Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56411.t1 | XP_003607898.1 | 98.3 | 180 | 3 | 0 | 2 | 181 | 3 | 182 | 3.50E-93 | 350.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56411.t1 | P42856 | 69.3 | 127 | 39 | 0 | 55 | 181 | 2 | 128 | 8.6e-48 | 191.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56411.t1 | Q2MGQ9 | 98.3 | 180 | 3 | 0 | 2 | 181 | 3 | 182 | 2.5e-93 | 350.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052253 | MS.gene56411 | 0.813009 | 3.18E-51 | -1.69E-46 |
| MS.gene052322 | MS.gene56411 | 0.800602 | 1.33E-48 | -1.69E-46 |
| MS.gene052982 | MS.gene56411 | 0.814121 | 1.81E-51 | -1.69E-46 |
| MS.gene053209 | MS.gene56411 | 0.804641 | 1.96E-49 | -1.69E-46 |
| MS.gene057207 | MS.gene56411 | 0.812907 | 3.35E-51 | -1.69E-46 |
| MS.gene058082 | MS.gene56411 | 0.823481 | 1.35E-53 | -1.69E-46 |
| MS.gene058233 | MS.gene56411 | 0.804741 | 1.87E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56411.t1 | MTR_4g084190 | 98.333 | 180 | 3 | 0 | 2 | 181 | 3 | 182 | 5.52e-131 | 364 |
| MS.gene56411.t1 | MTR_4g084190 | 94.149 | 188 | 3 | 1 | 2 | 181 | 3 | 190 | 4.85e-128 | 357 |
| MS.gene56411.t1 | MTR_4g084190 | 97.479 | 119 | 3 | 0 | 2 | 120 | 3 | 121 | 1.16e-80 | 235 |
| MS.gene56411.t1 | MTR_6g026810 | 67.647 | 136 | 42 | 1 | 46 | 181 | 20 | 153 | 3.39e-67 | 202 |
| MS.gene56411.t1 | MTR_7g088160 | 53.521 | 71 | 31 | 2 | 53 | 121 | 4 | 74 | 4.15e-17 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56411.t1 | AT1G31160 | 70.225 | 178 | 48 | 2 | 9 | 181 | 10 | 187 | 4.99e-74 | 221 |
| MS.gene56411.t1 | AT3G56490 | 65.942 | 138 | 43 | 2 | 44 | 181 | 14 | 147 | 6.29e-65 | 196 |
| MS.gene56411.t1 | AT1G31160 | 64.103 | 117 | 37 | 2 | 9 | 120 | 10 | 126 | 8.40e-31 | 109 |
Find 46 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAATCCATCTCTGAATTT+TGG | 0.116683 | 4.4:+28697740 | None:intergenic |
| TTCTTTCTCGGCTACTATTT+TGG | 0.146644 | 4.4:+28697438 | None:intergenic |
| CGGTTCCTTTCTCTCTTCTT+AGG | 0.195364 | 4.4:-28699341 | MS.gene56411:intron |
| TTGTTCATTGTTTGCAGCGC+TGG | 0.260695 | 4.4:+28698170 | None:intergenic |
| TGCTAGACATGGGGAGATAC+TGG | 0.286862 | 4.4:-28697479 | MS.gene56411:CDS |
| TTTGCAGCGCTGGCGCTAAA+TGG | 0.329280 | 4.4:+28698180 | None:intergenic |
| AGCATTAACAGCAGCTGCTT+TGG | 0.346160 | 4.4:+28698140 | None:intergenic |
| ATTTGACAAGATCATAAATA+AGG | 0.353101 | 4.4:-28697852 | MS.gene56411:CDS |
