Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56249.t1 | XP_003598253.1 | 95.4 | 238 | 11 | 0 | 1 | 238 | 254 | 491 | 6.60E-132 | 479.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56249.t1 | B8N151 | 28.3 | 269 | 134 | 10 | 1 | 221 | 138 | 395 | 2.6e-20 | 100.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56249.t1 | G7IYK7 | 95.4 | 238 | 11 | 0 | 1 | 238 | 254 | 491 | 4.8e-132 | 479.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050496 | MS.gene56249 | -0.800757 | 1.24E-48 | -1.69E-46 |
| MS.gene05104 | MS.gene56249 | 0.810795 | 9.65E-51 | -1.69E-46 |
| MS.gene051138 | MS.gene56249 | 0.834691 | 2.59E-56 | -1.69E-46 |
| MS.gene053420 | MS.gene56249 | 0.800613 | 1.33E-48 | -1.69E-46 |
| MS.gene05589 | MS.gene56249 | -0.80447 | 2.13E-49 | -1.69E-46 |
| MS.gene056856 | MS.gene56249 | 0.814991 | 1.16E-51 | -1.69E-46 |
| MS.gene058099 | MS.gene56249 | 0.807445 | 5.04E-50 | -1.69E-46 |
| MS.gene058171 | MS.gene56249 | 0.821287 | 4.37E-53 | -1.69E-46 |
| MS.gene058173 | MS.gene56249 | 0.811845 | 5.71E-51 | -1.69E-46 |
| MS.gene058175 | MS.gene56249 | 0.823751 | 1.17E-53 | -1.69E-46 |
| MS.gene058269 | MS.gene56249 | 0.802013 | 6.86E-49 | -1.69E-46 |
| MS.gene058334 | MS.gene56249 | 0.809762 | 1.61E-50 | -1.69E-46 |
| MS.gene059045 | MS.gene56249 | 0.838992 | 2.07E-57 | -1.69E-46 |
| MS.gene059865 | MS.gene56249 | -0.804152 | 2.48E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56249.t1 | MTR_3g009020 | 95.378 | 238 | 11 | 0 | 1 | 238 | 254 | 491 | 1.05e-169 | 477 |
| MS.gene56249.t1 | MTR_3g009030 | 83.636 | 220 | 36 | 0 | 1 | 220 | 278 | 497 | 1.33e-136 | 393 |
| MS.gene56249.t1 | MTR_3g009010 | 80.909 | 220 | 42 | 0 | 1 | 220 | 343 | 562 | 1.74e-129 | 377 |
| MS.gene56249.t1 | MTR_3g008960 | 78.182 | 220 | 48 | 0 | 1 | 220 | 270 | 489 | 6.97e-126 | 365 |
| MS.gene56249.t1 | MTR_8g091310 | 66.063 | 221 | 74 | 1 | 1 | 220 | 286 | 506 | 3.99e-104 | 310 |
| MS.gene56249.t1 | MTR_5g062190 | 53.982 | 226 | 98 | 4 | 1 | 220 | 282 | 507 | 4.64e-79 | 246 |
| MS.gene56249.t1 | MTR_5g062290 | 51.327 | 226 | 104 | 4 | 1 | 220 | 280 | 505 | 1.44e-72 | 229 |
| MS.gene56249.t1 | MTR_3g086750 | 45.133 | 226 | 118 | 4 | 1 | 220 | 280 | 505 | 8.33e-59 | 194 |
| MS.gene56249.t1 | MTR_4g035760 | 46.528 | 144 | 71 | 2 | 83 | 220 | 36 | 179 | 1.04e-41 | 140 |
| MS.gene56249.t1 | MTR_5g061980 | 47.826 | 92 | 46 | 2 | 76 | 165 | 219 | 310 | 2.31e-17 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 50 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCATTACTACAATATGTTT+TGG | 0.227561 | 3.3:-4546834 | MS.gene56249:CDS |
