AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059718


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059718.t1 MTR_2g066060 35.088 171 99 2 161 322 218 385 2.42e-21 94.0
MS.gene059718.t1 MTR_7g114070 28.931 159 100 3 177 324 178 334 7.11e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059718.t1 AT2G21960 83.039 283 48 0 43 325 50 332 3.53e-172 481
MS.gene059718.t1 AT1G56180 32.143 168 105 1 166 324 217 384 1.44e-19 89.0
MS.gene059718.t1 AT5G27290 31.447 159 96 4 177 324 179 335 6.39e-14 72.0

Find 73 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGCTTGGCTTACCCATTT+TGG 0.102537 4.2:+10328771 MS.gene059718:CDS
GAAGCTCTGGTTGTGAATTT+AGG 0.115841 4.2:-10326410 None:intergenic
CTTCGAGAGCTGACAACTTT+AGG 0.199826 4.2:+10327307 MS.gene059718:CDS
GTCGATCCATGAAGCCTTAA+TGG 0.219380 4.2:+10329580 MS.gene059718:CDS
ATTCTGGCTGGCCAGCTTCC+CGG 0.227667 4.2:+10327544 MS.gene059718:CDS
ATCCAGTGAATATCCCAAAA+TGG 0.251435 4.2:-10328785 None:intergenic
TTCGAGAGCTGACAACTTTA+GGG 0.257197 4.2:+10327308 MS.gene059718:CDS
AACTGGATTCTTGGGTATTC+TGG 0.263208 4.2:+10327528 MS.gene059718:CDS
CTTGATCAACTGAGTGAAAT+TGG 0.263702 4.2:+10326758 MS.gene059718:CDS
TTCTGGCTGGCCAGCTTCCC+GGG 0.284405 4.2:+10327545 MS.gene059718:CDS
GCAATCCTTTCTTGATAATC+AGG 0.293245 4.2:-10328593 None:intergenic
AAGCTCTGGTTGTGAATTTA+GGG 0.294762 4.2:-10326409 None:intergenic
TTGGGATATTCACTGGATAT+TGG 0.298796 4.2:+10328790 MS.gene059718:CDS
TTCTTTGTACCATACTTGAT+TGG 0.309773 4.2:+10328400 MS.gene059718:CDS
AGTATTTCCTTAGTGGTATT+GGG 0.320539 4.2:+10328424 MS.gene059718:CDS
TGGCTGAGAACTCCATTTCT+TGG 0.327017 4.2:-10326786 None:intergenic
TTTACTGTGGTTGGAACAAC+TGG 0.327694 4.2:+10327511 MS.gene059718:CDS
ATCTTTGCTGAGTTGTGGTT+TGG 0.340177 4.2:-10329368 None:intergenic
GGTTGGAACAACTGGATTCT+TGG 0.341417 4.2:+10327519 MS.gene059718:CDS
TTTCTAGTTGCTTATCTGCT+TGG 0.354201 4.2:+10328757 MS.gene059718:intron
CTTTGCCATCGATGCCATTA+AGG 0.360946 4.2:-10329594 None:intergenic
AGCAACAAAATCTCACTAGA+TGG 0.367508 4.2:+10329392 MS.gene059718:CDS
TTTGGTGGTGATGATGATTA+TGG 0.373375 4.2:-10326367 None:intergenic
GAGTATTTCCTTAGTGGTAT+TGG 0.376884 4.2:+10328423 MS.gene059718:CDS
GGTTGATGTTGAAGCATGTT+TGG 0.383493 4.2:-10326385 None:intergenic
TCCTTAGTGGTATTGGGTAT+AGG 0.386228 4.2:+10328430 MS.gene059718:CDS
GAAATACTCCCAATCAAGTA+TGG 0.386262 4.2:-10328409 None:intergenic
GATTGGGAGTATTTCCTTAG+TGG 0.396031 4.2:+10328417 MS.gene059718:CDS
TCTTTGTACCATACTTGATT+GGG 0.396789 4.2:+10328401 MS.gene059718:CDS
TGCAGCAGAGGAAGAAGCTC+TGG 0.413680 4.2:-10326423 None:intergenic
CAGATTGGCTGTTGTATCAA+TGG 0.423423 4.2:+10329158 MS.gene059718:intron
TCGATGCCATTAAGGCTTCA+TGG 0.429892 4.2:-10329586 None:intergenic
TGTTGTATCAATGGCTGGAC+TGG 0.438705 4.2:+10329167 MS.gene059718:CDS
AAATTGGTTGGGCCAAGAAA+TGG 0.440413 4.2:+10326774 MS.gene059718:CDS
TCCAGTGAATATCCCAAAAT+GGG 0.449171 4.2:-10328784 None:intergenic
GCTTCTTCCTCTGCTGCACC+TGG 0.456080 4.2:+10326428 MS.gene059718:CDS
TTAACATATGACAAGGTTGT+TGG 0.456845 4.2:+10329201 MS.gene059718:CDS
ATGTCAATCTCATTGATGAT+AGG 0.463698 4.2:+10328821 MS.gene059718:CDS
TGCTGATCTTTGCTGAGTTG+TGG 0.475443 4.2:-10329373 None:intergenic
GTTGGAACAACTGGATTCTT+GGG 0.483037 4.2:+10327520 MS.gene059718:CDS
CTTGAAAAGCTTCTCTATAG+TGG 0.485483 4.2:+10328844 MS.gene059718:CDS
GGATTCTTGGGTATTCTGGC+TGG 0.487468 4.2:+10327532 MS.gene059718:CDS
