGGCGTTTGCAA+CGG + chr4.3:3653960-3653979 MS.gene55873:CDS 45.0%
GAAATTTGGGTCAGATTCGG+AGG - chr4.3:3653817-3653836 None:intergenic 45.0%
GAAGCTAAAGATTGCGGCTA+TGG + chr4.3:3653998-3654017 MS.gene55873:CDS 45.0%
GAGAGTGAGGGATGAAGATT+TGG - chr4.3:3653493-3653512 None:intergenic 45.0%
GCGGCGTTTAATCCTAGTTT+GGG + chr4.3:3654122-3654141 MS.gene55873:CDS 45.0%
GGAGCTATGGTGAAACAAGA+GGG + chr4.3:3654233-3654252 MS.gene55873:CDS 45.0%
TCGTGTGGTCCAAATCTGTA+AGG - chr4.3:3653861-3653880 None:intergenic 45.0%
! AAAAACAGAGGAGCGTGTTG+AGG - chr4.3:3653891-3653910 None:intergenic 45.0%
! AAAACAGAGGAGCGTGTTGA+GGG - chr4.3:3653890-3653909 None:intergenic 45.0%
! TCAACACGCTCCTCTGTTTT+TGG + chr4.3:3653890-3653909 MS.gene55873:CDS 45.0%
! TTTGGCCATGGATTTGGCTT+CGG - chr4.3:3653475-3653494 None:intergenic 45.0%
!!! TTTTTGGAACCACGCACCAA+CGG + chr4.3:3653906-3653925 MS.gene55873:CDS 45.0%
AATTTCCACGTCGGAGCTGT+CGG + chr4.3:3653573-3653592 MS.gene55873:CDS 50.0%
ACGTGGAAATTGGAGATGGG+TGG - chr4.3:3653564-3653583 None:intergenic 50.0%
AGCTGTCGGATTATCCCCAT+CGG + chr4.3:3653587-3653606 MS.gene55873:CDS 50.0%
ATCACCGTTGCAAACGCCAT+TGG - chr4.3:3653967-3653986 None:intergenic 50.0%
CCATCGGGTCGGATCTTAAT+CGG + chr4.3:3653603-3653622 MS.gene55873:CDS 50.0%
CCCATCTCCAATTTCCACGT+CGG + chr4.3:3653564-3653583 MS.gene55873:CDS 50.0%
CCGACGTGGAAATTGGAGAT+GGG - chr4.3:3653567-3653586 None:intergenic 50.0%
CGATTAAGATCCGACCCGAT+GGG - chr4.3:3653605-3653624 None:intergenic 50.0%
CGGAGCTATGGTGAAACAAG+AGG + chr4.3:3654232-3654251 MS.gene55873:CDS 50.0%
CGTGGATGGAGTGATGAAGA+GGG - chr4.3:3653653-3653672 None:intergenic 50.0%
GAAATTGGAGATGGGTGGTC+GGG - chr4.3:3653559-3653578 None:intergenic 50.0%
GACGGCAAATGAGTGGAGAT+TGG - chr4.3:3653718-3653737 None:intergenic 50.0%
GAGGGATGAAGATTTGGCCA+TGG - chr4.3:3653487-3653506 None:intergenic 50.0%
GATTAAGATCCGACCCGATG+GGG - chr4.3:3653604-3653623 None:intergenic 50.0%
GCTAAAGATTGCGGCTATGG+AGG + chr4.3:3654001-3654020 MS.gene55873:CDS 50.0%
GGAAATTGGAGATGGGTGGT+CGG - chr4.3:3653560-3653579 None:intergenic 50.0%
GGAGTCAATGTCGAATTCCC+AGG + chr4.3:3653624-3653643 MS.gene55873:CDS 50.0%
GGCGGCGTTTAATCCTAGTT+TGG + chr4.3:3654121-3654140 MS.gene55873:CDS 50.0%
GTGCGTGGTTCCAAAAACAG+AGG - chr4.3:3653903-3653922 None:intergenic 50.0%
TCCGACGTGGAAATTGGAGA+TGG - chr4.3:3653568-3653587 None:intergenic 50.0%
TCCTAGTTTGGGTCCTCTTC+AGG + chr4.3:3654133-3654152 MS.gene55873:CDS 50.0%
TGTTGAGGGAGAAGATCGTG+TGG - chr4.3:3653876-3653895 None:intergenic 50.0%
TTTGAATATCGGGTGCTCCG+CGG - chr4.3:3653785-3653804 None:intergenic 50.0%
! CGGAAGAAGCTTTAACCCGT+TGG - chr4.3:3653925-3653944 None:intergenic 50.0%
! GACAAGTGATGGGAGGAGTT+GGG - chr4.3:3653517-3653536 None:intergenic 50.0%
! GCTGTGTTGGTGGAGAAAGA+CGG + chr4.3:3654212-3654231 MS.gene55873:CDS 50.0%