| CAACATTTGGATGGGCTTAT+TGG | 0.274922 | 3.3:-4546288 | MS.gene56249:CDS |
| ATTGAGCTTGGGCAAAGTTT+TGG | 0.283062 | 3.3:+4546329 | None:intergenic |
| GCAATTGAAGGTTCTCAAAA+TGG | 0.284192 | 3.3:-4547500 | MS.gene56249:CDS |
| AAACTTTGCCCAAGCTCAAT+TGG | 0.353354 | 3.3:-4546326 | MS.gene56249:CDS |
| GCTCTTCTCTCATTTGTTAG+TGG | 0.361357 | 3.3:-4546880 | MS.gene56249:CDS |
| AATTAATCACAGCGACTGTC+TGG | 0.361757 | 3.3:+4547420 | None:intergenic |
| TTGCTTAGACGCACTTTGTA+TGG | 0.372643 | 3.3:+4546357 | None:intergenic |
| ACGATTAAACTGGCATTTGT+AGG | 0.378607 | 3.3:+4546264 | None:intergenic |
| TATGGTAATAAACCAAGTTT+AGG | 0.379061 | 3.3:-4547045 | MS.gene56249:CDS |
| CAAAATGGCAATGAACATAG+TGG | 0.392126 | 3.3:-4547485 | MS.gene56249:CDS |
| GTGTATTCTCGGGCAACATT+TGG | 0.393337 | 3.3:-4546301 | MS.gene56249:CDS |
| CTCAATTGGATGTGTATTCT+CGG | 0.396743 | 3.3:-4546312 | MS.gene56249:CDS |
| CAAGAGATGGATATATAGAA+TGG | 0.417101 | 3.3:-4547460 | MS.gene56249:CDS |
| TAGTCTCAAGAAGTATTATA+AGG | 0.418460 | 3.3:-4546980 | MS.gene56249:CDS |
| AAGAGATGGATATATAGAAT+GGG | 0.434894 | 3.3:-4547459 | MS.gene56249:CDS |
| AGCTCTATTCCTCCTAAACT+TGG | 0.449256 | 3.3:+4547033 | None:intergenic |
| TTCTCGGGCAACATTTGGAT+GGG | 0.450046 | 3.3:-4546296 | MS.gene56249:CDS |
| TGAGACTCCAACGATTAAAC+TGG | 0.451572 | 3.3:+4546254 | None:intergenic |
| GAAAGAGCCTCAGATCTTGC+TGG | 0.453188 | 3.3:-4546760 | MS.gene56249:CDS |
| GACATAATCACATAAGCCTC+TGG | 0.478424 | 3.3:+4546928 | None:intergenic |
| TGTGATTATGTCAAATCCAT+TGG | 0.497659 | 3.3:-4546917 | MS.gene56249:CDS |
| GTGGACTTGCATGCAATTGA+AGG | 0.498572 | 3.3:-4547512 | MS.gene56249:CDS |
| ATTCTCGGGCAACATTTGGA+TGG | 0.503691 | 3.3:-4546297 | MS.gene56249:CDS |
| AATACACATCCAATTGAGCT+TGG | 0.517212 | 3.3:+4546317 | None:intergenic |
| ATTAATCACAGCGACTGTCT+GGG | 0.528222 | 3.3:+4547421 | None:intergenic |
| TAGGGGAATGGACGGGTGAG+TGG | 0.529808 | 3.3:-4546381 | MS.gene56249:CDS |
| ATACACATCCAATTGAGCTT+GGG | 0.532963 | 3.3:+4546318 | None:intergenic |
| CTCAAGTGGATGATCGAGAA+TGG | 0.534717 | 3.3:-4546235 | MS.gene56249:CDS |
| GGTAATAAACCAAGTTTAGG+AGG | 0.535992 | 3.3:-4547042 | MS.gene56249:CDS |
| GCTTTAGAATCTCCATCCAA+TGG | 0.542610 | 3.3:+4546901 | None:intergenic |
| GAACATAGTGGGACAAGAGA+TGG | 0.543354 | 3.3:-4547473 | MS.gene56249:CDS |
| ACCAACAGATAGCTTTCGAC+AGG | 0.544967 | 3.3:-4546185 | MS.gene56249:CDS |
| TCAATTGGATGTGTATTCTC+GGG | 0.550495 | 3.3:-4546311 | MS.gene56249:CDS |
| ACAAATGCCAGTTTAATCGT+TGG | 0.551584 | 3.3:-4546261 | MS.gene56249:CDS |
| CCATGGGATGAAAGTGATTG+TGG | 0.555733 | 3.3:-4547531 | None:intergenic |
