AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061112


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061112.t1 MTR_4g122180 93.651 63 4 0 1 63 1 63 2.82e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 162 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGGTTCTGGTGGAGGCTT+TGG 0.168724 8.3:-6687882 MS.gene061112:CDS
GGTGGTAAAGGTGGTGGTTT+TGG 0.191403 8.3:-6688266 MS.gene061112:CDS
GAGGCGGTGCTGGCGGTGAT+AGG 0.214939 8.3:-6687746 MS.gene061112:CDS
GAGGTTCTGGTGGAGGCTTT+GGG 0.225401 8.3:-6687881 MS.gene061112:CDS
GGCGGCGCAGGTGGTGGTTT+TGG 0.227259 8.3:-6687768 MS.gene061112:CDS
GGTGGTGCCGGCGGAGGTTT+TGG 0.242299 8.3:-6688380 MS.gene061112:CDS
GGAGGTGCTGGTGGAGGCTT+TGG 0.247051 8.3:-6687948 MS.gene061112:CDS
GGTGGAGTAGGTGGAGGTTC+TGG 0.249484 8.3:-6687894 MS.gene061112:CDS
GGAGGCTTTGGAGGTGGTGC+TGG 0.271782 8.3:-6687936 MS.gene061112:CDS
GGAGGTGGTGGTGCAGGTGG+TGG 0.278928 8.3:-6688206 MS.gene061112:CDS
GGTGGTGCAGGTGGTGGAAT+TGG 0.280923 8.3:-6688200 MS.gene061112:CDS
GTGGACATGGTGGTGGAATC+GGG 0.282878 8.3:-6688175 MS.gene061112:CDS
GGTGGTGGAGGTGCAGGTGG+AGG 0.286321 8.3:-6687846 MS.gene061112:CDS
GGAGGCATTGGAGGTGGTTC+TGG 0.293598 8.3:-6688014 MS.gene061112:CDS
GGAGGGGCTGGTGGAGGATT+TGG 0.298673 8.3:-6687828 MS.gene061112:CDS
GGTGGCTTTGGAGGCGGTGC+TGG 0.301658 8.3:-6688314 MS.gene061112:CDS
GGTGGTGCTGGTGGAGGCTT+TGG 0.304030 8.3:-6687792 MS.gene061112:CDS
GGTGGTGCTGGAGGTGGTGG+AGG 0.307451 8.3:-6687858 MS.gene061112:CDS
GCAGGTGGAGGGGCTGGTGG+AGG 0.307907 8.3:-6687834 MS.gene061112:CDS
CTTGGACACGGTGGTGGCTT+TGG 0.308545 8.3:-6688326 MS.gene061112:CDS
GCTGGAGGTGGTGGAGGTGC+AGG 0.312015 8.3:-6687852 MS.gene061112:CDS
GGAGGTGCAGGTGGAGGGGC+TGG 0.313809 8.3:-6687840 MS.gene061112:CDS
GGTGGACATGGTGGTGGAAT+CGG 0.315986 8.3:-6688176 MS.gene061112:CDS
GGAGGCATTGGAGGTGGTGC+TGG 0.316985 8.3:-6688110 MS.gene061112:CDS
GGTGCAGGTGGAGGGGCTGG+TGG 0.326951 8.3:-6687837 MS.gene061112:CDS
GGAGGAGCCGGTGGAGGCAT+TGG 0.335786 8.3:-6688026 MS.gene061112:CDS
CTAGGTGGAGGTGGTGGTGC+AGG 0.336652 8.3:-6688212 MS.gene061112:CDS
GGTGCGGGTGGTGGAGTAGG+TGG 0.339678 8.3:-6687903 MS.gene061112:CDS
ATTGGAGGTGGTGCTGGAAC+TGG 0.341197 8.3:-6688104 MS.gene061112:CDS
GGCTCTGGTGGAGGCATTGG+AGG 0.343974 8.3:-6688119 MS.gene061112:CDS
GGAGGTGCCGGAGGTGGCTT+CGG 0.344469 8.3:-6688080 MS.gene061112:CDS
GGTGCAGGTGGAGGTGCTGG+TGG 0.345247 8.3:-6687957 MS.gene061112:CDS
GGTGGTGCAGGTGGAGGCTA+TGG 0.345394 8.3:-6688290 MS.gene061112:CDS
GGTGGAAGCGGTGGTGGTAT+AGG 0.348764 8.3:-6688152 MS.gene061112:CDS
GGTGGTGCAGGCGGAGGAAT+TGG 0.353206 8.3:-6687990 MS.gene061112:CDS
GCCGGTGGAGGTGCGGGTGG+TGG 0.354224 8.3:-6687912 MS.gene061112:CDS
GGTGCAGGCGGAGGAATTGG+TGG 0.354368 8.3:-6687987 MS.gene061112:CDS
TGGTGGAGGTGCAGGTGGAG+GGG 0.360765 8.3:-6687844 MS.gene061112:CDS
GGTGGTCATGGTGGTGGACT+AGG 0.370304 8.3:-6688230 MS.gene061112:CDS
GGAGGATTTGGCGGTGGTGC+CGG 0.375820 8.3:-6687816 MS.gene061112:CDS
ATTGGAGGTGGTTCTGGTGG+TGG 0.375920 8.3:-6688008 MS.gene061112:CDS
AGGTTCTGGTGGAGGCTTTG+GGG 0.376982 8.3:-6687880 MS.gene061112:CDS
GTGGTGGAGGTGCAGGTGGA+GGG 0.378169 8.3:-6687845 MS.gene061112:CDS
GGTGGTGCCGGAGGTGGTGC+TGG 0.378771 8.3:-6687804 MS.gene061112:CDS
GGCGGTGCTGGAGGTGGTGC+AGG 0.379929 8.3:-6688302 MS.gene061112:CDS
GGTGGTTCTGGTGGTGGTGC+AGG 0.379970 8.3:-6688002 MS.gene061112:CDS
GCTGGAGCCGGTGGAGGTGC+GGG 0.382283 8.3:-6687918 MS.gene061112:CDS
