Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56514.t1 | XP_013456765.1 | 94.3 | 123 | 7 | 0 | 7 | 129 | 67 | 189 | 2.00E-53 | 218.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56514.t1 | A0A072UN48 | 94.3 | 123 | 7 | 0 | 7 | 129 | 67 | 189 | 1.4e-53 | 218.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050404 | MS.gene56514 | 0.840795 | 7.01E-58 | -1.69E-46 |
| MS.gene050406 | MS.gene56514 | 0.839233 | 1.79E-57 | -1.69E-46 |
| MS.gene051171 | MS.gene56514 | 0.824977 | 6.02E-54 | -1.69E-46 |
| MS.gene051240 | MS.gene56514 | 0.802293 | 6.01E-49 | -1.69E-46 |
| MS.gene051242 | MS.gene56514 | 0.826958 | 2.04E-54 | -1.69E-46 |
| MS.gene053971 | MS.gene56514 | 0.823275 | 1.51E-53 | -1.69E-46 |
| MS.gene056633 | MS.gene56514 | 0.824628 | 7.28E-54 | -1.69E-46 |
| MS.gene056664 | MS.gene56514 | 0.851778 | 7.11E-61 | -1.69E-46 |
| MS.gene058276 | MS.gene56514 | 0.837071 | 6.45E-57 | -1.69E-46 |
| MS.gene058746 | MS.gene56514 | 0.85097 | 1.20E-60 | -1.69E-46 |
| MS.gene059894 | MS.gene56514 | 0.837179 | 6.05E-57 | -1.69E-46 |
| MS.gene060407 | MS.gene56514 | 0.806692 | 7.27E-50 | -1.69E-46 |
| MS.gene061112 | MS.gene56514 | 0.80885 | 2.53E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56514.t1 | MTR_4g082330 | 94.574 | 129 | 7 | 0 | 1 | 129 | 61 | 189 | 2.49e-73 | 217 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGTGAGGGTGGCTTCTA+AGG | 0.266560 | 4.4:+30263501 | MS.gene56514:CDS |
| ACCGCGTTGCAGCCCGCGTC+GGG | 0.276137 | 4.4:-30263417 | None:intergenic |
| GGCTGCAACGCGGTTGGATT+GGG | 0.277741 | 4.4:+30263426 | MS.gene56514:CDS |
| GGGCTGCAACGCGGTTGGAT+TGG | 0.330424 | 4.4:+30263425 | MS.gene56514:CDS |
| ATCATCACGTCGCAAGGTTC+AGG | 0.345575 | 4.4:+30265424 | MS.gene56514:CDS |
| ATTCCGAACCGTCCACCTTC+CGG | 0.399012 | 4.4:-30263630 | None:intergenic |
| CGTAACTATGCAATGTGTGC+GGG | 0.429868 | 4.4:+30263526 | MS.gene56514:CDS |
| ACGGTTCGGAATATCTTCTT+AGG | 0.438601 | 4.4:+30263641 | MS.gene56514:CDS |
| TGGTCAATTACGTGTGTGGC+TGG | 0.441503 | 4.4:+30263556 | MS.gene56514:CDS |
| TCGCCGGAAGGTGGACGGTT+CGG | 0.463920 | 4.4:+30263627 | MS.gene56514:CDS |
| AACCGCGTTGCAGCCCGCGT+CGG | 0.468668 | 4.4:-30263418 | None:intergenic |
| GTTCAGGTGCATCGAATTAG+TGG | 0.469483 | 4.4:+30265440 | MS.gene56514:CDS |
| AACCTTGCGACGTGATGATA+AGG | 0.469622 | 4.4:-30265420 | None:intergenic |
| TGTAGCTGTGACGGCGGTGT+TGG | 0.471963 | 4.4:+30263582 | MS.gene56514:CDS |
| CGGCGGTGTTGGTTTACGTC+GGG | 0.474783 | 4.4:+30263593 | MS.gene56514:CDS |
| GACGCGGGCTGCAACGCGGT+TGG | 0.485105 | 4.4:+30263420 | MS.gene56514:CDS |
| TGGTTTACGTCGGGATTCAA+AGG | 0.489575 | 4.4:+30263602 | MS.gene56514:CDS |
| AACGGAACTTGACGCCGTCA+TGG | 0.509958 | 4.4:-30263374 | None:intergenic |
