Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56982.t1 | XP_003611828.1 | 92 | 263 | 21 | 0 | 1 | 263 | 1 | 263 | 1.20E-137 | 499.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56982.t1 | O80477 | 45.5 | 264 | 133 | 6 | 4 | 262 | 5 | 262 | 8.4e-60 | 231.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56982.t1 | G7K9E3 | 92.0 | 263 | 21 | 0 | 1 | 263 | 1 | 263 | 8.4e-138 | 499.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87350 | MS.gene56982 | PPI |
| MS.gene56982 | MS.gene010412 | PPI |
| MS.gene56982 | MS.gene041151 | PPI |
| MS.gene28543 | MS.gene56982 | PPI |
| MS.gene56982 | MS.gene011884 | PPI |
| MS.gene56982 | MS.gene047689 | PPI |
| MS.gene56982 | MS.gene44962 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56982.t1 | MTR_5g018300 | 92.015 | 263 | 21 | 0 | 1 | 263 | 1 | 263 | 0.0 | 514 |
| MS.gene56982.t1 | MTR_5g018280 | 87.452 | 263 | 32 | 1 | 1 | 263 | 1 | 262 | 3.10e-173 | 478 |
| MS.gene56982.t1 | MTR_5g018320 | 87.109 | 256 | 33 | 0 | 8 | 263 | 5 | 260 | 9.22e-173 | 477 |
| MS.gene56982.t1 | MTR_8g007675 | 55.469 | 256 | 112 | 2 | 8 | 262 | 32 | 286 | 1.21e-98 | 290 |
| MS.gene56982.t1 | MTR_8g008500 | 54.231 | 260 | 114 | 4 | 7 | 262 | 26 | 284 | 4.37e-94 | 278 |
| MS.gene56982.t1 | MTR_8g008660 | 50.584 | 257 | 122 | 3 | 7 | 262 | 26 | 278 | 1.04e-89 | 267 |
| MS.gene56982.t1 | MTR_8g008505 | 50.584 | 257 | 124 | 3 | 7 | 262 | 27 | 281 | 2.89e-89 | 266 |
| MS.gene56982.t1 | MTR_3g464040 | 49.805 | 257 | 124 | 3 | 7 | 262 | 18 | 270 | 1.25e-87 | 261 |
| MS.gene56982.t1 | MTR_8g007670 | 46.718 | 259 | 135 | 3 | 6 | 262 | 5 | 262 | 2.68e-80 | 243 |
| MS.gene56982.t1 | MTR_8g079120 | 42.697 | 267 | 141 | 4 | 1 | 262 | 1 | 260 | 8.16e-75 | 229 |
| MS.gene56982.t1 | MTR_8g007670 | 40.927 | 259 | 106 | 3 | 6 | 262 | 5 | 218 | 2.49e-64 | 200 |
| MS.gene56982.t1 | MTR_5g018350 | 39.231 | 260 | 147 | 4 | 6 | 262 | 5 | 256 | 4.68e-61 | 193 |
| MS.gene56982.t1 | MTR_5g018365 | 39.382 | 259 | 148 | 3 | 6 | 262 | 10 | 261 | 1.19e-59 | 190 |
| MS.gene56982.t1 | MTR_7g015220 | 37.549 | 253 | 154 | 2 | 7 | 259 | 123 | 371 | 1.49e-52 | 175 |
| MS.gene56982.t1 | MTR_8g079120 | 43.931 | 173 | 87 | 3 | 1 | 168 | 43 | 210 | 6.29e-49 | 161 |
| MS.gene56982.t1 | MTR_3g005410 | 35.409 | 257 | 155 | 4 | 7 | 259 | 93 | 342 | 6.28e-47 | 159 |
| MS.gene56982.t1 | MTR_5g068100 | 35.249 | 261 | 163 | 2 | 3 | 262 | 25 | 280 | 1.09e-45 | 155 |
| MS.gene56982.t1 | MTR_3g093730 | 35.433 | 254 | 159 | 2 | 6 | 259 | 34 | 282 | 6.76e-43 | 147 |
| MS.gene56982.t1 | MTR_3g093730 | 31.102 | 254 | 125 | 4 | 6 | 259 | 34 | 237 | 4.46e-33 | 121 |
| MS.gene56982.t1 | MTR_5g008130 | 40.506 | 79 | 46 | 1 | 185 | 262 | 2 | 80 | 6.49e-14 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56982.t1 | AT2G23610 | 45.076 | 264 | 134 | 5 | 4 | 262 | 5 | 262 | 6.92e-78 | 236 |
| MS.gene56982.t1 | AT2G23620 | 43.798 | 258 | 142 | 2 | 6 | 262 | 7 | 262 | 6.94e-75 | 229 |
| MS.gene56982.t1 | AT2G23560 | 44.944 | 267 | 134 | 6 | 1 | 262 | 1 | 259 | 6.20e-74 | 226 |
| MS.gene56982.t1 | AT3G50440 | 42.578 | 256 | 142 | 3 | 9 | 262 | 22 | 274 | 8.91e-72 | 221 |
| MS.gene56982.t1 | AT2G23600 | 41.985 | 262 | 141 | 5 | 6 | 262 | 7 | 262 | 3.65e-70 | 217 |
| MS.gene56982.t1 | AT2G23600 | 41.985 | 262 | 141 | 5 | 6 | 262 | 22 | 277 | 5.86e-70 | 217 |
| MS.gene56982.t1 | AT4G37150 | 42.424 | 264 | 134 | 6 | 7 | 262 | 2 | 255 | 4.80e-69 | 214 |
| MS.gene56982.t1 | AT2G23580 | 43.446 | 267 | 141 | 5 | 1 | 262 | 1 | 262 | 1.57e-68 | 213 |