GGAAGCGGTGGTGGTATAGG+TGG 0.383824 8.3:-6688149 MS.gene061112:CDS
ATAGGTGGAGGAGGAGGCTC+TGG 0.384386 8.3:-6688134 MS.gene061112:CDS
GGTGGTGTAGGTGGAGGAGG+AGG 0.384699 8.3:-6688044 MS.gene061112:CDS
TTTGGAGGCGGCGCAGGTGG+TGG 0.386490 8.3:-6687774 MS.gene061112:CDS
GTGATATTTGCATTGGTGAT+AGG 0.388416 8.3:-6688470 MS.gene061112:CDS
GGAGGCTCTGGTGGAGGCAT+TGG 0.389075 8.3:-6688122 MS.gene061112:CDS
GGAGGCTTTGGAGGCGGCGC+AGG 0.390194 8.3:-6687780 MS.gene061112:CDS
GGTGGCGTGGGTGGTGGTGC+CGG 0.391358 8.3:-6688392 MS.gene061112:CDS
GGCGGCAGTGGTGGAGGTGT+TGG 0.392236 8.3:-6688356 MS.gene061112:CDS
GGTGGTGCTGGAACTGGTGG+AGG 0.394982 8.3:-6688098 MS.gene061112:CDS
GCAGGTGGAGGTGCTGGTGG+AGG 0.397464 8.3:-6687954 MS.gene061112:CDS
TTTGGAGGTGGTGCTGGAGC+CGG 0.398435 8.3:-6687930 MS.gene061112:CDS
GGAGGTGTTGGAGGAGGACT+TGG 0.400513 8.3:-6688344 MS.gene061112:CDS
GGTGCAGGTGGTGGAATTGG+AGG 0.400892 8.3:-6688197 MS.gene061112:CDS
GCTGGAACTGGTGGAGGTGC+CGG 0.407125 8.3:-6688092 MS.gene061112:CDS
TGGACATGGTGGTGGAATCG+GGG 0.412271 8.3:-6688174 MS.gene061112:CDS
GGTGGAGGTGGCGTGGGTGG+TGG 0.413145 8.3:-6688398 MS.gene061112:CDS
GCTGGAGGTGGTGCAGGTGG+AGG 0.414524 8.3:-6688296 MS.gene061112:CDS
AACTTTGGTGGAGGTGGCGT+GGG 0.417311 8.3:-6688404 MS.gene061112:CDS
GCCGGAGGTGGTGCTGGTGG+AGG 0.419981 8.3:-6687798 MS.gene061112:CDS
GGAGGTGCGGGTGGTGGAGT+AGG 0.421790 8.3:-6687906 MS.gene061112:CDS
GGAGGCTATGGAGGTGGTAA+AGG 0.422470 8.3:-6688278 MS.gene061112:CDS
GCTGGTGGAGGCTTTGGAGG+TGG 0.423825 8.3:-6687942 MS.gene061112:CDS
GCCGGAGGTGGCTTCGGAGG+TGG 0.423974 8.3:-6688074 MS.gene061112:CDS
GGTGGTGCTGGAGCCGGTGG+AGG 0.424543 8.3:-6687924 MS.gene061112:CDS
TCTGGTGGTGGTGCAGGCGG+AGG 0.424817 8.3:-6687996 MS.gene061112:CDS
TCTGGTGGAGGCATTGGAGG+TGG 0.426622 8.3:-6688116 MS.gene061112:CDS
ACTGGTGGAGGTGCCGGAGG+TGG 0.429321 8.3:-6688086 MS.gene061112:CDS
TGCTGGAGCCGGTGGAGGTG+CGG 0.429374 8.3:-6687919 MS.gene061112:CDS
GGTGGTGGTGTAGGTGGAGG+AGG 0.430021 8.3:-6688047 MS.gene061112:CDS
TTTGGTGGCGGCAGTGGTGG+AGG 0.430606 8.3:-6688362 MS.gene061112:CDS
TTTGGAGGCGGTGCTGGAGG+TGG 0.431384 8.3:-6688308 MS.gene061112:CDS
GGGGCTGGTGGAGGATTTGG+CGG 0.433056 8.3:-6687825 MS.gene061112:CDS
GGAGGTGGTGGAGGTGCAGG+TGG 0.434036 8.3:-6687849 MS.gene061112:CDS
GGAGGAGGAGGAGCCGGTGG+AGG 0.434108 8.3:-6688032 MS.gene061112:CDS
GGTAATGGTGGTGGTGTAGG+TGG 0.435420 8.3:-6688053 MS.gene061112:CDS
GGTGGCTTCGGAGGTGGTAA+TGG 0.436322 8.3:-6688068 MS.gene061112:CDS
GGCTTTGGAGGCGGCGCAGG+TGG 0.437347 8.3:-6687777 MS.gene061112:CDS
ATTGGAGGTGGACATGGTGG+TGG 0.437569 8.3:-6688182 MS.gene061112:CDS
GCCGGTGGAGGCATTGGAGG+TGG 0.439875 8.3:-6688020 MS.gene061112:CDS
GGTGCTGGTGGAGGCTTTGG+AGG 0.439963 8.3:-6687945 MS.gene061112:CDS
GGTGGACTAGGTGGAGGTGG+TGG 0.441020 8.3:-6688218 MS.gene061112:CDS
TTTGGCGGTGGTGCCGGAGG+TGG 0.443454 8.3:-6687810 MS.gene061112:CDS
GTGGGTGGTGGTGCCGGCGG+AGG 0.443554 8.3:-6688386 MS.gene061112:CDS
GGTGGTAATGGTGGTGGTGT+AGG 0.443950 8.3:-6688056 MS.gene061112:CDS
GGACACGGTGGTGGCTTTGG+AGG 0.444375 8.3:-6688323 MS.gene061112:CDS
GATGAATTTGTTGACAACTT+TGG 0.444899 8.3:-6688419 MS.gene061112:CDS
GTAGGTGGAGGTTCTGGTGG+AGG 0.445601 8.3:-6687888 MS.gene061112:CDS
TGCAGGCGGAGGAATTGGTG+GGG 0.447716 8.3:-6687985 MS.gene061112:CDS
CACGGTGGTGGCTTTGGAGG+CGG 0.457544 8.3:-6688320 MS.gene061112:CDS
GGAGGAATTGGAGGTGGTCA+TGG 0.457657 8.3:-6688242 MS.gene061112:CDS
