Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57088.t1 | XP_024641666.1 | 93.8 | 643 | 40 | 0 | 1 | 643 | 1 | 643 | 0.00E+00 | 1231.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57088.t1 | Q9SGH6 | 71.9 | 636 | 178 | 1 | 9 | 643 | 4 | 639 | 1.9e-278 | 959.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57088.t1 | A0A072U5H0 | 93.5 | 603 | 39 | 0 | 41 | 643 | 19 | 621 | 0.0e+00 | 1155.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050689 | MS.gene57088 | 0.800361 | 1.49E-48 | -1.69E-46 |
| MS.gene051279 | MS.gene57088 | 0.829727 | 4.38E-55 | -1.69E-46 |
| MS.gene05157 | MS.gene57088 | 0.825419 | 4.74E-54 | -1.69E-46 |
| MS.gene051720 | MS.gene57088 | 0.808152 | 3.56E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene57088 | 0.802371 | 5.79E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene57088 | 0.801753 | 7.76E-49 | -1.69E-46 |
| MS.gene053171 | MS.gene57088 | 0.81399 | 1.94E-51 | -1.69E-46 |
| MS.gene053581 | MS.gene57088 | 0.824645 | 7.21E-54 | -1.69E-46 |
| MS.gene054554 | MS.gene57088 | 0.805729 | 1.16E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene57088 | 0.80629 | 8.84E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene57088 | 0.805167 | 1.52E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene57088 | 0.82449 | 7.85E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene040150 | MS.gene57088 | PPI |
| MS.gene57088 | MS.gene93781 | PPI |
| MS.gene62619 | MS.gene57088 | PPI |
| MS.gene95891 | MS.gene57088 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57088.t1 | MTR_6g007770 | 95.025 | 603 | 30 | 0 | 41 | 643 | 19 | 621 | 0.0 | 1195 |
| MS.gene57088.t1 | MTR_6g007767 | 82.115 | 643 | 115 | 0 | 1 | 643 | 1 | 643 | 0.0 | 1134 |
| MS.gene57088.t1 | MTR_6g007763 | 79.412 | 646 | 128 | 3 | 1 | 643 | 1 | 644 | 0.0 | 1069 |
| MS.gene57088.t1 | MTR_6g007767 | 81.898 | 569 | 103 | 0 | 1 | 569 | 1 | 569 | 0.0 | 998 |
| MS.gene57088.t1 | MTR_6g007767 | 83.661 | 508 | 83 | 0 | 136 | 643 | 1 | 508 | 0.0 | 905 |
| MS.gene57088.t1 | MTR_8g106800 | 63.183 | 622 | 222 | 2 | 22 | 640 | 12 | 629 | 0.0 | 799 |
| MS.gene57088.t1 | MTR_6g007767 | 81.429 | 420 | 78 | 0 | 1 | 420 | 1 | 420 | 0.0 | 746 |
| MS.gene57088.t1 | MTR_6g007767 | 80.998 | 421 | 80 | 0 | 1 | 421 | 1 | 421 | 0.0 | 744 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57088.t1 | AT3G01420 | 72.642 | 636 | 173 | 1 | 9 | 643 | 4 | 639 | 0.0 | 972 |
| MS.gene57088.t1 | AT1G73680 | 64.516 | 620 | 218 | 2 | 21 | 640 | 11 | 628 | 0.0 | 831 |
| MS.gene57088.t1 | AT1G73680 | 63.275 | 629 | 220 | 4 | 21 | 640 | 11 | 637 | 0.0 | 816 |
| MS.gene57088.t1 | AT1G73680 | 65.830 | 518 | 176 | 1 | 123 | 640 | 3 | 519 | 0.0 | 709 |
| MS.gene57088.t1 | AT1G73680 | 66.526 | 475 | 158 | 1 | 166 | 640 | 1 | 474 | 0.0 | 661 |
Find 151 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACTTCATGGAAATCTTTA+TGG | 0.101346 | 6.2:-3618464 | None:intergenic |
| TTGCTACTCCATCTTCATTT+TGG | 0.160377 | 6.2:-3620896 | None:intergenic |
| TTTATTTAGGTATGGATTAT+TGG | 0.165781 | 6.2:+3621585 | MS.gene57088:intron |
| TCTCTTGGGCCTATTGTATT+TGG | 0.181493 | 6.2:+3619274 | MS.gene57088:CDS |