GGATACATACCCCGGGAAGC+TGG 0.488405 4.2:-10327555 None:intergenic
AGACAGCAATGCAGTTAAAG+AGG 0.489669 4.2:+10326733 MS.gene059718:CDS
GGTATAGGCAGCACATCTCC+TGG 0.494301 4.2:+10328445 MS.gene059718:CDS
TTGATGCTAAGGAGATAGAT+AGG 0.494421 4.2:+10328872 MS.gene059718:CDS
AATGGCATCGATGGCAAAGA+AGG 0.499709 4.2:+10329598 MS.gene059718:CDS
GTCGACACCAGGTGCAGCAG+AGG 0.506013 4.2:-10326435 None:intergenic
ACCGTACGACGTGAAACATA+TGG 0.511639 4.2:-10326806 None:intergenic
TTGGCTGTTGTATCAATGGC+TGG 0.512860 4.2:+10329162 MS.gene059718:CDS
TGTTGACTGATGCAGGATTG+GGG 0.521890 4.2:+10328376 MS.gene059718:intron
GCCATATGTTTCACGTCGTA+CGG 0.524271 4.2:+10326805 MS.gene059718:CDS
TAGTGGTCAGCTTGATGCTA+AGG 0.529877 4.2:+10328861 MS.gene059718:CDS
TTGGGTAAAGATGATGAGTA+AGG 0.530143 4.2:-10326326 None:intergenic
ATCAACTGAGTGAAATTGGT+TGG 0.534376 4.2:+10326762 MS.gene059718:CDS
GCCTATACCCAATACCACTA+AGG 0.541332 4.2:-10328431 None:intergenic
TGAAGCCTTAATGGCATCGA+TGG 0.543498 4.2:+10329589 MS.gene059718:CDS
TCAACTGAGTGAAATTGGTT+GGG 0.547534 4.2:+10326763 MS.gene059718:CDS
AAAAGCTGCTAATAGCTGCT+TGG 0.552163 4.2:-10328559 None:intergenic
TTCTGACACTAGGAATTGCA+AGG 0.566777 4.2:-10327348 None:intergenic
TGATGTTGAAGCATGTTTGG+TGG 0.574649 4.2:-10326382 None:intergenic
GCAACAAAATCTCACTAGAT+GGG 0.575785 4.2:+10329393 MS.gene059718:CDS
TCTTGATTCTGCCATTGCCA+AGG 0.579069 4.2:+10326466 MS.gene059718:CDS
CTCTGGTTGTGAATTTAGGG+AGG 0.583321 4.2:-10326406 None:intergenic
ATGGTCAATTACCTTGGCAA+TGG 0.596299 4.2:-10326477 None:intergenic
CTCACATCATTTCTGACACT+AGG 0.596674 4.2:-10327358 None:intergenic
ATGGCTGGACTGGCAGCAGA+AGG 0.600695 4.2:+10329177 MS.gene059718:CDS
AGAGTGTTGAGGTCGACACC+AGG 0.613261 4.2:-10326446 None:intergenic
TCTGGCTGGCCAGCTTCCCG+GGG 0.613765 4.2:+10327546 MS.gene059718:CDS
GTATAGGCAGCACATCTCCT+GGG 0.621976 4.2:+10328446 MS.gene059718:CDS
TGGCAGAATCAAGAGTGTTG+AGG 0.645439 4.2:-10326457 None:intergenic
AGAAGGTTTAACATATGACA+AGG 0.674545 4.2:+10329194 MS.gene059718:CDS
TAAAGATGATGAGTAAGGCA+TGG 0.722574 4.2:-10326321 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATTATAATATGGTTT+GGG - chr4.2:10326347-10326366 None:intergenic 10.0%
!! TTATGGTAAAAATTATAATA+TGG - chr4.2:10326353-10326372 None:intergenic 10.0%
!! ACTTCAAATAAAAAATGTAA+TGG - chr4.2:10326499-10326518 None:intergenic 15.0%
!! GCATATGAATATTTAAATAT+GGG - chr4.2:10327239-10327258 None:intergenic 15.0%
!! GTAAAAATTATAATATGGTT+TGG - chr4.2:10326348-10326367 None:intergenic 15.0%
!! TGCATATGAATATTTAAATA+TGG - chr4.2:10327240-10327259 None:intergenic 15.0%
!!! TAAAAAGGAAATTTTATCTT+GGG + chr4.2:10327125-10327144 MS.gene059718:intron 15.0%
!!! TTAAAAAGGAAATTTTATCT+TGG + chr4.2:10327124-10327143 MS.gene059718:intron 15.0%
!! AACATTTCCCTTTAAATATT+TGG - chr4.2:10327072-10327091 None:intergenic 20.0%
!! ACTTCTTCCAAATATTTAAA+GGG + chr4.2:10327062-10327081 MS.gene059718:intron 20.0%
!! AGTTATATAAAAATTACACG+AGG + chr4.2:10326516-10326535 MS.gene059718:intron 20.0%
!! TACTTCTTCCAAATATTTAA+AGG + chr4.2:10327061-10327080 MS.gene059718:intron 20.0%
!! TCTAATTAATATGTTAGTGT+AGG + chr4.2:10328531-10328550 MS.gene059718:intron 20.0%
!! TTAACAAATGACTACAAATT+GGG - chr4.2:10329086-10329105 None:intergenic 20.0%
!!! AAGTGTAAATATTTTAGAAC+TGG + chr4.2:10328212-10328231 MS.gene059718:intron 20.0%
!!! ACTTGTTAAGAAGTTTAAAA+AGG + chr4.2:10327110-10327129 MS.gene059718:intron 20.0%
!!! TAAATATTTGGAAGAAGTAT+TGG - chr4.2:10327060-10327079 None:intergenic 20.0%