ATTGGAGGTGGTCATGGTGG+TGG 0.460184 8.3:-6688236 MS.gene061112:CDS
GGACATGGTGGTGGAATCGG+GGG 0.464354 8.3:-6688173 MS.gene061112:CDS
AGTGGTGGAGGTGTTGGAGG+AGG 0.467091 8.3:-6688350 MS.gene061112:CDS
GGTGGTGGACTAGGTGGAGG+TGG 0.467193 8.3:-6688221 MS.gene061112:CDS
GGAGGACTTGGACACGGTGG+TGG 0.468197 8.3:-6688332 MS.gene061112:CDS
GGTGGAGGTGGTGGTGCAGG+TGG 0.468428 8.3:-6688209 MS.gene061112:CDS
GCTGGTGGAGGCTTTGGAGG+CGG 0.469021 8.3:-6687786 MS.gene061112:CDS
GGTTCTGGTGGAGGCTTTGG+GGG 0.469845 8.3:-6687879 MS.gene061112:CDS
GGAGGAGGAGGCTCTGGTGG+AGG 0.470574 8.3:-6688128 MS.gene061112:CDS
GCCTCCACCAGCACCACCTC+CGG 0.471055 8.3:+6687797 None:intergenic
GGAGTAGGTGGAGGTTCTGG+TGG 0.472931 8.3:-6687891 MS.gene061112:CDS
GTAGGTGGAGGAGGAGGAGC+CGG 0.473704 8.3:-6688038 MS.gene061112:CDS
GGAGCCGGTGGAGGCATTGG+AGG 0.473727 8.3:-6688023 MS.gene061112:CDS
AATGGTGGTGGTGTAGGTGG+AGG 0.474194 8.3:-6688050 MS.gene061112:CDS
GGTGCAGGTGGAGGCTATGG+AGG 0.476723 8.3:-6688287 MS.gene061112:CDS
AGGCGGTGCTGGCGGTGATA+GGG 0.477052 8.3:-6687745 None:intergenic
ACCACCTCCGAAGCCACCTC+CGG 0.482538 8.3:+6688073 None:intergenic
GGTGGAATTGGAGGTGGACA+TGG 0.486509 8.3:-6688188 MS.gene061112:CDS
GGTGGAGGAGGAGGAGCCGG+TGG 0.489321 8.3:-6688035 MS.gene061112:CDS
GTGCAGGCGGAGGAATTGGT+GGG 0.489742 8.3:-6687986 MS.gene061112:CDS
TTTGGTGGAGGTGGCGTGGG+TGG 0.489746 8.3:-6688401 MS.gene061112:CDS
GGCGTGGGTGGTGGTGCCGG+CGG 0.491147 8.3:-6688389 MS.gene061112:CDS
GGCTTTGGAGGCGGTGCTGG+AGG 0.492028 8.3:-6688311 MS.gene061112:CDS
GGCAGTGGTGGAGGTGTTGG+AGG 0.492172 8.3:-6688353 MS.gene061112:CDS
CAACTTTGGTGGAGGTGGCG+TGG 0.494540 8.3:-6688405 MS.gene061112:CDS
GGCTATGGAGGTGGTAAAGG+TGG 0.498220 8.3:-6688275 MS.gene061112:CDS
GCGGGTGGTGGAGTAGGTGG+AGG 0.500353 8.3:-6687900 MS.gene061112:CDS
GGCATTGGAGGTGGTTCTGG+TGG 0.502373 8.3:-6688011 MS.gene061112:CDS
GGTGCTGGTGGAGGCTTTGG+AGG 0.502603 8.3:-6687789 MS.gene061112:CDS
GGAATTGGAGGTGGACATGG+TGG 0.505286 8.3:-6688185 MS.gene061112:CDS
GGTGGTATAGGTGGAGGAGG+AGG 0.509459 8.3:-6688140 MS.gene061112:CDS
GCTGGTGGAGGATTTGGCGG+TGG 0.511083 8.3:-6687822 MS.gene061112:CDS
TTTGGAGGAGGAATTGGAGG+TGG 0.514889 8.3:-6688248 MS.gene061112:CDS
GTTGACAACTTTGGTGGAGG+TGG 0.516532 8.3:-6688410 MS.gene061112:CDS
TCCACCACCCGCACCTCCAC+CGG 0.521516 8.3:+6687911 None:intergenic
AGCGGTGGTGGTATAGGTGG+AGG 0.522141 8.3:-6688146 MS.gene061112:CDS
GCAGGCGGAGGAATTGGTGG+GGG 0.523874 8.3:-6687984 MS.gene061112:CDS
CATGGTGGTGGACTAGGTGG+AGG 0.527570 8.3:-6688224 MS.gene061112:CDS
GGTGCCGGAGGTGGTGCTGG+TGG 0.529035 8.3:-6687801 MS.gene061112:CDS
GGAGGTGGTGCTGGAGCCGG+TGG 0.529177 8.3:-6687927 MS.gene061112:CDS
GGAACTGGTGGAGGTGCCGG+AGG 0.529772 8.3:-6688089 MS.gene061112:CDS
GGAGGTGGTGCTGGAACTGG+TGG 0.530440 8.3:-6688101 MS.gene061112:CDS
GGTGGTGGTATAGGTGGAGG+AGG 0.535569 8.3:-6688143 MS.gene061112:CDS
GGATTTGGCGGTGGTGCCGG+AGG 0.536059 8.3:-6687813 MS.gene061112:CDS
GCAGGTGGAGGCTATGGAGG+TGG 0.536135 8.3:-6688284 MS.gene061112:CDS
GGAGCCGGTGGAGGTGCGGG+TGG 0.537559 8.3:-6687915 MS.gene061112:CDS
GGTTCTGGTGGTGGTGCAGG+CGG 0.537894 8.3:-6687999 MS.gene061112:CDS
GGTGGAGGAGGAGGCTCTGG+TGG 0.542759 8.3:-6688131 MS.gene061112:CDS
TATGGAGGTGGTAAAGGTGG+TGG 0.543572 8.3:-6688272 MS.gene061112:CDS
GGTCATGGTGGTGGACTAGG+TGG 0.544222 8.3:-6688227 MS.gene061112:CDS
TTCGGAGGTGGTAATGGTGG+TGG 0.545087 8.3:-6688062 MS.gene061112:CDS
ACCACCTCCAATGCCTCCAC+CGG 0.546076 8.3:+6688019 None:intergenic