| MS.gene56982.t1 | AT2G23550 | 43.446 | 267 | 141 | 5 | 1 | 262 | 1 | 262 | 2.02e-66 | 207 |
| MS.gene56982.t1 | AT2G23550 | 43.446 | 267 | 141 | 5 | 1 | 262 | 8 | 269 | 2.17e-66 | 207 |
| MS.gene56982.t1 | AT2G23590 | 39.147 | 258 | 147 | 2 | 5 | 262 | 24 | 271 | 7.69e-65 | 204 |
| MS.gene56982.t1 | AT2G23610 | 40.385 | 260 | 107 | 5 | 4 | 262 | 5 | 217 | 2.35e-62 | 195 |
| MS.gene56982.t1 | AT5G10300 | 38.113 | 265 | 149 | 5 | 4 | 262 | 2 | 257 | 1.13e-57 | 185 |
| MS.gene56982.t1 | AT2G23550 | 38.346 | 266 | 127 | 5 | 1 | 262 | 1 | 233 | 1.70e-50 | 166 |
| MS.gene56982.t1 | AT1G26360 | 35.798 | 257 | 160 | 2 | 3 | 259 | 185 | 436 | 2.52e-50 | 171 |
| MS.gene56982.t1 | AT3G29770 | 37.154 | 253 | 155 | 2 | 7 | 259 | 137 | 385 | 4.01e-50 | 169 |
| MS.gene56982.t1 | AT5G58310 | 34.221 | 263 | 161 | 4 | 6 | 261 | 3 | 260 | 1.05e-48 | 162 |
| MS.gene56982.t1 | AT1G69240 | 34.866 | 261 | 157 | 5 | 4 | 259 | 184 | 436 | 7.67e-46 | 159 |
| MS.gene56982.t1 | AT2G23600 | 44.643 | 168 | 84 | 4 | 6 | 168 | 22 | 185 | 2.31e-45 | 151 |
| MS.gene56982.t1 | AT1G33990 | 32.812 | 256 | 167 | 3 | 5 | 259 | 94 | 345 | 2.84e-45 | 155 |
| MS.gene56982.t1 | AT2G23580 | 46.199 | 171 | 84 | 4 | 1 | 166 | 1 | 168 | 5.24e-45 | 150 |
| MS.gene56982.t1 | AT4G09900 | 31.102 | 254 | 170 | 3 | 7 | 259 | 97 | 346 | 1.73e-44 | 153 |
| MS.gene56982.t1 | AT4G16690 | 34.766 | 256 | 145 | 4 | 8 | 255 | 12 | 253 | 9.67e-44 | 149 |
| MS.gene56982.t1 | AT2G23550 | 47.368 | 171 | 82 | 4 | 1 | 166 | 8 | 175 | 1.50e-42 | 144 |
| MS.gene56982.t1 | AT3G10870 | 34.783 | 253 | 162 | 3 | 8 | 259 | 20 | 270 | 6.15e-42 | 145 |
| MS.gene56982.t1 | AT5G10300 | 38.571 | 210 | 103 | 5 | 4 | 207 | 2 | 191 | 5.90e-41 | 140 |
| MS.gene56982.t1 | AT4G37140 | 51.429 | 105 | 51 | 0 | 7 | 111 | 2 | 106 | 1.01e-39 | 135 |
| MS.gene56982.t1 | AT2G23570 | 40.659 | 182 | 101 | 4 | 84 | 262 | 1 | 178 | 8.24e-34 | 121 |
| MS.gene56982.t1 | AT4G37140 | 49.451 | 91 | 46 | 0 | 7 | 97 | 2 | 92 | 7.01e-32 | 113 |
| MS.gene56982.t1 | AT3G29770 | 41.667 | 72 | 42 | 0 | 8 | 79 | 138 | 209 | 6.34e-16 | 75.9 |
Find 62 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAATGGTTCCATGTTATT+TGG | 0.107480 | 5.1:+10599747 | MS.gene56982:CDS |
| AACCGTTGATTGAATTTCTA+AGG | 0.235120 | 5.1:+10597023 | MS.gene56982:CDS |
| GAACCATTTGGTTTATCATT+TGG | 0.243454 | 5.1:-10599735 | None:intergenic |
| GCTCTAACACTTTGTCTTGT+TGG | 0.268832 | 5.1:-10600074 | None:intergenic |
| AACCATTTGGTTTATCATTT+GGG | 0.271934 | 5.1:-10599734 | None:intergenic |
| ACCCTAGACATGGCTGCTTC+TGG | 0.309439 | 5.1:+10596950 | MS.gene56982:CDS |
| AGACATTTCGTGTTGATTCA+TGG | 0.318093 | 5.1:+10596857 | MS.gene56982:CDS |
| CCAAATAACATGGAACCATT+TGG | 0.347623 | 5.1:-10599747 | None:intergenic |
| TCCAGCTCATGCACTTGCTT+TGG | 0.361365 | 5.1:-10596980 | None:intergenic |
| ATTGCAGAATACACAAAGAT+TGG | 0.373212 | 5.1:+10599674 | MS.gene56982:intron |
| CAGCTTGGACACAAAGATTA+CGG | 0.386498 | 5.1:+10599701 | MS.gene56982:CDS |
| GCTCATGCACTTGCTTTGGA+TGG | 0.400690 | 5.1:-10596976 | None:intergenic |
| AGATATGCACAAAGCGCTTT+CGG | 0.402700 | 5.1:-10600186 | None:intergenic |
| GTTACTTTGTTAAAATCTGC+TGG | 0.420158 | 5.1:+10596914 | MS.gene56982:CDS |
| CCCTTGCATTGTCATTACTA+AGG | 0.446862 | 5.1:+10599956 | MS.gene56982:CDS |
| CTTGCCATGGGGCATGGTGT+TGG | 0.464715 | 5.1:+10596882 | MS.gene56982:CDS |
| ATCACTTTGACATCATTAGC+AGG | 0.471584 | 5.1:-10600129 | None:intergenic |
