AlfalfaGEDB | MS.gene56444

M. sativa cultivar XinJiangDaYe / MS.gene56444

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF01535.23 PF12854.10 PF13041.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56444.t1	XP_024636938.1	90.6	704	42	3	1	698	1	686	0.00E+00	1275

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56444.t1	Q0WNP3	58.0	526	217	2	168	692	88	610	4.9e-184	646.0

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56444.t1	A0A396IBB1	90.6	704	42	3	1	698	1	686	0.0e+00	1275.0

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049285	MS.gene56444	0.80066	1.30E-48	-1.69E-46
MS.gene054954	MS.gene56444	0.800302	1.54E-48	-1.69E-46
MS.gene055577	MS.gene56444	0.809622	1.73E-50	-1.69E-46
MS.gene059677	MS.gene56444	0.802406	5.70E-49	-1.69E-46
MS.gene059718	MS.gene56444	0.800419	1.45E-48	-1.69E-46

Showing 1 to 5 of 5 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene004294	MS.gene56444	PPI
MS.gene36347	MS.gene56444	PPI
MS.gene36348	MS.gene56444	PPI
MS.gene40201	MS.gene56444	PPI
MS.gene42371	MS.gene56444	PPI
MS.gene56444	MS.gene069865	PPI
MS.gene56444	MS.gene85146	PPI
MS.gene56444	MS.gene014559	PPI
MS.gene56444	MS.gene01601	PPI
MS.gene56444	MS.gene03114	PPI

Showing 1 to 10 of 14 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56444.t1	MTR_4g083630	88.478	703	43	4	1	697	1	671	0.0	1263
MS.gene56444.t1	MTR_3g011950	32.150	507	342	2	172	676	44	550	4.62e-83	280
MS.gene56444.t1	MTR_3g011950	26.458	480	341	5	170	640	140	616	3.29e-55	202
MS.gene56444.t1	MTR_3g011950	29.139	302	212	1	384	685	55	354	3.09e-32	134
MS.gene56444.t1	MTR_6g032915	32.044	543	362	4	160	695	279	821	3.92e-81	280
MS.gene56444.t1	MTR_6g032915	29.456	533	364	4	162	692	91	613	2.12e-74	261
MS.gene56444.t1	MTR_6g032915	28.538	431	306	2	256	684	74	504	1.93e-56	208
MS.gene56444.t1	MTR_7g100810	30.769	559	376	6	146	697	49	603	2.05e-80	272
MS.gene56444.t1	MTR_7g100810	24.736	473	313	7	147	577	149	620	2.22e-40	159
MS.gene56444.t1	MTR_7g100810	28.610	374	251	5	177	540	283	650	6.15e-39	154

Showing 1 to 10 of 1,210 entries

Previous1 2 3 4 5…121Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56444.t1	AT4G18520	57.985	526	217	2	168	692	88	610	0.0	653
MS.gene56444.t1	AT4G18520	32.084	427	275	5	279	697	98	517	1.44e-66	231
MS.gene56444.t1	AT3G53360	29.930	568	387	6	121	679	22	587	3.68e-83	279
MS.gene56444.t1	AT3G53360	26.585	489	351	6	172	652	175	663	6.42e-56	204
MS.gene56444.t1	AT3G53360	28.381	451	319	4	235	681	38	488	6.22e-50	187
MS.gene56444.t1	AT3G53360	30.493	223	145	5	167	379	475	697	1.03e-20	97.8
MS.gene56444.t1	AT3G53360	36.029	136	76	2	567	693	69	202	5.92e-18	89.0
MS.gene56444.t1	AT3G53360	29.930	568	387	6	121	679	22	587	3.68e-83	279
MS.gene56444.t1	AT3G53360	26.585	489	351	6	172	652	175	663	6.42e-56	204
MS.gene56444.t1	AT3G53360	28.381	451	319	4	235	681	38	488	6.22e-50	187

Showing 1 to 10 of 1,337 entries

Previous1 2 3 4 5…134Next

Find 137 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTCAAAACACATGCT+CGG	0.589492	4.3:+27980810	MS.gene56444:CDS
AAAAGGGTGGATTTAGCCTT+GGG	0.400884	4.3:+27981291	MS.gene56444:CDS
AAAATAAAGCATTGAAATTT+GGG	0.282132	4.3:+27981592	MS.gene56444:CDS
AAAATGGATGACACCAATGA+CGG	0.651383	4.3:+27980391	MS.gene56444:CDS
AAACAGTAGCTCATTGGCTG+CGG	0.579283	4.3:+27980965	MS.gene56444:CDS
AAAGGGTGGATTTAGCCTTG+GGG	0.697500	4.3:+27981292	MS.gene56444:CDS
AAAGGTGTTTGATAGAATGA+AGG	0.488647	4.3:+27981722	MS.gene56444:CDS
AAATACATTAGACAATGCAG+GGG	0.733052	4.3:-27982249	None:intergenic
AAATTAGAAGCTCCGATGCA+AGG	0.561908	4.3:+27982197	MS.gene56444:CDS
AAATTTGGGACACAGCTACA+CGG	0.658738	4.3:+27981606	MS.gene56444:CDS