GCAGGTGGTGGAATTGGAGG+TGG 0.548360 8.3:-6688194 MS.gene061112:CDS
GGTGCTGGAGGTGGTGCAGG+TGG 0.552417 8.3:-6688299 MS.gene061112:CDS
GAATTTGTTGACAACTTTGG+TGG 0.555943 8.3:-6688416 MS.gene061112:CDS
GGAATTGGAGGTGGTCATGG+TGG 0.557632 8.3:-6688239 MS.gene061112:CDS
ACTTGCTGTGATATTTGCAT+TGG 0.561478 8.3:-6688477 MS.gene061112:CDS
GCCGCCACCAAAACCTCCGC+CGG 0.570676 8.3:+6688373 None:intergenic
GGTGCCGGAGGTGGCTTCGG+AGG 0.578863 8.3:-6688077 MS.gene061112:CDS
TTTGTTGACAACTTTGGTGG+AGG 0.589971 8.3:-6688413 MS.gene061112:CDS
TGATAGGAACATCTGAATGC+CGG 0.590146 8.3:-6688454 MS.gene061112:CDS
GGCTTCGGAGGTGGTAATGG+TGG 0.590392 8.3:-6688065 MS.gene061112:CDS
GTTGGAGGAGGACTTGGACA+CGG 0.664809 8.3:-6688338 MS.gene061112:CDS
GGAGGAGGACTTGGACACGG+TGG 0.721731 8.3:-6688335 MS.gene061112:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTCATCTTTTTGTATTTTC+CGG + chr8.3:6687820-6687839 None:intergenic 20.0%
!! GATGAATTTGTTGACAACTT+TGG - chr8.3:6687833-6687852 MS.gene061112:CDS 30.0%
! GTGATATTTGCATTGGTGAT+AGG - chr8.3:6687782-6687801 MS.gene061112:CDS 35.0%
!! ACTTGCTGTGATATTTGCAT+TGG - chr8.3:6687775-6687794 MS.gene061112:CDS 35.0%
!! GAATTTGTTGACAACTTTGG+TGG - chr8.3:6687836-6687855 MS.gene061112:CDS 35.0%
TGATAGGAACATCTGAATGC+CGG - chr8.3:6687798-6687817 MS.gene061112:CDS 40.0%
TTTGTTGACAACTTTGGTGG+AGG - chr8.3:6687839-6687858 MS.gene061112:CDS 40.0%
GTTGACAACTTTGGTGGAGG+TGG - chr8.3:6687842-6687861 MS.gene061112:CDS 50.0%
TATGGAGGTGGTAAAGGTGG+TGG - chr8.3:6687980-6687999 MS.gene061112:CDS 50.0%
TTTGGAGGAGGAATTGGAGG+TGG - chr8.3:6688004-6688023 MS.gene061112:CDS 50.0%
!! GGTGGTAAAGGTGGTGGTTT+TGG - chr8.3:6687986-6688005 MS.gene061112:CDS 50.0%
!!! AAAGGTGGTGGTTTTGGAGG+AGG - chr8.3:6687992-6688011 MS.gene061112:CDS 50.0%
!!! GGTAAAGGTGGTGGTTTTGG+AGG - chr8.3:6687989-6688008 MS.gene061112:CDS 50.0%
!!! GGTGGTTTTGGAGGAGGAAT+TGG - chr8.3:6687998-6688017 MS.gene061112:CDS 50.0%
!!! GGTTTTGGAGGAGGAATTGG+AGG - chr8.3:6688001-6688020 MS.gene061112:CDS 50.0%
AACTTTGGTGGAGGTGGCGT+GGG - chr8.3:6687848-6687867 MS.gene061112:CDS 55.0%
ATTGGAGGTGGACATGGTGG+TGG - chr8.3:6688070-6688089 MS.gene061112:CDS 55.0%
ATTGGAGGTGGTCATGGTGG+TGG - chr8.3:6688016-6688035 MS.gene061112:CDS 55.0%
GGAATTGGAGGTGGACATGG+TGG - chr8.3:6688067-6688086 MS.gene061112:CDS 55.0%
GGAATTGGAGGTGGTCATGG+TGG - chr8.3:6688013-6688032 MS.gene061112:CDS 55.0%
GGAGGAATTGGAGGTGGTCA+TGG - chr8.3:6688010-6688029 MS.gene061112:CDS 55.0%
GGAGGCTATGGAGGTGGTAA+AGG - chr8.3:6687974-6687993 MS.gene061112:CDS 55.0%
GGCTATGGAGGTGGTAAAGG+TGG - chr8.3:6687977-6687996 MS.gene061112:CDS 55.0%
GGTGGAATTGGAGGTGGACA+TGG - chr8.3:6688064-6688083 MS.gene061112:CDS 55.0%
GTTGGAGGAGGACTTGGACA+CGG - chr8.3:6687914-6687933 MS.gene061112:CDS 55.0%
! AGGTTCTGGTGGAGGCTTTG+GGG - chr8.3:6688372-6688391 MS.gene061112:CDS 55.0%
! ATTGGAGGTGGTGCTGGAAC+TGG - chr8.3:6688148-6688167 MS.gene061112:CDS 55.0%
! GAGGTTCTGGTGGAGGCTTT+GGG - chr8.3:6688371-6688390 MS.gene061112:CDS 55.0%
!! AATGGTGGTGGTGTAGGTGG+AGG - chr8.3:6688202-6688221 MS.gene061112:CDS 55.0%
!! ATTGGAGGTGGTTCTGGTGG+TGG - chr8.3:6688244-6688263 MS.gene061112:CDS 55.0%
!! GGTAATGGTGGTGGTGTAGG+TGG - chr8.3:6688199-6688218 MS.gene061112:CDS 55.0%
!! GGTGGACATGGTGGTGGAAT+CGG - chr8.3:6688076-6688095 MS.gene061112:CDS 55.0%
!! GGTGGTAATGGTGGTGGTGT+AGG - chr8.3:6688196-6688215 MS.gene061112:CDS 55.0%