| AGACTCAAGAAGCTTACATC+AGG | 0.478617 | 5.1:-10597175 | None:intergenic |
| CGTAATCTTTGTGTCCAAGC+TGG | 0.484193 | 5.1:-10599700 | None:intergenic |
| CTAAGGCCTGCTAGGAGCTA+TGG | 0.487770 | 5.1:+10599973 | MS.gene56982:CDS |
| AGCCCAAATGATAAACCAAA+TGG | 0.499816 | 5.1:+10599732 | MS.gene56982:CDS |
| TGGGGCATGGTGTTGGTACA+AGG | 0.499948 | 5.1:+10596889 | MS.gene56982:CDS |
| TTGGCACACAATGAACACTT+TGG | 0.501510 | 5.1:-10600055 | None:intergenic |
| TTCCAGAAGCAGCCATGTCT+AGG | 0.502599 | 5.1:-10596952 | None:intergenic |
| TTGATTCATGGATCTTGCCA+TGG | 0.506866 | 5.1:+10596869 | MS.gene56982:CDS |
| ACCTTGGTTGCTAAGAATTG+TGG | 0.511072 | 5.1:-10599771 | None:intergenic |
| TGTCATTACTAAGGCCTGCT+AGG | 0.517957 | 5.1:+10599965 | MS.gene56982:CDS |
| GCCTTAGTAATGACAATGCA+AGG | 0.522441 | 5.1:-10599957 | None:intergenic |
| ATGGATCTTGCCATGGGGCA+TGG | 0.523884 | 5.1:+10596876 | MS.gene56982:CDS |
| TGATTCATGGATCTTGCCAT+GGG | 0.528952 | 5.1:+10596870 | MS.gene56982:CDS |
| ATCCTAGTGGGTCATAGCTT+AGG | 0.529106 | 5.1:+10597070 | MS.gene56982:CDS |
| TCCAAAGCAAGTGCATGAGC+TGG | 0.530609 | 5.1:+10596979 | MS.gene56982:CDS |
| ACAAAGATTGGATTCCAGCT+TGG | 0.539042 | 5.1:+10599686 | MS.gene56982:CDS |
| GACCTTAGAAATTCAATCAA+CGG | 0.539220 | 5.1:-10597025 | None:intergenic |
| TCATCACCATAGCTCCTAGC+AGG | 0.541402 | 5.1:-10599979 | None:intergenic |
| AGGATAACTCTCTGGTCTTG+TGG | 0.547320 | 5.1:-10597052 | None:intergenic |
| TTTGTTAGGAAATAATTCCA+TGG | 0.552369 | 5.1:-10597113 | None:intergenic |
| GTAATGACAATGCAAGGGAC+AGG | 0.570287 | 5.1:-10599951 | None:intergenic |
| CTAGTGGGTCATAGCTTAGG+TGG | 0.571744 | 5.1:+10597073 | MS.gene56982:CDS |
| GACCCACTAGGATAACTCTC+TGG | 0.572600 | 5.1:-10597060 | None:intergenic |
| GATGTGTATATCTGTGGCCA+TGG | 0.581135 | 5.1:+10597096 | MS.gene56982:CDS |
| TCCAGAAGCAGCCATGTCTA+GGG | 0.584704 | 5.1:-10596951 | None:intergenic |
| TGGAGATAGTTGATACACCT+TGG | 0.589354 | 5.1:-10599787 | None:intergenic |
| GACCAGAGAGTTATCCTAGT+GGG | 0.595402 | 5.1:+10597058 | MS.gene56982:CDS |
| TCACTTTGACATCATTAGCA+GGG | 0.599089 | 5.1:-10600128 | None:intergenic |
| ATAAGCCAGCATACCTCAGG+TGG | 0.609961 | 5.1:-10599807 | None:intergenic |
| AAGAAGCTTACATCAGGAGA+AGG | 0.612458 | 5.1:-10597169 | None:intergenic |
| CGAAGTCACAACCCTAGACA+TGG | 0.616290 | 5.1:+10596940 | MS.gene56982:CDS |
| CTTCTTGAGTCTACTCCAAG+AGG | 0.623407 | 5.1:+10597186 | MS.gene56982:CDS |
| AGAGTCACAAAAGATAACTA+CGG | 0.623664 | 5.1:+10600024 | MS.gene56982:CDS |
| AGGTGGGATGTGTATATCTG+TGG | 0.625917 | 5.1:+10597090 | MS.gene56982:CDS |
| GAATTGTGGTCCAAATAACA+TGG | 0.628245 | 5.1:-10599757 | None:intergenic |
| CACCTAAGCTATGACCCACT+AGG | 0.629760 | 5.1:-10597072 | None:intergenic |
| TAGTGGGTCATAGCTTAGGT+GGG | 0.639168 | 5.1:+10597074 | MS.gene56982:CDS |
| TGTACCAACACCATGCCCCA+TGG | 0.644751 | 5.1:-10596886 | None:intergenic |
| GCTTTCGGTTTAGAGAACAT+AGG | 0.656314 | 5.1:-10600171 | None:intergenic |
| GTTTAGAGAACATAGGCATG+TGG | 0.663433 | 5.1:-10600164 | None:intergenic |
| CCTTAGTAATGACAATGCAA+GGG | 0.667410 | 5.1:-10599956 | None:intergenic |
| ACCACAATTCTTAGCAACCA+AGG | 0.672825 | 5.1:+10599770 | MS.gene56982:CDS |
| GATTCATGGATCTTGCCATG+GGG | 0.682835 | 5.1:+10596871 | MS.gene56982:CDS |
| GTATCAACTATCTCCACCTG+AGG | 0.688226 | 5.1:+10599794 | MS.gene56982:CDS |
| AGACCAGAGAGTTATCCTAG+TGG | 0.747538 | 5.1:+10597057 | MS.gene56982:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATCCATATAATAAA+TGG | + | chr5.1:10597408-10597427 | MS.gene56982:intron | 10.0% |