| TTCACCTTCCTCGCCACCAA+CGG | 0.518986 | 4.4:-30263392 | None:intergenic |
| TCGGGATTCAAAGGCGTCGC+CGG | 0.522229 | 4.4:+30263611 | MS.gene56514:CDS |
| ACGGCGTCAAGTTCCGTTGG+TGG | 0.523122 | 4.4:+30263379 | MS.gene56514:CDS |
| ACGGAACTTGACGCCGTCAT+GGG | 0.524511 | 4.4:-30263373 | None:intergenic |
| AGTTCCGTTGGTGGCGAGGA+AGG | 0.531811 | 4.4:+30263388 | MS.gene56514:CDS |
| GTCAAGTTCCGTTGGTGGCG+AGG | 0.531974 | 4.4:+30263384 | MS.gene56514:CDS |
| CCGCGTTGCAGCCCGCGTCG+GGG | 0.537525 | 4.4:-30263416 | None:intergenic |
| TGAATAAGATGTTGAGGGTG+CGG | 0.545742 | 4.4:+30263458 | MS.gene56514:CDS |
| TCAAAGGCGTCGCCGGAAGG+TGG | 0.547716 | 4.4:+30263618 | MS.gene56514:CDS |
| CCCCGACGCGGGCTGCAACG+CGG | 0.549132 | 4.4:+30263416 | MS.gene56514:CDS |
| GTGCAATATTAAGCAAGAGT+TGG | 0.550580 | 4.4:-30265385 | None:intergenic |
| GGCTGGAGCTGTAGCTGTGA+CGG | 0.555431 | 4.4:+30263573 | MS.gene56514:CDS |
| TAAGATGTTGAGGGTGCGGA+TGG | 0.556885 | 4.4:+30263462 | MS.gene56514:CDS |
| TGAAATGAATAAGATGTTGA+GGG | 0.563512 | 4.4:+30263453 | MS.gene56514:CDS |
| GGAAGGTGAAGCCCCGACGC+GGG | 0.567663 | 4.4:+30263405 | MS.gene56514:CDS |
| ATGACGGCGTCAAGTTCCGT+TGG | 0.572657 | 4.4:+30263376 | MS.gene56514:CDS |
| GATTCAAAGGCGTCGCCGGA+AGG | 0.574232 | 4.4:+30263615 | MS.gene56514:CDS |
| ACGGCGGTGTTGGTTTACGT+CGG | 0.576717 | 4.4:+30263592 | MS.gene56514:CDS |
| ATGAAATGAATAAGATGTTG+AGG | 0.577633 | 4.4:+30263452 | MS.gene56514:CDS |
| AGGCGTCGCCGGAAGGTGGA+CGG | 0.577749 | 4.4:+30263622 | MS.gene56514:CDS |
| GTAACTATGCAATGTGTGCG+GGG | 0.581011 | 4.4:+30263527 | MS.gene56514:CDS |
| AGCCTTATCATCACGTCGCA+AGG | 0.587604 | 4.4:+30265418 | MS.gene56514:CDS |
| GATGTTGAGGGTGCGGATGG+AGG | 0.596358 | 4.4:+30263465 | MS.gene56514:CDS |
| GCGGATGGAGGCTATGAGAG+TGG | 0.619387 | 4.4:+30263477 | MS.gene56514:CDS |
| TCGTAACTATGCAATGTGTG+CGG | 0.627278 | 4.4:+30263525 | MS.gene56514:CDS |
| TGGAGCTGTAGCTGTGACGG+CGG | 0.631922 | 4.4:+30263576 | MS.gene56514:CDS |
| TAACTATGCAATGTGTGCGG+GGG | 0.646393 | 4.4:+30263528 | MS.gene56514:CDS |
| AGGAAGGTGAAGCCCCGACG+CGG | 0.653291 | 4.4:+30263404 | MS.gene56514:CDS |
| CTATGAGAGTGGAAATTGTG+AGG | 0.658550 | 4.4:+30263488 | MS.gene56514:CDS |
| GAGAGTGGAAATTGTGAGGG+TGG | 0.678186 | 4.4:+30263492 | MS.gene56514:CDS |
| TATGAGAGTGGAAATTGTGA+GGG | 0.682385 | 4.4:+30263489 | MS.gene56514:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAATAAACTAAAGTAA+TGG | - | chr4.4:30265174-30265193 | None:intergenic | 10.0% |
| !!! | CTTTTATCAAATAAAAAAAA+AGG | - | chr4.4:30263815-30263834 | None:intergenic | 10.0% |
| !!! | CTTTTTTTTTATTTGATAAA+AGG | + | chr4.4:30263813-30263832 | MS.gene56514:intron | 10.0% |
| !!! | TAGAAATCAACATATTTTTT+CGG | - | chr4.4:30264488-30264507 | None:intergenic | 15.0% |