| TCCTGTCGAAAGCTATCTGT+TGG | 0.560585 | 3.3:+4546184 | None:intergenic |
| TTAATCGTTGGAGTCTCAAG+TGG | 0.586204 | 3.3:-4546249 | MS.gene56249:CDS |
| CTATCAAGATTGACACCTTG+TGG | 0.598476 | 3.3:+4547000 | None:intergenic |
| ATTATGTCAAATCCATTGGA+TGG | 0.603936 | 3.3:-4546913 | MS.gene56249:CDS |
| TTAATCACAGCGACTGTCTG+GGG | 0.606862 | 3.3:+4547422 | None:intergenic |
| TGATTAATTTCTTAGCACAA+AGG | 0.607927 | 3.3:-4547406 | MS.gene56249:intron |
| AAAATGGCAATGAACATAGT+GGG | 0.608116 | 3.3:-4547484 | MS.gene56249:CDS |
| TATTGTAGTAATGCACATCA+AGG | 0.609097 | 3.3:+4546842 | None:intergenic |
| ATAGCTTTCGACAGGATGTG+AGG | 0.613651 | 3.3:-4546177 | MS.gene56249:CDS |
| TAGCTTTCGACAGGATGTGA+GGG | 0.624203 | 3.3:-4546176 | MS.gene56249:CDS |
| AGAGATGGATATATAGAATG+GGG | 0.625469 | 3.3:-4547458 | MS.gene56249:CDS |
| AGATACACCAGCAAGATCTG+AGG | 0.672584 | 3.3:+4546753 | None:intergenic |
| TGTGAGAAAATACAAGCCAG+AGG | 0.723983 | 3.3:-4546944 | MS.gene56249:CDS |
| GAGCTGATGAATGAACCACA+AGG | 0.784741 | 3.3:-4547015 | MS.gene56249:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCTATTTCTAATCAATTT+GGG | - | chr3.3:4546519-4546538 | MS.gene56249:intron | 15.0% |
| !!! | ATATGTTTTTTCTTTTTGTA+GGG | - | chr3.3:4547290-4547309 | MS.gene56249:intron | 15.0% |
| !!! | TAATCTATTTCTAATCAATT+TGG | - | chr3.3:4546518-4546537 | MS.gene56249:intron | 15.0% |
| !!! | TATATGTTTTTTCTTTTTGT+AGG | - | chr3.3:4547289-4547308 | MS.gene56249:intron | 15.0% |
| !! | AACTCATCCATATTATATAT+CGG | - | chr3.3:4547259-4547278 | MS.gene56249:intron | 20.0% |
| !! | ACATATATGAAATATGACAA+AGG | - | chr3.3:4547054-4547073 | MS.gene56249:intron | 20.0% |
| !! | ATCTAATTTCTTCTCTATAT+TGG | - | chr3.3:4546324-4546343 | MS.gene56249:CDS | 20.0% |
| !! | ATGAGTTAGTATATATTTCA+TGG | + | chr3.3:4547246-4547265 | None:intergenic | 20.0% |
| !! | CATATAGATACCAATAAAAT+TGG | + | chr3.3:4547005-4547024 | None:intergenic | 20.0% |
| !! | CATGTATAATTCAATTACTT+GGG | + | chr3.3:4546601-4546620 | None:intergenic | 20.0% |
| !! | TATCAAATATCATATATTCC+TGG | + | chr3.3:4546567-4546586 | None:intergenic | 20.0% |
| !! | TATTGGAATTTAAGTATAAG+TGG | - | chr3.3:4546341-4546360 | MS.gene56249:CDS | 20.0% |
| !! | TGAGTTAGTATATATTTCAT+GGG | + | chr3.3:4547245-4547264 | None:intergenic | 20.0% |
| !!! | AAATTGATAATATGTGAAAG+AGG | + | chr3.3:4546491-4546510 | None:intergenic | 20.0% |
| !!! | TATGTTTTTTCTTTTTGTAG+GGG | - | chr3.3:4547291-4547310 | MS.gene56249:intron | 20.0% |
| ! | AAGAGATGGATATATAGAAT+GGG | - | chr3.3:4546230-4546249 | MS.gene56249:CDS | 25.0% |