| !! | AAAAAATCCATATAATAAAT+GGG | + | chr5.1:10597409-10597428 | MS.gene56982:intron | 10.0% |
| !! | AAATACATTAATTAATTCTT+GGG | + | chr5.1:10598818-10598837 | MS.gene56982:intron | 10.0% |
| !! | AAATTCAAAAATAATATAGT+TGG | + | chr5.1:10597322-10597341 | MS.gene56982:intron | 10.0% |
| !! | AATTCAAAAATAATATAGTT+GGG | + | chr5.1:10597323-10597342 | MS.gene56982:intron | 10.0% |
| !! | GAAAAAGATATAAAATAAAT+AGG | - | chr5.1:10599288-10599307 | None:intergenic | 10.0% |
| !! | TTAATTTAAAGAATTGATTA+TGG | - | chr5.1:10598103-10598122 | None:intergenic | 10.0% |
| !!! | TTTTTTAATTCTTTTTTGTT+TGG | - | chr5.1:10597394-10597413 | None:intergenic | 10.0% |
| !! | AATCGTTAATTAACATATTA+AGG | - | chr5.1:10597540-10597559 | None:intergenic | 15.0% |
| !! | ATAAAAGAGATCTTATTATA+AGG | - | chr5.1:10598339-10598358 | None:intergenic | 15.0% |
| !! | ATCGTTAATTAACATATTAA+GGG | - | chr5.1:10597539-10597558 | None:intergenic | 15.0% |
| !! | ATTCAAAAATAATATAGTTG+GGG | + | chr5.1:10597324-10597343 | MS.gene56982:intron | 15.0% |
| !! | CAAATACATTAATTAATTCT+TGG | + | chr5.1:10598817-10598836 | MS.gene56982:intron | 15.0% |
| !! | GTGTAAATTAAGAAAATTAA+TGG | + | chr5.1:10597463-10597482 | MS.gene56982:intron | 15.0% |
| !! | TAAAAGAGATCTTATTATAA+GGG | - | chr5.1:10598338-10598357 | None:intergenic | 15.0% |
| !! | TATAATATTTATTATGAACC+TGG | - | chr5.1:10597613-10597632 | None:intergenic | 15.0% |
| !!! | CAAAGAATTTAAAAGTATTT+TGG | - | chr5.1:10599878-10599897 | None:intergenic | 15.0% |
| !! | AAGAATTAAGGAAAATTCTA+TGG | - | chr5.1:10599253-10599272 | None:intergenic | 20.0% |
| !! | AGAATTGATTATGGTATATT+TGG | - | chr5.1:10598094-10598113 | None:intergenic | 20.0% |
| !! | ATGTATTTGAAAATACCAAA+AGG | - | chr5.1:10598806-10598825 | None:intergenic | 20.0% |
| !! | CAGTAATTGAAGAAAAAATA+TGG | - | chr5.1:10599633-10599652 | None:intergenic | 20.0% |
| !! | TTTAACACATTATCTTTGAT+TGG | - | chr5.1:10598294-10598313 | None:intergenic | 20.0% |
| !!! | AGACAATTTTTTTCTTCAAA+AGG | - | chr5.1:10598770-10598789 | None:intergenic | 20.0% |
| !!! | TAAAATAAATAGGAGTATGT+TGG | - | chr5.1:10599278-10599297 | None:intergenic | 20.0% |
| !!! | TGATTTGTTAAAATTCACAT+AGG | + | chr5.1:10598212-10598231 | MS.gene56982:intron | 20.0% |
| !!! | TTCAAAAGGTCTTATATTTA+GGG | - | chr5.1:10598756-10598775 | None:intergenic | 20.0% |
| ! | AAAATGCTTATATATGAACC+AGG | + | chr5.1:10599927-10599946 | MS.gene56982:intron | 25.0% |
| ! | AACAAAAATAATAAAGGGAG+AGG | - | chr5.1:10598464-10598483 | None:intergenic | 25.0% |
| ! | ACTATTTCAGTCTAAACTTA+GGG | - | chr5.1:10599556-10599575 | None:intergenic | 25.0% |
| ! | AGTGAATTACTCACTTTAAA+AGG | + | chr5.1:10597586-10597605 | MS.gene56982:intron | 25.0% |
| ! | ATATGAGAAAGCTCAAAATA+AGG | - | chr5.1:10597223-10597242 | None:intergenic | 25.0% |
| ! | ATTGTCAATTTGTGAAAGTT+TGG | + | chr5.1:10599491-10599510 | MS.gene56982:intron | 25.0% |
| ! | CAATGTCATAAGAAATTGAA+TGG | + | chr5.1:10598528-10598547 | MS.gene56982:intron | 25.0% |
| ! | GAAGTTAAGAAAATTGAAAG+TGG | - | chr5.1:10599405-10599424 | None:intergenic | 25.0% |
| ! | TACTATTTCAGTCTAAACTT+AGG | - | chr5.1:10599557-10599576 | None:intergenic | 25.0% |
| ! | TCAAACAGAATCAATTCTAA+AGG | + | chr5.1:10598043-10598062 | MS.gene56982:intron | 25.0% |
| ! | TTAATAGTTATCATCAACTC+TGG | + | chr5.1:10597250-10597269 | MS.gene56982:intron | 25.0% |
| ! | TTGTCAATTTGTGAAAGTTT+GGG | + | chr5.1:10599492-10599511 | MS.gene56982:intron | 25.0% |
