Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene049129.t1 | RHN43692.1 | 96 | 75 | 3 | 0 | 1 | 75 | 1 | 75 | 2.20E-33 | 151.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene049129.t1 | Q56YU0 | 67.9 | 78 | 20 | 1 | 2 | 74 | 3 | 80 | 1.0e-23 | 110.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene049129.t1 | G7LH64 | 96.0 | 75 | 3 | 0 | 1 | 75 | 1 | 75 | 1.6e-33 | 151.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049129 | MS.gene049411 | -0.837393 | 5.34E-57 | -1.69E-46 |
MS.gene049129 | MS.gene050752 | -0.811866 | 5.65E-51 | -1.69E-46 |
MS.gene049129 | MS.gene051234 | -0.806665 | 7.37E-50 | -1.69E-46 |
MS.gene049129 | MS.gene051902 | -0.805947 | 1.04E-49 | -1.69E-46 |
MS.gene049129 | MS.gene054004 | -0.800513 | 1.39E-48 | -1.69E-46 |
MS.gene049129 | MS.gene054403 | -0.815073 | 1.11E-51 | -1.69E-46 |
MS.gene049129 | MS.gene057705 | -0.82036 | 7.15E-53 | -1.69E-46 |
MS.gene049129 | MS.gene05781 | -0.821447 | 4.02E-53 | -1.69E-46 |
MS.gene049129 | MS.gene059146 | -0.807784 | 4.27E-50 | -1.69E-46 |
MS.gene049129 | MS.gene05924 | 0.909826 | 3.71E-82 | -1.69E-46 |
MS.gene049129 | MS.gene060763 | -0.809639 | 1.71E-50 | -1.69E-46 |
MS.gene049129 | MS.gene061878 | -0.80285 | 4.61E-49 | -1.69E-46 |
MS.gene049129 | MS.gene063026 | -0.843227 | 1.60E-58 | -1.69E-46 |
MS.gene049129 | MS.gene065072 | -0.8008 | 1.22E-48 | -1.69E-46 |
MS.gene049129 | MS.gene067571 | -0.821069 | 4.91E-53 | -1.69E-46 |
MS.gene049129 | MS.gene067697 | -0.813833 | 2.10E-51 | -1.69E-46 |
MS.gene049129 | MS.gene068166 | -0.829504 | 4.96E-55 | -1.69E-46 |
MS.gene049129 | MS.gene069310 | -0.824327 | 8.57E-54 | -1.69E-46 |
MS.gene049129 | MS.gene069828 | -0.837034 | 6.59E-57 | -1.69E-46 |
MS.gene049129 | MS.gene06984 | -0.86234 | 5.43E-64 | -1.69E-46 |
MS.gene049129 | MS.gene07100 | -0.845105 | 5.00E-59 | -1.69E-46 |
MS.gene049129 | MS.gene071958 | -0.811611 | 6.42E-51 | -1.69E-46 |
MS.gene049129 | MS.gene07222 | -0.811963 | 5.38E-51 | -1.69E-46 |
MS.gene049129 | MS.gene073207 | -0.841737 | 3.96E-58 | -1.69E-46 |
MS.gene049129 | MS.gene073232 | -0.820856 | 5.50E-53 | -1.69E-46 |
MS.gene049129 | MS.gene073674 | -0.868812 | 4.94E-66 | -1.69E-46 |
MS.gene049129 | MS.gene08793 | -0.816608 | 5.07E-52 | -1.69E-46 |
MS.gene049129 | MS.gene20740 | -0.813223 | 2.85E-51 | -1.69E-46 |
MS.gene049129 | MS.gene20997 | -0.802032 | 6.80E-49 | -1.69E-46 |
MS.gene049129 | MS.gene22218 | -0.838388 | 2.96E-57 | -1.69E-46 |
MS.gene049129 | MS.gene22321 | -0.800826 | 1.20E-48 | -1.69E-46 |
MS.gene049129 | MS.gene24930 | -0.809419 | 1.91E-50 | -1.69E-46 |
MS.gene049129 | MS.gene25901 | -0.804074 | 2.57E-49 | -1.69E-46 |
MS.gene049129 | MS.gene33384 | -0.803127 | 4.04E-49 | -1.69E-46 |
