Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56080.t1 | XP_013456813.1 | 98.2 | 280 | 5 | 0 | 1 | 280 | 1 | 280 | 2.20E-158 | 568.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56080.t1 | Q9ZVF6 | 74.8 | 278 | 69 | 1 | 2 | 279 | 5 | 281 | 6.1e-125 | 448.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56080.t1 | A0A072UM45 | 98.2 | 280 | 5 | 0 | 1 | 280 | 1 | 280 | 1.6e-158 | 568.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055150 | MS.gene56080 | 0.807815 | 4.20E-50 | -1.69E-46 |
| MS.gene056530 | MS.gene56080 | 0.811984 | 5.33E-51 | -1.69E-46 |
| MS.gene05884 | MS.gene56080 | 0.838365 | 3.00E-57 | -1.69E-46 |
| MS.gene059436 | MS.gene56080 | 0.964434 | 2.54E-123 | -1.69E-46 |
| MS.gene059514 | MS.gene56080 | 0.98065 | 1.04E-150 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene01565 | MS.gene56080 | PPI |
| MS.gene002583 | MS.gene56080 | PPI |
| MS.gene004252 | MS.gene56080 | PPI |
| MS.gene54295 | MS.gene56080 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56080.t1 | MTR_4g084560 | 98.214 | 280 | 5 | 0 | 1 | 280 | 1 | 280 | 0.0 | 577 |
| MS.gene56080.t1 | MTR_4g084560 | 94.444 | 288 | 6 | 2 | 1 | 280 | 1 | 286 | 0.0 | 559 |
| MS.gene56080.t1 | MTR_4g084560 | 94.643 | 280 | 5 | 1 | 1 | 280 | 1 | 270 | 0.0 | 548 |
| MS.gene56080.t1 | MTR_4g084560 | 98.120 | 266 | 5 | 0 | 1 | 266 | 1 | 266 | 0.0 | 546 |
| MS.gene56080.t1 | MTR_4g084560 | 97.992 | 249 | 5 | 0 | 32 | 280 | 1 | 249 | 0.0 | 516 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56080.t1 | AT2G01490 | 74.820 | 278 | 69 | 1 | 2 | 279 | 5 | 281 | 1.56e-157 | 440 |
| MS.gene56080.t1 | AT2G01490 | 74.820 | 278 | 69 | 1 | 2 | 279 | 5 | 281 | 1.56e-157 | 440 |
Find 68 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGATGCCACCATATTAAA+TGG | 0.254138 | 4.4:-28309510 | MS.gene56080:CDS |
| TCTTCTTCTGAGAAGGCTTC+AGG | 0.276208 | 4.4:-28310623 | MS.gene56080:CDS |
| GCAGTCCATGTATATATTTA+AGG | 0.276974 | 4.4:-28310561 | MS.gene56080:intron |
| CCAAAGGCAACCATTTAATA+TGG | 0.291161 | 4.4:+28309500 | None:intergenic |
| TAGTTTACATAGAGTGGTTC+TGG | 0.296838 | 4.4:+28308311 | None:intergenic |
| GGTTGCCTTTGGGCAATTCC+TGG | 0.303363 | 4.4:-28309489 | MS.gene56080:CDS |
| CCATATTAAATGGTTGCCTT+TGG | 0.320118 | 4.4:-28309500 | MS.gene56080:CDS |
| GCAAATGGGCAGCAGAAAAT+TGG | 0.320664 | 4.4:-28309025 | MS.gene56080:intron |
| TACATGGACTGCATGATTAC+TGG | 0.333257 | 4.4:+28310572 | None:intergenic |
| TGAAGTTAAAGCCGGGTCTT+TGG | 0.346038 | 4.4:-28309254 | MS.gene56080:CDS |
| CATATTAAATGGTTGCCTTT+GGG | 0.356536 | 4.4:-28309499 | MS.gene56080:CDS |
| TTATTGTTAGAGAAAGCATT+TGG | 0.358097 | 4.4:-28311218 | MS.gene56080:intron |
| TCAGGTTTGATGAGCTCCTT+AGG | 0.378116 | 4.4:-28310605 | MS.gene56080:CDS |
| AAAGATTTCCTTCTTCTTTG+AGG | 0.389116 | 4.4:-28311331 | MS.gene56080:CDS |
| TATTGTTAGAGAAAGCATTT+GGG | 0.389370 | 4.4:-28311217 | MS.gene56080:intron |
| TTATTGAGGGAAAGTTCCTT+TGG | 0.396538 | 4.4:+28311173 | None:intergenic |
| CACAGCCCTGTGCATGTTTG+TGG | 0.396548 | 4.4:+28309543 | None:intergenic |
| ATTGACAGCAACCTGGCATC+GGG | 0.398754 | 4.4:-28309611 | MS.gene56080:intron |
| GAGAAAGCATTTGGGGATGA+TGG | 0.415329 | 4.4:-28311209 | MS.gene56080:CDS |
| GACCCGGCTTTAACTTCAAT+AGG | 0.423086 | 4.4:+28309259 | None:intergenic |
| TTGGTTACCTTGAGAGTTGA+AGG | 0.437086 | 4.4:+28311683 | None:intergenic |
| AAGATTTCCTTCTTCTTTGA+GGG | 0.437800 | 4.4:-28311330 | MS.gene56080:intron |
| CCCTGTGCATGTTTGTGGTT+CGG | 0.455033 | 4.4:+28309548 | None:intergenic |
| TAGATACTGTTGGCTGCAAA+TGG | 0.458033 | 4.4:-28309040 | MS.gene56080:CDS |
| GATAGTTAGTTTACATAGAG+TGG | 0.460224 | 4.4:+28308305 | None:intergenic |