| ! | TTTAGTTGTCCAATTAAGAT+TGG | - | chr5.1:10597661-10597680 | None:intergenic | 25.0% |
| ! | TTTGTTAGGAAATAATTCCA+TGG | - | chr5.1:10597116-10597135 | None:intergenic | 25.0% |
| !! | AACCATTTGGTTTATCATTT+GGG | - | chr5.1:10599737-10599756 | None:intergenic | 25.0% |
| !! | AGTATGTTGGTAAAGAATTA+AGG | - | chr5.1:10599265-10599284 | None:intergenic | 25.0% |
| !! | CTCTTTTTATAAGATCCTTT+TGG | + | chr5.1:10598788-10598807 | MS.gene56982:intron | 25.0% |
| !! | CTTCAAAAGGTCTTATATTT+AGG | - | chr5.1:10598757-10598776 | None:intergenic | 25.0% |
| !! | GACAACTAAAAATCTTTTGA+CGG | + | chr5.1:10597671-10597690 | MS.gene56982:intron | 25.0% |
| !! | GTGAATTACTCACTTTAAAA+GGG | + | chr5.1:10597587-10597606 | MS.gene56982:intron | 25.0% |
| !! | TGATTGGTTAAAATTCACAT+GGG | - | chr5.1:10598278-10598297 | None:intergenic | 25.0% |
| !! | TTGATTGGTTAAAATTCACA+TGG | - | chr5.1:10598279-10598298 | None:intergenic | 25.0% |
| !!! | CTTTATTCACTTTAGAGTTT+AGG | - | chr5.1:10597444-10597463 | None:intergenic | 25.0% |
| !!! | GGACACTTTTGAAAAAATAA+TGG | - | chr5.1:10599427-10599446 | None:intergenic | 25.0% |
| !!! | GGTTGCTTTCAATTTTTTAT+AGG | - | chr5.1:10599612-10599631 | None:intergenic | 25.0% |
| !!! | TCAAAAGTGTCCTATAATTA+AGG | + | chr5.1:10599435-10599454 | MS.gene56982:intron | 25.0% |
| !!! | TTTTGGCTAAATTTCACTTT+TGG | - | chr5.1:10599518-10599537 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTCTCACTCAAGT+AGG | - | chr5.1:10598143-10598162 | None:intergenic | 25.0% |
| AAGATTCGTCCAATCTTAAT+TGG | + | chr5.1:10597649-10597668 | MS.gene56982:intron | 30.0% | |
| AGAGTCACAAAAGATAACTA+CGG | + | chr5.1:10600024-10600043 | MS.gene56982:CDS | 30.0% | |
| AGCTATGTGACAATTTATCA+CGG | + | chr5.1:10597856-10597875 | MS.gene56982:intron | 30.0% | |
| ATCCATATAATAAATGGGCA+AGG | + | chr5.1:10597414-10597433 | MS.gene56982:intron | 30.0% | |
| ATCCTTGCCCATTTATTATA+TGG | - | chr5.1:10597419-10597438 | None:intergenic | 30.0% | |
| ATTGCAGAATACACAAAGAT+TGG | + | chr5.1:10599674-10599693 | MS.gene56982:intron | 30.0% | |
| ATTGGTGCGATGATAATTAT+TGG | - | chr5.1:10598387-10598406 | None:intergenic | 30.0% | |
| ATTGTTTATTGCCTCATTAG+AGG | - | chr5.1:10598430-10598449 | None:intergenic | 30.0% | |
| ATTTGTAGAATGGCATCAAA+AGG | - | chr5.1:10599157-10599176 | None:intergenic | 30.0% | |
| CTATTTCAGTCTAAACTTAG+GGG | - | chr5.1:10599555-10599574 | None:intergenic | 30.0% | |
| GACCTTAGAAATTCAATCAA+CGG | - | chr5.1:10597028-10597047 | None:intergenic | 30.0% | |
| TAATAATGCTTGCAACATCT+TGG | + | chr5.1:10598955-10598974 | MS.gene56982:intron | 30.0% | |
| TAGATGATGTGTTAGTGATA+AGG | + | chr5.1:10597831-10597850 | MS.gene56982:intron | 30.0% | |
| TCATAAGAAATTGAATGGTG+AGG | + | chr5.1:10598533-10598552 | MS.gene56982:intron | 30.0% | |
| TCATTTATCTCTATCACAAC+CGG | + | chr5.1:10598503-10598522 | MS.gene56982:intron | 30.0% | |
| TCTAATGAGGCAATAAACAA+TGG | + | chr5.1:10598429-10598448 | MS.gene56982:intron | 30.0% | |
| TCTTAAGTGTTACACTTTGT+GGG | + | chr5.1:10599046-10599065 | MS.gene56982:intron | 30.0% | |
| TTGTAGGACCCATATAAATT+TGG | + | chr5.1:10598247-10598266 | MS.gene56982:intron | 30.0% | |
| ! | AACCGTTGATTGAATTTCTA+AGG | + | chr5.1:10597023-10597042 | MS.gene56982:CDS | 30.0% |
| ! | ATTTGAGATACGTTCTTCAT+GGG | - | chr5.1:10598611-10598630 | None:intergenic | 30.0% |
| ! | GAACCATTTGGTTTATCATT+TGG | - | chr5.1:10599738-10599757 | None:intergenic | 30.0% |