! TGACAAGTGATGGGAGGAGT+TGG - chr4.3:3653518-3653537 None:intergenic 50.0%
!!! TTTTGGAACCACGCACCAAC+GGG + chr4.3:3653907-3653926 MS.gene55873:CDS 50.0%
AGCCACCGAAGCCAAATCCA+TGG + chr4.3:3653467-3653486 MS.gene55873:CDS 55.0%
AGTGATGAAGAGGGAGGCCT+GGG - chr4.3:3653644-3653663 None:intergenic 55.0%
AGTGGAGATTGGGTTCGTCG+TGG - chr4.3:3653707-3653726 None:intergenic 55.0%
ATAATCCGACAGCTCCGACG+TGG - chr4.3:3653581-3653600 None:intergenic 55.0%
CCGATTAAGATCCGACCCGA+TGG - chr4.3:3653606-3653625 None:intergenic 55.0%
CGTGGAGGGAGAGATTTGTG+AGG - chr4.3:3653689-3653708 None:intergenic 55.0%
CTCATCATACTTACCGCCGC+CGG - chr4.3:3654183-3654202 None:intergenic 55.0%
CTTGGAAGAATTGCCGGCAG+TGG - chr4.3:3653758-3653777 None:intergenic 55.0%
GACAGCTCCGACGTGGAAAT+TGG - chr4.3:3653574-3653593 None:intergenic 55.0%
GAGAAACTGTTCGGCGTGGA+TGG - chr4.3:3653667-3653686 None:intergenic 55.0%
GAGATTGGGTTCGTCGTGGA+GGG - chr4.3:3653703-3653722 None:intergenic 55.0%
GAGGAGTTGGGTGAGAGTGA+GGG - chr4.3:3653505-3653524 None:intergenic 55.0%
GCCTGAAGAGGACCCAAACT+AGG - chr4.3:3654137-3654156 None:intergenic 55.0%
GCGTGGATGGAGTGATGAAG+AGG - chr4.3:3653654-3653673 None:intergenic 55.0%
GCTGTCGGATTATCCCCATC+GGG + chr4.3:3653588-3653607 MS.gene55873:CDS 55.0%
GGATGGAGTGATGAAGAGGG+AGG - chr4.3:3653650-3653669 None:intergenic 55.0%
GGTGGAGAAAGACGGAGCTA+TGG + chr4.3:3654220-3654239 MS.gene55873:CDS 55.0%
TCCACAATCGCCATCCCAGA+TGG - chr4.3:3654062-3654081 None:intergenic 55.0%
TCGGATTATCCCCATCGGGT+CGG + chr4.3:3653592-3653611 MS.gene55873:CDS 55.0%
TGAGGAGAAACTGTTCGGCG+TGG - chr4.3:3653671-3653690 None:intergenic 55.0%
TTTGGGTCCTCTTCAGGCTG+CGG + chr4.3:3654139-3654158 MS.gene55873:CDS 55.0%
! ACCATCTGGGATGGCGATTG+TGG + chr4.3:3654058-3654077 MS.gene55873:CDS 55.0%
! AGCTTTAACCCGTTGGTGCG+TGG - chr4.3:3653918-3653937 None:intergenic 55.0%
! GTGGTGGCGTTTATTGTCGC+CGG + chr4.3:3654161-3654180 MS.gene55873:CDS 55.0%
! TGAGATCGTGGGTGCTGTGT+TGG + chr4.3:3654199-3654218 MS.gene55873:CDS 55.0%
AATTGCCGGCAGTGGCCACA+GGG - chr4.3:3653750-3653769 None:intergenic 60.0%
GAGTGATGAAGAGGGAGGCC+TGG - chr4.3:3653645-3653664 None:intergenic 60.0%
GGAGATTGGGTTCGTCGTGG+AGG - chr4.3:3653704-3653723 None:intergenic 60.0%
GGAGGAGTTGGGTGAGAGTG+AGG - chr4.3:3653506-3653525 None:intergenic 60.0%
GGGCGGAGGTGACAAGTGAT+GGG - chr4.3:3653527-3653546 None:intergenic 60.0%
GTGGCGTTTATTGTCGCCGG+CGG + chr4.3:3654164-3654183 MS.gene55873:CDS 60.0%
TGGGCGGAGGTGACAAGTGA+TGG - chr4.3:3653528-3653547 None:intergenic 60.0%
! CGGAGGTGACAAGTGATGGG+AGG - chr4.3:3653524-3653543 None:intergenic 60.0%
! GATCGTGGGTGCTGTGTTGG+TGG + chr4.3:3654202-3654221 MS.gene55873:CDS 60.0%
! GGCCATGGATTTGGCTTCGG+TGG - chr4.3:3653472-3653491 None:intergenic 60.0%
CGGCGGAGACGGCAAATGAG+TGG - chr4.3:3653725-3653744 None:intergenic 65.0%