| ! | ACTCATCCATATTATATATC+GGG | - | chr3.3:4547260-4547279 | MS.gene56249:intron | 25.0% |
| ! | AGATACCAATAAAATTGGTT+AGG | + | chr3.3:4547000-4547019 | None:intergenic | 25.0% |
| ! | CAATAAAATTGGTTAGGATT+TGG | + | chr3.3:4546994-4547013 | None:intergenic | 25.0% |
| ! | GCATGTATAATTCAATTACT+TGG | + | chr3.3:4546602-4546621 | None:intergenic | 25.0% |
| ! | TATGGTAATAAACCAAGTTT+AGG | - | chr3.3:4546644-4546663 | MS.gene56249:intron | 25.0% |
| ! | TGATTAATTTCTTAGCACAA+AGG | - | chr3.3:4546283-4546302 | MS.gene56249:CDS | 25.0% |
| !! | CAAATCCTAACCAATTTTAT+TGG | - | chr3.3:4546992-4547011 | MS.gene56249:CDS | 25.0% |
| !! | GCATTACTACAATATGTTTT+GGG | - | chr3.3:4546856-4546875 | MS.gene56249:CDS | 25.0% |
| !! | TGCATTACTACAATATGTTT+TGG | - | chr3.3:4546855-4546874 | MS.gene56249:CDS | 25.0% |
| !!! | TAGTCTCAAGAAGTATTATA+AGG | - | chr3.3:4546709-4546728 | MS.gene56249:intron | 25.0% |
| AAAATGGCAATGAACATAGT+GGG | - | chr3.3:4546205-4546224 | MS.gene56249:CDS | 30.0% | |
| AGAGATGGATATATAGAATG+GGG | - | chr3.3:4546231-4546250 | MS.gene56249:CDS | 30.0% | |
| ATTATGTCAAATCCATTGGA+TGG | - | chr3.3:4546776-4546795 | MS.gene56249:CDS | 30.0% | |
| CAAGAGATGGATATATAGAA+TGG | - | chr3.3:4546229-4546248 | MS.gene56249:CDS | 30.0% | |
| CTCATCCATATTATATATCG+GGG | - | chr3.3:4547261-4547280 | MS.gene56249:intron | 30.0% | |
| GTATCTATATGTGTGTGATA+GGG | - | chr3.3:4547014-4547033 | MS.gene56249:CDS | 30.0% | |
| GTTATCCCCGATATATAATA+TGG | + | chr3.3:4547269-4547288 | None:intergenic | 30.0% | |
| TATTGTAGTAATGCACATCA+AGG | + | chr3.3:4546850-4546869 | None:intergenic | 30.0% | |
| TGGAATTTAAGTATAAGTGG+TGG | - | chr3.3:4546344-4546363 | MS.gene56249:CDS | 30.0% | |
| TGTGATTATGTCAAATCCAT+TGG | - | chr3.3:4546772-4546791 | MS.gene56249:CDS | 30.0% | |
| TTGCTTAACATGTGTCATAA+GGG | - | chr3.3:4547204-4547223 | MS.gene56249:intron | 30.0% | |
| ! | TTTTTCTTTTTGTAGGGGAA+TGG | - | chr3.3:4547296-4547315 | MS.gene56249:intron | 30.0% |
| !! | ACAAATGCTCTTACTTTTGT+TGG | - | chr3.3:4546962-4546981 | MS.gene56249:CDS | 30.0% |
| !! | ATTGAATTTGTTGACAGGTA+TGG | - | chr3.3:4546626-4546645 | MS.gene56249:intron | 30.0% |
| !! | CATGAATTGAATTTGTTGAC+AGG | - | chr3.3:4546621-4546640 | MS.gene56249:intron | 30.0% |
| !!! | ATGTTTTGGGACAAATTCAA+TGG | - | chr3.3:4546869-4546888 | MS.gene56249:CDS | 30.0% |
| AATACACATCCAATTGAGCT+TGG | + | chr3.3:4547375-4547394 | None:intergenic | 35.0% | |
| ACAAATGCCAGTTTAATCGT+TGG | - | chr3.3:4547428-4547447 | MS.gene56249:CDS | 35.0% | |
| ACGATTAAACTGGCATTTGT+AGG | + | chr3.3:4547428-4547447 | None:intergenic | 35.0% | |