!! GTGGACATGGTGGTGGAATC+GGG - chr8.3:6688077-6688096 MS.gene061112:CDS 55.0%
!! TGGACATGGTGGTGGAATCG+GGG - chr8.3:6688078-6688097 MS.gene061112:CDS 55.0%
!! TTCGGAGGTGGTAATGGTGG+TGG - chr8.3:6688190-6688209 MS.gene061112:CDS 55.0%
ACCACCTCCAATGCCTCCAC+CGG + chr8.3:6688140-6688159 None:intergenic 60.0%
ATAGGTGGAGGAGGAGGCTC+TGG - chr8.3:6688118-6688137 MS.gene061112:CDS 60.0%
CAACTTTGGTGGAGGTGGCG+TGG - chr8.3:6687847-6687866 MS.gene061112:CDS 60.0%
GGTGGAGTAGGTGGAGGTTC+TGG - chr8.3:6688358-6688377 MS.gene061112:CDS 60.0%
GGTGGCTTCGGAGGTGGTAA+TGG - chr8.3:6688184-6688203 MS.gene061112:CDS 60.0%
GGTGGTATAGGTGGAGGAGG+AGG - chr8.3:6688112-6688131 MS.gene061112:CDS 60.0%
GTGCAGGCGGAGGAATTGGT+GGG - chr8.3:6688266-6688285 MS.gene061112:CDS 60.0%
TGCAGGCGGAGGAATTGGTG+GGG - chr8.3:6688267-6688286 MS.gene061112:CDS 60.0%
! AGCGGTGGTGGTATAGGTGG+AGG - chr8.3:6688106-6688125 MS.gene061112:CDS 60.0%
! CTTGGACACGGTGGTGGCTT+TGG - chr8.3:6687926-6687945 MS.gene061112:CDS 60.0%
! GGAAGCGGTGGTGGTATAGG+TGG - chr8.3:6688103-6688122 MS.gene061112:CDS 60.0%
! GGAGGTTCTGGTGGAGGCTT+TGG - chr8.3:6688370-6688389 MS.gene061112:CDS 60.0%
! GGAGTAGGTGGAGGTTCTGG+TGG - chr8.3:6688361-6688380 MS.gene061112:CDS 60.0%
! GGTGGAAGCGGTGGTGGTAT+AGG - chr8.3:6688100-6688119 MS.gene061112:CDS 60.0%
! GGTGGTGGTATAGGTGGAGG+AGG - chr8.3:6688109-6688128 MS.gene061112:CDS 60.0%
! GGTTCTGGTGGAGGCTTTGG+GGG - chr8.3:6688373-6688392 MS.gene061112:CDS 60.0%
! GTAGGTGGAGGTTCTGGTGG+AGG - chr8.3:6688364-6688383 MS.gene061112:CDS 60.0%
! TTTGGAGGTGGTGCTGGAGC+CGG - chr8.3:6688322-6688341 MS.gene061112:CDS 60.0%
!! AGTGGTGGAGGTGTTGGAGG+AGG - chr8.3:6687902-6687921 MS.gene061112:CDS 60.0%
!! CATGGTGGTGGACTAGGTGG+AGG - chr8.3:6688028-6688047 MS.gene061112:CDS 60.0%
!! GCAGGTGGTGGAATTGGAGG+TGG - chr8.3:6688058-6688077 MS.gene061112:CDS 60.0%
!! GGACATGGTGGTGGAATCGG+GGG - chr8.3:6688079-6688098 MS.gene061112:CDS 60.0%
!! GGAGGCATTGGAGGTGGTTC+TGG - chr8.3:6688238-6688257 MS.gene061112:CDS 60.0%
!! GGAGGTGTTGGAGGAGGACT+TGG - chr8.3:6687908-6687927 MS.gene061112:CDS 60.0%
!! GGCATTGGAGGTGGTTCTGG+TGG - chr8.3:6688241-6688260 MS.gene061112:CDS 60.0%
!! GGCTTCGGAGGTGGTAATGG+TGG - chr8.3:6688187-6688206 MS.gene061112:CDS 60.0%
!! GGTCATGGTGGTGGACTAGG+TGG - chr8.3:6688025-6688044 MS.gene061112:CDS 60.0%
!! GGTGCAGGTGGTGGAATTGG+AGG - chr8.3:6688055-6688074 MS.gene061112:CDS 60.0%
!! GGTGGTCATGGTGGTGGACT+AGG - chr8.3:6688022-6688041 MS.gene061112:CDS 60.0%
!! GGTGGTGCAGGTGGTGGAAT+TGG - chr8.3:6688052-6688071 MS.gene061112:CDS 60.0%
!! TCTGGTGGAGGCATTGGAGG+TGG - chr8.3:6688136-6688155 MS.gene061112:CDS 60.0%
!!! GCAGGTGGTGGTTTTGGAGG+CGG - chr8.3:6688490-6688509 MS.gene061112:CDS 60.0%
ACCACCTCCGAAGCCACCTC+CGG + chr8.3:6688182-6688201 None:intergenic 65.0%
CGGAGGAATTGGTGGGGGTG+GGG - chr8.3:6688273-6688292 MS.gene061112:CDS 65.0%
GCAGGCGGAGGAATTGGTGG+GGG - chr8.3:6688268-6688287 MS.gene061112:CDS 65.0%
GCAGGTGGAGGCTATGGAGG+TGG - chr8.3:6687968-6687987 MS.gene061112:CDS 65.0%
GCGGAGGAATTGGTGGGGGT+GGG - chr8.3:6688272-6688291 MS.gene061112:CDS 65.0%
GCTGGTGGAGGATTTGGCGG+TGG - chr8.3:6688430-6688449 MS.gene061112:CDS 65.0%
GGAGGAATTGGTGGGGGTGG+GGG - chr8.3:6688274-6688293 MS.gene061112:CDS 65.0%
GGAGGACTTGGACACGGTGG+TGG - chr8.3:6687920-6687939 MS.gene061112:CDS 65.0%
GGAGGAGGACTTGGACACGG+TGG - chr8.3:6687917-6687936 MS.gene061112:CDS 65.0%