| ! | GTTACTTTGTTAAAATCTGC+TGG | + | chr5.1:10596914-10596933 | MS.gene56982:CDS | 30.0% |
| ! | TACATGCACTATTTTATCGT+TGG | + | chr5.1:10598981-10599000 | MS.gene56982:intron | 30.0% |
| ! | TCTTTTATCTCAGTCATTAG+AGG | + | chr5.1:10598351-10598370 | MS.gene56982:intron | 30.0% |
| !!! | AGTCATGAGAATGACTTTTT+TGG | - | chr5.1:10599227-10599246 | None:intergenic | 30.0% |
| !!! | GGGTGAGTTGTAATTTTTTT+TGG | - | chr5.1:10599535-10599554 | None:intergenic | 30.0% |
| AAGGATAATCAAGTACCTCT+TGG | - | chr5.1:10597204-10597223 | None:intergenic | 35.0% | |
| AAGGCGGTACTTTAAATTTG+GGG | + | chr5.1:10599461-10599480 | MS.gene56982:intron | 35.0% | |
| AATTTCTTATGACATTGCCC+CGG | - | chr5.1:10598525-10598544 | None:intergenic | 35.0% | |
| ACACTAACTCTCTCTCATAA+AGG | + | chr5.1:10599340-10599359 | MS.gene56982:intron | 35.0% | |
| AGCCCAAATGATAAACCAAA+TGG | + | chr5.1:10599732-10599751 | MS.gene56982:CDS | 35.0% | |
| AGGACCCATATAAATTTGGT+GGG | + | chr5.1:10598251-10598270 | MS.gene56982:intron | 35.0% | |
| ATCACTTTGACATCATTAGC+AGG | - | chr5.1:10600132-10600151 | None:intergenic | 35.0% | |
| ATGCCATTCTACAAATAGTG+GGG | + | chr5.1:10599161-10599180 | MS.gene56982:intron | 35.0% | |
| ATTTATCTCTATCACAACCG+GGG | + | chr5.1:10598505-10598524 | MS.gene56982:intron | 35.0% | |
| CATTTATCTCTATCACAACC+GGG | + | chr5.1:10598504-10598523 | MS.gene56982:intron | 35.0% | |
| CCAAATAACATGGAACCATT+TGG | - | chr5.1:10599750-10599769 | None:intergenic | 35.0% | |
| CCAAATGGTTCCATGTTATT+TGG | + | chr5.1:10599747-10599766 | MS.gene56982:CDS | 35.0% | |
| CCTTAGTAATGACAATGCAA+GGG | - | chr5.1:10599959-10599978 | None:intergenic | 35.0% | |
| CTTAAGTGTTACACTTTGTG+GGG | + | chr5.1:10599047-10599066 | MS.gene56982:intron | 35.0% | |
| GAAGGCGGTACTTTAAATTT+GGG | + | chr5.1:10599460-10599479 | MS.gene56982:intron | 35.0% | |
| GAATTGTGGTCCAAATAACA+TGG | - | chr5.1:10599760-10599779 | None:intergenic | 35.0% | |
| GATGCCATTCTACAAATAGT+GGG | + | chr5.1:10599160-10599179 | MS.gene56982:intron | 35.0% | |
| GTCTTAAGTGTTACACTTTG+TGG | + | chr5.1:10599045-10599064 | MS.gene56982:intron | 35.0% | |
| TAGGACCCATATAAATTTGG+TGG | + | chr5.1:10598250-10598269 | MS.gene56982:intron | 35.0% | |
| TCACTTTGACATCATTAGCA+GGG | - | chr5.1:10600131-10600150 | None:intergenic | 35.0% | |
| TCATCGCACCAATAAAGTAT+TGG | + | chr5.1:10598394-10598413 | MS.gene56982:intron | 35.0% | |
| TCATCGCACCAATACTTTAT+TGG | - | chr5.1:10598405-10598424 | None:intergenic | 35.0% | |
| TGATGCCATTCTACAAATAG+TGG | + | chr5.1:10599159-10599178 | MS.gene56982:intron | 35.0% | |
| TGTCCTATAATTAAGGACGA+AGG | + | chr5.1:10599442-10599461 | MS.gene56982:intron | 35.0% | |
| TTAATTCTTGGGAGCTTCTA+CGG | + | chr5.1:10598829-10598848 | MS.gene56982:intron | 35.0% | |
| ! | AAGGTCTTATATTTAGGGAC+AGG | - | chr5.1:10598751-10598770 | None:intergenic | 35.0% |
| ! | AGGTCTTATATTTAGGGACA+GGG | - | chr5.1:10598750-10598769 | None:intergenic | 35.0% |
| ! | CACTCATGTGATATTTTCGT+TGG | - | chr5.1:10598580-10598599 | None:intergenic | 35.0% |
| ! | GATATTTTCGTTGGAGGAAA+TGG | - | chr5.1:10598571-10598590 | None:intergenic | 35.0% |
| ! | GATGAATTGATGATACTCTG+AGG | + | chr5.1:10599126-10599145 | MS.gene56982:intron | 35.0% |
| ! | GATTTGAGATACGTTCTTCA+TGG | - | chr5.1:10598612-10598631 | None:intergenic | 35.0% |
| ! | TCATGTGATATTTTCGTTGG+AGG | - | chr5.1:10598577-10598596 | None:intergenic | 35.0% |
| !! | AGACATTTCGTGTTGATTCA+TGG | + | chr5.1:10596857-10596876 | MS.gene56982:CDS | 35.0% |