| ATACACATCCAATTGAGCTT+GGG | + | chr3.3:4547374-4547393 | None:intergenic | 35.0% | |
| CAAAAAGAGCAACTTTGCAT+TGG | + | chr3.3:4547182-4547201 | None:intergenic | 35.0% | |
| CAAAATGGCAATGAACATAG+TGG | - | chr3.3:4546204-4546223 | MS.gene56249:CDS | 35.0% | |
| CTCAATTGGATGTGTATTCT+CGG | - | chr3.3:4547377-4547396 | MS.gene56249:intron | 35.0% | |
| GCAATTGAAGGTTCTCAAAA+TGG | - | chr3.3:4546189-4546208 | MS.gene56249:CDS | 35.0% | |
| GGTAATAAACCAAGTTTAGG+AGG | - | chr3.3:4546647-4546666 | MS.gene56249:intron | 35.0% | |
| GGTATCTATATGTGTGTGAT+AGG | - | chr3.3:4547013-4547032 | MS.gene56249:CDS | 35.0% | |
| GTTGCTTAACATGTGTCATA+AGG | - | chr3.3:4547203-4547222 | MS.gene56249:intron | 35.0% | |
| TCAATTGGATGTGTATTCTC+GGG | - | chr3.3:4547378-4547397 | MS.gene56249:intron | 35.0% | |
| AAACTTTGCCCAAGCTCAAT+TGG | - | chr3.3:4547363-4547382 | MS.gene56249:intron | 40.0% | |
| AATTAATCACAGCGACTGTC+TGG | + | chr3.3:4546272-4546291 | None:intergenic | 40.0% | |
| AGCTCTATTCCTCCTAAACT+TGG | + | chr3.3:4546659-4546678 | None:intergenic | 40.0% | |
| ATTAATCACAGCGACTGTCT+GGG | + | chr3.3:4546271-4546290 | None:intergenic | 40.0% | |
| CTATCAAGATTGACACCTTG+TGG | + | chr3.3:4546692-4546711 | None:intergenic | 40.0% | |
| GACATAATCACATAAGCCTC+TGG | + | chr3.3:4546764-4546783 | None:intergenic | 40.0% | |
| TCCACTCACACTTAAATTCC+AGG | - | chr3.3:4546546-4546565 | MS.gene56249:intron | 40.0% | |
| TCCTGGAATTTAAGTGTGAG+TGG | + | chr3.3:4546550-4546569 | None:intergenic | 40.0% | |
| TGAGACTCCAACGATTAAAC+TGG | + | chr3.3:4547438-4547457 | None:intergenic | 40.0% | |
| TGTGAGAAAATACAAGCCAG+AGG | - | chr3.3:4546745-4546764 | MS.gene56249:CDS | 40.0% | |
| TTAATCGTTGGAGTCTCAAG+TGG | - | chr3.3:4547440-4547459 | MS.gene56249:CDS | 40.0% | |
| TTGCTTAGACGCACTTTGTA+TGG | + | chr3.3:4547335-4547354 | None:intergenic | 40.0% | |
| ! | AGTGGTGGTTAGTCACATAT+TGG | - | chr3.3:4546359-4546378 | MS.gene56249:CDS | 40.0% |
| ! | ATTGAGCTTGGGCAAAGTTT+TGG | + | chr3.3:4547363-4547382 | None:intergenic | 40.0% |
| ! | CAACATTTGGATGGGCTTAT+TGG | - | chr3.3:4547401-4547420 | MS.gene56249:intron | 40.0% |
| ! | GCTCTTCTCTCATTTGTTAG+TGG | - | chr3.3:4546809-4546828 | MS.gene56249:CDS | 40.0% |
| ! | TCTTTTTGTAGGGGAATGGA+CGG | - | chr3.3:4547300-4547319 | MS.gene56249:intron | 40.0% |
| !! | GCTTTAGAATCTCCATCCAA+TGG | + | chr3.3:4546791-4546810 | None:intergenic | 40.0% |
| ACCAACAGATAGCTTTCGAC+AGG | - | chr3.3:4547504-4547523 | MS.gene56249:CDS | 45.0% | |
| AGATACACCAGCAAGATCTG+AGG | + | chr3.3:4546939-4546958 | None:intergenic | 45.0% | |