!!! TTCACATATTTTGAAAATAG+AGG - chr4.2:10329263-10329282 None:intergenic 20.0%
! ATTTCAAAAGCTCATATTTG+TGG + chr4.2:10329468-10329487 MS.gene059718:intron 25.0%
! CAGAACATCAACATTTATAA+TGG - chr4.2:10326838-10326857 None:intergenic 25.0%
! CATTATAAATGTTGATGTTC+TGG + chr4.2:10326836-10326855 MS.gene059718:intron 25.0%
! CCTAAATAACAAAGTGAAAA+TGG + chr4.2:10328259-10328278 MS.gene059718:intron 25.0%
! CTTAAAAAGCTTATATTTGC+AGG + chr4.2:10329523-10329542 MS.gene059718:intron 25.0%
! CTTAACAAATGACTACAAAT+TGG - chr4.2:10329087-10329106 None:intergenic 25.0%
! GATAGATAGGTATATTTACT+AGG + chr4.2:10328885-10328904 MS.gene059718:intron 25.0%
! GTATCAAATGGAATTATACA+TGG + chr4.2:10327410-10327429 MS.gene059718:intron 25.0%
! TAGTGCATATTCTTAAATCA+CGG + chr4.2:10328914-10328933 MS.gene059718:intron 25.0%
! TATATGATATGACATGAACA+CGG + chr4.2:10328999-10329018 MS.gene059718:intron 25.0%
!! AACTTTAGGGATTAAAAATG+CGG + chr4.2:10327321-10327340 MS.gene059718:CDS 25.0%
!! AAGTATATATTTTGCTACAG+AGG + chr4.2:10329332-10329351 MS.gene059718:intron 25.0%
!! AGATAAATTTGGAATTGGAA+TGG - chr4.2:10327738-10327757 None:intergenic 25.0%
!! ATATAGGAGTTTTCTAAACT+AGG - chr4.2:10328984-10329003 None:intergenic 25.0%
!! ATGGATTGAATACAATTTCA+CGG - chr4.2:10326632-10326651 None:intergenic 25.0%
!! CTGCAAATATAAGCTTTTTA+AGG - chr4.2:10329525-10329544 None:intergenic 25.0%
!! TAATTAGAGCATTAATGCTA+TGG - chr4.2:10328519-10328538 None:intergenic 25.0%
!! TACTCAGATAAATTTGGAAT+TGG - chr4.2:10327743-10327762 None:intergenic 25.0%
!! TCAAAGTACTCAGATAAATT+TGG - chr4.2:10327749-10327768 None:intergenic 25.0%
!! TGAAAAAGGAAATTCCATTT+TGG - chr4.2:10328002-10328021 None:intergenic 25.0%
!! TTTTTCCTGATTATCAAGAA+AGG + chr4.2:10328588-10328607 MS.gene059718:CDS 25.0%
!!! CCATTTTCACTTTGTTATTT+AGG - chr4.2:10328262-10328281 None:intergenic 25.0%
!!! TATTGCTTGTTTTTTCAGAT+TGG + chr4.2:10329143-10329162 MS.gene059718:intron 25.0%
!!! TCTATTTTTGCAGTATCAAA+TGG + chr4.2:10327398-10327417 MS.gene059718:intron 25.0%
!!! TCTGCATTATGCTTTTTTTA+GGG + chr4.2:10328094-10328113 MS.gene059718:intron 25.0%
!!! TTCTGCATTATGCTTTTTTT+AGG + chr4.2:10328093-10328112 MS.gene059718:intron 25.0%
AAATGGTAGTTTATACCGTT+TGG + chr4.2:10326661-10326680 MS.gene059718:intron 30.0%
AAATGTTAACAAGTGTCCTT+GGG + chr4.2:10327085-10327104 MS.gene059718:intron 30.0%
AAGTACCAATGTGAAGAAAT+AGG + chr4.2:10329111-10329130 MS.gene059718:intron 30.0%
AATATTTAACTAGTGCCCTA+AGG + chr4.2:10327197-10327216 MS.gene059718:intron 30.0%
AATGGTAGTTTATACCGTTT+GGG + chr4.2:10326662-10326681 MS.gene059718:intron 30.0%
AATGTAATGGTCAATTACCT+TGG - chr4.2:10326486-10326505 None:intergenic 30.0%
ACATATAACACAGATCTTTG+TGG + chr4.2:10327471-10327490 MS.gene059718:intron 30.0%
ACTACCATTTCAATGAACAA+TGG - chr4.2:10326651-10326670 None:intergenic 30.0%
AGAAGGTTTAACATATGACA+AGG + chr4.2:10329194-10329213 MS.gene059718:CDS 30.0%
AGAGTTAAAAGAAGCCAAAA+TGG + chr4.2:10327985-10328004 MS.gene059718:intron 30.0%
AGTAAGAAGGTGAAAACTAT+TGG - chr4.2:10328317-10328336 None:intergenic 30.0%
AGTATTTCCTTAGTGGTATT+GGG + chr4.2:10328424-10328443 MS.gene059718:CDS 30.0%
ATATCAGCCATAAAAGCAAT+AGG - chr4.2:10328652-10328671 None:intergenic 30.0%
ATATTTAACTAGTGCCCTAA+GGG + chr4.2:10327198-10327217 MS.gene059718:intron 30.0%
CAATCCATTGTTCATTGAAA+TGG + chr4.2:10326644-10326663 MS.gene059718:intron 30.0%