| AAGAAGCTTACATCAGGAGA+AGG | - | chr5.1:10597172-10597191 | None:intergenic | 40.0% | |
| ACAAAGATTGGATTCCAGCT+TGG | + | chr5.1:10599686-10599705 | MS.gene56982:CDS | 40.0% | |
| ACACCCCACTATTTGTAGAA+TGG | - | chr5.1:10599167-10599186 | None:intergenic | 40.0% | |
| ACCACAATTCTTAGCAACCA+AGG | + | chr5.1:10599770-10599789 | MS.gene56982:CDS | 40.0% | |
| ACCTTGGTTGCTAAGAATTG+TGG | - | chr5.1:10599774-10599793 | None:intergenic | 40.0% | |
| AGACTCAAGAAGCTTACATC+AGG | - | chr5.1:10597178-10597197 | None:intergenic | 40.0% | |
| AGGCGGTACTTTAAATTTGG+GGG | + | chr5.1:10599462-10599481 | MS.gene56982:intron | 40.0% | |
| CAGCTTGGACACAAAGATTA+CGG | + | chr5.1:10599701-10599720 | MS.gene56982:CDS | 40.0% | |
| CCCTTGCATTGTCATTACTA+AGG | + | chr5.1:10599956-10599975 | MS.gene56982:CDS | 40.0% | |
| CCTATAATTAAGGACGAAGG+CGG | + | chr5.1:10599445-10599464 | MS.gene56982:intron | 40.0% | |
| CGAAGGCGGTACTTTAAATT+TGG | + | chr5.1:10599459-10599478 | MS.gene56982:intron | 40.0% | |
| CGTAACATGCACTTGAGATA+TGG | - | chr5.1:10598720-10598739 | None:intergenic | 40.0% | |
| GCCTTAGTAATGACAATGCA+AGG | - | chr5.1:10599960-10599979 | None:intergenic | 40.0% | |
| GCTCTAACACTTTGTCTTGT+TGG | - | chr5.1:10600077-10600096 | None:intergenic | 40.0% | |
| GCTTTCGGTTTAGAGAACAT+AGG | - | chr5.1:10600174-10600193 | None:intergenic | 40.0% | |
| GGGTCCCACCAAATTTATAT+GGG | - | chr5.1:10598258-10598277 | None:intergenic | 40.0% | |
| GTTTAGAGAACATAGGCATG+TGG | - | chr5.1:10600167-10600186 | None:intergenic | 40.0% | |
| TAGGTTCCAGCAAATCTTGT+AGG | + | chr5.1:10598231-10598250 | MS.gene56982:intron | 40.0% | |
| TGATTCATGGATCTTGCCAT+GGG | + | chr5.1:10596870-10596889 | MS.gene56982:CDS | 40.0% | |
| TGGGTCCCACCAAATTTATA+TGG | - | chr5.1:10598259-10598278 | None:intergenic | 40.0% | |
| TTGATTCATGGATCTTGCCA+TGG | + | chr5.1:10596869-10596888 | MS.gene56982:CDS | 40.0% | |
| TTGGCACACAATGAACACTT+TGG | - | chr5.1:10600058-10600077 | None:intergenic | 40.0% | |
| ! | ACAGCAGCTGCAATTTTGTT+AGG | - | chr5.1:10597130-10597149 | None:intergenic | 40.0% |
| ! | AGATATGCACAAAGCGCTTT+CGG | - | chr5.1:10600189-10600208 | None:intergenic | 40.0% |
| ! | TGGAGATAGTTGATACACCT+TGG | - | chr5.1:10599790-10599809 | None:intergenic | 40.0% |
| ! | TTACTCACTTTAAAAGGGCC+AGG | + | chr5.1:10597592-10597611 | MS.gene56982:intron | 40.0% |
| AACATAAGCCAGCATACCTC+AGG | - | chr5.1:10599813-10599832 | None:intergenic | 45.0% | |
| AGACCAGAGAGTTATCCTAG+TGG | + | chr5.1:10597057-10597076 | MS.gene56982:CDS | 45.0% | |
| AGGTGGGATGTGTATATCTG+TGG | + | chr5.1:10597090-10597109 | MS.gene56982:CDS | 45.0% | |
| ATGGGTCCTACAAGATTTGC+TGG | - | chr5.1:10598240-10598259 | None:intergenic | 45.0% | |
| CCGCCTTCGTCCTTAATTAT+AGG | - | chr5.1:10599448-10599467 | None:intergenic | 45.0% | |
| CGTAATCTTTGTGTCCAAGC+TGG | - | chr5.1:10599703-10599722 | None:intergenic | 45.0% | |
| CTTCTTGAGTCTACTCCAAG+AGG | + | chr5.1:10597186-10597205 | MS.gene56982:CDS | 45.0% | |
| GACCAGAGAGTTATCCTAGT+GGG | + | chr5.1:10597058-10597077 | MS.gene56982:CDS | 45.0% | |
| GATACGTTCTTCATGGGATG+AGG | - | chr5.1:10598605-10598624 | None:intergenic | 45.0% | |
| GATGTGTATATCTGTGGCCA+TGG | + | chr5.1:10597096-10597115 | MS.gene56982:CDS | 45.0% | |
| GATTCATGGATCTTGCCATG+GGG | + | chr5.1:10596871-10596890 | MS.gene56982:CDS | 45.0% | |
| GTAATGACAATGCAAGGGAC+AGG | - | chr5.1:10599954-10599973 | None:intergenic | 45.0% | |
| GTATCAACTATCTCCACCTG+AGG | + | chr5.1:10599794-10599813 | MS.gene56982:CDS | 45.0% | |