MS.gene049129 | MS.gene33879 | -0.805129 | 1.55E-49 | -1.69E-46 |
MS.gene049129 | MS.gene35499 | -0.819388 | 1.19E-52 | -1.69E-46 |
MS.gene049129 | MS.gene44141 | -0.802851 | 4.61E-49 | -1.69E-46 |
MS.gene049129 | MS.gene44240 | -0.831091 | 2.03E-55 | -1.69E-46 |
MS.gene049129 | MS.gene48661 | -0.805949 | 1.04E-49 | -1.69E-46 |
MS.gene049129 | MS.gene52404 | -0.809779 | 1.60E-50 | -1.69E-46 |
MS.gene049129 | MS.gene52837 | -0.807327 | 5.34E-50 | -1.69E-46 |
MS.gene049129 | MS.gene55094 | -0.804442 | 2.16E-49 | -1.69E-46 |
MS.gene049129 | MS.gene55873 | 0.824514 | 7.75E-54 | -1.69E-46 |
MS.gene049129 | MS.gene56436 | -0.82223 | 2.65E-53 | -1.69E-46 |
MS.gene049129 | MS.gene56451 | -0.815526 | 8.84E-52 | -1.69E-46 |
MS.gene049129 | MS.gene56656 | -0.808675 | 2.76E-50 | -1.69E-46 |
MS.gene049129 | MS.gene58098 | -0.80333 | 3.67E-49 | -1.69E-46 |
MS.gene049129 | MS.gene58719 | -0.815943 | 7.13E-52 | -1.69E-46 |
MS.gene049129 | MS.gene59505 | -0.843912 | 1.05E-58 | -1.69E-46 |
MS.gene049129 | MS.gene60216 | -0.820218 | 7.71E-53 | -1.69E-46 |
MS.gene049129 | MS.gene62834 | -0.857442 | 1.63E-62 | -1.69E-46 |
MS.gene049129 | MS.gene63726 | -0.832325 | 1.01E-55 | -1.69E-46 |
MS.gene049129 | MS.gene64806 | -0.845966 | 2.92E-59 | -1.69E-46 |
MS.gene049129 | MS.gene66534 | -0.801853 | 7.40E-49 | -1.69E-46 |
MS.gene049129 | MS.gene67485 | -0.82837 | 9.34E-55 | -1.69E-46 |
MS.gene049129 | MS.gene68215 | -0.836607 | 8.47E-57 | -1.69E-46 |
MS.gene049129 | MS.gene68216 | -0.813555 | 2.41E-51 | -1.69E-46 |
MS.gene049129 | MS.gene69820 | -0.82306 | 1.70E-53 | -1.69E-46 |
MS.gene049129 | MS.gene70577 | -0.814923 | 1.20E-51 | -1.69E-46 |
MS.gene049129 | MS.gene72285 | -0.847285 | 1.27E-59 | -1.69E-46 |
MS.gene049129 | MS.gene72413 | -0.834956 | 2.22E-56 | -1.69E-46 |
MS.gene049129 | MS.gene75148 | -0.814942 | 1.19E-51 | -1.69E-46 |
MS.gene049129 | MS.gene76248 | -0.810782 | 9.71E-51 | -1.69E-46 |
MS.gene049129 | MS.gene78232 | -0.857046 | 2.13E-62 | -1.69E-46 |
MS.gene049129 | MS.gene82421 | -0.818758 | 1.66E-52 | -1.69E-46 |
MS.gene049129 | MS.gene83326 | -0.805273 | 1.45E-49 | -1.69E-46 |
MS.gene049129 | MS.gene85610 | -0.81138 | 7.21E-51 | -1.69E-46 |
MS.gene049129 | MS.gene87292 | -0.821167 | 4.66E-53 | -1.69E-46 |
MS.gene049129 | MS.gene90981 | -0.812028 | 5.21E-51 | -1.69E-46 |
MS.gene049129 | MS.gene91203 | -0.836626 | 8.38E-57 | -1.69E-46 |
MS.gene049129 | MS.gene92052 | -0.805047 | 1.61E-49 | -1.69E-46 |
MS.gene049129 | MS.gene95728 | -0.812817 | 3.50E-51 | -1.69E-46 |
MS.gene049129 | MS.gene96814 | 0.806251 | 9.01E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene049129.t1 | MTR_8g083520 | 96.000 | 75 | 3 | 0 | 1 | 75 | 1 | 75 | 6.03e-45 | 150 |