CAATGTAACAATATGTGTTG+TGG - chr4.2:10326963-10326982 None:intergenic 30.0%
GACAAAAATGCATAAACTTG+AGG - chr4.2:10329503-10329522 None:intergenic 30.0%
GTAAGAAGGTGAAAACTATT+GGG - chr4.2:10328316-10328335 None:intergenic 30.0%
GTGTTCATGTCATATCATAT+AGG - chr4.2:10329000-10329019 None:intergenic 30.0%
GTTCAGTTATATTACCCAAA+CGG - chr4.2:10326679-10326698 None:intergenic 30.0%
TATCAGCCATAAAAGCAATA+GGG - chr4.2:10328651-10328670 None:intergenic 30.0%
TCTTTGTACCATACTTGATT+GGG + chr4.2:10328401-10328420 MS.gene059718:CDS 30.0%
TGGATTGAATACAATTTCAC+GGG - chr4.2:10326631-10326650 None:intergenic 30.0%
TGTCGAATTTCACAAAATCA+TGG - chr4.2:10328945-10328964 None:intergenic 30.0%
TTAACATATGACAAGGTTGT+TGG + chr4.2:10329201-10329220 MS.gene059718:CDS 30.0%
TTCTTTGTACCATACTTGAT+TGG + chr4.2:10328400-10328419 MS.gene059718:CDS 30.0%
! ATGTCAATCTCATTGATGAT+AGG + chr4.2:10328821-10328840 MS.gene059718:CDS 30.0%
! CTTTACCTATTTCTTCACAT+TGG - chr4.2:10329119-10329138 None:intergenic 30.0%
AACACTTCACTTCAGATTGA+GGG + chr4.2:10326906-10326925 MS.gene059718:intron 35.0%
AAGTGTGGATATAGCATTCA+TGG + chr4.2:10327675-10327694 MS.gene059718:intron 35.0%
AATGTTAACAAGTGTCCTTG+GGG + chr4.2:10327086-10327105 MS.gene059718:intron 35.0%
AATTTGATGTCGCAATGAAG+CGG - chr4.2:10327791-10327810 None:intergenic 35.0%
AGCAACAAAATCTCACTAGA+TGG + chr4.2:10329392-10329411 MS.gene059718:CDS 35.0%
ATCAACTGAGTGAAATTGGT+TGG + chr4.2:10326762-10326781 MS.gene059718:CDS 35.0%
ATCCAGTGAATATCCCAAAA+TGG - chr4.2:10328788-10328807 None:intergenic 35.0%
CAGAAGTTTAAGAATGTCCT+TGG + chr4.2:10328177-10328196 MS.gene059718:intron 35.0%
CTACAGCTTGAAATTATGAC+TGG + chr4.2:10327877-10327896 MS.gene059718:intron 35.0%
CTTGAAAAGCTTCTCTATAG+TGG + chr4.2:10328844-10328863 MS.gene059718:CDS 35.0%
CTTGATCAACTGAGTGAAAT+TGG + chr4.2:10326758-10326777 MS.gene059718:CDS 35.0%
GAAATACTCCCAATCAAGTA+TGG - chr4.2:10328412-10328431 None:intergenic 35.0%
GAAATGTTAACAAGTGTCCT+TGG + chr4.2:10327084-10327103 MS.gene059718:intron 35.0%
GAGTATTTCCTTAGTGGTAT+TGG + chr4.2:10328423-10328442 MS.gene059718:CDS 35.0%
GCAACAAAATCTCACTAGAT+GGG + chr4.2:10329393-10329412 MS.gene059718:CDS 35.0%
GGATTGAATACAATTTCACG+GGG - chr4.2:10326630-10326649 None:intergenic 35.0%
GGCATAACAAGCAAGTTAAA+AGG - chr4.2:10328241-10328260 None:intergenic 35.0%
TAACACTTCACTTCAGATTG+AGG + chr4.2:10326905-10326924 MS.gene059718:intron 35.0%
TAAGAACTACGCTTACAAGT+TGG + chr4.2:10328469-10328488 MS.gene059718:intron 35.0%
TAGCGATTGTTCAAAAGAAG+TGG - chr4.2:10328058-10328077 None:intergenic 35.0%
TCAAAAGCTCATATTTGTGG+AGG + chr4.2:10329471-10329490 MS.gene059718:intron 35.0%
TCAACTGAGTGAAATTGGTT+GGG + chr4.2:10326763-10326782 MS.gene059718:CDS 35.0%
TCCAGTGAATATCCCAAAAT+GGG - chr4.2:10328787-10328806 None:intergenic 35.0%
TTCTAAACTAGGTGTCTGTT+TGG - chr4.2:10328973-10328992 None:intergenic 35.0%
TTGATGCTAAGGAGATAGAT+AGG + chr4.2:10328872-10328891 MS.gene059718:CDS 35.0%
TTGGGATATTCACTGGATAT+TGG + chr4.2:10328790-10328809 MS.gene059718:CDS 35.0%
TTGGGTAAAGATGATGAGTA+AGG - chr4.2:10326329-10326348 None:intergenic 35.0%
! AAGCTCTGGTTGTGAATTTA+GGG - chr4.2:10326412-10326431 None:intergenic 35.0%
! AAGTAACAAAGAAGAGTGCA+AGG - chr4.2:10327580-10327599 None:intergenic 35.0%
! AGTAACAAAGAAGAGTGCAA+GGG - chr4.2:10327579-10327598 None:intergenic 35.0%
! CACTTTTCACTTATCTACCA+AGG - chr4.2:10328197-10328216 None:intergenic 35.0%