| TATAAATAAACGAGTTATCC+TGG | 0.469410 | 4.4:+28309571 | None:intergenic |
| GGGTCTTTGGTTGTCATCCA+TGG | 0.470343 | 4.4:-28309241 | MS.gene56080:CDS |
| ATGAATACCCTCAAAGAAGA+AGG | 0.472672 | 4.4:+28311323 | None:intergenic |
| GAACTTTCCCTCAATAAAGT+TGG | 0.479271 | 4.4:-28311167 | MS.gene56080:CDS |
| TACCATGGCCAACTTTATTG+AGG | 0.480797 | 4.4:+28311159 | None:intergenic |
| GAAGAAAACTTCTTGAATGC+AGG | 0.483645 | 4.4:+28310641 | None:intergenic |
| TTTCAGGATCAGACGGAAAG+TGG | 0.483932 | 4.4:-28308336 | MS.gene56080:intron |
| ACCATGGCCAACTTTATTGA+GGG | 0.484932 | 4.4:+28311160 | None:intergenic |
| AAAATAGAGGCGGTGGAAGA+AGG | 0.486490 | 4.4:+28311501 | None:intergenic |
| TTGAAGGATTCAAGCTGATC+CGG | 0.488379 | 4.4:+28311699 | None:intergenic |
| TATTGACAGCAACCTGGCAT+CGG | 0.490867 | 4.4:-28309612 | MS.gene56080:intron |
| GTTCCTATTGAAGTTAAAGC+CGG | 0.491121 | 4.4:-28309262 | MS.gene56080:CDS |
| ACCGAACCACAAACATGCAC+AGG | 0.509362 | 4.4:-28309549 | MS.gene56080:CDS |
| TACTGGTCTCTTGTAACCTA+AGG | 0.518263 | 4.4:+28310589 | None:intergenic |
| GGTGGAGAAAATAGAGGCGG+TGG | 0.519274 | 4.4:+28311494 | None:intergenic |
| AACATGCACAGGGCTGTGGC+TGG | 0.521401 | 4.4:-28309538 | MS.gene56080:CDS |
| CACGATGGGTTTGCTTACAC+CGG | 0.549691 | 4.4:-28311718 | None:intergenic |
| CTTGAATCCTTCAACTCTCA+AGG | 0.549943 | 4.4:-28311690 | MS.gene56080:intron |
| ATGTACCTTAAATATATACA+TGG | 0.552780 | 4.4:+28310556 | None:intergenic |
| GATAAAGAGGATGGAGCAGT+TGG | 0.552962 | 4.4:-28311538 | MS.gene56080:CDS |
| AAATTGATAGCATGATAAAG+AGG | 0.555437 | 4.4:-28311551 | MS.gene56080:CDS |
| CACAAACATGCACAGGGCTG+TGG | 0.556191 | 4.4:-28309542 | MS.gene56080:CDS |
| TCCCTCAATAAAGTTGGCCA+TGG | 0.556630 | 4.4:-28311161 | MS.gene56080:intron |
| TGATAGCATGATAAAGAGGA+TGG | 0.560483 | 4.4:-28311547 | MS.gene56080:CDS |
| GGGTGAAGTAGTGCCTCACC+AGG | 0.563698 | 4.4:-28309589 | MS.gene56080:CDS |
| TTCCTATTGAAGTTAAAGCC+GGG | 0.573559 | 4.4:-28309261 | MS.gene56080:CDS |
| TGACAGCAACCTGGCATCGG+GGG | 0.589195 | 4.4:-28309609 | MS.gene56080:intron |
| AGATTCTTCAGAGATGAAGA+TGG | 0.593662 | 4.4:-28309331 | MS.gene56080:CDS |
| ATGGCAATCTTATCCACCAA+AGG | 0.607737 | 4.4:-28309222 | MS.gene56080:intron |
| AAGATGGTGTCAAATTTGAT+CGG | 0.610693 | 4.4:-28309315 | MS.gene56080:CDS |
| AGATACTGTTGGCTGCAAAT+GGG | 0.618414 | 4.4:-28309039 | MS.gene56080:CDS |
| AAGGCAACCATTTAATATGG+TGG | 0.618923 | 4.4:+28309503 | None:intergenic |
| TTGCACGTGGTAGATACTGT+TGG | 0.622851 | 4.4:-28309050 | MS.gene56080:CDS |
| TTTGGTGGATAAGATTGCCA+TGG | 0.624104 | 4.4:+28309224 | None:intergenic |
| CCGAACCACAAACATGCACA+GGG | 0.624383 | 4.4:-28309548 | MS.gene56080:CDS |
| ATGGATGACAACCAAAGACC+CGG | 0.637824 | 4.4:+28309243 | None:intergenic |
| TGGTAACTTAAAGCAGCCAA+AGG | 0.650430 | 4.4:-28311189 | MS.gene56080:CDS |
| ATTGTTAGAGAAAGCATTTG+GGG | 0.650933 | 4.4:-28311216 | MS.gene56080:intron |
| TTGACAGCAACCTGGCATCG+GGG | 0.657122 | 4.4:-28309610 | MS.gene56080:intron |
| TTTGGTGGAGAAAATAGAGG+CGG | 0.659579 | 4.4:+28311491 | None:intergenic |
| ATAAACGAGTTATCCTGGTG+AGG | 0.674544 | 4.4:+28309576 | None:intergenic |
| GAGATCCAGGAATTGCCCAA+AGG | 0.691404 | 4.4:+28309484 | None:intergenic |
| ACATGCATACAGCTTGCACG+TGG | 0.710583 | 4.4:-28309063 | MS.gene56080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATCTTCATATAAAAAAAAT+GGG | + | chr4.4:28310036-28310055 | None:intergenic | 10.0% |
| !! | TTATCTTCATATAAAAAAAA+TGG | + | chr4.4:28310037-28310056 | None:intergenic | 10.0% |
| !! | AAACTTAAATAATGAAAAGT+AGG | + | chr4.4:28308599-28308618 | None:intergenic | 15.0% |
| !! | ATATTATGTGTATTTGAATT+AGG | - | chr4.4:28308902-28308921 | MS.gene56080:intron | 15.0% |