| ATCAGCGATACCTTCTTTCT+CGG | 0.398686 | 4.4:+28697426 | None:intergenic |
| ACAGGCTCCGGTTCATGTTC+TGG | 0.408262 | 4.4:-28697768 | MS.gene56411:CDS |
| AGAGATGGATTAACAGAACT+TGG | 0.427247 | 4.4:-28697731 | MS.gene56411:CDS |
| TAGGTGGGAGACAGATGAAT+TGG | 0.451270 | 4.4:-28697235 | MS.gene56411:CDS |
| TCTTCATATACAATGCTTGA+AGG | 0.456414 | 4.4:+28697824 | None:intergenic |
| TGTCAGGAACTACTCACAAT+TGG | 0.465151 | 4.4:-28699248 | MS.gene56411:intron |
| AACTACCTGCGACATTGAAT+AGG | 0.476144 | 4.4:+28699166 | None:intergenic |
| GGAATGACCAGAACATGAAC+CGG | 0.476627 | 4.4:+28697761 | None:intergenic |
| TTGAATAGGAAGAACATAGT+TGG | 0.488856 | 4.4:+28699180 | None:intergenic |
| GTTTAATGTTGATACATTGT+TGG | 0.500439 | 4.4:+28698105 | None:intergenic |
| GGACATCAGTCCACAGGCTC+CGG | 0.500682 | 4.4:-28697780 | MS.gene56411:CDS |
| CATTGTATATGAAGATGAAA+AGG | 0.504283 | 4.4:-28697816 | MS.gene56411:CDS |
| TTCTTCCTATTCAATGTCGC+AGG | 0.509055 | 4.4:-28699171 | MS.gene56411:intron |
| CATCTGCACTTGCATGTCCT+AGG | 0.526980 | 4.4:-28697254 | MS.gene56411:CDS |
| CTTCATATACAATGCTTGAA+GGG | 0.529749 | 4.4:+28697825 | None:intergenic |
| GTCATTCCAAAATTCAGAGA+TGG | 0.530580 | 4.4:-28697746 | MS.gene56411:CDS |
| GCTGCTGTTAATGCTGATAG+TGG | 0.535440 | 4.4:-28698132 | MS.gene56411:CDS |
| TCTAGGAACCATGGCAGCTA+CGG | 0.537131 | 4.4:-28699361 | None:intergenic |
| CTGCACTTGCATGTCCTAGG+TGG | 0.538200 | 4.4:-28697251 | MS.gene56411:CDS |
| TGTTACCTAAGAAGAGAGAA+AGG | 0.545840 | 4.4:+28699336 | None:intergenic |
| AAAATAGTAGCCGAGAAAGA+AGG | 0.558191 | 4.4:-28697436 | MS.gene56411:CDS |
| GAGAAAGAAGGTATCGCTGA+TGG | 0.560682 | 4.4:-28697424 | MS.gene56411:CDS |
| GCTAGACATGGGGAGATACT+GGG | 0.563721 | 4.4:-28697478 | MS.gene56411:CDS |
| GAAAGGAACCGTAGCTGCCA+TGG | 0.566043 | 4.4:+28699353 | None:intergenic |
| TTTCAGGCTGATGCTAGACA+TGG | 0.567488 | 4.4:-28697490 | MS.gene56411:intron |
| AGTGCAGATGATACACACTT+TGG | 0.574867 | 4.4:+28697267 | None:intergenic |
| AGACAGATGAATTGGCCACC+TGG | 0.582532 | 4.4:-28697227 | MS.gene56411:CDS |
| GAGATGGATTAACAGAACTT+GGG | 0.585175 | 4.4:-28697730 | MS.gene56411:CDS |
| TGCACTTGCATGTCCTAGGT+GGG | 0.590386 | 4.4:-28697250 | MS.gene56411:CDS |
| TTCAGGCTGATGCTAGACAT+GGG | 0.598386 | 4.4:-28697489 | MS.gene56411:intron |
| GCAAGGATTGACATTCAACC+AGG | 0.602800 | 4.4:+28697209 | None:intergenic |
| GACTGATGTCCCGAAAAGCT+AGG | 0.605770 | 4.4:+28697792 | None:intergenic |