MS.gene049129.t1 | MTR_6g086300 | 82.609 | 69 | 12 | 0 | 9 | 77 | 17 | 85 | 1.66e-33 | 120 |
MS.gene049129.t1 | MTR_6g086300 | 82.609 | 69 | 12 | 0 | 9 | 77 | 17 | 85 | 1.66e-33 | 120 |
MS.gene049129.t1 | MTR_8g083530 | 81.818 | 66 | 12 | 0 | 9 | 74 | 18 | 83 | 3.56e-33 | 117 |
MS.gene049129.t1 | MTR_8g083530 | 81.818 | 66 | 12 | 0 | 9 | 74 | 18 | 83 | 1.48e-32 | 118 |
MS.gene049129.t1 | MTR_6g086340 | 69.620 | 79 | 19 | 1 | 2 | 75 | 3 | 81 | 2.74e-31 | 114 |
MS.gene049129.t1 | MTR_8g064170 | 59.155 | 71 | 29 | 0 | 4 | 74 | 51 | 121 | 9.67e-24 | 94.0 |
MS.gene049129.t1 | MTR_8g064170 | 60.000 | 70 | 28 | 0 | 4 | 73 | 51 | 120 | 1.18e-23 | 93.6 |
MS.gene049129.t1 | MTR_4g107040 | 61.905 | 63 | 24 | 0 | 10 | 72 | 60 | 122 | 8.51e-22 | 88.2 |
MS.gene049129.t1 | MTR_3g078170 | 61.290 | 62 | 24 | 0 | 11 | 72 | 59 | 120 | 2.98e-21 | 86.7 |
MS.gene049129.t1 | MTR_3g078170 | 61.290 | 62 | 24 | 0 | 11 | 72 | 59 | 120 | 3.21e-21 | 86.3 |
MS.gene049129.t1 | MTR_3g078170 | 61.290 | 62 | 24 | 0 | 11 | 72 | 59 | 120 | 3.69e-21 | 86.3 |
MS.gene049129.t1 | MTR_3g078170 | 61.290 | 62 | 24 | 0 | 11 | 72 | 59 | 120 | 4.43e-21 | 86.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene049129.t1 | AT3G24503 | 67.949 | 78 | 20 | 1 | 2 | 74 | 3 | 80 | 5.69e-30 | 110 |
MS.gene049129.t1 | AT3G48000 | 61.765 | 68 | 26 | 0 | 5 | 72 | 49 | 116 | 2.74e-23 | 92.4 |
MS.gene049129.t1 | AT1G23800 | 62.903 | 62 | 23 | 0 | 11 | 72 | 51 | 112 | 7.92e-22 | 87.8 |
MS.gene049129.t1 | AT1G23800 | 62.903 | 62 | 23 | 0 | 11 | 72 | 51 | 112 | 1.53e-21 | 87.4 |
Find 25 sgRNAs with CRISPR-Local
Find 73 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGGTGGGTTCGCCATTAAC+TGG | 0.183711 | 4.1:+2644787 | None:intergenic |
GCTATAACCTCTCCTGTTCT+TGG | 0.187395 | 4.1:+2643986 | None:intergenic |
AGCAACATCAATGTCTTCTT+TGG | 0.289041 | 4.1:+2643946 | None:intergenic |
AAGATGAATGGCCCAGTTAA+TGG | 0.318772 | 4.1:-2644799 | MS.gene049129:CDS |
GGTCCTTGGCCCCGCCTGCC+CGG | 0.394609 | 4.1:-2643893 | MS.gene049129:CDS |
ATGCATTTGACTTTGGTCCT+TGG | 0.433170 | 4.1:-2643907 | MS.gene049129:CDS |
GCACCGGGCAGGCGGGGCCA+AGG | 0.457014 | 4.1:+2643890 | None:intergenic |
AGACATTGATGTTGCTGTAA+AGG | 0.460480 | 4.1:-2643939 | MS.gene049129:CDS |
GCACGTAATGCATTTGACTT+TGG | 0.466490 | 4.1:-2643914 | MS.gene049129:CDS |
ACATACAGCACCGGGCAGGC+GGG | 0.489116 | 4.1:+2643883 | None:intergenic |
GAAACAATAGATCCAAGAAC+AGG | 0.490822 | 4.1:-2643998 | MS.gene049129:CDS |
AACATACAGCACCGGGCAGG+CGG | 0.509641 | 4.1:+2643882 | None:intergenic |
ATCTCCATCGATGAAAAGCT+TGG | 0.513198 | 4.1:+2644756 | None:intergenic |
GAAAAGCTTGGTGAACTTGA+TGG | 0.514257 | 4.1:+2644768 | None:intergenic |