| GTGCGATGATTCCTCTAATG+AGG | + | chr5.1:10598416-10598435 | MS.gene56982:intron | 45.0% | |
| TGCACTTGAGATATGGCTCA+CGG | - | chr5.1:10598713-10598732 | None:intergenic | 45.0% | |
| TGTCATTACTAAGGCCTGCT+AGG | + | chr5.1:10599965-10599984 | MS.gene56982:CDS | 45.0% | |
| TGTGACTCGTGTATCTAACG+AGG | + | chr5.1:10597284-10597303 | MS.gene56982:intron | 45.0% | |
| ! | ATCCTAGTGGGTCATAGCTT+AGG | + | chr5.1:10597070-10597089 | MS.gene56982:CDS | 45.0% |
| ! | GGGGTGTTACGCTTATAACA+AGG | + | chr5.1:10599066-10599085 | MS.gene56982:intron | 45.0% |
| ! | TAGTGGGTCATAGCTTAGGT+GGG | + | chr5.1:10597074-10597093 | MS.gene56982:CDS | 45.0% |
| !! | AGGATAACTCTCTGGTCTTG+TGG | - | chr5.1:10597055-10597074 | None:intergenic | 45.0% |
| !! | AATTATAACAAAAATAATAA+AGG | - | chr5.1:10598470-10598489 | None:intergenic | 5.0% |
| !! | ATTATAACAAAAATAATAAA+GGG | - | chr5.1:10598469-10598488 | None:intergenic | 5.0% |
| ATAAGCCAGCATACCTCAGG+TGG | - | chr5.1:10599810-10599829 | None:intergenic | 50.0% | |
| CACCTAAGCTATGACCCACT+AGG | - | chr5.1:10597075-10597094 | None:intergenic | 50.0% | |
| CGAAGTCACAACCCTAGACA+TGG | + | chr5.1:10596940-10596959 | MS.gene56982:CDS | 50.0% | |
| GACCCACTAGGATAACTCTC+TGG | - | chr5.1:10597063-10597082 | None:intergenic | 50.0% | |
| TATCTCCACCTGAGGTATGC+TGG | + | chr5.1:10599802-10599821 | MS.gene56982:intron | 50.0% | |
| TCATCACCATAGCTCCTAGC+AGG | - | chr5.1:10599982-10600001 | None:intergenic | 50.0% | |
| TCCAAAGCAAGTGCATGAGC+TGG | + | chr5.1:10596979-10596998 | MS.gene56982:CDS | 50.0% | |
| TCCAGAAGCAGCCATGTCTA+GGG | - | chr5.1:10596954-10596973 | None:intergenic | 50.0% | |
| TCCAGCTCATGCACTTGCTT+TGG | - | chr5.1:10596983-10597002 | None:intergenic | 50.0% | |
| TTCCAGAAGCAGCCATGTCT+AGG | - | chr5.1:10596955-10596974 | None:intergenic | 50.0% | |
| ! | CTAGTGGGTCATAGCTTAGG+TGG | + | chr5.1:10597073-10597092 | MS.gene56982:CDS | 50.0% |
| ! | GCTCATGCACTTGCTTTGGA+TGG | - | chr5.1:10596979-10596998 | None:intergenic | 50.0% |
| ACAATGCAAGGGACAGGTCC+TGG | - | chr5.1:10599948-10599967 | None:intergenic | 55.0% | |
| ACCCTAGACATGGCTGCTTC+TGG | + | chr5.1:10596950-10596969 | MS.gene56982:CDS | 55.0% | |
| ATGGATCTTGCCATGGGGCA+TGG | + | chr5.1:10596876-10596895 | MS.gene56982:CDS | 55.0% | |
| CTAAGGCCTGCTAGGAGCTA+TGG | + | chr5.1:10599973-10599992 | MS.gene56982:CDS | 55.0% | |
| TGTACCAACACCATGCCCCA+TGG | - | chr5.1:10596889-10596908 | None:intergenic | 55.0% | |
| !! | TGGGGCATGGTGTTGGTACA+AGG | + | chr5.1:10596889-10596908 | MS.gene56982:CDS | 55.0% |
| CTTGCCATGGGGCATGGTGT+TGG | + | chr5.1:10596882-10596901 | MS.gene56982:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 10596839 | 10600236 | 10596839 | ID=MS.gene56982 |
| chr5.1 | mRNA | 10596839 | 10600236 | 10596839 | ID=MS.gene56982.t1;Parent=MS.gene56982 |
| chr5.1 | exon | 10596839 | 10597207 | 10596839 | ID=MS.gene56982.t1.exon1;Parent=MS.gene56982.t1 |
| chr5.1 | CDS | 10596839 | 10597207 | 10596839 | ID=cds.MS.gene56982.t1;Parent=MS.gene56982.t1 |
| chr5.1 | exon | 10599681 | 10599815 | 10599681 | ID=MS.gene56982.t1.exon2;Parent=MS.gene56982.t1 |
| chr5.1 | CDS | 10599681 | 10599815 | 10599681 | ID=cds.MS.gene56982.t1;Parent=MS.gene56982.t1 |
| chr5.1 | exon | 10599949 | 10600236 | 10599949 | ID=MS.gene56982.t1.exon3;Parent=MS.gene56982.t1 |
| chr5.1 | CDS | 10599949 | 10600236 | 10599949 | ID=cds.MS.gene56982.t1;Parent=MS.gene56982.t1 |
| Gene Sequence |
| Protein sequence |