| AATTCATCTGTCTCCCACCT+AGG | 0.607223 | 4.4:+28697237 | None:intergenic |
| AGAACATGAACCGGAGCCTG+TGG | 0.626518 | 4.4:+28697770 | None:intergenic |
| TGGATTAACAGAACTTGGGA+AGG | 0.640825 | 4.4:-28697726 | MS.gene56411:intron |
| TCAGGCTGATGCTAGACATG+GGG | 0.647934 | 4.4:-28697488 | MS.gene56411:intron |
| TTTCGTGTTGTCATCAACAG+TGG | 0.675033 | 4.4:-28697400 | MS.gene56411:CDS |
| AGGATTGACATTCAACCAGG+TGG | 0.710391 | 4.4:+28697212 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACACTAATTTATTATATAA+GGG | - | chr4.4:28698928-28698947 | MS.gene56411:intron | 10.0% |
| !! | ACACTAATTTATTATATAAG+GGG | - | chr4.4:28698929-28698948 | MS.gene56411:intron | 15.0% |
| !! | GTACACTAATTTATTATATA+AGG | - | chr4.4:28698927-28698946 | MS.gene56411:intron | 15.0% |
| !! | AATATTGACATTGTAATTCT+AGG | + | chr4.4:28698628-28698647 | None:intergenic | 20.0% |
| !! | ACGAATAAAATAGAAACATT+GGG | + | chr4.4:28698694-28698713 | None:intergenic | 20.0% |
| !! | ATGAAGACAAAAAAGATAAT+GGG | + | chr4.4:28698300-28698319 | None:intergenic | 20.0% |
| !! | ATTTGACAAGATCATAAATA+AGG | - | chr4.4:28698722-28698741 | MS.gene56411:intron | 20.0% |
| !!! | AGATTTAAAGTTTAAATGCA+CGG | - | chr4.4:28698587-28698606 | MS.gene56411:intron | 20.0% |
| !!! | TGAATTTTTTATGATCTGTA+AGG | - | chr4.4:28697446-28697465 | MS.gene56411:CDS | 20.0% |
| !!! | TTTCCAACTTTTATTGTTTT+AGG | + | chr4.4:28697504-28697523 | None:intergenic | 20.0% |
| ! | AACAAGTTAACAACTTACTT+CGG | + | chr4.4:28697995-28698014 | None:intergenic | 25.0% |
| ! | AATAAGAAAAACGAGATTAG+TGG | + | chr4.4:28699279-28699298 | None:intergenic | 25.0% |
| ! | ACAATTTCCATTGCTAATAA+TGG | - | chr4.4:28699230-28699249 | MS.gene56411:CDS | 25.0% |
| ! | CATGAAGACAAAAAAGATAA+TGG | + | chr4.4:28698301-28698320 | None:intergenic | 25.0% |
| ! | CATTGTATATGAAGATGAAA+AGG | - | chr4.4:28698758-28698777 | MS.gene56411:intron | 25.0% |
| ! | CTCCAAGTTAAAATAAGTTA+TGG | - | chr4.4:28697729-28697748 | MS.gene56411:CDS | 25.0% |
| ! | GACGAATAAAATAGAAACAT+TGG | + | chr4.4:28698695-28698714 | None:intergenic | 25.0% |
| ! | GTTTAATGTTGATACATTGT+TGG | + | chr4.4:28698472-28698491 | None:intergenic | 25.0% |
| ! | TCTATATGTACATTAACTCA+AGG | - | chr4.4:28698884-28698903 | MS.gene56411:intron | 25.0% |
| ! | TGATTAGAAAAAAGACATAC+AGG | + | chr4.4:28699208-28699227 | None:intergenic | 25.0% |
| ! | TTAGTTCAAATGCGAAAAAT+TGG | - | chr4.4:28697881-28697900 | MS.gene56411:intron | 25.0% |