CATACAGCACCGGGCAGGCG+GGG | 0.524560 | 4.1:+2643884 | None:intergenic |
CCACCAAACACAAAGATGAA+TGG | 0.534881 | 4.1:-2644811 | None:intergenic |
TGGTGGGTTCGCCATTAACT+GGG | 0.536645 | 4.1:+2644788 | None:intergenic |
TCAAAAGAAGCAAATATATG+TGG | 0.571588 | 4.1:+2643495 | None:intergenic |
AATAACATACAGCACCGGGC+AGG | 0.596275 | 4.1:+2643879 | None:intergenic |
GTTATAGCAAGGATTAGCGA+AGG | 0.605769 | 4.1:-2643971 | MS.gene049129:CDS |
AGCTTGGTGAACTTGATGGT+GGG | 0.613775 | 4.1:+2644772 | None:intergenic |
CCTCCTCATAGTCTAGAGGA+AGG | 0.634098 | 4.1:+2643454 | None:intergenic |
AAGCTTGGTGAACTTGATGG+TGG | 0.643041 | 4.1:+2644771 | None:intergenic |
GAACAGGAGAGGTTATAGCA+AGG | 0.648276 | 4.1:-2643982 | MS.gene049129:CDS |
AATAGATCCAAGAACAGGAG+AGG | 0.651958 | 4.1:-2643993 | MS.gene049129:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAAATAATAATAACATGA+TGG | + | chr4.1:2643807-2643826 | None:intergenic | 10.0% |
!! | ACAAAAACATAAAACTATAT+TGG | - | chr4.1:2644508-2644527 | MS.gene049129:intron | 15.0% |
!! | ATATCAAAATATAAAAAGAG+AGG | + | chr4.1:2644416-2644435 | None:intergenic | 15.0% |
!! | CAAAAAAGAAAAATTAGATA+TGG | - | chr4.1:2643880-2643899 | MS.gene049129:intron | 15.0% |
!! | TTGTAAAAAAAAAAACATGA+TGG | + | chr4.1:2643777-2643796 | None:intergenic | 15.0% |
!!! | ATAGTTTTATGTTTTTGTTT+TGG | + | chr4.1:2644506-2644525 | None:intergenic | 15.0% |
!!! | TATGTCAATTTTTAATTTCT+TGG | - | chr4.1:2643923-2643942 | MS.gene049129:CDS | 15.0% |
!! | AAAATAATTCAGAATTCAAC+GGG | + | chr4.1:2644138-2644157 | None:intergenic | 20.0% |
!! | CAAAATAATTCAGAATTCAA+CGG | + | chr4.1:2644139-2644158 | None:intergenic | 20.0% |
!! | CTTTCAATGTCAAATATAAA+GGG | - | chr4.1:2644677-2644696 | MS.gene049129:intron | 20.0% |
!! | TCTTTCAATGTCAAATATAA+AGG | - | chr4.1:2644676-2644695 | MS.gene049129:intron | 20.0% |
!! | TTTGACATATTAACAACAAA+AGG | - | chr4.1:2643983-2644002 | MS.gene049129:CDS | 20.0% |
!!! | AAAAGTGTGAACAAAATAAA+TGG | + | chr4.1:2643574-2643593 | None:intergenic | 20.0% |
!!! | ATTATTTTAGACAAGAAAGT+TGG | - | chr4.1:2644443-2644462 | MS.gene049129:intron | 20.0% |
!!! | TATTATTACCATATTTGTTG+AGG | + | chr4.1:2643728-2643747 | None:intergenic | 20.0% |
!!! | TTTTAATTTCTTGGTATTTG+CGG | - | chr4.1:2643932-2643951 | MS.gene049129:CDS | 20.0% |
! | ACATTGAAAGATTTGTATAG+AGG | + | chr4.1:2644667-2644686 | None:intergenic | 25.0% |
! | CAAAATATAAAAAGAGAGGA+AGG | + | chr4.1:2644412-2644431 | None:intergenic | 25.0% |
! | GAAAATTACAGAAAAAGAGA+AGG | + | chr4.1:2643629-2643648 | None:intergenic | 25.0% |
! | GAAAGATGTGATTAAGTTTA+AGG | + | chr4.1:2644729-2644748 | None:intergenic | 25.0% |
! | TCAAAAGAAGCAAATATATG+TGG | + | chr4.1:2644770-2644789 | None:intergenic | 25.0% |