GGAGGATTTGGCGGTGGTGC+CGG - chr8.3:6688436-6688455 MS.gene061112:CDS 65.0%
GGTGCAGGCGGAGGAATTGG+TGG - chr8.3:6688265-6688284 MS.gene061112:CDS 65.0%
GGTGCAGGTGGAGGCTATGG+AGG - chr8.3:6687965-6687984 MS.gene061112:CDS 65.0%
GGTGGAATCGGGGGTGGAAG+CGG - chr8.3:6688088-6688107 MS.gene061112:CDS 65.0%
GGTGGTGCAGGCGGAGGAAT+TGG - chr8.3:6688262-6688281 MS.gene061112:CDS 65.0%
GGTGGTGCAGGTGGAGGCTA+TGG - chr8.3:6687962-6687981 MS.gene061112:CDS 65.0%
GGTGGTGTAGGTGGAGGAGG+AGG - chr8.3:6688208-6688227 MS.gene061112:CDS 65.0%
GTAGGTGGAGGAGGAGGAGC+CGG - chr8.3:6688214-6688233 MS.gene061112:CDS 65.0%
TTTGGTGGAGGTGGCGTGGG+TGG - chr8.3:6687851-6687870 MS.gene061112:CDS 65.0%
! CTAGGTGGAGGTGGTGGTGC+AGG - chr8.3:6688040-6688059 MS.gene061112:CDS 65.0%
! GCTGGAACTGGTGGAGGTGC+CGG - chr8.3:6688160-6688179 MS.gene061112:CDS 65.0%
! GGAGGCTCTGGTGGAGGCAT+TGG - chr8.3:6688130-6688149 MS.gene061112:CDS 65.0%
! GGAGGGGCTGGTGGAGGATT+TGG - chr8.3:6688424-6688443 MS.gene061112:CDS 65.0%
! GGAGGTGGTGCTGGAACTGG+TGG - chr8.3:6688151-6688170 MS.gene061112:CDS 65.0%
! GGGGCTGGTGGAGGATTTGG+CGG - chr8.3:6688427-6688446 MS.gene061112:CDS 65.0%
! GGTGGTGCTGGAACTGGTGG+AGG - chr8.3:6688154-6688173 MS.gene061112:CDS 65.0%
! GGTGGTGGTGTAGGTGGAGG+AGG - chr8.3:6688205-6688224 MS.gene061112:CDS 65.0%
! GTGGTGGAGGTGCAGGTGGA+GGG - chr8.3:6688407-6688426 MS.gene061112:CDS 65.0%
! TGGTGGAGGTGCAGGTGGAG+GGG - chr8.3:6688408-6688427 MS.gene061112:CDS 65.0%
! TTTGGAGGCGGTGCTGGAGG+TGG - chr8.3:6687944-6687963 MS.gene061112:CDS 65.0%
! TTTGGGGGTGGTGCTGGAGG+TGG - chr8.3:6688388-6688407 MS.gene061112:CDS 65.0%
!! CACGGTGGTGGCTTTGGAGG+CGG - chr8.3:6687932-6687951 MS.gene061112:CDS 65.0%
!! CATGGTGGTGGAATCGGGGG+TGG - chr8.3:6688082-6688101 MS.gene061112:CDS 65.0%
!! GCTGGTGGAGGCTTTGGAGG+CGG - chr8.3:6688310-6688329 MS.gene061112:CDS 65.0%
!! GCTGGTGGAGGCTTTGGAGG+TGG - chr8.3:6688310-6688329 MS.gene061112:CDS 65.0%
!! GGACACGGTGGTGGCTTTGG+AGG - chr8.3:6687929-6687948 MS.gene061112:CDS 65.0%
!! GGAGGCATTGGAGGTGGTGC+TGG - chr8.3:6688142-6688161 MS.gene061112:CDS 65.0%
!! GGAGGCTTTGGAGGTGGTGC+TGG - chr8.3:6688316-6688335 MS.gene061112:CDS 65.0%
!! GGAGGTGCTGGTGGAGGCTT+TGG - chr8.3:6688304-6688323 MS.gene061112:CDS 65.0%
!! GGCAGTGGTGGAGGTGTTGG+AGG - chr8.3:6687899-6687918 MS.gene061112:CDS 65.0%
!! GGCTCTGGTGGAGGCATTGG+AGG - chr8.3:6688133-6688152 MS.gene061112:CDS 65.0%
!! GGTGCTGGTGGAGGCTTTGG+AGG - chr8.3:6688307-6688326 MS.gene061112:CDS 65.0%
!! GGTGGACTAGGTGGAGGTGG+TGG - chr8.3:6688034-6688053 MS.gene061112:CDS 65.0%
!! GGTGGTGCTGGTGGAGGCTT+TGG - chr8.3:6688460-6688479 MS.gene061112:CDS 65.0%
!! GGTGGTGGACTAGGTGGAGG+TGG - chr8.3:6688031-6688050 MS.gene061112:CDS 65.0%
!! GGTGGTTCTGGTGGTGGTGC+AGG - chr8.3:6688250-6688269 MS.gene061112:CDS 65.0%
!! GGTTCTGGTGGTGGTGCAGG+CGG - chr8.3:6688253-6688272 MS.gene061112:CDS 65.0%
!! TCTGGTGGAGGCTTTGGGGG+TGG - chr8.3:6688376-6688395 MS.gene061112:CDS 65.0%
!! TTTGGTGGCGGCAGTGGTGG+AGG - chr8.3:6687890-6687909 MS.gene061112:CDS 65.0%
!!! GGAGGTTTTGGTGGCGGCAG+TGG - chr8.3:6687884-6687903 MS.gene061112:CDS 65.0%
!!! GGCGCAGGTGGTGGTTTTGG+AGG - chr8.3:6688487-6688506 MS.gene061112:CDS 65.0%
!!! GGTGGTTTTGGAGGCGGTGC+TGG - chr8.3:6688496-6688515 MS.gene061112:CDS 65.0%
!!! GGTTTTGGAGGCGGTGCTGG+CGG - chr8.3:6688499-6688518 MS.gene061112:CDS 65.0%
!!! GGTTTTGGTGGCGGCAGTGG+TGG - chr8.3:6687887-6687906 MS.gene061112:CDS 65.0%