| !! | AAAAGAAAATCTGCATTTTC+AGG | - | chr4.4:28699068-28699087 | MS.gene56411:intron | 25.0% |
| !! | AAAGTAGCTAGAATTGATTT+CGG | + | chr4.4:28697814-28697833 | None:intergenic | 25.0% |
| !! | GTTGAACTTGAACAAATTTT+TGG | + | chr4.4:28698070-28698089 | None:intergenic | 25.0% |
| !!! | ATCTTTTTTGTCTTCATGTT+TGG | - | chr4.4:28698303-28698322 | MS.gene56411:intron | 25.0% |
| !!! | CTATTTCTAAAAATGTTGCT+TGG | - | chr4.4:28698125-28698144 | MS.gene56411:CDS | 25.0% |
| !!! | CTCCATAACTTATTTTAACT+TGG | + | chr4.4:28697734-28697753 | None:intergenic | 25.0% |
| !!! | GTTAGCTTTGAGTTATTATT+GGG | - | chr4.4:28699003-28699022 | MS.gene56411:intron | 25.0% |
| !!! | TAACAAGCTCTAAAAAAACT+TGG | + | chr4.4:28698238-28698257 | None:intergenic | 25.0% |
| !!! | TGGATAACCTTGTTTTTTAT+TGG | - | chr4.4:28697928-28697947 | MS.gene56411:intron | 25.0% |
| !!! | TGTTAGCTTTGAGTTATTAT+TGG | - | chr4.4:28699002-28699021 | MS.gene56411:intron | 25.0% |
| AGGTTATCCAAACATGAATT+AGG | + | chr4.4:28697918-28697937 | None:intergenic | 30.0% | |
| CTGTTAATACAATGCTTGAT+TGG | + | chr4.4:28698664-28698683 | None:intergenic | 30.0% | |
| CTTCATATACAATGCTTGAA+GGG | + | chr4.4:28698752-28698771 | None:intergenic | 30.0% | |
| GTGCCTAAAACAATAAAAGT+TGG | - | chr4.4:28697498-28697517 | MS.gene56411:intron | 30.0% | |
| GTGTGTAACTGCAAATATAA+AGG | - | chr4.4:28698195-28698214 | MS.gene56411:intron | 30.0% | |
| TACCATACCATTATTAGCAA+TGG | + | chr4.4:28699240-28699259 | None:intergenic | 30.0% | |
| TATAACTTCAAAACAGATCC+TGG | + | chr4.4:28698265-28698284 | None:intergenic | 30.0% | |
| TCTTCATATACAATGCTTGA+AGG | + | chr4.4:28698753-28698772 | None:intergenic | 30.0% | |
| TGGTGTGAATTCATGTTTAT+TGG | - | chr4.4:28698346-28698365 | MS.gene56411:intron | 30.0% | |
| TTCCATTGCTAATAATGGTA+TGG | - | chr4.4:28699235-28699254 | MS.gene56411:CDS | 30.0% | |
| TTCCTTACATAGTAGTAACA+GGG | - | chr4.4:28699030-28699049 | MS.gene56411:intron | 30.0% | |
| TTGAATAGGAAGAACATAGT+TGG | + | chr4.4:28697397-28697416 | None:intergenic | 30.0% | |
| TTTCCTTACATAGTAGTAAC+AGG | - | chr4.4:28699029-28699048 | MS.gene56411:intron | 30.0% | |
| ! | AAATTTGTTCAAGTTCAACC+AGG | - | chr4.4:28698071-28698090 | MS.gene56411:intron | 30.0% |
| ! | ACTCAAAAGATCCTTTTCTT+AGG | + | chr4.4:28698159-28698178 | None:intergenic | 30.0% |
| ! | GTTAATCCATCTCTGAATTT+TGG | + | chr4.4:28698837-28698856 | None:intergenic | 30.0% |