! GCAATCCTTTCTTGATAATC+AGG - chr4.2:10328596-10328615 None:intergenic 35.0%
! GTGAAGTGTTAGTGCTATAT+AGG - chr4.2:10326896-10326915 None:intergenic 35.0%
!! AGAGTTGATGAGAAGTAAGA+AGG - chr4.2:10328330-10328349 None:intergenic 35.0%
!! AGTAGTGTTATTTGCAAGTG+TGG + chr4.2:10327660-10327679 MS.gene059718:intron 35.0%
!! TTTCTAGTTGCTTATCTGCT+TGG + chr4.2:10328757-10328776 MS.gene059718:intron 35.0%
!! TTTGGTGGTGATGATGATTA+TGG - chr4.2:10326370-10326389 None:intergenic 35.0%
AAAAGCTGCTAATAGCTGCT+TGG - chr4.2:10328562-10328581 None:intergenic 40.0%
AAATTGGTTGGGCCAAGAAA+TGG + chr4.2:10326774-10326793 MS.gene059718:CDS 40.0%
AACTAGGTGTCTGTTTGGAT+TGG - chr4.2:10328968-10328987 None:intergenic 40.0%
AACTGGATTCTTGGGTATTC+TGG + chr4.2:10327528-10327547 MS.gene059718:CDS 40.0%
ACGAGGTTATACTCGATGAT+GGG + chr4.2:10326533-10326552 MS.gene059718:intron 40.0%
ACTTGTGATGCAGGTGAAAA+AGG - chr4.2:10328016-10328035 None:intergenic 40.0%
AGACAGCAATGCAGTTAAAG+AGG + chr4.2:10326733-10326752 MS.gene059718:CDS 40.0%
AGCTTGAAATTATGACTGGC+AGG + chr4.2:10327881-10327900 MS.gene059718:intron 40.0%
ATAGGGCAGTACTCAAAAAG+TGG - chr4.2:10328634-10328653 None:intergenic 40.0%
ATCTTTGCTGAGTTGTGGTT+TGG - chr4.2:10329371-10329390 None:intergenic 40.0%
ATGGTCAATTACCTTGGCAA+TGG - chr4.2:10326480-10326499 None:intergenic 40.0%
CTCACATCATTTCTGACACT+AGG - chr4.2:10327361-10327380 None:intergenic 40.0%
CTTGTTAACCAATGCCCTTA+GGG - chr4.2:10327215-10327234 None:intergenic 40.0%
GAAAATAGAGGTCTCAAACC+TGG - chr4.2:10329251-10329270 None:intergenic 40.0%
GCATTCATGGTTTCACATTG+TGG + chr4.2:10327688-10327707 MS.gene059718:intron 40.0%
GGTGTATCTTACATGTGTTG+TGG + chr4.2:10326927-10326946 MS.gene059718:intron 40.0%
GTAGACTAAACTTGTGATGC+AGG - chr4.2:10328025-10328044 None:intergenic 40.0%
GTTGGAACAACTGGATTCTT+GGG + chr4.2:10327520-10327539 MS.gene059718:CDS 40.0%
TAGGGCAGTACTCAAAAAGT+GGG - chr4.2:10328633-10328652 None:intergenic 40.0%
TATGACATGAACACGGAATG+TGG + chr4.2:10329006-10329025 MS.gene059718:intron 40.0%
TCTTGTTAACCAATGCCCTT+AGG - chr4.2:10327216-10327235 None:intergenic 40.0%
TGATGTCTGTCGCACAAATT+TGG - chr4.2:10327287-10327306 None:intergenic 40.0%
TGATGTTGAAGCATGTTTGG+TGG - chr4.2:10326385-10326404 None:intergenic 40.0%
TTCGAGAGCTGACAACTTTA+GGG + chr4.2:10327308-10327327 MS.gene059718:CDS 40.0%
TTCTGACACTAGGAATTGCA+AGG - chr4.2:10327351-10327370 None:intergenic 40.0%
TTGCTTATTGCTATGTCCCT+TGG - chr4.2:10326869-10326888 None:intergenic 40.0%
TTTACTGTGGTTGGAACAAC+TGG + chr4.2:10327511-10327530 MS.gene059718:CDS 40.0%
! ATGTTCTGGATAGATGCCAA+GGG + chr4.2:10326850-10326869 MS.gene059718:intron 40.0%
! CAGATTGGCTGTTGTATCAA+TGG + chr4.2:10329158-10329177 MS.gene059718:intron 40.0%
! GAAGCTCTGGTTGTGAATTT+AGG - chr4.2:10326413-10326432 None:intergenic 40.0%
! GCTTTTCTCTTTACTGTGGT+TGG + chr4.2:10327502-10327521 MS.gene059718:CDS 40.0%
! GGTAGGCTTGTAGTCTTTTA+TGG + chr4.2:10327914-10327933 MS.gene059718:intron 40.0%
! GGTTGATGTTGAAGCATGTT+TGG - chr4.2:10326388-10326407 None:intergenic 40.0%
! TAATGCTTGTTGACTGATGC+AGG + chr4.2:10328369-10328388 MS.gene059718:intron 40.0%
! TCCTTAGTGGTATTGGGTAT+AGG + chr4.2:10328430-10328449 MS.gene059718:CDS 40.0%
! TTGTTGACTGATGCAGGATT+GGG + chr4.2:10328375-10328394 MS.gene059718:intron 40.0%
!! GATTGGGAGTATTTCCTTAG+TGG + chr4.2:10328417-10328436 MS.gene059718:CDS 40.0%
!! GTACTGCCCTATTGCTTTTA+TGG + chr4.2:10328642-10328661 MS.gene059718:intron 40.0%