| ATAGCTTTCGACAGGATGTG+AGG | - | chr3.3:4547512-4547531 | MS.gene56249:CDS | 45.0% | |
| ATTCTCGGGCAACATTTGGA+TGG | - | chr3.3:4547392-4547411 | MS.gene56249:intron | 45.0% | |
| CTCAAGTGGATGATCGAGAA+TGG | - | chr3.3:4547454-4547473 | MS.gene56249:CDS | 45.0% | |
| GAGCTGATGAATGAACCACA+AGG | - | chr3.3:4546674-4546693 | MS.gene56249:intron | 45.0% | |
| GTGGACTTGCATGCAATTGA+AGG | - | chr3.3:4546177-4546196 | MS.gene56249:CDS | 45.0% | |
| GTGTATTCTCGGGCAACATT+TGG | - | chr3.3:4547388-4547407 | MS.gene56249:intron | 45.0% | |
| TAGCTTTCGACAGGATGTGA+GGG | - | chr3.3:4547513-4547532 | MS.gene56249:CDS | 45.0% | |
| TCCTGTCGAAAGCTATCTGT+TGG | + | chr3.3:4547508-4547527 | None:intergenic | 45.0% | |
| TCCTTAACATGTGCCCTTGA+AGG | + | chr3.3:4547090-4547109 | None:intergenic | 45.0% | |
| TTAATCACAGCGACTGTCTG+GGG | + | chr3.3:4546270-4546289 | None:intergenic | 45.0% | |
| TTCTCGGGCAACATTTGGAT+GGG | - | chr3.3:4547393-4547412 | MS.gene56249:intron | 45.0% | |
| ! | AAGGCTAACTTGTGCCTTCA+AGG | - | chr3.3:4547073-4547092 | MS.gene56249:intron | 45.0% |
| ! | AGGCTAACTTGTGCCTTCAA+GGG | - | chr3.3:4547074-4547093 | MS.gene56249:intron | 45.0% |
| ! | CTTCTGACGGACATACTTGT+AGG | + | chr3.3:4546429-4546448 | None:intergenic | 45.0% |
| ! | CTTTTTGTAGGGGAATGGAC+GGG | - | chr3.3:4547301-4547320 | MS.gene56249:intron | 45.0% |
| ! | GAACATAGTGGGACAAGAGA+TGG | - | chr3.3:4546216-4546235 | MS.gene56249:CDS | 45.0% |
| CTTACTCGCTACGCTTCTGA+CGG | + | chr3.3:4546442-4546461 | None:intergenic | 50.0% | |
| GAAAGAGCCTCAGATCTTGC+TGG | - | chr3.3:4546929-4546948 | MS.gene56249:CDS | 50.0% | |
| ! | GCCTTCAAGGGCACATGTTA+AGG | - | chr3.3:4547086-4547105 | MS.gene56249:intron | 50.0% |
| TAGGGGAATGGACGGGTGAG+TGG | - | chr3.3:4547308-4547327 | MS.gene56249:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 4546165 | 4547546 | 4546165 | ID=MS.gene56249 |
| chr3.3 | mRNA | 4546165 | 4547546 | 4546165 | ID=MS.gene56249.t1;Parent=MS.gene56249 |
| chr3.3 | exon | 4547407 | 4547546 | 4547407 | ID=MS.gene56249.t1.exon1;Parent=MS.gene56249.t1 |
| chr3.3 | CDS | 4547407 | 4547546 | 4547407 | ID=cds.MS.gene56249.t1;Parent=MS.gene56249.t1 |
| chr3.3 | exon | 4546728 | 4547068 | 4546728 | ID=MS.gene56249.t1.exon2;Parent=MS.gene56249.t1 |
| chr3.3 | CDS | 4546728 | 4547068 | 4546728 | ID=cds.MS.gene56249.t1;Parent=MS.gene56249.t1 |
| chr3.3 | exon | 4546165 | 4546400 | 4546165 | ID=MS.gene56249.t1.exon3;Parent=MS.gene56249.t1 |
| chr3.3 | CDS | 4546165 | 4546400 | 4546165 | ID=cds.MS.gene56249.t1;Parent=MS.gene56249.t1 |
| Gene Sequence |
| Protein sequence |