| ! | TCTAAAAATGTTGCTTGGAT+CGG | - | chr4.4:28698130-28698149 | MS.gene56411:CDS | 30.0% |
| ! | TCTTGCTTTGAATTATTGTC+AGG | - | chr4.4:28697310-28697329 | MS.gene56411:intron | 30.0% |
| !! | AGTAGCTTTAGTTATTGACT+TGG | - | chr4.4:28698326-28698345 | MS.gene56411:intron | 30.0% |
| !! | TTTAGAGCTTGTTAATAACC+AGG | - | chr4.4:28698244-28698263 | MS.gene56411:intron | 30.0% |
| AAAATAGTAGCCGAGAAAGA+AGG | - | chr4.4:28699138-28699157 | MS.gene56411:intron | 35.0% | |
| AACTTACTTCGGAGAAACAA+AGG | + | chr4.4:28697984-28698003 | None:intergenic | 35.0% | |
| AATCTGCGTTGTTAATGAGA+TGG | - | chr4.4:28697472-28697491 | MS.gene56411:CDS | 35.0% | |
| ATCTGCGTTGTTAATGAGAT+GGG | - | chr4.4:28697473-28697492 | MS.gene56411:CDS | 35.0% | |
| ATTAGACACGATGTAACTAC+TGG | - | chr4.4:28698015-28698034 | MS.gene56411:intron | 35.0% | |
| ATTGCATTTCAGTGCATGTT+TGG | - | chr4.4:28697570-28697589 | MS.gene56411:intron | 35.0% | |
| GTCATTCCAAAATTCAGAGA+TGG | - | chr4.4:28698828-28698847 | MS.gene56411:intron | 35.0% | |
| TCAGCTGCCAATAAAAAACA+AGG | + | chr4.4:28697938-28697957 | None:intergenic | 35.0% | |
| TCTGCAACCTAATTCATGTT+TGG | - | chr4.4:28697908-28697927 | MS.gene56411:intron | 35.0% | |
| TGTTACCTAAGAAGAGAGAA+AGG | + | chr4.4:28697241-28697260 | None:intergenic | 35.0% | |
| ! | GCATTTTGCTTACTTGTTTC+AGG | - | chr4.4:28698368-28698387 | MS.gene56411:intron | 35.0% |
| ! | TTCTTTCTCGGCTACTATTT+TGG | + | chr4.4:28699139-28699158 | None:intergenic | 35.0% |
| !! | AGAGATGGATTAACAGAACT+TGG | - | chr4.4:28698843-28698862 | MS.gene56411:intron | 35.0% |
| !! | ATGAAAAGGTCCTAGCTTTT+CGG | - | chr4.4:28698772-28698791 | MS.gene56411:intron | 35.0% |
| !! | CACATTTCTGAGACTATGTT+TGG | + | chr4.4:28697847-28697866 | None:intergenic | 35.0% |
| !! | CGGAGGTGTAAAATTGATTT+TGG | + | chr4.4:28697794-28697813 | None:intergenic | 35.0% |
| !! | CTCGTTTTTCTTATTCTGCT+AGG | - | chr4.4:28699284-28699303 | MS.gene56411:intron | 35.0% |
| !! | GAGATGGATTAACAGAACTT+GGG | - | chr4.4:28698844-28698863 | MS.gene56411:intron | 35.0% |
| !! | GCTCTAAAAAAACTTGGTGT+TGG | + | chr4.4:28698232-28698251 | None:intergenic | 35.0% |
| AACTACCTGCGACATTGAAT+AGG | + | chr4.4:28697411-28697430 | None:intergenic | 40.0% | |
| AGTGCAGATGATACACACTT+TGG | + | chr4.4:28699310-28699329 | None:intergenic | 40.0% | |
| ATCAGCGATACCTTCTTTCT+CGG | + | chr4.4:28699151-28699170 | None:intergenic | 40.0% | |