CGGGTGCTCCGCGGATTTCT+TGG - chr4.3:3653776-3653795 None:intergenic 65.0%
GAATTGCCGGCAGTGGCCAC+AGG - chr4.3:3653751-3653770 None:intergenic 65.0%
GCGTTTATTGTCGCCGGCGG+CGG + chr4.3:3654167-3654186 MS.gene55873:CDS 65.0%
TCCTCTTCAGGCTGCGGTGG+TGG + chr4.3:3654145-3654164 MS.gene55873:CDS 65.0%
GCCACCACCGCAGCCTGAAG+AGG - chr4.3:3654149-3654168 None:intergenic 70.0%
GGAGATGGGTGGTCGGGCGA+GGG - chr4.3:3653553-3653572 None:intergenic 70.0%
GGGTCCTCTTCAGGCTGCGG+TGG + chr4.3:3654142-3654161 MS.gene55873:CDS 70.0%
GGGTGGTCGGGCGAGGGATT+GGG - chr4.3:3653547-3653566 None:intergenic 70.0%
TGGAGATGGGTGGTCGGGCG+AGG - chr4.3:3653554-3653573 None:intergenic 70.0%
TGGGTGGTCGGGCGAGGGAT+TGG - chr4.3:3653548-3653567 None:intergenic 70.0%
TGGTCGGGCGAGGGATTGGG+CGG - chr4.3:3653544-3653563 None:intergenic 70.0%
CCGCTCCCTGTGGCCACTGC+CGG + chr4.3:3653742-3653761 MS.gene55873:CDS 75.0%
CCGGCAGTGGCCACAGGGAG+CGG - chr4.3:3653745-3653764 None:intergenic 75.0%
GCAGTGGCCACAGGGAGCGG+CGG - chr4.3:3653742-3653761 None:intergenic 75.0%
GCCACAGGGAGCGGCGGAGA+CGG - chr4.3:3653736-3653755 None:intergenic 75.0%
TCGGGCGAGGGATTGGGCGG+AGG - chr4.3:3653541-3653560 None:intergenic 75.0%
! GCCGTCTCCGCCGCTCCCTG+TGG + chr4.3:3653732-3653751 MS.gene55873:CDS 80.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 3653441 3654331 3653441 ID=MS.gene55873
chr4.3 mRNA 3653441 3654331 3653441 ID=MS.gene55873.t1;Parent=MS.gene55873
chr4.3 exon 3653441 3654331 3653441 ID=MS.gene55873.t1.exon1;Parent=MS.gene55873.t1
chr4.3 CDS 3653441 3654331 3653441 ID=cds.MS.gene55873.t1;Parent=MS.gene55873.t1
Gene Sequence

>MS.gene55873

ATGGATCGACCCGTTTTTGTTATCGAAGCCACCGAAGCCAAATCCATGGCCAAATCTTCATCCCTCACTCTCACCCAACTCCTCCCATCACTTGTCACCTCCGCCCAATCCCTCGCCCGACCACCCATCTCCAATTTCCACGTCGGAGCTGTCGGATTATCCCCATCGGGTCGGATCTTAATCGGAGTCAATGTCGAATTCCCAGGCCTCCCTCTTCATCACTCCATCCACGCCGAACAGTTTCTCCTCACAAATCTCTCCCTCCACGACGAACCCAATCTCCACTCATTTGCCGTCTCCGCCGCTCCCTGTGGCCACTGCCGGCAATTCTTCCAAGAAATCCGCGGAGCACCCGATATTCAAATCATCATTTCCTCCGAATCTGACCCAAATTTCACTTCTCTGTCTCATTTTCTTCCTTACAGATTTGGACCACACGATCTTCTCCCTCAACACGCTCCTCTGTTTTTGGAACCACGCACCAACGGGTTAAAGCTTCTTCCGTTAACAACAGAGAAACTATCCAATGGCGTTTGCAACGGTGATTCGCTTCATGAGAAGCTAAAGATTGCGGCTATGGAGGCTGCGAATAAATCGCATGCTCCTTATAGTAATTCACCATCTGGGATGGCGATTGTGGATTGTAATGGAAAAATCTATAAAGGATCTTATGTTGAATCGGCGGCGTTTAATCCTAGTTTGGGTCCTCTTCAGGCTGCGGTGGTGGCGTTTATTGTCGCCGGCGGCGGTAAGTATGATGAGATCGTGGGTGCTGTGTTGGTGGAGAAAGACGGAGCTATGGTGAAACAAGAGGGCACTGTTAAATTGTTGCTTGAAACTATTTCTCCTAAATGTCAATTGCAGACTTTACTCTGTTCCTTTGATGAATGA
Protein sequence

>MS.gene55873.t1

MDRPVFVIEATEAKSMAKSSSLTLTQLLPSLVTSAQSLARPPISNFHVGAVGLSPSGRILIGVNVEFPGLPLHHSIHAEQFLLTNLSLHDEPNLHSFAVSAAPCGHCRQFFQEIRGAPDIQIIISSESDPNFTSLSHFLPYRFGPHDLLPQHAPLFLEPRTNGLKLLPLTTEKLSNGVCNGDSLHEKLKIAAMEAANKSHAPYSNSPSGMAIVDCNGKIYKGSYVESAAFNPSLGPLQAAVVAFIVAGGGKYDEIVGAVLVEKDGAMVKQEGTVKLLLETISPKCQLQTLLCSFDE