!! TGTCTCCTCTTTGAAGTTGA+CGG + chr4.2:10328125-10328144 MS.gene059718:intron 40.0%
!!! ACCCATTTTGGGATATTCAC+TGG + chr4.2:10328783-10328802 MS.gene059718:CDS 40.0%
AACACAGATCTTTGTGGTGC+AGG + chr4.2:10327477-10327496 MS.gene059718:intron 45.0%
ACCGTACGACGTGAAACATA+TGG - chr4.2:10326809-10326828 None:intergenic 45.0%
ACTTCTTAACAAGTGCCCCA+AGG - chr4.2:10327104-10327123 None:intergenic 45.0%
ATTATGACTGGCAGGCCATT+TGG + chr4.2:10327889-10327908 MS.gene059718:intron 45.0%
CACGAGGTTATACTCGATGA+TGG + chr4.2:10326532-10326551 MS.gene059718:intron 45.0%
CGAGGTTATACTCGATGATG+GGG + chr4.2:10326534-10326553 MS.gene059718:intron 45.0%
CTCTGGTTGTGAATTTAGGG+AGG - chr4.2:10326409-10326428 None:intergenic 45.0%
CTTCGAGAGCTGACAACTTT+AGG + chr4.2:10327307-10327326 MS.gene059718:CDS 45.0%
CTTTGCCATCGATGCCATTA+AGG - chr4.2:10329597-10329616 None:intergenic 45.0%
GCCATATGTTTCACGTCGTA+CGG + chr4.2:10326805-10326824 MS.gene059718:CDS 45.0%
GCCTATACCCAATACCACTA+AGG - chr4.2:10328434-10328453 None:intergenic 45.0%
GCTATGGCAAACACTGAAGA+GGG - chr4.2:10328503-10328522 None:intergenic 45.0%
GGTTGGAACAACTGGATTCT+TGG + chr4.2:10327519-10327538 MS.gene059718:CDS 45.0%
GTCGATCCATGAAGCCTTAA+TGG + chr4.2:10329580-10329599 MS.gene059718:CDS 45.0%
TAGTGGTCAGCTTGATGCTA+AGG + chr4.2:10328861-10328880 MS.gene059718:CDS 45.0%
TCGATGCCATTAAGGCTTCA+TGG - chr4.2:10329589-10329608 None:intergenic 45.0%
TCTGTCGCACAAATTTGGAG+AGG - chr4.2:10327282-10327301 None:intergenic 45.0%
TCTTGATTCTGCCATTGCCA+AGG + chr4.2:10326466-10326485 MS.gene059718:CDS 45.0%
TGCTATGGCAAACACTGAAG+AGG - chr4.2:10328504-10328523 None:intergenic 45.0%
TGCTGATCTTTGCTGAGTTG+TGG - chr4.2:10329376-10329395 None:intergenic 45.0%
TGGCTGAGAACTCCATTTCT+TGG - chr4.2:10326789-10326808 None:intergenic 45.0%
TGTAAGCGTAGTTCTTACCC+AGG - chr4.2:10328466-10328485 None:intergenic 45.0%
TGTTGTATCAATGGCTGGAC+TGG + chr4.2:10329167-10329186 MS.gene059718:CDS 45.0%
TTGGCTGTTGTATCAATGGC+TGG + chr4.2:10329162-10329181 MS.gene059718:CDS 45.0%
! CTGCTTGGCTTACCCATTTT+GGG + chr4.2:10328772-10328791 MS.gene059718:CDS 45.0%
! CTTGTTGACTGATGCAGGAT+TGG + chr4.2:10328374-10328393 MS.gene059718:intron 45.0%
! GATGTTCTGGATAGATGCCA+AGG + chr4.2:10326849-10326868 MS.gene059718:intron 45.0%
! GGCAGCTTTTCTCTTTACTG+TGG + chr4.2:10327498-10327517 MS.gene059718:intron 45.0%
! TCTGCTTGGCTTACCCATTT+TGG + chr4.2:10328771-10328790 MS.gene059718:CDS 45.0%
! TGAAGCCTTAATGGCATCGA+TGG + chr4.2:10329589-10329608 MS.gene059718:CDS 45.0%
! TGCTGATCTTTTCACTCTCC+AGG + chr4.2:10329230-10329249 MS.gene059718:CDS 45.0%
! TGTTGACTGATGCAGGATTG+GGG + chr4.2:10328376-10328395 MS.gene059718:intron 45.0%
!! AATGGCATCGATGGCAAAGA+AGG + chr4.2:10329598-10329617 MS.gene059718:CDS 45.0%
!! GTCTCCTCTTTGAAGTTGAC+GGG + chr4.2:10328126-10328145 MS.gene059718:intron 45.0%
!! TGGCAGAATCAAGAGTGTTG+AGG - chr4.2:10326460-10326479 None:intergenic 45.0%
AGTGCAAGGGATACATACCC+CGG - chr4.2:10327566-10327585 None:intergenic 50.0%
CTACAAGCCTACCAGCCAAA+TGG - chr4.2:10327907-10327926 None:intergenic 50.0%
GGATTCTTGGGTATTCTGGC+TGG + chr4.2:10327532-10327551 MS.gene059718:CDS 50.0%
GTATAGGCAGCACATCTCCT+GGG + chr4.2:10328446-10328465 MS.gene059718:CDS 50.0%
TGAGCCCGTCAACTTCAAAG+AGG - chr4.2:10328133-10328152 None:intergenic 50.0%
! AACTAGTGCCCTAAGGGCAT+TGG + chr4.2:10327204-10327223 MS.gene059718:intron 50.0%