| !!! | TTTAATAGAATTTTGAATCA+AGG | + | chr4.4:30265283-30265302 | MS.gene56514:intron | 15.0% |
| !! | AAAGAATAAAATGCTTTCTT+TGG | - | chr4.4:30264775-30264794 | None:intergenic | 20.0% |
| !! | GAAGAAGAAATAATAATTTC+CGG | - | chr4.4:30263700-30263719 | None:intergenic | 20.0% |
| !!! | AGAAATCAACATATTTTTTC+GGG | - | chr4.4:30264487-30264506 | None:intergenic | 20.0% |
| !!! | TTATGCTTATCAAATTTTGT+TGG | + | chr4.4:30265349-30265368 | MS.gene56514:intron | 20.0% |
| ! | AAAAATAAGAACCTAGCATT+TGG | - | chr4.4:30264525-30264544 | None:intergenic | 25.0% |
| ! | AGTGTTAAATGTAATACACA+TGG | - | chr4.4:30264326-30264345 | None:intergenic | 25.0% |
| ! | ATCGTCTAATTACTATTGTT+AGG | + | chr4.4:30264849-30264868 | MS.gene56514:intron | 25.0% |
| ! | ATGAAATGAATAAGATGTTG+AGG | + | chr4.4:30263452-30263471 | MS.gene56514:CDS | 25.0% |
| ! | ATGAGGTGAGTATATATATA+TGG | + | chr4.4:30263671-30263690 | MS.gene56514:intron | 25.0% |
| ! | ATGCCTATAAATATGAGAAA+GGG | + | chr4.4:30264004-30264023 | MS.gene56514:intron | 25.0% |
| ! | GATAAGCATAACATTTAATG+TGG | - | chr4.4:30265340-30265359 | None:intergenic | 25.0% |
| ! | GATCAGAATTCTAATTACTA+TGG | - | chr4.4:30263737-30263756 | None:intergenic | 25.0% |
| ! | GTGTTAAATGTAATACACAT+GGG | - | chr4.4:30264325-30264344 | None:intergenic | 25.0% |
| ! | TATTGTGTTTGTATGTAGTT+TGG | - | chr4.4:30263851-30263870 | None:intergenic | 25.0% |
| ! | TGAAATGAATAAGATGTTGA+GGG | + | chr4.4:30263453-30263472 | MS.gene56514:CDS | 25.0% |
| ! | TGGCTTATTGAAAAAGTAAT+TGG | + | chr4.4:30265257-30265276 | MS.gene56514:intron | 25.0% |
| ! | TGTTAAATGTAATACACATG+GGG | - | chr4.4:30264324-30264343 | None:intergenic | 25.0% |
| ! | TTACCCTTTCTCATATTTAT+AGG | - | chr4.4:30264010-30264029 | None:intergenic | 25.0% |
| ! | TTATGCACTTTCAATTCATA+CGG | - | chr4.4:30263955-30263974 | None:intergenic | 25.0% |
| !!! | AGCTTCACAATTTTTTTTTC+TGG | + | chr4.4:30265121-30265140 | MS.gene56514:intron | 25.0% |
| AATAATGTTTGGAAATGGGA+GGG | - | chr4.4:30264802-30264821 | None:intergenic | 30.0% | |
| AGGTCAGTATTCCATAATTA+AGG | - | chr4.4:30264375-30264394 | None:intergenic | 30.0% | |
| ATACCATTATTGAGTCATGA+GGG | + | chr4.4:30264903-30264922 | MS.gene56514:intron | 30.0% | |
| ATTCCATAATTAAGGTTGAG+TGG | - | chr4.4:30264367-30264386 | None:intergenic | 30.0% | |
| CAGTATCTTTGGTTAATAAG+GGG | - | chr4.4:30264103-30264122 | None:intergenic | 30.0% | |
| CATGCCTATAAATATGAGAA+AGG | + | chr4.4:30264003-30264022 | MS.gene56514:intron | 30.0% | |
| CATTTAACACTTCCTCTATA+CGG | + | chr4.4:30264335-30264354 | MS.gene56514:intron | 30.0% | |
| CTGGAATAATGTTTGGAAAT+GGG | - | chr4.4:30264806-30264825 | None:intergenic | 30.0% | |
| GAGTATATATATATGGCATC+CGG | + | chr4.4:30263678-30263697 | MS.gene56514:intron | 30.0% | |