| !! | CATTAAAGAAAATTATATGA+AGG | + | chr4.4:28311397-28311416 | None:intergenic | 15.0% |
| !! | TCAAATACACATAATATTAA+AGG | + | chr4.4:28308899-28308918 | None:intergenic | 15.0% |
| !!! | AGATATGTTAAAGTTTTATA+TGG | - | chr4.4:28311164-28311183 | MS.gene56080:CDS | 15.0% |
| !!! | CTTCATATAATTTTCTTTAA+TGG | - | chr4.4:28311395-28311414 | MS.gene56080:intron | 15.0% |
| !!! | GATATAATCTAGAAATATTT+TGG | - | chr4.4:28309966-28309985 | MS.gene56080:intron | 15.0% |
| !!! | TCAATAAAAATTTTGTAATC+TGG | + | chr4.4:28310398-28310417 | None:intergenic | 15.0% |
| !!! | TCATAAAAATTCAATCTTTT+TGG | - | chr4.4:28308720-28308739 | MS.gene56080:intron | 15.0% |
| !!! | TGCATTATTTTTTAGTTTTA+TGG | - | chr4.4:28311420-28311439 | MS.gene56080:intron | 15.0% |
| !! | ATGTACCTTAAATATATACA+TGG | + | chr4.4:28309471-28309490 | None:intergenic | 20.0% |
| !!! | AAATCTTTTTGATCATAAGA+TGG | + | chr4.4:28310741-28310760 | None:intergenic | 20.0% |
| !!! | AAGTTAAGAATGAATTTTGA+AGG | + | chr4.4:28310893-28310912 | None:intergenic | 20.0% |
| !!! | AATCTAGAAATATTTTGGAT+TGG | - | chr4.4:28309971-28309990 | MS.gene56080:intron | 20.0% |
| !!! | ATTCTATCAATTTTCATTTC+AGG | - | chr4.4:28311672-28311691 | MS.gene56080:intron | 20.0% |
| !!! | CTATTTTTCTTAGTTTGTAT+TGG | - | chr4.4:28309225-28309244 | MS.gene56080:CDS | 20.0% |
| !!! | TTATCTTCTGTTTTATTGTA+TGG | - | chr4.4:28310647-28310666 | MS.gene56080:CDS | 20.0% |
| ! | AAAGATATATATCACAGACA+TGG | - | chr4.4:28310286-28310305 | MS.gene56080:intron | 25.0% |
| ! | AAAGTTTCCATGTATTAAAC+CGG | + | chr4.4:28309793-28309812 | None:intergenic | 25.0% |
| ! | AAGTAATTAAGTAACTAACC+TGG | + | chr4.4:28308561-28308580 | None:intergenic | 25.0% |
| ! | AATGAAAAGTAGGAGATAAA+GGG | + | chr4.4:28308589-28308608 | None:intergenic | 25.0% |
| ! | AGTTATTGTAACCATGAATT+CGG | + | chr4.4:28309521-28309540 | None:intergenic | 25.0% |
| ! | CTTCATATAAAAAAAATGGG+CGG | + | chr4.4:28310033-28310052 | None:intergenic | 25.0% |
| ! | TAAAGTAAGGATACATTATC+AGG | + | chr4.4:28310847-28310866 | None:intergenic | 25.0% |
| ! | TAATGAAAAGTAGGAGATAA+AGG | + | chr4.4:28308590-28308609 | None:intergenic | 25.0% |
| ! | TATAAATAAACGAGTTATCC+TGG | + | chr4.4:28310456-28310475 | None:intergenic | 25.0% |
| ! | TATATGGCCATATAAAACTA+AGG | - | chr4.4:28311180-28311199 | MS.gene56080:CDS | 25.0% |
| !! | AAATTGATAGCATGATAAAG+AGG | - | chr4.4:28308473-28308492 | MS.gene56080:intron | 25.0% |
| !! | GTTTAATACATGGAAACTTT+TGG | - | chr4.4:28309793-28309812 | MS.gene56080:intron | 25.0% |
| !! | TTGAATCTAACTTTTCCTTT+TGG | - | chr4.4:28309312-28309331 | MS.gene56080:CDS | 25.0% |
| !!! | ACTTAATTTGTTCTCTGATT+GGG | - | chr4.4:28309664-28309683 | MS.gene56080:intron | 25.0% |
| !!! | AGATTCTCCTTAGTTTTATA+TGG | + | chr4.4:28311190-28311209 | None:intergenic | 25.0% |
| !!! | CAATGTTGTTTTTGTTTTTC+TGG | - | chr4.4:28309598-28309617 | MS.gene56080:CDS | 25.0% |
| !!! | CTTTTAAAATTGCCATATGA+TGG | - | chr4.4:28310328-28310347 | MS.gene56080:intron | 25.0% |
| !!! | GAATTATTTTAGCAAACCTT+TGG | + | chr4.4:28310821-28310840 | None:intergenic | 25.0% |
| !!! | TACTTAATTTGTTCTCTGAT+TGG | - | chr4.4:28309663-28309682 | MS.gene56080:intron | 25.0% |
| !!! | TAGTTTGTATTGGTTTGTTT+GGG | - | chr4.4:28309235-28309254 | MS.gene56080:CDS | 25.0% |
| !!! | TATTGAATCGTTTTCTAGTA+AGG | - | chr4.4:28308447-28308466 | MS.gene56080:intron | 25.0% |
| !!! | TATTGTTAGAGAAAGCATTT+GGG | - | chr4.4:28308807-28308826 | MS.gene56080:intron | 25.0% |
| !!! | TCTTTAATTTGCAATCAAAC+TGG | - | chr4.4:28309729-28309748 | MS.gene56080:intron | 25.0% |
| !!! | TTAGTTTGTATTGGTTTGTT+TGG | - | chr4.4:28309234-28309253 | MS.gene56080:CDS | 25.0% |