!! CTCGATGATGGGGAACATGA+AGG + chr4.2:10326544-10326563 MS.gene059718:intron 50.0%
GGTATAGGCAGCACATCTCC+TGG + chr4.2:10328445-10328464 MS.gene059718:CDS 55.0%
GTGCAAGGGATACATACCCC+GGG - chr4.2:10327565-10327584 None:intergenic 55.0%
TGCAGCAGAGGAAGAAGCTC+TGG - chr4.2:10326426-10326445 None:intergenic 55.0%
!! AGAGTGTTGAGGTCGACACC+AGG - chr4.2:10326449-10326468 None:intergenic 55.0%
GCTTCTTCCTCTGCTGCACC+TGG + chr4.2:10326428-10326447 MS.gene059718:CDS 60.0%
GGATACATACCCCGGGAAGC+TGG - chr4.2:10327558-10327577 None:intergenic 60.0%
TGACTGGCAGGCCATTTGGC+TGG + chr4.2:10327893-10327912 MS.gene059718:intron 60.0%
TGGCAGGCCATTTGGCTGGT+AGG + chr4.2:10327897-10327916 MS.gene059718:intron 60.0%
! ATTCTGGCTGGCCAGCTTCC+CGG + chr4.2:10327544-10327563 MS.gene059718:CDS 60.0%
!! ATGGCTGGACTGGCAGCAGA+AGG + chr4.2:10329177-10329196 MS.gene059718:CDS 60.0%
GTCGACACCAGGTGCAGCAG+AGG - chr4.2:10326438-10326457 None:intergenic 65.0%
! TTCTGGCTGGCCAGCTTCCC+GGG + chr4.2:10327545-10327564 MS.gene059718:CDS 65.0%
! TCTGGCTGGCCAGCTTCCCG+GGG + chr4.2:10327546-10327565 MS.gene059718:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 10326323 10329664 10326323 ID=MS.gene059718
chr4.2 mRNA 10326323 10329664 10326323 ID=MS.gene059718.t1;Parent=MS.gene059718
chr4.2 exon 10326323 10326487 10326323 ID=MS.gene059718.t1.exon1;Parent=MS.gene059718.t1
chr4.2 CDS 10326323 10326487 10326323 ID=cds.MS.gene059718.t1;Parent=MS.gene059718.t1
chr4.2 exon 10326731 10326826 10326731 ID=MS.gene059718.t1.exon2;Parent=MS.gene059718.t1
chr4.2 CDS 10326731 10326826 10326731 ID=cds.MS.gene059718.t1;Parent=MS.gene059718.t1
chr4.2 exon 10327301 10327375 10327301 ID=MS.gene059718.t1.exon3;Parent=MS.gene059718.t1
chr4.2 CDS 10327301 10327375 10327301 ID=cds.MS.gene059718.t1;Parent=MS.gene059718.t1
chr4.2 exon 10327499 10327567 10327499 ID=MS.gene059718.t1.exon4;Parent=MS.gene059718.t1
chr4.2 CDS 10327499 10327567 10327499 ID=cds.MS.gene059718.t1;Parent=MS.gene059718.t1
chr4.2 exon 10328391 10328467 10328391 ID=MS.gene059718.t1.exon5;Parent=MS.gene059718.t1
chr4.2 CDS 10328391 10328467 10328391 ID=cds.MS.gene059718.t1;Parent=MS.gene059718.t1
chr4.2 exon 10328553 10328641 10328553 ID=MS.gene059718.t1.exon6;Parent=MS.gene059718.t1
chr4.2 CDS 10328553 10328641 10328553 ID=cds.MS.gene059718.t1;Parent=MS.gene059718.t1
chr4.2 exon 10328764 10328893 10328764 ID=MS.gene059718.t1.exon7;Parent=MS.gene059718.t1
chr4.2 CDS 10328764 10328893 10328764 ID=cds.MS.gene059718.t1;Parent=MS.gene059718.t1
chr4.2 exon 10329161 10329251 10329161 ID=MS.gene059718.t1.exon8;Parent=MS.gene059718.t1
chr4.2 CDS 10329161 10329251 10329161 ID=cds.MS.gene059718.t1;Parent=MS.gene059718.t1
chr4.2 exon 10329352 10329417 10329352 ID=MS.gene059718.t1.exon9;Parent=MS.gene059718.t1
chr4.2 CDS 10329352 10329417 10329352 ID=cds.MS.gene059718.t1;Parent=MS.gene059718.t1
chr4.2 exon 10329545 10329664 10329545 ID=MS.gene059718.t1.exon10;Parent=MS.gene059718.t1
chr4.2 CDS 10329545 10329664 10329545 ID=cds.MS.gene059718.t1;Parent=MS.gene059718.t1
Gene Sequence

>MS.gene059718