| GAGTGAAATTTGTATATCGA+TGG | + | chr4.4:30265237-30265256 | MS.gene56514:intron | 30.0% | |
| GCAGTATCTTTGGTTAATAA+GGG | - | chr4.4:30264104-30264123 | None:intergenic | 30.0% | |
| GTCTAATTACTATTGTTAGG+AGG | + | chr4.4:30264852-30264871 | MS.gene56514:intron | 30.0% | |
| TATGCACTTTCAATTCATAC+GGG | - | chr4.4:30263954-30263973 | None:intergenic | 30.0% | |
| TCAAGCAAATGAAATTGTTG+TGG | - | chr4.4:30264640-30264659 | None:intergenic | 30.0% | |
| TGCAGTATCTTTGGTTAATA+AGG | - | chr4.4:30264105-30264124 | None:intergenic | 30.0% | |
| TGTTATAGCTAGTAATCACA+AGG | - | chr4.4:30264300-30264319 | None:intergenic | 30.0% | |
| TTTCCACTCAACCTTAATTA+TGG | + | chr4.4:30264361-30264380 | MS.gene56514:intron | 30.0% | |
| ! | AATCTTCGCTTCATATTTTG+TGG | - | chr4.4:30264677-30264696 | None:intergenic | 30.0% |
| ! | ATCTTCGCTTCATATTTTGT+GGG | - | chr4.4:30264676-30264695 | None:intergenic | 30.0% |
| ! | TTTTTCTAATCAGCCTAATC+AGG | - | chr4.4:30264600-30264619 | None:intergenic | 30.0% |
| !! | TAATGATGGATTGAAGACTA+AGG | - | chr4.4:30264744-30264763 | None:intergenic | 30.0% |
| !! | TGAGTTTTTAGAGATGAATC+AGG | - | chr4.4:30264266-30264285 | None:intergenic | 30.0% |
| AAAATGTTAACACAATCCGC+TGG | + | chr4.4:30263906-30263925 | MS.gene56514:intron | 35.0% | |
| ATAATGTTTGGAAATGGGAG+GGG | - | chr4.4:30264801-30264820 | None:intergenic | 35.0% | |
| CATGATAAGGCGATTAATGA+GGG | + | chr4.4:30264043-30264062 | MS.gene56514:intron | 35.0% | |
| CATGTCAATCCTTCATGATA+AGG | + | chr4.4:30264030-30264049 | MS.gene56514:intron | 35.0% | |
| CATTAATCGCCTTATCATGA+AGG | - | chr4.4:30264042-30264061 | None:intergenic | 35.0% | |
| CCATTTCCAAACATTATTCC+AGG | + | chr4.4:30264804-30264823 | MS.gene56514:intron | 35.0% | |
| CCGAAAAATAGCCCAAATTT+CGG | + | chr4.4:30264219-30264238 | MS.gene56514:intron | 35.0% | |
| CCTGGAATAATGTTTGGAAA+TGG | - | chr4.4:30264807-30264826 | None:intergenic | 35.0% | |
| GAAAATCAAAGATGAGTCGA+GGG | + | chr4.4:30264074-30264093 | MS.gene56514:intron | 35.0% | |
| GAATAATGTTTGGAAATGGG+AGG | - | chr4.4:30264803-30264822 | None:intergenic | 35.0% | |
| GATACCATTATTGAGTCATG+AGG | + | chr4.4:30264902-30264921 | MS.gene56514:intron | 35.0% | |
| GGTGTTCATGTCAAAACTTT+GGG | - | chr4.4:30264201-30264220 | None:intergenic | 35.0% | |
| GTGCAATATTAAGCAAGAGT+TGG | - | chr4.4:30265388-30265407 | None:intergenic | 35.0% | |
| GTGTTCATGTCAAAACTTTG+GGG | - | chr4.4:30264200-30264219 | None:intergenic | 35.0% | |
| TACCATTATTGAGTCATGAG+GGG | + | chr4.4:30264904-30264923 | MS.gene56514:intron | 35.0% | |
| TATGAGAGTGGAAATTGTGA+GGG | + | chr4.4:30263489-30263508 | MS.gene56514:CDS | 35.0% | |
| TATTTATAGGCATGCAAACC+AGG | - | chr4.4:30263997-30264016 | None:intergenic | 35.0% | |