| !!! | TTATTGTTAGAGAAAGCATT+TGG | - | chr4.4:28308806-28308825 | MS.gene56080:intron | 25.0% |
| AAAGATTTCCTTCTTCTTTG+AGG | - | chr4.4:28308693-28308712 | MS.gene56080:intron | 30.0% | |
| AAGATTTCCTTCTTCTTTGA+GGG | - | chr4.4:28308694-28308713 | MS.gene56080:intron | 30.0% | |
| AAGTTATCCTGGAAAGTTTA+TGG | - | chr4.4:28309069-28309088 | MS.gene56080:CDS | 30.0% | |
| ACACATAATATTAAAGGCAG+AGG | + | chr4.4:28308893-28308912 | None:intergenic | 30.0% | |
| ATATGATGAGAGAAGTGAAA+GGG | + | chr4.4:28308372-28308391 | None:intergenic | 30.0% | |
| CATATTAAATGGTTGCCTTT+GGG | - | chr4.4:28310525-28310544 | MS.gene56080:intron | 30.0% | |
| CATTGATGCATGATTGTAAA+AGG | + | chr4.4:28310082-28310101 | None:intergenic | 30.0% | |
| GCAGTCCATGTATATATTTA+AGG | - | chr4.4:28309463-28309482 | MS.gene56080:intron | 30.0% | |
| GTTTGGATTGACTAATTTGA+GGG | + | chr4.4:28309161-28309180 | None:intergenic | 30.0% | |
| TAACAACATATATGCCACTA+AGG | + | chr4.4:28309853-28309872 | None:intergenic | 30.0% | |
| TAAGGAACACTATGAATTGA+TGG | + | chr4.4:28311455-28311474 | None:intergenic | 30.0% | |
| TAAGGAGAATCTTGTCTTAA+GGG | - | chr4.4:28311198-28311217 | MS.gene56080:CDS | 30.0% | |
| TACTAAGATACTCCATCATA+TGG | + | chr4.4:28310343-28310362 | None:intergenic | 30.0% | |
| TACTTTATAGCATAGAAGGA+AGG | - | chr4.4:28310860-28310879 | MS.gene56080:intron | 30.0% | |
| TAGTGTTCCTTAAATCATGA+TGG | - | chr4.4:28311463-28311482 | MS.gene56080:intron | 30.0% | |
| TATATGATGAGAGAAGTGAA+AGG | + | chr4.4:28308373-28308392 | None:intergenic | 30.0% | |
| TCCTTACTTTATAGCATAGA+AGG | - | chr4.4:28310856-28310875 | MS.gene56080:intron | 30.0% | |
| TCCTTCTATGCTATAAAGTA+AGG | + | chr4.4:28310860-28310879 | None:intergenic | 30.0% | |
| TGTTTGGATTGACTAATTTG+AGG | + | chr4.4:28309162-28309181 | None:intergenic | 30.0% | |
| TTTCCAAAATAGCACTAGTT+TGG | - | chr4.4:28311559-28311578 | MS.gene56080:CDS | 30.0% | |
| ! | AACTAGTCTGTATAATCTGA+TGG | - | chr4.4:28309936-28309955 | MS.gene56080:intron | 30.0% |
| ! | AAGAAGACAAGATTTTGGAT+AGG | - | chr4.4:28311236-28311255 | MS.gene56080:intron | 30.0% |
| ! | AAGATGGTGTCAAATTTGAT+CGG | - | chr4.4:28310709-28310728 | MS.gene56080:intron | 30.0% |
| ! | AATCTAACTTTTCCTTTTGG+TGG | - | chr4.4:28309315-28309334 | MS.gene56080:CDS | 30.0% |
| ! | AATTTTTATTGACAGCAACC+TGG | - | chr4.4:28310406-28310425 | MS.gene56080:intron | 30.0% |
| ! | ATTTTCATTTCAGGATCAGA+CGG | - | chr4.4:28311681-28311700 | MS.gene56080:intron | 30.0% |
| ! | CGTTTTCCTAAACAAACTAA+GGG | + | chr4.4:28309186-28309205 | None:intergenic | 30.0% |
| ! | CTGTATACTTTTCTGATTGA+TGG | - | chr4.4:28310192-28310211 | MS.gene56080:intron | 30.0% |
| ! | GTAACGTTTTTCTTTCTTTC+TGG | - | chr4.4:28310569-28310588 | MS.gene56080:CDS | 30.0% |
| ! | GTATGAAGAAGACAAGATTT+TGG | - | chr4.4:28311231-28311250 | MS.gene56080:intron | 30.0% |
| ! | GTTATTTCAACATTGCAGTT+TGG | - | chr4.4:28309993-28310012 | MS.gene56080:intron | 30.0% |
| ! | TATTTGAATTAGGCTCTGAT+TGG | - | chr4.4:28308912-28308931 | MS.gene56080:intron | 30.0% |
| ! | TTTTGATCATAAGATGGTGA+TGG | + | chr4.4:28310735-28310754 | None:intergenic | 30.0% |
| !! | AATTAAAGAAGTATCCACAC+AGG | + | chr4.4:28309718-28309737 | None:intergenic | 30.0% |
| !! | ATTGTTAGAGAAAGCATTTG+GGG | - | chr4.4:28308808-28308827 | MS.gene56080:intron | 30.0% |
| !! | GTTGTTTTCATAAGTTATCC+TGG | - | chr4.4:28309058-28309077 | MS.gene56080:CDS | 30.0% |
| !! | TAAGTAACTAACCTGGTTTT+TGG | + | chr4.4:28308554-28308573 | None:intergenic | 30.0% |
| !! | TATTATGCCGGTTTAATACA+TGG | - | chr4.4:28309783-28309802 | MS.gene56080:intron | 30.0% |
| !! | TATTGGTTTGTTTGGGATTT+GGG | - | chr4.4:28309242-28309261 | MS.gene56080:CDS | 30.0% |