ATCGGGGGTGGAAGCGGTGG+TGG - chr8.3:6688094-6688113 MS.gene061112:CDS 70.0%
GCCGCCACCAAAACCTCCGC+CGG + chr8.3:6687882-6687901 None:intergenic 70.0%
GCCTCCACCAGCACCACCTC+CGG + chr8.3:6688458-6688477 None:intergenic 70.0%
GCTGGAGGTGGTGCAGGTGG+AGG - chr8.3:6687956-6687975 MS.gene061112:CDS 70.0%
GGAATCGGGGGTGGAAGCGG+TGG - chr8.3:6688091-6688110 MS.gene061112:CDS 70.0%
GGCGGAGGAATTGGTGGGGG+TGG - chr8.3:6688271-6688290 MS.gene061112:CDS 70.0%
TCCACCACCCGCACCTCCAC+CGG + chr8.3:6688344-6688363 None:intergenic 70.0%
TGCTGGAGCCGGTGGAGGTG+CGG - chr8.3:6688333-6688352 MS.gene061112:CDS 70.0%
TTTGGAGGCGGCGCAGGTGG+TGG - chr8.3:6688478-6688497 MS.gene061112:CDS 70.0%
! ATTGGTGGGGGTGGGGGTGC+AGG - chr8.3:6688280-6688299 MS.gene061112:CDS 70.0%
! GGAGGAGCCGGTGGAGGCAT+TGG - chr8.3:6688226-6688245 MS.gene061112:CDS 70.0%
! GGAGGAGGAGGCTCTGGTGG+AGG - chr8.3:6688124-6688143 MS.gene061112:CDS 70.0%
! GGAGGTGGTGGTGCAGGTGG+TGG - chr8.3:6688046-6688065 MS.gene061112:CDS 70.0%
! GGATTTGGCGGTGGTGCCGG+AGG - chr8.3:6688439-6688458 MS.gene061112:CDS 70.0%
! GGCGGCAGTGGTGGAGGTGT+TGG - chr8.3:6687896-6687915 MS.gene061112:CDS 70.0%
! GGTGCTGGAGGTGGTGCAGG+TGG - chr8.3:6687953-6687972 MS.gene061112:CDS 70.0%
! GGTGGAGGAGGAGGCTCTGG+TGG - chr8.3:6688121-6688140 MS.gene061112:CDS 70.0%
! GGTGGAGGTGGTGGTGCAGG+TGG - chr8.3:6688043-6688062 MS.gene061112:CDS 70.0%
! GGTGGTGCTGGAGGTGGTGG+AGG - chr8.3:6688394-6688413 MS.gene061112:CDS 70.0%
! TTTGGCGGTGGTGCCGGAGG+TGG - chr8.3:6688442-6688461 MS.gene061112:CDS 70.0%
!! ACTGGTGGAGGTGCCGGAGG+TGG - chr8.3:6688166-6688185 MS.gene061112:CDS 70.0%
!! GAGGCGGTGCTGGCGGTGAT+AGG - chr8.3:6688506-6688525 MS.gene061112:CDS 70.0%
!! GCAGGTGGAGGTGCTGGTGG+AGG - chr8.3:6688298-6688317 MS.gene061112:CDS 70.0%
!! GCCGGCGGAGGTTTTGGTGG+CGG - chr8.3:6687878-6687897 MS.gene061112:CDS 70.0%
!! GCCGGTGGAGGCATTGGAGG+TGG - chr8.3:6688232-6688251 MS.gene061112:CDS 70.0%
!! GCGGGTGGTGGAGTAGGTGG+AGG - chr8.3:6688352-6688371 MS.gene061112:CDS 70.0%
!! GCTGGAGGTGGTGGAGGTGC+AGG - chr8.3:6688400-6688419 MS.gene061112:CDS 70.0%
!! GGAACTGGTGGAGGTGCCGG+AGG - chr8.3:6688163-6688182 MS.gene061112:CDS 70.0%
!! GGAGCCGGTGGAGGCATTGG+AGG - chr8.3:6688229-6688248 MS.gene061112:CDS 70.0%
!! GGAGGCTTTGGGGGTGGTGC+TGG - chr8.3:6688382-6688401 MS.gene061112:CDS 70.0%
!! GGAGGTGCCGGAGGTGGCTT+CGG - chr8.3:6688172-6688191 MS.gene061112:CDS 70.0%
!! GGAGGTGCGGGTGGTGGAGT+AGG - chr8.3:6688346-6688365 MS.gene061112:CDS 70.0%
!! GGAGGTGGTGGAGGTGCAGG+TGG - chr8.3:6688403-6688422 MS.gene061112:CDS 70.0%
!! GGCGGCGCAGGTGGTGGTTT+TGG - chr8.3:6688484-6688503 MS.gene061112:CDS 70.0%
!! GGCTTTGGAGGCGGTGCTGG+AGG - chr8.3:6687941-6687960 MS.gene061112:CDS 70.0%
!! GGCTTTGGGGGTGGTGCTGG+AGG - chr8.3:6688385-6688404 MS.gene061112:CDS 70.0%
!! GGTGCAGGTGGAGGTGCTGG+TGG - chr8.3:6688295-6688314 MS.gene061112:CDS 70.0%
!! GGTGCGGGTGGTGGAGTAGG+TGG - chr8.3:6688349-6688368 MS.gene061112:CDS 70.0%
!! GGTGGCTTTGGAGGCGGTGC+TGG - chr8.3:6687938-6687957 MS.gene061112:CDS 70.0%
!! GGTGGTGGAGGTGCAGGTGG+AGG - chr8.3:6688406-6688425 MS.gene061112:CDS 70.0%
!! TCTGGTGGTGGTGCAGGCGG+AGG - chr8.3:6688256-6688275 MS.gene061112:CDS 70.0%
!!! GGTGCCGGCGGAGGTTTTGG+TGG - chr8.3:6687875-6687894 MS.gene061112:CDS 70.0%
!!! GGTGGTGCCGGCGGAGGTTT+TGG - chr8.3:6687872-6687891 MS.gene061112:CDS 70.0%
GCCGGAGGTGGCTTCGGAGG+TGG - chr8.3:6688178-6688197 MS.gene061112:CDS 75.0%