| TCATGATAAGGCGATTAATG+AGG | + | chr4.4:30264042-30264061 | MS.gene56514:intron | 35.0% | |
| TCTTCTTAGGCAAAAAGATG+AGG | + | chr4.4:30263654-30263673 | MS.gene56514:CDS | 35.0% | |
| TGTCTACCTGGAATAATGTT+TGG | - | chr4.4:30264813-30264832 | None:intergenic | 35.0% | |
| TGTGAATATGTCATGCGAAA+AGG | + | chr4.4:30265314-30265333 | MS.gene56514:intron | 35.0% | |
| TGTTCATGTCAAAACTTTGG+GGG | - | chr4.4:30264199-30264218 | None:intergenic | 35.0% | |
| TTCACATGTGACTACATGAA+GGG | - | chr4.4:30265066-30265085 | None:intergenic | 35.0% | |
| TTGTATGTAGTTTGGCCTAA+CGG | - | chr4.4:30263843-30263862 | None:intergenic | 35.0% | |
| ! | ATCTCTAAAAACTCATCCAC+AGG | + | chr4.4:30264271-30264290 | MS.gene56514:intron | 35.0% |
| ! | CTTTGGCTGCTTTATAATGA+TGG | - | chr4.4:30264758-30264777 | None:intergenic | 35.0% |
| ! | GTGGGAATTTTGCATACATT+GGG | + | chr4.4:30264402-30264421 | MS.gene56514:intron | 35.0% |
| ! | TGTGGGAATTTTGCATACAT+TGG | + | chr4.4:30264401-30264420 | MS.gene56514:intron | 35.0% |
| !!! | CCGAAATTTGGGCTATTTTT+CGG | - | chr4.4:30264222-30264241 | None:intergenic | 35.0% |
| !!! | TTTTTTCATCCAAGTGAGAG+TGG | + | chr4.4:30265033-30265052 | MS.gene56514:intron | 35.0% |
| AACCTAGCATTTGGCATATC+TGG | - | chr4.4:30264516-30264535 | None:intergenic | 40.0% | |
| AATACTGACCTTGCAAGTGT+GGG | + | chr4.4:30264384-30264403 | MS.gene56514:intron | 40.0% | |
| AGAATCTCTAGATCTGTGAG+TGG | - | chr4.4:30264556-30264575 | None:intergenic | 40.0% | |
| CACATTGATGTATGTCTACC+TGG | - | chr4.4:30264825-30264844 | None:intergenic | 40.0% | |
| CATTCCTTAAGCTCCTGATT+AGG | + | chr4.4:30264584-30264603 | MS.gene56514:intron | 40.0% | |
| CGAAAATCAAAGATGAGTCG+AGG | + | chr4.4:30264073-30264092 | MS.gene56514:intron | 40.0% | |
| CGGTGTTCATGTCAAAACTT+TGG | - | chr4.4:30264202-30264221 | None:intergenic | 40.0% | |
| CTAATCAGGAGCTTAAGGAA+TGG | - | chr4.4:30264586-30264605 | None:intergenic | 40.0% | |
| CTATGAGAGTGGAAATTGTG+AGG | + | chr4.4:30263488-30263507 | MS.gene56514:CDS | 40.0% | |
| CTATTTAGATCATCCACCAG+CGG | - | chr4.4:30263925-30263944 | None:intergenic | 40.0% | |
| CTTCACATGTGACTACATGA+AGG | - | chr4.4:30265067-30265086 | None:intergenic | 40.0% | |
| GCTTTCTCTTGAATCTGACT+CGG | - | chr4.4:30264132-30264151 | None:intergenic | 40.0% | |
| TCACATGTGACTACATGAAG+GGG | - | chr4.4:30265065-30265084 | None:intergenic | 40.0% | |
| TCGTAACTATGCAATGTGTG+CGG | + | chr4.4:30263525-30263544 | MS.gene56514:CDS | 40.0% | |
| TGAACATGTTGTATGTAGCG+AGG | - | chr4.4:30264452-30264471 | None:intergenic | 40.0% | |
| TGAATAAGATGTTGAGGGTG+CGG | + | chr4.4:30263458-30263477 | MS.gene56514:CDS | 40.0% | |
| TTAGAGATGAATCAGGTGTG+TGG | - | chr4.4:30264259-30264278 | None:intergenic | 40.0% | |