Showing 1 to 10 of 137 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTTCAAAACACATGCT+CGG	+	chr4.3:27980810-27980829	MS.gene56444:CDS	30.0%
AAAGCACACTAACATTCAAA+CGG	-	chr4.3:27980537-27980556	None:intergenic	30.0%
AAATACATTAGACAATGCAG+GGG	-	chr4.3:27982252-27982271	None:intergenic	30.0%
AAGATTAGGTAAGTTAGTTC+AGG	+	chr4.3:27981092-27981111	MS.gene56444:CDS	30.0%
ACAAATACATTAGACAATGC+AGG	-	chr4.3:27982254-27982273	None:intergenic	30.0%
ACAATTAAGGCTTCACTAAT+TGG	+	chr4.3:27981894-27981913	MS.gene56444:CDS	30.0%
AGTTCATCTCGAATTTATCT+AGG	+	chr4.3:27980683-27980702	MS.gene56444:intron	30.0%
CAAATACATTAGACAATGCA+GGG	-	chr4.3:27982253-27982272	None:intergenic	30.0%
GAAAATGGAATACGATCTTA+TGG	-	chr4.3:27980627-27980646	None:intergenic	30.0%
GATGAGTAAGTATAGGAATT+AGG	-	chr4.3:27982158-27982177	None:intergenic	30.0%

Showing 1 to 10 of 174 entries

Previous1 2 3 4 5…18Next

Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	27979844	27982565	27979844	ID=MS.gene56444
chr4.3	mRNA	27979844	27982565	27979844	ID=MS.gene56444.t1;Parent=MS.gene56444
chr4.3	exon	27979844	27980009	27979844	ID=MS.gene56444.t1.exon1;Parent=MS.gene56444.t1
chr4.3	CDS	27979844	27980009	27979844	ID=cds.MS.gene56444.t1;Parent=MS.gene56444.t1
chr4.3	exon	27980275	27980442	27980275	ID=MS.gene56444.t1.exon2;Parent=MS.gene56444.t1
chr4.3	CDS	27980275	27980442	27980275	ID=cds.MS.gene56444.t1;Parent=MS.gene56444.t1
chr4.3	exon	27980803	27982565	27980803	ID=MS.gene56444.t1.exon3;Parent=MS.gene56444.t1
chr4.3	CDS	27980803	27982565	27980803	ID=cds.MS.gene56444.t1;Parent=MS.gene56444.t1