! | TGCATAATATATGTAAAGTC+CGG | - | chr4.1:2644582-2644601 | MS.gene049129:intron | 25.0% |
! | TTAATCACATCTTTCTTTAC+AGG | - | chr4.1:2644734-2644753 | MS.gene049129:intron | 25.0% |
!! | TTTAATTTCTTGGTATTTGC+GGG | - | chr4.1:2643933-2643952 | MS.gene049129:CDS | 25.0% |
!!! | TCGTGATTTTTTTCTTTTTG+TGG | + | chr4.1:2644625-2644644 | None:intergenic | 25.0% |
!!! | TGATTTTTTTCTTTTTGTGG+TGG | + | chr4.1:2644622-2644641 | None:intergenic | 25.0% |
AATAGTTGCCTCAACAAATA+TGG | - | chr4.1:2643717-2643736 | MS.gene049129:intron | 30.0% | |
CATAATATATGTAAAGTCCG+GGG | - | chr4.1:2644584-2644603 | MS.gene049129:intron | 30.0% | |
GCATAATATATGTAAAGTCC+GGG | - | chr4.1:2644583-2644602 | MS.gene049129:intron | 30.0% | |
TCATAATGAGAATCTTAAGC+AGG | - | chr4.1:2644471-2644490 | MS.gene049129:intron | 30.0% | |
! | GATGTGATTAAGTTTAAGGT+TGG | + | chr4.1:2644725-2644744 | None:intergenic | 30.0% |
! | GTTACTTTGTTTGAGAAAAC+AGG | - | chr4.1:2644231-2644250 | MS.gene049129:intron | 30.0% |
!!! | TATTTTGACGCTTTTCTCAT+AGG | - | chr4.1:2644152-2644171 | MS.gene049129:intron | 30.0% |
AGACATTGATGTTGCTGTAA+AGG | - | chr4.1:2644323-2644342 | MS.gene049129:intron | 35.0% | |
AGCAACATCAATGTCTTCTT+TGG | + | chr4.1:2644319-2644338 | None:intergenic | 35.0% | |
ATAATTCAGAATTCAACGGG+AGG | + | chr4.1:2644135-2644154 | None:intergenic | 35.0% | |
GAAAAATAACATACAGCACC+GGG | + | chr4.1:2644390-2644409 | None:intergenic | 35.0% | |
GAAACAATAGATCCAAGAAC+AGG | - | chr4.1:2644264-2644283 | MS.gene049129:intron | 35.0% | |
GGAAAAATAACATACAGCAC+CGG | + | chr4.1:2644391-2644410 | None:intergenic | 35.0% | |
! | CTTTTCTCATAGGAGTCAAA+GGG | - | chr4.1:2644162-2644181 | MS.gene049129:intron | 35.0% |
! | TTTCATCGATGGAGATTTTG+TGG | - | chr4.1:2643513-2643532 | MS.gene049129:intron | 35.0% |
!!! | TTTTTTCTTTTTGTGGTGGC+CGG | + | chr4.1:2644618-2644637 | None:intergenic | 35.0% |
AATAGATCCAAGAACAGGAG+AGG | - | chr4.1:2644269-2644288 | MS.gene049129:intron | 40.0% | |
AATTTCTTGGTATTTGCGGG+AGG | - | chr4.1:2643936-2643955 | MS.gene049129:CDS | 40.0% | |
ATCTCCATCGATGAAAAGCT+TGG | + | chr4.1:2643509-2643528 | None:intergenic | 40.0% | |
! | ATAAAGGGTGTGCATGTACT+TGG | - | chr4.1:2644692-2644711 | MS.gene049129:intron | 40.0% |
! | ATGCATTTGACTTTGGTCCT+TGG | - | chr4.1:2644355-2644374 | MS.gene049129:intron | 40.0% |
! | CGATGGAGATTTTGTGGATT+CGG | - | chr4.1:2643519-2643538 | MS.gene049129:intron | 40.0% |
! | GAAAAGCTTGGTGAACTTGA+TGG | + | chr4.1:2643497-2643516 | None:intergenic | 40.0% |
! | GCACGTAATGCATTTGACTT+TGG | - | chr4.1:2644348-2644367 | MS.gene049129:intron | 40.0% |
! | GCTTTTCTCATAGGAGTCAA+AGG | - | chr4.1:2644161-2644180 | MS.gene049129:intron | 40.0% |