| ! | ACGGTTCGGAATATCTTCTT+AGG | + | chr4.4:30263641-30263660 | MS.gene56514:CDS | 40.0% |
| ! | AGATATCCTAAGTATCGTCG+CGG | + | chr4.4:30263763-30263782 | MS.gene56514:intron | 40.0% |
| !! | GTTTTGGTCAATTACGTGTG+TGG | + | chr4.4:30263552-30263571 | MS.gene56514:CDS | 40.0% |
| AACCTTGCGACGTGATGATA+AGG | - | chr4.4:30265423-30265442 | None:intergenic | 45.0% | |
| AATTGTGAGGGTGGCTTCTA+AGG | + | chr4.4:30263501-30263520 | MS.gene56514:CDS | 45.0% | |
| ACTCTGCTCTTGAACTTGCA+TGG | - | chr4.4:30264172-30264191 | None:intergenic | 45.0% | |
| AGCCAGATATGCCAAATGCT+AGG | + | chr4.4:30264511-30264530 | MS.gene56514:intron | 45.0% | |
| AGTCCGGTGAATCATCATGT+TGG | + | chr4.4:30264927-30264946 | MS.gene56514:intron | 45.0% | |
| ATCTCTAGATCTGTGAGTGG+AGG | - | chr4.4:30264553-30264572 | None:intergenic | 45.0% | |
| ATGTTAACACAATCCGCTGG+TGG | + | chr4.4:30263909-30263928 | MS.gene56514:intron | 45.0% | |
| CGTAACTATGCAATGTGTGC+GGG | + | chr4.4:30263526-30263545 | MS.gene56514:CDS | 45.0% | |
| CTCCCCTCATGACTCAATAA+TGG | - | chr4.4:30264909-30264928 | None:intergenic | 45.0% | |
| CTCGGCTATTGCAGTATCTT+TGG | - | chr4.4:30264114-30264133 | None:intergenic | 45.0% | |
| CTCTGCTCTTGAACTTGCAT+GGG | - | chr4.4:30264171-30264190 | None:intergenic | 45.0% | |
| CTTGAACTTGCATGGGACAA+AGG | - | chr4.4:30264164-30264183 | None:intergenic | 45.0% | |
| GAATACTGACCTTGCAAGTG+TGG | + | chr4.4:30264383-30264402 | MS.gene56514:intron | 45.0% | |
| GATGAATCAGGTGTGTGGTT+AGG | - | chr4.4:30264254-30264273 | None:intergenic | 45.0% | |
| GCAAAATTCCCACACTTGCA+AGG | - | chr4.4:30264395-30264414 | None:intergenic | 45.0% | |
| GGTCCAACATGATGATTCAC+CGG | - | chr4.4:30264933-30264952 | None:intergenic | 45.0% | |
| GTAACTATGCAATGTGTGCG+GGG | + | chr4.4:30263527-30263546 | MS.gene56514:CDS | 45.0% | |
| GTTCAGGTGCATCGAATTAG+TGG | + | chr4.4:30265440-30265459 | MS.gene56514:CDS | 45.0% | |
| TAACTATGCAATGTGTGCGG+GGG | + | chr4.4:30263528-30263547 | MS.gene56514:CDS | 45.0% | |
| TCAGCCTAATCAGGAGCTTA+AGG | - | chr4.4:30264591-30264610 | None:intergenic | 45.0% | |
| TCGACATGAGAAGAACGCAA+AGG | + | chr4.4:30264696-30264715 | MS.gene56514:intron | 45.0% | |
| TCTCTAGATCTGTGAGTGGA+GGG | - | chr4.4:30264552-30264571 | None:intergenic | 45.0% | |
| TGGTTTACGTCGGGATTCAA+AGG | + | chr4.4:30263602-30263621 | MS.gene56514:CDS | 45.0% | |
| TTGATAAAAGGGACGCCGTT+AGG | + | chr4.4:30263825-30263844 | MS.gene56514:intron | 45.0% | |
| !! | GAGTGGAAAGTACCGTATAG+AGG | - | chr4.4:30264350-30264369 | None:intergenic | 45.0% |
| !! | TAGCGAGGCAGTCTTATTGA+TGG | - | chr4.4:30264437-30264456 | None:intergenic | 45.0% |
| !!! | AGGTGGTTTTGGCCGAAATT+TGG | - | chr4.4:30264234-30264253 | None:intergenic | 45.0% |