| CTCCCTGTTACTACTATGTA+AGG | + | chr4.4:28699035-28699054 | None:intergenic | 40.0% | |
| GAAAAAAGACATACAGGCAC+TGG | + | chr4.4:28699202-28699221 | None:intergenic | 40.0% | |
| TGGATCGGATACCTAAGAAA+AGG | - | chr4.4:28698145-28698164 | MS.gene56411:CDS | 40.0% | |
| TGGATTAACAGAACTTGGGA+AGG | - | chr4.4:28698848-28698867 | MS.gene56411:intron | 40.0% | |
| TGTCAGGAACTACTCACAAT+TGG | - | chr4.4:28697326-28697345 | MS.gene56411:intron | 40.0% | |
| TTCTTCCTATTCAATGTCGC+AGG | - | chr4.4:28697403-28697422 | MS.gene56411:CDS | 40.0% | |
| TTTCGTGTTGTCATCAACAG+TGG | - | chr4.4:28699174-28699193 | MS.gene56411:CDS | 40.0% | |
| ! | GTAGCTAGAATTGATTTCGG+AGG | + | chr4.4:28697811-28697830 | None:intergenic | 40.0% |
| !! | TGAAAAGGTCCTAGCTTTTC+GGG | - | chr4.4:28698773-28698792 | MS.gene56411:intron | 40.0% |
| !! | TTTCTCGGCTACTATTTTGG+CGG | + | chr4.4:28699136-28699155 | None:intergenic | 40.0% |
| !!! | TCAGTGCATGTTTGGTTTTG+AGG | - | chr4.4:28697578-28697597 | MS.gene56411:intron | 40.0% |
| AATTCATCTGTCTCCCACCT+AGG | + | chr4.4:28699340-28699359 | None:intergenic | 45.0% | |
| AGCATTAACAGCAGCTGCTT+TGG | + | chr4.4:28698437-28698456 | None:intergenic | 45.0% | |
| CGGTTCCTTTCTCTCTTCTT+AGG | - | chr4.4:28697233-28697252 | MS.gene56411:CDS | 45.0% | |
| GCTGCTGTTAATGCTGATAG+TGG | - | chr4.4:28698442-28698461 | MS.gene56411:intron | 45.0% | |
| GGAATGACCAGAACATGAAC+CGG | + | chr4.4:28698816-28698835 | None:intergenic | 45.0% | |
| TAGGTGGGAGACAGATGAAT+TGG | - | chr4.4:28699339-28699358 | MS.gene56411:intron | 45.0% | |
| TTCAGGCTGATGCTAGACAT+GGG | - | chr4.4:28699085-28699104 | MS.gene56411:intron | 45.0% | |
| TTGAGTGTGTCTGCACTGTT+AGG | - | chr4.4:28698173-28698192 | MS.gene56411:CDS | 45.0% | |
| TTGTTCATTGTTTGCAGCGC+TGG | + | chr4.4:28698407-28698426 | None:intergenic | 45.0% | |
| TTTCAGGCTGATGCTAGACA+TGG | - | chr4.4:28699084-28699103 | MS.gene56411:intron | 45.0% | |
| !! | GAGAAAGAAGGTATCGCTGA+TGG | - | chr4.4:28699150-28699169 | MS.gene56411:intron | 45.0% |
| AGACAGATGAATTGGCCACC+TGG | - | chr4.4:28699347-28699366 | MS.gene56411:CDS | 50.0% | |
| CATCTGCACTTGCATGTCCT+AGG | - | chr4.4:28699320-28699339 | MS.gene56411:intron | 50.0% | |
| GACTGATGTCCCGAAAAGCT+AGG | + | chr4.4:28698785-28698804 | None:intergenic | 50.0% | |
| GCTAGACATGGGGAGATACT+GGG | - | chr4.4:28699096-28699115 | MS.gene56411:intron | 50.0% | |