| !! | TTTCTGGTTTATTTGTTACC+TGG | - | chr4.4:28310585-28310604 | MS.gene56080:CDS | 30.0% |
| !!! | GTTGTTTTTGTTTTTCTGGA+GGG | - | chr4.4:28309602-28309621 | MS.gene56080:CDS | 30.0% |
| !!! | TATCCAAACTAGTGCTATTT+TGG | + | chr4.4:28311565-28311584 | None:intergenic | 30.0% |
| !!! | TCTTAACTTTTTTTCCTGTG+TGG | - | chr4.4:28310904-28310923 | MS.gene56080:intron | 30.0% |
| !!! | TGTTGTTTTTGTTTTTCTGG+AGG | - | chr4.4:28309601-28309620 | MS.gene56080:CDS | 30.0% |
| !!! | TTATTTTAGCAAACCTTTGG+TGG | + | chr4.4:28310818-28310837 | None:intergenic | 30.0% |
| !!! | TTGTTTTTGTTATACGAACG+AGG | - | chr4.4:28311496-28311515 | MS.gene56080:CDS | 30.0% |
| !!! | TTGTTTTTGTTTTTCTGGAG+GGG | - | chr4.4:28309603-28309622 | MS.gene56080:CDS | 30.0% |
| AAGAAATTCAAGCAAGGCAT+AGG | + | chr4.4:28311349-28311368 | None:intergenic | 35.0% | |
| AAGGAGAATCTTGTCTTAAG+GGG | - | chr4.4:28311199-28311218 | MS.gene56080:CDS | 35.0% | |
| AAGGCAACCATTTAATATGG+TGG | + | chr4.4:28310524-28310543 | None:intergenic | 35.0% | |
| AATCTTGTCTTAAGGGGTTA+GGG | - | chr4.4:28311205-28311224 | MS.gene56080:CDS | 35.0% | |
| AATTGGTGAGTTTGGATCAT+AGG | - | chr4.4:28311016-28311035 | MS.gene56080:intron | 35.0% | |
| AGATTCTTCAGAGATGAAGA+TGG | - | chr4.4:28310693-28310712 | MS.gene56080:intron | 35.0% | |
| AGTCGAAGTTCAAATAATCC+AGG | + | chr4.4:28310606-28310625 | None:intergenic | 35.0% | |
| ATGAAGGCAGAGAACTAAAT+TGG | + | chr4.4:28311381-28311400 | None:intergenic | 35.0% | |
| ATGAATACCCTCAAAGAAGA+AGG | + | chr4.4:28308704-28308723 | None:intergenic | 35.0% | |
| ATTCAATCATATGCATGCAC+AGG | - | chr4.4:28308415-28308434 | MS.gene56080:intron | 35.0% | |
| ATTGGTGAGTTTGGATCATA+GGG | - | chr4.4:28311017-28311036 | MS.gene56080:intron | 35.0% | |
| ATTGTATGGTTGTTGCAGAT+GGG | - | chr4.4:28310661-28310680 | MS.gene56080:CDS | 35.0% | |
| CAAAGCAACTTTCATTAAGC+TGG | + | chr4.4:28309916-28309935 | None:intergenic | 35.0% | |
| CCAAAGGCAACCATTTAATA+TGG | + | chr4.4:28310527-28310546 | None:intergenic | 35.0% | |
| CCATATTAAATGGTTGCCTT+TGG | - | chr4.4:28310524-28310543 | MS.gene56080:intron | 35.0% | |
| CTAAGGAGAATCTTGTCTTA+AGG | - | chr4.4:28311197-28311216 | MS.gene56080:CDS | 35.0% | |
| GAACTTTCCCTCAATAAAGT+TGG | - | chr4.4:28308857-28308876 | MS.gene56080:intron | 35.0% | |
| GAAGAAAACTTCTTGAATGC+AGG | + | chr4.4:28309386-28309405 | None:intergenic | 35.0% | |
| GAAGATGCCACCATATTAAA+TGG | - | chr4.4:28310514-28310533 | MS.gene56080:intron | 35.0% | |
| GTATACAGCAATACTAGCTA+CGG | + | chr4.4:28310180-28310199 | None:intergenic | 35.0% | |
| GTATCCAAGAAATTCAAGCA+AGG | + | chr4.4:28311355-28311374 | None:intergenic | 35.0% | |
| GTTCCTATTGAAGTTAAAGC+CGG | - | chr4.4:28310762-28310781 | MS.gene56080:intron | 35.0% | |
| TAAACAAACTAAGGGCTGTT+TGG | + | chr4.4:28309178-28309197 | None:intergenic | 35.0% | |
| TAAATCATGATGGCTGCAAA+AGG | - | chr4.4:28311473-28311492 | MS.gene56080:intron | 35.0% | |
| TACATGTCCATAAACTTTCC+AGG | + | chr4.4:28309079-28309098 | None:intergenic | 35.0% | |
| TAGTTTACATAGAGTGGTTC+TGG | + | chr4.4:28311716-28311735 | None:intergenic | 35.0% | |
| TATGCCTTGCTTGAATTTCT+TGG | - | chr4.4:28311348-28311367 | MS.gene56080:CDS | 35.0% | |
| TATTGCATTCCAGTCAAAAC+AGG | + | chr4.4:28310130-28310149 | None:intergenic | 35.0% | |
| TATTGTATGGTTGTTGCAGA+TGG | - | chr4.4:28310660-28310679 | MS.gene56080:CDS | 35.0% | |
| TGATAGCATGATAAAGAGGA+TGG | - | chr4.4:28308477-28308496 | MS.gene56080:intron | 35.0% | |
| TGTGCATGCATATGATTGAA+TGG | + | chr4.4:28308416-28308435 | None:intergenic | 35.0% | |
| TTATTGAGGGAAAGTTCCTT+TGG | + | chr4.4:28308854-28308873 | None:intergenic | 35.0% | |