| !!! | GGTGGTTTTGGCCGAAATTT+GGG | - | chr4.4:30264233-30264252 | None:intergenic | 45.0% |
| !!! | TTTAGTTTATTTAATTAAAA+CGG | + | chr4.4:30265178-30265197 | MS.gene56514:intron | 5.0% |
| !!! | TTTTTTTTTATTTGATAAAA+GGG | + | chr4.4:30263814-30263833 | MS.gene56514:intron | 5.0% |
| AGTAATCACAAGGCTGCCTG+TGG | - | chr4.4:30264290-30264309 | None:intergenic | 50.0% | |
| ATCATCACGTCGCAAGGTTC+AGG | + | chr4.4:30265424-30265443 | MS.gene56514:CDS | 50.0% | |
| ATTGAGTCATGAGGGGAGTC+CGG | + | chr4.4:30264911-30264930 | MS.gene56514:intron | 50.0% | |
| CTCACTTGAGTGCTTGCTCT+TGG | - | chr4.4:30264954-30264973 | None:intergenic | 50.0% | |
| GAATCAGGTGTGTGGTTAGG+TGG | - | chr4.4:30264251-30264270 | None:intergenic | 50.0% | |
| GAGAGTGGAAATTGTGAGGG+TGG | + | chr4.4:30263492-30263511 | MS.gene56514:CDS | 50.0% | |
| GGGAACTAACCACTCTCACT+TGG | - | chr4.4:30265045-30265064 | None:intergenic | 50.0% | |
| TGGTCAATTACGTGTGTGGC+TGG | + | chr4.4:30263556-30263575 | MS.gene56514:CDS | 50.0% | |
| ! | AGCCTTATCATCACGTCGCA+AGG | + | chr4.4:30265418-30265437 | MS.gene56514:CDS | 50.0% |
| ! | CAAGTTCGATCGATTCTGCG+CGG | - | chr4.4:30265149-30265168 | None:intergenic | 50.0% |
| ! | GGTGTGTGGTTAGGTGGTTT+TGG | - | chr4.4:30264245-30264264 | None:intergenic | 50.0% |
| ! | TAAGATGTTGAGGGTGCGGA+TGG | + | chr4.4:30263462-30263481 | MS.gene56514:CDS | 50.0% |
| ATGACGGCGTCAAGTTCCGT+TGG | + | chr4.4:30263376-30263395 | MS.gene56514:CDS | 55.0% | |
| ATTCCGAACCGTCCACCTTC+CGG | - | chr4.4:30263633-30263652 | None:intergenic | 55.0% | |
| CGCGCAGAATCGATCGAACT+TGG | + | chr4.4:30265147-30265166 | MS.gene56514:intron | 55.0% | |
| TTCACCTTCCTCGCCACCAA+CGG | - | chr4.4:30263395-30263414 | None:intergenic | 55.0% | |
| ! | CTAAGTATCGTCGCGGCGTA+GGG | + | chr4.4:30263770-30263789 | MS.gene56514:intron | 55.0% |
| ! | TAAGTATCGTCGCGGCGTAG+GGG | + | chr4.4:30263771-30263790 | MS.gene56514:intron | 55.0% |
| !! | ACGGCGGTGTTGGTTTACGT+CGG | + | chr4.4:30263592-30263611 | MS.gene56514:CDS | 55.0% |
| !! | CAGGTAGCTGACTGACTTGC+GGG | - | chr4.4:30263978-30263997 | None:intergenic | 55.0% |
| !! | CCAGGTAGCTGACTGACTTG+CGG | - | chr4.4:30263979-30263998 | None:intergenic | 55.0% |
| ACGGCGTCAAGTTCCGTTGG+TGG | + | chr4.4:30263379-30263398 | MS.gene56514:CDS | 60.0% | |
| CCGCAAGTCAGTCAGCTACC+TGG | + | chr4.4:30263976-30263995 | MS.gene56514:intron | 60.0% | |
| CCTACGCCGCGACGATACTT+AGG | - | chr4.4:30263772-30263791 | None:intergenic | 60.0% | |
| GCGGATGGAGGCTATGAGAG+TGG | + | chr4.4:30263477-30263496 | MS.gene56514:CDS | 60.0% | |
| GGCTGCAACGCGGTTGGATT+GGG | + | chr4.4:30263426-30263445 | MS.gene56514:CDS | 60.0% | |
| GGCTGGAGCTGTAGCTGTGA+CGG | + | chr4.4:30263573-30263592 | MS.gene56514:CDS | 60.0% | |