ATGCCTTACTCATCATCTTTACCCAAACCATATTATAATTTTTACCATAATCATCATCACCACCAAACATGCTTCAACATCAACCTCCCTAAATTCACAACCAGAGCTTCTTCCTCTGCTGCACCTGGTGTCGACCTCAACACTCTTGATTCTGCCATTGCCAAGGTAATTGACCATTACATTTTTTATTTGAAGTTATATAAAAATTACACGAGGTTATACTCGATGATGGGGAACATGAAGGTTTTCTAAATTTCAAGTTCAAGTTAGATATTTTTTTGTTATATGCTTAAAATAAAATAATCCCCGTGAAATTGTATTCAATCCATTGTTCATTGAAATGGTAGTTTATACCGTTTGGGTAATATAACTGAACTAACAAGTATGTAAATAAATGTGTTTGTGCAGAAAGACAGCAATGCAGTTAAAGAGGCACTTGATCAACTGAGTGAAATTGGTTGGGCCAAGAAATGGAGTTCTCAGCCATATGTTTCACGTCGTACGGTTAGTGTCCATTATAAATGTTGATGTTCTGGATAGATGCCAAGGGACATAGCAATAAGCAATGCACCTATATAGCACTAACACTTCACTTCAGATTGAGGGTGTATCTTACATGTGTTGTGGACTGTCGTGTCCACAACACATATTGTTACATTGAATCAATTTTCTTAAATTTTTATCGATGATGTTCGCGTATGTATCAGTCTTTCTAGTCAAGTATATTATTTTGTCCAATACTTCTTCCAAATATTTAAAGGGAAATGTTAACAAGTGTCCTTGGGGCACTTGTTAAGAAGTTTAAAAAGGAAATTTTATCTTGGGAATGATTTATTCAGCACATTGAAAGTTTAAAAAGTAACTTTATCTACAAAATATTTAACTAGTGCCCTAAGGGCATTGGTTAACAAGACCCATATTTAAATATTCATATGCAAGCTTCGTTATTCGTTTAACCTCTCCAAATTTGTGCGACAGACATCACTTCGAGAGCTGACAACTTTAGGGATTAAAAATGCGGAGAACCTTGCAATTCCTAGTGTCAGAAATGATGTGAGTTTTCAGAATTTCTTTCTCTATTTTTGCAGTATCAAATGGAATTATACATGGCATATGACTTTCTTGAGAATTAAGTTTTTTCAAGTACAACATATAACACAGATCTTTGTGGTGCAGGCAGCTTTTCTCTTTACTGTGGTTGGAACAACTGGATTCTTGGGTATTCTGGCTGGCCAGCTTCCCGGGGTATGTATCCCTTGCACTCTTCTTTGTTACTTTGTATGTCTGTTTGATGATCTTGTGTATGATAATCTGTTTTTAGAAATATGATGAAGTCTAGTAGTGTTATTTGCAAGTGTGGATATAGCATTCATGGTTTCACATTGTGGTTGTAGTCAAGCACATTTGTATATCCATTCCAATTCCAAATTTATCTGAGTACTTTGAAGTCTGCATCAAAGTGCATCCGCTTCATTGCGACATCAAATTGTATATTTTTTCGTGATTTTCAAAAGCATCACAACGTGATACTGTAGACATATCGCTTAATGTAGTCTACAGCTTGAAATTATGACTGGCAGGCCATTTGGCTGGTAGGCTTGTAGTCTTTTATGGATTATAAATGATATCTTGATAATTGAGTTTTTTTTTAAGAAGATAATTAGAGTTAAAAGAAGCCAAAATGGAATTTCCTTTTTCACCTGCATCACAAGTTTAGTCTACATACTATATTCCACTTCTTTTGAACAATCGCTAGCAATAGTGATAATTTTCTGCATTATGCTTTTTTTAGGGTTTAGAATTGTCTCCTCTTTGAAGTTGACGGGCTCATACATTTAGCTTATGACTATTAAACAGAAGTTTAAGAATGTCCTTGGTAGATAAGTGAAAAGTGTAAATATTTTAGAACTGGATTCCTTTTAACTTGCTTGTTATGCCTAAATAACAAAGTGAAAATGGAAAATAAGTTTTGTTTGAAAATAATTTTGCTCCCAATAGTTTTCACCTTCTTACTTCTCATCAACTCTCTCATTTATCATCTGTGATTAATGCTTGTTGACTGATGCAGGATTGGGGCTTCTTTGTACCATACTTGATTGGGAGTATTTCCTTAGTGGTATTGGGTATAGGCAGCACATCTCCTGGGTAAGAACTACGCTTACAAGTTGGCAAGAATGCCCTCTTCAGTGTTTGCCATAGCATTAATGCTCTAATTAATATGTTAGTGTAGGCTTCTCCAAGCAGCTATTAGCAGCTTTTCAGTTGTTTTTCCTGATTATCAAGAAAGGATTGCTAGACATGAAGCAGCCCACTTTTTGAGTACTGCCCTATTGCTTTTATGGCTGATATTCATTCACAAAGTATCAGATATATCATATATGTCTTATCAATTTCATCATGACTCTAACTCAGCTTCTTCTTTTTGTTCATTCTATTTCTAGTTGCTTATCTGCTTGGCTTACCCATTTTGGGATATTCACTGGATATTGGAAAAGAGCATGTCAATCTCATTGATGATAGGCTTGAAAAGCTTCTCTATAGTGGTCAGCTTGATGCTAAGGAGATAGATAGGTATATTTACTAGGAAACTTTAGTGCATATTCTTAAATCACGGTAGCACCATGATTTTGTGAAATTCGACACCAATCCAAACAGACACCTAGTTTAGAAAACTCCTATATGATATGACATGAACACGGAATGTGGTGAAAATTAAAAATCATAAGACATGTCACAACTATAATAAAATGAAGAAATTATCCCAATTTGTAGTCATTTGTTAAGAACAAAGTACCAATGTGAAGAAATAGGTAAAGTTGTTATTGCTTGTTTTTTCAGATTGGCTGTTGTATCAATGGCTGGACTGGCAGCAGAAGGTTTAACATATGACAAGGTTGTTGGTCAATCTGCTGATCTTTTCACTCTCCAGGTTTGAGACCTCTATTTTCAAAATATGTGAATATTATTAAACTACTCACTAGTATTATTGAATCAAATAATAATTTTAAAAAGTATATATTTTGCTACAGAGGTTTATAAACAGAACCAAACCACAACTCAGCAAAGATCAGCAACAAAATCTCACTAGATGGGCAGTAAGTTCTTCTATAACACAGAGCTAGACACAAATTAGCATTGCAGATATATTTCAAAAGCTCATATTTGTGGAGGTTTAGTCCTCAAGTTTATGCATTTTTGTCCTTAAAAAGCTTATATTTGCAGGTTTTGTTCGCTGCTTCTCTATTGAAAAACAACAAGTCGATCCATGAAGCCTTAATGGCATCGATGGCAAAGAAGGCAAGTGTACTCGAGTGCATTCAAACAATCGAAAGTGCATCATAG

Protein sequence

>MS.gene059718.t1

MPYSSSLPKPYYNFYHNHHHHQTCFNINLPKFTTRASSSAAPGVDLNTLDSAIAKKDSNAVKEALDQLSEIGWAKKWSSQPYVSRRTTSLRELTTLGIKNAENLAIPSVRNDAAFLFTVVGTTGFLGILAGQLPGDWGFFVPYLIGSISLVVLGIGSTSPGLLQAAISSFSVVFPDYQERIARHEAAHFLIAYLLGLPILGYSLDIGKEHVNLIDDRLEKLLYSGQLDAKEIDRLAVVSMAGLAAEGLTYDKVVGQSADLFTLQRFINRTKPQLSKDQQQNLTRWAVLFAASLLKNNKSIHEALMASMAKKASVLECIQTIESAS