! | GTTATAGCAAGGATTAGCGA+AGG | - | chr4.1:2644291-2644310 | MS.gene049129:intron | 40.0% |
! | TTCACCAAGCTTTTCATCGA+TGG | - | chr4.1:2643502-2643521 | MS.gene049129:CDS | 40.0% |
!! | GATTTTGTGGATTCGGTTTC+AGG | - | chr4.1:2643526-2643545 | MS.gene049129:intron | 40.0% |
AAAGTCCGGGGTTTAAACTC+CGG | - | chr4.1:2644596-2644615 | MS.gene049129:intron | 45.0% | |
GAACAGGAGAGGTTATAGCA+AGG | - | chr4.1:2644280-2644299 | MS.gene049129:intron | 45.0% | |
GCTATAACCTCTCCTGTTCT+TGG | + | chr4.1:2644279-2644298 | None:intergenic | 45.0% | |
! | AAGCTTGGTGAACTTGATGG+TGG | + | chr4.1:2643494-2643513 | None:intergenic | 45.0% |
! | AGCTTGGTGAACTTGATGGT+GGG | + | chr4.1:2643493-2643512 | None:intergenic | 45.0% |
! | CGAGCTTAACTCAGTTGGTA+GGG | - | chr4.1:2644555-2644574 | MS.gene049129:intron | 45.0% |
CCAACTGAGTTAAGCTCGCA+AGG | + | chr4.1:2644553-2644572 | None:intergenic | 50.0% | |
CCTTGCGAGCTTAACTCAGT+TGG | - | chr4.1:2644550-2644569 | MS.gene049129:intron | 50.0% | |
GCGAGCTTAACTCAGTTGGT+AGG | - | chr4.1:2644554-2644573 | MS.gene049129:intron | 50.0% | |
! | AATAACATACAGCACCGGGC+AGG | + | chr4.1:2644386-2644405 | None:intergenic | 50.0% |
!! | ATGGTGGGTTCGCCATTAAC+TGG | + | chr4.1:2643478-2643497 | None:intergenic | 50.0% |
!! | TGGTGGGTTCGCCATTAACT+GGG | + | chr4.1:2643477-2643496 | None:intergenic | 50.0% |
TGCGGGAGGTGAGAAAGCTA+TGG | - | chr4.1:2643950-2643969 | MS.gene049129:CDS | 55.0% | |
GGTGGCCGGAGTTTAAACCC+CGG | + | chr4.1:2644604-2644623 | None:intergenic | 60.0% | |
! | AACATACAGCACCGGGCAGG+CGG | + | chr4.1:2644383-2644402 | None:intergenic | 60.0% |
! | ACATACAGCACCGGGCAGGC+GGG | + | chr4.1:2644382-2644401 | None:intergenic | 65.0% |
! | CATACAGCACCGGGCAGGCG+GGG | + | chr4.1:2644381-2644400 | None:intergenic | 70.0% |
! | GGTCCTTGGCCCCGCCTGCC+CGG | - | chr4.1:2644369-2644388 | MS.gene049129:intron | 80.0% |
! | GCACCGGGCAGGCGGGGCCA+AGG | + | chr4.1:2644375-2644394 | None:intergenic | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 2643466 | 2644818 | 2643466 | ID=MS.gene049129 |
chr4.1 | mRNA | 2643466 | 2644818 | 2643466 | ID=MS.gene049129.t1;Parent=MS.gene049129 |
chr4.1 | exon | 2644737 | 2644818 | 2644737 | ID=MS.gene049129.t1.exon1;Parent=MS.gene049129.t1 |
chr4.1 | CDS | 2644737 | 2644818 | 2644737 | ID=cds.MS.gene049129.t1;Parent=MS.gene049129.t1 |
chr4.1 | exon | 2643889 | 2644031 | 2643889 | ID=MS.gene049129.t1.exon2;Parent=MS.gene049129.t1 |
chr4.1 | CDS | 2643889 | 2644031 | 2643889 | ID=cds.MS.gene049129.t1;Parent=MS.gene049129.t1 |
chr4.1 | exon | 2643466 | 2643528 | 2643466 | ID=MS.gene049129.t1.exon3;Parent=MS.gene049129.t1 |
chr4.1 | CDS | 2643466 | 2643528 | 2643466 | ID=cds.MS.gene049129.t1;Parent=MS.gene049129.t1 |
Gene Sequence |
Protein sequence |