| TCACAGTCAACAACAGCACC+TGG | + | chr4.4:28698092-28698111 | None:intergenic | 50.0% | |
| TCAGGCTGATGCTAGACATG+GGG | - | chr4.4:28699086-28699105 | MS.gene56411:intron | 50.0% | |
| TGCACTTGCATGTCCTAGGT+GGG | - | chr4.4:28699324-28699343 | MS.gene56411:intron | 50.0% | |
| TGCTAGACATGGGGAGATAC+TGG | - | chr4.4:28699095-28699114 | MS.gene56411:intron | 50.0% | |
| ! | TTTTGGCGGCATAGAGAAGC+TGG | + | chr4.4:28699122-28699141 | None:intergenic | 50.0% |
| !! | TTTTCGGGACATCAGTCCAC+AGG | - | chr4.4:28698788-28698807 | MS.gene56411:intron | 50.0% |
| ACAGGCTCCGGTTCATGTTC+TGG | - | chr4.4:28698806-28698825 | MS.gene56411:intron | 55.0% | |
| AGAACATGAACCGGAGCCTG+TGG | + | chr4.4:28698807-28698826 | None:intergenic | 55.0% | |
| CTGCACTTGCATGTCCTAGG+TGG | - | chr4.4:28699323-28699342 | MS.gene56411:intron | 55.0% | |
| !! | TTTGCAGCGCTGGCGCTAAA+TGG | + | chr4.4:28698397-28698416 | None:intergenic | 55.0% |
| GGACATCAGTCCACAGGCTC+CGG | - | chr4.4:28698794-28698813 | MS.gene56411:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 28697223 | 28699373 | 28697223 | ID=MS.gene56411 |
| chr4.4 | mRNA | 28697223 | 28699373 | 28697223 | ID=MS.gene56411.t1;Parent=MS.gene56411 |
| chr4.4 | exon | 28699342 | 28699373 | 28699342 | ID=MS.gene56411.t1.exon1;Parent=MS.gene56411.t1 |
| chr4.4 | CDS | 28699342 | 28699373 | 28699342 | ID=cds.MS.gene56411.t1;Parent=MS.gene56411.t1 |
| chr4.4 | exon | 28699172 | 28699264 | 28699172 | ID=MS.gene56411.t1.exon2;Parent=MS.gene56411.t1 |
| chr4.4 | CDS | 28699172 | 28699264 | 28699172 | ID=cds.MS.gene56411.t1;Parent=MS.gene56411.t1 |
| chr4.4 | exon | 28698120 | 28698206 | 28698120 | ID=MS.gene56411.t1.exon3;Parent=MS.gene56411.t1 |
| chr4.4 | CDS | 28698120 | 28698206 | 28698120 | ID=cds.MS.gene56411.t1;Parent=MS.gene56411.t1 |
| chr4.4 | exon | 28697727 | 28697874 | 28697727 | ID=MS.gene56411.t1.exon4;Parent=MS.gene56411.t1 |
| chr4.4 | CDS | 28697727 | 28697874 | 28697727 | ID=cds.MS.gene56411.t1;Parent=MS.gene56411.t1 |
| chr4.4 | exon | 28697389 | 28697506 | 28697389 | ID=MS.gene56411.t1.exon5;Parent=MS.gene56411.t1 |
| chr4.4 | CDS | 28697389 | 28697506 | 28697389 | ID=cds.MS.gene56411.t1;Parent=MS.gene56411.t1 |
| chr4.4 | exon | 28697223 | 28697290 | 28697223 | ID=MS.gene56411.t1.exon6;Parent=MS.gene56411.t1 |
| chr4.4 | CDS | 28697223 | 28697290 | 28697223 | ID=cds.MS.gene56411.t1;Parent=MS.gene56411.t1 |
| Gene Sequence |
| Protein sequence |