| TGGAGCTGTAGCTGTGACGG+CGG | + | chr4.4:30263576-30263595 | MS.gene56514:CDS | 60.0% | |
| TGTAGCTGTGACGGCGGTGT+TGG | + | chr4.4:30263582-30263601 | MS.gene56514:CDS | 60.0% | |
| ! | CCTAAGTATCGTCGCGGCGT+AGG | + | chr4.4:30263769-30263788 | MS.gene56514:intron | 60.0% |
| ! | GATGTTGAGGGTGCGGATGG+AGG | + | chr4.4:30263465-30263484 | MS.gene56514:CDS | 60.0% |
| !! | AGTTCCGTTGGTGGCGAGGA+AGG | + | chr4.4:30263388-30263407 | MS.gene56514:CDS | 60.0% |
| !! | CGGCGGTGTTGGTTTACGTC+GGG | + | chr4.4:30263593-30263612 | MS.gene56514:CDS | 60.0% |
| !! | GATTCAAAGGCGTCGCCGGA+AGG | + | chr4.4:30263615-30263634 | MS.gene56514:CDS | 60.0% |
| !! | GTCAAGTTCCGTTGGTGGCG+AGG | + | chr4.4:30263384-30263403 | MS.gene56514:CDS | 60.0% |
| !! | TCGGGATTCAAAGGCGTCGC+CGG | + | chr4.4:30263611-30263630 | MS.gene56514:CDS | 60.0% |
| !!! | CAATGTGTGCGGGGGCGTTT+TGG | + | chr4.4:30263536-30263555 | MS.gene56514:CDS | 60.0% |
| AGGAAGGTGAAGCCCCGACG+CGG | + | chr4.4:30263404-30263423 | MS.gene56514:CDS | 65.0% | |
| GGGCTGCAACGCGGTTGGAT+TGG | + | chr4.4:30263425-30263444 | MS.gene56514:CDS | 65.0% | |
| TCGCCGGAAGGTGGACGGTT+CGG | + | chr4.4:30263627-30263646 | MS.gene56514:CDS | 65.0% | |
| !! | TCAAAGGCGTCGCCGGAAGG+TGG | + | chr4.4:30263618-30263637 | MS.gene56514:CDS | 65.0% |
| AACCGCGTTGCAGCCCGCGT+CGG | - | chr4.4:30263421-30263440 | None:intergenic | 70.0% | |
| CGTCGCGGCGTAGGGGCTTT+GGG | + | chr4.4:30263778-30263797 | MS.gene56514:intron | 70.0% | |
| GGAAGGTGAAGCCCCGACGC+GGG | + | chr4.4:30263405-30263424 | MS.gene56514:CDS | 70.0% | |
| TCGTCGCGGCGTAGGGGCTT+TGG | + | chr4.4:30263777-30263796 | MS.gene56514:intron | 70.0% | |
| ! | AGGCGTCGCCGGAAGGTGGA+CGG | + | chr4.4:30263622-30263641 | MS.gene56514:CDS | 70.0% |
| ACCGCGTTGCAGCCCGCGTC+GGG | - | chr4.4:30263420-30263439 | None:intergenic | 75.0% | |
| ! | GACGCGGGCTGCAACGCGGT+TGG | + | chr4.4:30263420-30263439 | MS.gene56514:CDS | 75.0% |
| ! | CCGCGTTGCAGCCCGCGTCG+GGG | - | chr4.4:30263419-30263438 | None:intergenic | 80.0% |
| !! | CCCCGACGCGGGCTGCAACG+CGG | + | chr4.4:30263416-30263435 | MS.gene56514:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 30263376 | 30265466 | 30263376 | ID=MS.gene56514 |
| chr4.4 | mRNA | 30263376 | 30265466 | 30263376 | ID=MS.gene56514.t1;Parent=MS.gene56514 |
| chr4.4 | exon | 30263376 | 30263675 | 30263376 | ID=MS.gene56514.t1.exon1;Parent=MS.gene56514.t1 |
| chr4.4 | CDS | 30263376 | 30263675 | 30263376 | ID=cds.MS.gene56514.t1;Parent=MS.gene56514.t1 |
| chr4.4 | exon | 30265377 | 30265466 | 30265377 | ID=MS.gene56514.t1.exon2;Parent=MS.gene56514.t1 |
| chr4.4 | CDS | 30265377 | 30265466 | 30265377 | ID=cds.MS.gene56514.t1;Parent=MS.gene56514.t1 |
| Gene Sequence |
| Protein sequence |