| TTCCTATTGAAGTTAAAGCC+GGG | - | chr4.4:28310763-28310782 | MS.gene56080:intron | 35.0% | |
| TTTGCAGCCATCATGATTTA+AGG | + | chr4.4:28311473-28311492 | None:intergenic | 35.0% | |
| ! | GCGTTTTCCTAAACAAACTA+AGG | + | chr4.4:28309187-28309206 | None:intergenic | 35.0% |
| ! | GGAAAACTGTGTTATTATGC+CGG | - | chr4.4:28309771-28309790 | MS.gene56080:intron | 35.0% |
| ! | GTTTTCAGTTTCCGAATTCA+TGG | - | chr4.4:28309507-28309526 | MS.gene56080:CDS | 35.0% |
| ! | TATTTTCTCCACCAAAAACC+AGG | - | chr4.4:28308540-28308559 | MS.gene56080:intron | 35.0% |
| ! | TCTGGTTATGATAATGATCG+CGG | + | chr4.4:28310380-28310399 | None:intergenic | 35.0% |
| !! | AAACAGCCCTTAGTTTGTTT+AGG | - | chr4.4:28309177-28309196 | MS.gene56080:intron | 35.0% |
| !! | GAAGTTTTCTTCTTCTGAGA+AGG | - | chr4.4:28309394-28309413 | MS.gene56080:intron | 35.0% |
| !! | GTATTGGTTTGTTTGGGATT+TGG | - | chr4.4:28309241-28309260 | MS.gene56080:CDS | 35.0% |
| !!! | AACTTTTTTTCCTGTGTGGA+TGG | - | chr4.4:28310908-28310927 | MS.gene56080:intron | 35.0% |
| !!! | GTTTTTGGTGGAGAAAATAG+AGG | + | chr4.4:28308539-28308558 | None:intergenic | 35.0% |
| ACCATGGCCAACTTTATTGA+GGG | + | chr4.4:28308867-28308886 | None:intergenic | 40.0% | |
| ATAAACGAGTTATCCTGGTG+AGG | + | chr4.4:28310451-28310470 | None:intergenic | 40.0% | |
| ATGGCAATCTTATCCACCAA+AGG | - | chr4.4:28310802-28310821 | MS.gene56080:intron | 40.0% | |
| CAGCAGAAAATTGGTGAGTT+TGG | - | chr4.4:28311008-28311027 | MS.gene56080:intron | 40.0% | |
| CTTGAATCCTTCAACTCTCA+AGG | - | chr4.4:28308334-28308353 | MS.gene56080:intron | 40.0% | |
| GAATCTTGTCTTAAGGGGTT+AGG | - | chr4.4:28311204-28311223 | MS.gene56080:CDS | 40.0% | |
| GTGTTAGCAAAAGTCAACCA+AGG | + | chr4.4:28311649-28311668 | None:intergenic | 40.0% | |
| TACCATGGCCAACTTTATTG+AGG | + | chr4.4:28308868-28308887 | None:intergenic | 40.0% | |
| TGGTAACTTAAAGCAGCCAA+AGG | - | chr4.4:28308835-28308854 | MS.gene56080:intron | 40.0% | |
| TTAGCAAAAGTCAACCAAGG+AGG | + | chr4.4:28311646-28311665 | None:intergenic | 40.0% | |
| TTGAAGGATTCAAGCTGATC+CGG | + | chr4.4:28308328-28308347 | None:intergenic | 40.0% | |
| TTGGTTACCTTGAGAGTTGA+AGG | + | chr4.4:28308344-28308363 | None:intergenic | 40.0% | |
| TTTGGTGGAGAAAATAGAGG+CGG | + | chr4.4:28308536-28308555 | None:intergenic | 40.0% | |
| ! | AGATACTGTTGGCTGCAAAT+GGG | - | chr4.4:28310985-28311004 | MS.gene56080:intron | 40.0% |
| ! | CATGTCTCGATTTTGTAGAC+TGG | + | chr4.4:28310946-28310965 | None:intergenic | 40.0% |
| ! | TACATGGACTGCATGATTAC+TGG | + | chr4.4:28309455-28309474 | None:intergenic | 40.0% |
| ! | TACTGGTCTCTTGTAACCTA+AGG | + | chr4.4:28309438-28309457 | None:intergenic | 40.0% |
| ! | TAGATACTGTTGGCTGCAAA+TGG | - | chr4.4:28310984-28311003 | MS.gene56080:intron | 40.0% |
| ! | TTTGGTGGATAAGATTGCCA+TGG | + | chr4.4:28310803-28310822 | None:intergenic | 40.0% |
| !! | AACTTTTCCTTTTGGTGGAC+TGG | - | chr4.4:28309320-28309339 | MS.gene56080:CDS | 40.0% |
| !! | GTAACTAACCTGGTTTTTGG+TGG | + | chr4.4:28308551-28308570 | None:intergenic | 40.0% |
| !!! | ACGTTACTTTTGTGAGATCC+AGG | + | chr4.4:28310556-28310575 | None:intergenic | 40.0% |
| !!! | ACTTTTCCTTTTGGTGGACT+GGG | - | chr4.4:28309321-28309340 | MS.gene56080:CDS | 40.0% |
| AAAACGCGTGCAAGATAGTG+GGG | - | chr4.4:28309200-28309219 | MS.gene56080:intron | 45.0% | |
| AAAATAGAGGCGGTGGAAGA+AGG | + | chr4.4:28308526-28308545 | None:intergenic | 45.0% | |
| AACAGTCTCACCAGTGCTTA+TGG | - | chr4.4:28309126-28309145 | MS.gene56080:intron | 45.0% | |
| ACCAGGTGAAGTCAACTACA+AGG | + | chr4.4:28311278-28311297 | None:intergenic | 45.0% | |
| ATGGATGACAACCAAAGACC+CGG | + | chr4.4:28310784-28310803 | None:intergenic | 45.0% | |