Gene Sequence

>MS.gene56444

ATGGAGTTACGAACTACTGCTATTGTTGTTATTCAATCATATTCATCCTGCTATTCTCTTCCCTCCAAGTTTCTCATTCTTAAACCGCTTCCAGATTTACCACCTTCTCCCTTGTCCATTACCATTTCTTCACTTCGCTCTTCATCCCTCCCTTTCTCTTACAAAGGTCTGTCTCTCACTTTTTTTTAATTTTATTTATTTATTACTGTACTTTTGTTCATTAACCAAAGTTATTTAATATATTTTGTCATTAGTGTAGCTGGTATACTTAGTAAATAGTAGCCAATTACGGCGACATTCTTTAATTTACTAAAAATGCATTTTACTTGTCTCTCTTGACTTGACTTGACTTTGATTATATTGTTGCACGGCTACTAATTTCTGTTATTATTATTATTATTATTATGCTAACTTGTTACTTGACCAAACAGATGGCGGTGCTCGTGTCACAAGGGTGGTGCTGAATCGCGTTGGTGAAGTGTTGTCGTGTGCAAGTACATCTAGTTCTTTTTGTTCTTTTGATGATGATTCCGACGGAGGTGATGAGAAAATGGATGACACCAATGACGGCACCGGGTTTTCGGATAACAGCCAAACTGGTGAGACTGAATGCCTTCAATTCTTAGTCAAGTTTTCTATAATTAGGCTTTTAAGTAAGTACTCAATTACATAAAGAAAAAAAAATCATATCCGTTTGAATGTTAGTGTGCTTTATAAGTCTCTAGAGTCAATTCTGTTTATACTGCAAGTAAAATTAGATGTTGATCCTTTTTATATTCACCATAAGATCGTATTCCATTTTCATCCACATATCCGAAGATTCGTCATTTGAAACATAGAGTTCATCTCGAATTTATCTAGGTTAATTTTAAATGGTACTTGTCACATTTACTGGATAGTTCAAACTTTTCTCTTTACTTAATCTAGTATTTGTGTCACTGTTATGTTTATGTCACAAGATTTGGCAAAACTTCAAAACACATGCTCGGCTGCGGTAAAAGTCTACGACACTGCAACTGAGAGTAATGAAGCACTAAATACTGCAGAGTTGAACTTTCCCCTAGATGCGTCTGACATGAAGATAGACAATTTTGCTGAGAAAGGTGAGTGCTTCAATCCAGAAACAGTAGCTCATTGGCTGCGGTTGTGTTATGATGTGGAAGAAGTAGGAAGGGTACACACAATTGTCTTGAAATGTTTTAGAGGTTCAAGTACTTATGTTGATAATAATTTGATTTGTAGCTATTTAAGATTAGGTAAGTTAGTTCAGGCTCGTAAAGTGTTTGACGGCATGTCAAGAAGGGATACAGTTACATGGACTGCTATTATAGATGGATATTTAAAATATAATTTGGATGATGAAGCTTTTAAGTTATTTCATGGTTCAATTAAGCACGGGATTCAACCGAACAGTAAGATGTTTGTCTGTTTCGTGAATTTGTGCTGTAAAAGGGTGGATTTAGCCTTGGGGAAACAAATCCACGCTCGTATCTTGAAAAGCAACTGGAGGAATCTAATCGTTGACAGTGCAGTTGTTAACTTTTATTCGAAATGTGGTAAAATTTCAAGTGCATTTAGAACATTTGATCGTATGGCAAAGCGAGATGTGGTTTGTTGGACGACTGTGATTACTGCTTGTTCCCAACACGGGCTCGGACATGAAGCGCAGTTATTGTTGTCACAAATGCTAGGTGATGGTTTCTTTCCTAATGAGTATACTATATGTGCTTCCCTAAAGGCTTGTGGAGAAAATAAAGCATTGAAATTTGGGACACAGCTACACGGCGCCATAATAAAGAAAATCTGCAAGAGTGATGTTTTTATAGGAACTTCTCTAATTGATATGTATGCAAAATGTGGGGAGATTGTGAGTTCTAAAAAGGTGTTTGATAGAATGAAGGTTAGAAATACAGCTACTTGGACATCCATTATATCAGGATATGCGCGAAATGGATTTGGCGAAGAGGCTTTAAACTTTTTTCGATTAATGAAGAGGAAAAAAGTATATGTTAATAAATTGACGCTTGTATGTGTCATGATGGCTTGTGGCACAATTAAGGCTTCACTAATTGGAAGAGAGGTTCATGCACAGAAAATCAAAAGTGTTATTCATACTAACATGTACATAGAAAGCACTTTGGTATGGTTCTATTGCAGATGTAAAGATTACTCTCATGCTTTCAATGTGCTCAAACATATGCCTTTAAGGGATGTTGTCTCATGGACTGCCATTATCTCTGGGTGTGCTAGGCTCGGGCTTGAAACCGAGGCTCTGGATTTTCTGCGTGAAATGATGGAAGAAGGTGTGTTGCCTAATTCCTATACTTACTCATCAGCTTTGAAAGCTTGTGCAAAATTAGAAGCTCCGATGCAAGGAAAATTGATTCATTCCAATGCAAGCAAGACCCCTGCATTGTCTAATGTATTTGTGAACAGTGCTTTAATATATATGTATGCGAAATGTGGATATATTGCGGATGCTTTTCAAGTCTTTGACAACATGCCGGAGAGGAATTTGGTATCTTGGAAAGCCATGATCTTGGGTTATGCAAGGAATGGACATTGTAGAAAGGCTCTAAAACTCATGTATAGAATGCGAGCTGAAGGTTTTGTGGTGGATGATTATATTCTTACCACAGTTCTTACTGCGTGTGGAGGCATTGATTCTGGAGACATTGATTGGGATCTCGAGTCTTCTTCACATGAATTGCATGCCTCGTAA

Protein sequence

>MS.gene56444.t1

MELRTTAIVVIQSYSSCYSLPSKFLILKPLPDLPPSPLSITISSLRSSSLPFSYKDGGARVTRVVLNRVGEVLSCASTSSSFCSFDDDSDGGDEKMDDTNDGTGFSDNSQTDLAKLQNTCSAAVKVYDTATESNEALNTAELNFPLDASDMKIDNFAEKGECFNPETVAHWLRLCYDVEEVGRVHTIVLKCFRGSSTYVDNNLICSYLRLGKLVQARKVFDGMSRRDTVTWTAIIDGYLKYNLDDEAFKLFHGSIKHGIQPNSKMFVCFVNLCCKRVDLALGKQIHARILKSNWRNLIVDSAVVNFYSKCGKISSAFRTFDRMAKRDVVCWTTVITACSQHGLGHEAQLLLSQMLGDGFFPNEYTICASLKACGENKALKFGTQLHGAIIKKICKSDVFIGTSLIDMYAKCGEIVSSKKVFDRMKVRNTATWTSIISGYARNGFGEEALNFFRLMKRKKVYVNKLTLVCVMMACGTIKASLIGREVHAQKIKSVIHTNMYIESTLVWFYCRCKDYSHAFNVLKHMPLRDVVSWTAIISGCARLGLETEALDFLREMMEEGVLPNSYTYSSALKACAKLEAPMQGKLIHSNASKTPALSNVFVNSALIYMYAKCGYIADAFQVFDNMPERNLVSWKAMILGYARNGHCRKALKLMYRMRAEGFVVDDYILTTVLTACGGIDSGDIDWDLESSSHELHAS