GGAGGAGGAGGAGCCGGTGG+AGG - chr8.3:6688220-6688239 MS.gene061112:CDS 75.0%
GGTGCAGGTGGAGGGGCTGG+TGG - chr8.3:6688415-6688434 MS.gene061112:CDS 75.0%
GGTGGAGGAGGAGGAGCCGG+TGG - chr8.3:6688217-6688236 MS.gene061112:CDS 75.0%
GGTGGAGGTGGCGTGGGTGG+TGG - chr8.3:6687854-6687873 MS.gene061112:CDS 75.0%
! GCAGGTGGAGGGGCTGGTGG+AGG - chr8.3:6688418-6688437 MS.gene061112:CDS 75.0%
! GCTGGAGCCGGTGGAGGTGC+GGG - chr8.3:6688334-6688353 MS.gene061112:CDS 75.0%
! GGAGGTGCAGGTGGAGGGGC+TGG - chr8.3:6688412-6688431 MS.gene061112:CDS 75.0%
! GGAGGTGGTGCTGGAGCCGG+TGG - chr8.3:6688325-6688344 MS.gene061112:CDS 75.0%
! GGCGGTGCTGGAGGTGGTGC+AGG - chr8.3:6687950-6687969 MS.gene061112:CDS 75.0%
! GGGGGTGCAGGTGGAGGTGC+TGG - chr8.3:6688292-6688311 MS.gene061112:CDS 75.0%
! GGGGGTGGTGCTGGAGGTGG+TGG - chr8.3:6688391-6688410 MS.gene061112:CDS 75.0%
! GGTGCCGGAGGTGGCTTCGG+AGG - chr8.3:6688175-6688194 MS.gene061112:CDS 75.0%
! GGTGCCGGAGGTGGTGCTGG+TGG - chr8.3:6688451-6688470 MS.gene061112:CDS 75.0%
! GGTGGCGTGGGTGGTGGTGC+CGG - chr8.3:6687860-6687879 MS.gene061112:CDS 75.0%
! GGTGGTGCCGGAGGTGGTGC+TGG - chr8.3:6688448-6688467 MS.gene061112:CDS 75.0%
! GGTGGTGCTGGAGCCGGTGG+AGG - chr8.3:6688328-6688347 MS.gene061112:CDS 75.0%
!! GCCGGAGGTGGTGCTGGTGG+AGG - chr8.3:6688454-6688473 MS.gene061112:CDS 75.0%
!! GGAGGCTTTGGAGGCGGCGC+AGG - chr8.3:6688472-6688491 MS.gene061112:CDS 75.0%
!! GGCTTTGGAGGCGGCGCAGG+TGG - chr8.3:6688475-6688494 MS.gene061112:CDS 75.0%
!! GCCGGTGGAGGTGCGGGTGG+TGG - chr8.3:6688340-6688359 MS.gene061112:CDS 80.0%
!! GGAGCCGGTGGAGGTGCGGG+TGG - chr8.3:6688337-6688356 MS.gene061112:CDS 80.0%
!! GGCGTGGGTGGTGGTGCCGG+CGG - chr8.3:6687863-6687882 MS.gene061112:CDS 80.0%
!! GGGGGTGGGGGTGCAGGTGG+AGG - chr8.3:6688286-6688305 MS.gene061112:CDS 80.0%
!! GGTGGGGGTGGGGGTGCAGG+TGG - chr8.3:6688283-6688302 MS.gene061112:CDS 80.0%
!!! GTGGGTGGTGGTGCCGGCGG+AGG - chr8.3:6687866-6687885 MS.gene061112:CDS 80.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 6687746 6688528 6687746 ID=MS.gene061112
chr8.3 mRNA 6687746 6688528 6687746 ID=MS.gene061112.t1;Parent=MS.gene061112
chr8.3 exon 6687746 6688528 6687746 ID=MS.gene061112.t1.exon1;Parent=MS.gene061112.t1
chr8.3 CDS 6687746 6688528 6687746 ID=cds.MS.gene061112.t1;Parent=MS.gene061112.t1
Gene Sequence

>MS.gene061112

ATGGGAAATTTACACAAGTATGTTGTAGTACTTGCTGTGATATTTGCATTGGTGATAGGAACATCTGAATGCCGGAAAATACAAAAAGATGAATTTGTTGACAACTTTGGTGGAGGTGGCGTGGGTGGTGGTGCCGGCGGAGGTTTTGGTGGCGGCAGTGGTGGAGGTGTTGGAGGAGGACTTGGACACGGTGGTGGCTTTGGAGGCGGTGCTGGAGGTGGTGCAGGTGGAGGCTATGGAGGTGGTAAAGGTGGTGGTTTTGGAGGAGGAATTGGAGGTGGTCATGGTGGTGGACTAGGTGGAGGTGGTGGTGCAGGTGGTGGAATTGGAGGTGGACATGGTGGTGGAATCGGGGGTGGAAGCGGTGGTGGTATAGGTGGAGGAGGAGGCTCTGGTGGAGGCATTGGAGGTGGTGCTGGAACTGGTGGAGGTGCCGGAGGTGGCTTCGGAGGTGGTAATGGTGGTGGTGTAGGTGGAGGAGGAGGAGCCGGTGGAGGCATTGGAGGTGGTTCTGGTGGTGGTGCAGGCGGAGGAATTGGTGGGGGTGGGGGTGCAGGTGGAGGTGCTGGTGGAGGCTTTGGAGGTGGTGCTGGAGCCGGTGGAGGTGCGGGTGGTGGAGTAGGTGGAGGTTCTGGTGGAGGCTTTGGGGGTGGTGCTGGAGGTGGTGGAGGTGCAGGTGGAGGGGCTGGTGGAGGATTTGGCGGTGGTGCCGGAGGTGGTGCTGGTGGAGGCTTTGGAGGCGGCGCAGGTGGTGGTTTTGGAGGCGGTGCTGGCGGTGATAGG

Protein sequence

>MS.gene061112.t1

MGNLHKYVVVLAVIFALVIGTSECRKIQKDEFVDNFGGGGVGGGAGGGFGGGSGGGVGGGLGHGGGFGGGAGGGAGGGYGGGKGGGFGGGIGGGHGGGLGGGGGAGGGIGGGHGGGIGGGSGGGIGGGGGSGGGIGGGAGTGGGAGGGFGGGNGGGVGGGGGAGGGIGGGSGGGAGGGIGGGGGAGGGAGGGFGGGAGAGGGAGGGVGGGSGGGFGGGAGGGGGAGGGAGGGFGGGAGGGAGGGFGGGAGGGFGGGAGGDR