| CAATCAGTACACTACCTCCT+TGG | - | chr4.4:28311629-28311648 | MS.gene56080:intron | 45.0% | |
| CCAGGTGAAGTCAACTACAA+GGG | + | chr4.4:28311277-28311296 | None:intergenic | 45.0% | |
| GAAAACGCGTGCAAGATAGT+GGG | - | chr4.4:28309199-28309218 | MS.gene56080:intron | 45.0% | |
| GATAAAGAGGATGGAGCAGT+TGG | - | chr4.4:28308486-28308505 | MS.gene56080:intron | 45.0% | |
| GATGAGAGAAGTGAAAGGGT+TGG | + | chr4.4:28308368-28308387 | None:intergenic | 45.0% | |
| GCAAATGGGCAGCAGAAAAT+TGG | - | chr4.4:28310999-28311018 | MS.gene56080:intron | 45.0% | |
| GCATTCCAGTCAAAACAGGT+TGG | + | chr4.4:28310126-28310145 | None:intergenic | 45.0% | |
| GGAGAAGGGGTTGTATGATT+TGG | - | chr4.4:28309624-28309643 | MS.gene56080:intron | 45.0% | |
| GGTGTGTGATTGAATCTGCT+TGG | - | chr4.4:28309750-28309769 | MS.gene56080:intron | 45.0% | |
| GTATCTACTGCCATAAGCAC+TGG | + | chr4.4:28309139-28309158 | None:intergenic | 45.0% | |
| TATTGACAGCAACCTGGCAT+CGG | - | chr4.4:28310412-28310431 | MS.gene56080:intron | 45.0% | |
| TCAGGTTTGATGAGCTCCTT+AGG | - | chr4.4:28309419-28309438 | MS.gene56080:intron | 45.0% | |
| TCCACACAGGTAACAGCATT+CGG | + | chr4.4:28309705-28309724 | None:intergenic | 45.0% | |
| TCCCTCAATAAAGTTGGCCA+TGG | - | chr4.4:28308863-28308882 | MS.gene56080:intron | 45.0% | |
| TGAAGTTAAAGCCGGGTCTT+TGG | - | chr4.4:28310770-28310789 | MS.gene56080:intron | 45.0% | |
| TTAAAGGCAGAGGCTTACCA+TGG | + | chr4.4:28308883-28308902 | None:intergenic | 45.0% | |
| TTGCACGTGGTAGATACTGT+TGG | - | chr4.4:28310974-28310993 | MS.gene56080:intron | 45.0% | |
| TTTCAGGATCAGACGGAAAG+TGG | - | chr4.4:28311688-28311707 | MS.gene56080:intron | 45.0% | |
| ! | AGACTGTTTGCGAGAGCATA+CGG | + | chr4.4:28309114-28309133 | None:intergenic | 45.0% |
| ! | GACCCGGCTTTAACTTCAAT+AGG | + | chr4.4:28310768-28310787 | None:intergenic | 45.0% |
| ! | TCTTCTTCTGAGAAGGCTTC+AGG | - | chr4.4:28309401-28309420 | MS.gene56080:intron | 45.0% |
| ! | TTCCAGTCAAAACAGGTTGG+AGG | + | chr4.4:28310123-28310142 | None:intergenic | 45.0% |
| !! | GAGAAAGCATTTGGGGATGA+TGG | - | chr4.4:28308815-28308834 | MS.gene56080:intron | 45.0% |
| !! | GAGAAGTGAAAGGGTTGGTT+TGG | + | chr4.4:28308363-28308382 | None:intergenic | 45.0% |
| !! | TGTTTTTCTGGAGGGGAGAA+GGG | - | chr4.4:28309610-28309629 | MS.gene56080:intron | 45.0% |
| !! | TTGTTTTTCTGGAGGGGAGA+AGG | - | chr4.4:28309609-28309628 | MS.gene56080:intron | 45.0% |
| ACAGGTAACAGCATTCGGGT+GGG | + | chr4.4:28309700-28309719 | None:intergenic | 50.0% | |
| ACATGCATACAGCTTGCACG+TGG | - | chr4.4:28310961-28310980 | MS.gene56080:intron | 50.0% | |
| ACCGAACCACAAACATGCAC+AGG | - | chr4.4:28310475-28310494 | MS.gene56080:intron | 50.0% | |
| AGCACAAGTCTTTCCTCACC+AGG | + | chr4.4:28311295-28311314 | None:intergenic | 50.0% | |
| ATTGACAGCAACCTGGCATC+GGG | - | chr4.4:28310413-28310432 | MS.gene56080:intron | 50.0% | |
| CACAATCCCAGTCCACCAAA+AGG | + | chr4.4:28309330-28309349 | None:intergenic | 50.0% | |
| CCACACAGGTAACAGCATTC+GGG | + | chr4.4:28309704-28309723 | None:intergenic | 50.0% | |
| CCACTAAGGATGAACGACAC+AGG | + | chr4.4:28309839-28309858 | None:intergenic | 50.0% | |
| CCCTGTGCATGTTTGTGGTT+CGG | + | chr4.4:28310479-28310498 | None:intergenic | 50.0% | |
| CCGAACCACAAACATGCACA+GGG | - | chr4.4:28310476-28310495 | MS.gene56080:intron | 50.0% | |
| GAGATCCAGGAATTGCCCAA+AGG | + | chr4.4:28310543-28310562 | None:intergenic | 50.0% | |
| GGAAAACGCGTGCAAGATAG+TGG | - | chr4.4:28309198-28309217 | MS.gene56080:intron | 50.0% | |
| GGGTCTTTGGTTGTCATCCA+TGG | - | chr4.4:28310783-28310802 | MS.gene56080:intron | 50.0% | |
| TTCAAAGCTGCCATCCACAC+AGG | + | chr4.4:28310921-28310940 | None:intergenic | 50.0% | |
| ! | CCCTTGTAGTTGACTTCACC+TGG | - | chr4.4:28311274-28311293 | MS.gene56080:intron | 50.0% |
| ! | CCTGTGTCGTTCATCCTTAG+TGG | - | chr4.4:28309836-28309855 | MS.gene56080:intron | 50.0% |
| ! | GTAGTTGACTTCACCTGGTG+AGG | - | chr4.4:28311279-28311298 | MS.gene56080:intron | 50.0% |
| ! | GTCAAAACAGGTTGGAGGCT+TGG | + | chr4.4:28310118-28310137 | None:intergenic | 50.0% |
| !! | GTTTTTCTGGAGGGGAGAAG+GGG | - | chr4.4:28309611-28309630 | MS.gene56080:intron | 50.0% |
| !!! | AGCCTCCAACCTGTTTTGAC+TGG | - | chr4.4:28310118-28310137 | MS.gene56080:intron | 50.0% |
| CACAAACATGCACAGGGCTG+TGG | - | chr4.4:28310482-28310501 | MS.gene56080:intron | 55.0% | |
| CACAGCCCTGTGCATGTTTG+TGG | + | chr4.4:28310484-28310503 | None:intergenic | 55.0% | |
| CACAGGTAACAGCATTCGGG+TGG | + | chr4.4:28309701-28309720 | None:intergenic | 55.0% | |
| CAGGTAACAGCATTCGGGTG+GGG | + | chr4.4:28309699-28309718 | None:intergenic | 55.0% | |
| CCCGAATGCTGTTACCTGTG+TGG | - | chr4.4:28309701-28309720 | MS.gene56080:intron | 55.0% | |
| GGTGGAGAAAATAGAGGCGG+TGG | + | chr4.4:28308533-28308552 | None:intergenic | 55.0% | |
| GGTTGCCTTTGGGCAATTCC+TGG | - | chr4.4:28310535-28310554 | MS.gene56080:intron | 55.0% | |
| TTGACAGCAACCTGGCATCG+GGG | - | chr4.4:28310414-28310433 | MS.gene56080:intron | 55.0% | |
| AACATGCACAGGGCTGTGGC+TGG | - | chr4.4:28310486-28310505 | MS.gene56080:intron | 60.0% | |
| ACTACTTCACCCCCGATGCC+AGG | + | chr4.4:28310427-28310446 | None:intergenic | 60.0% | |
| GGGTGAAGTAGTGCCTCACC+AGG | - | chr4.4:28310435-28310454 | MS.gene56080:intron | 60.0% | |
| ! | TGACAGCAACCTGGCATCGG+GGG | - | chr4.4:28310415-28310434 | MS.gene56080:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 28308310 | 28311736 | 28308310 | ID=MS.gene56080 |
| chr4.4 | mRNA | 28308310 | 28311736 | 28308310 | ID=MS.gene56080.t1;Parent=MS.gene56080 |
| chr4.4 | exon | 28311691 | 28311736 | 28311691 | ID=MS.gene56080.t1.exon1;Parent=MS.gene56080.t1 |
| chr4.4 | CDS | 28311691 | 28311736 | 28311691 | ID=cds.MS.gene56080.t1;Parent=MS.gene56080.t1 |
| chr4.4 | exon | 28311485 | 28311609 | 28311485 | ID=MS.gene56080.t1.exon2;Parent=MS.gene56080.t1 |
| chr4.4 | CDS | 28311485 | 28311609 | 28311485 | ID=cds.MS.gene56080.t1;Parent=MS.gene56080.t1 |
| chr4.4 | exon | 28311331 | 28311391 | 28311331 | ID=MS.gene56080.t1.exon3;Parent=MS.gene56080.t1 |
| chr4.4 | CDS | 28311331 | 28311391 | 28311331 | ID=cds.MS.gene56080.t1;Parent=MS.gene56080.t1 |
| chr4.4 | exon | 28311162 | 28311230 | 28311162 | ID=MS.gene56080.t1.exon4;Parent=MS.gene56080.t1 |
| chr4.4 | CDS | 28311162 | 28311230 | 28311162 | ID=cds.MS.gene56080.t1;Parent=MS.gene56080.t1 |
| chr4.4 | exon | 28310562 | 28310680 | 28310562 | ID=MS.gene56080.t1.exon5;Parent=MS.gene56080.t1 |
| chr4.4 | CDS | 28310562 | 28310680 | 28310562 | ID=cds.MS.gene56080.t1;Parent=MS.gene56080.t1 |
| chr4.4 | exon | 28309478 | 28309625 | 28309478 | ID=MS.gene56080.t1.exon6;Parent=MS.gene56080.t1 |
| chr4.4 | CDS | 28309478 | 28309625 | 28309478 | ID=cds.MS.gene56080.t1;Parent=MS.gene56080.t1 |
| chr4.4 | exon | 28309223 | 28309367 | 28309223 | ID=MS.gene56080.t1.exon7;Parent=MS.gene56080.t1 |
| chr4.4 | CDS | 28309223 | 28309367 | 28309223 | ID=cds.MS.gene56080.t1;Parent=MS.gene56080.t1 |
| chr4.4 | exon | 28309026 | 28309112 | 28309026 | ID=MS.gene56080.t1.exon8;Parent=MS.gene56080.t1 |
| chr4.4 | CDS | 28309026 | 28309112 | 28309026 | ID=cds.MS.gene56080.t1;Parent=MS.gene56080.t1 |
| chr4.4 | exon | 28308310 | 28308352 | 28308310 | ID=MS.gene56080.t1.exon9;Parent=MS.gene56080.t1 |
| chr4.4 | CDS | 28308310 | 28308352 | 28308310 | ID=cds.MS.gene56080.t1;Parent=MS.gene56080.t1 |
| Gene Sequence |
| Protein sequence |