| CTTCAAGTGCTTTCTCTGTT+TGG | 0.185040 | 6.2:+3623378 | MS.gene57088:CDS |
| CATTGTGTTCTTGAATAAAA+AGG | 0.197269 | 6.2:-3620968 | None:intergenic |
| TATTGATACCTATTTCAAAA+TGG | 0.222014 | 6.2:+3622703 | MS.gene57088:CDS |
| GGCTGGTGTCTCAACTTTGC+AGG | 0.228515 | 6.2:+3620944 | MS.gene57088:CDS |
| GGAATTGGATTGTCTTTGTT+TGG | 0.229305 | 6.2:-3623410 | None:intergenic |
| TGCAAGAGCATTAGTGTCTA+TGG | 0.246157 | 6.2:+3622402 | MS.gene57088:CDS |
| GAATTGGATTGTCTTTGTTT+GGG | 0.253532 | 6.2:-3623409 | None:intergenic |
| GTTCTATATGGATAATCATT+AGG | 0.263833 | 6.2:-3619371 | None:intergenic |
| TTATTTAGGTATGGATTATT+GGG | 0.264621 | 6.2:+3621586 | MS.gene57088:intron |
| TTCAAGTGCTTTCTCTGTTT+GGG | 0.278891 | 6.2:+3623379 | MS.gene57088:CDS |
| TCTTCTGAATTGGTTATATC+TGG | 0.284000 | 6.2:-3622673 | None:intergenic |
| AATTCTTCAGTTAGAGAGTA+TGG | 0.287850 | 6.2:-3621697 | None:intergenic |
| GAAGATGGAGTAGCAATTTC+AGG | 0.292686 | 6.2:+3620903 | MS.gene57088:CDS |
| TAATAAATGATGCAGTTTAT+AGG | 0.295800 | 6.2:+3622631 | MS.gene57088:intron |
| TATTGTAACAAGATTTCTAA+TGG | 0.300529 | 6.2:-3618424 | None:intergenic |
| TGAGGAGACATACACCAAAA+AGG | 0.300584 | 6.2:+3623271 | MS.gene57088:CDS |
| GCACCGTTTACCTGTTCTCT+TGG | 0.305249 | 6.2:+3619259 | MS.gene57088:CDS |
| AAAACTGACACTTTGCTTGC+AGG | 0.315806 | 6.2:+3621216 | MS.gene57088:CDS |
| TTTCCATCAGCAGTTCTATA+TGG | 0.317935 | 6.2:-3619383 | None:intergenic |
| ATGGATAGTTTCCAAGTGTT+AGG | 0.324477 | 6.2:-3622444 | None:intergenic |
| ATAATAATGCTCTTCTGAAT+TGG | 0.331174 | 6.2:-3622683 | None:intergenic |
| CATCTATGTTCTGTGGTACT+AGG | 0.336758 | 6.2:-3622480 | None:intergenic |
| AATAAATGATGCAGTTTATA+GGG | 0.338380 | 6.2:+3622632 | MS.gene57088:intron |
| GGTGGTGGCCACAAAACTTT+TGG | 0.347715 | 6.2:+3619719 | MS.gene57088:CDS |
| TTGCAGGCATGCGTGGAAAT+TGG | 0.352398 | 6.2:+3621232 | MS.gene57088:CDS |
| GAACACAACTGAAAGTTTAA+AGG | 0.353592 | 6.2:+3623307 | MS.gene57088:CDS |
| ATACGAAGATAAAGTGGAAT+TGG | 0.356112 | 6.2:-3623425 | None:intergenic |
| GACAAACAGCTGTAGGAGTT+AGG | 0.366038 | 6.2:+3619342 | MS.gene57088:CDS |
| AAGAAATTCAAGGACACGTT+TGG | 0.370488 | 6.2:+3621610 | MS.gene57088:CDS |
| TTCTATATGGATAATCATTA+GGG | 0.374278 | 6.2:-3619370 | None:intergenic |
| TCTATGGGTCATCAAACTTC+TGG | 0.375181 | 6.2:+3622418 | MS.gene57088:CDS |
| CAGGTGATGTTCGTAATAGT+TGG | 0.375562 | 6.2:+3620922 | MS.gene57088:CDS |
| CCATTGACAAGCTTGGAATA+TGG | 0.378143 | 6.2:+3619237 | MS.gene57088:CDS |
| TTGGCATACTCTTTGATTAG+TGG | 0.381268 | 6.2:-3621808 | None:intergenic |
| AGGGATGGAAGTGTGATATA+TGG | 0.381936 | 6.2:+3620795 | MS.gene57088:intron |
| TTCAATTTATGATACATGAT+TGG | 0.382105 | 6.2:+3619799 | MS.gene57088:CDS |
| GAAGGAGGCTAGAGGCTGAT+AGG | 0.395767 | 6.2:+3623228 | MS.gene57088:intron |
| AAAGTATTGGAAGAGGTATA+TGG | 0.396188 | 6.2:+3622756 | MS.gene57088:CDS |
| ACATGATTGGATAGACCATT+TGG | 0.400463 | 6.2:+3619812 | MS.gene57088:CDS |
| GTGGCCACCACCATAGGGTC+TGG | 0.404951 | 6.2:-3619708 | None:intergenic |
| CAAAGATTCACACTATAGAT+TGG | 0.406140 | 6.2:+3621178 | MS.gene57088:CDS |
| GGAAGTCAAGGGTCTTTCAT+TGG | 0.407694 | 6.2:+3619434 | MS.gene57088:CDS |
| TCTTTACCGCCATGCTAGAT+TGG | 0.408691 | 6.2:+3621137 | MS.gene57088:CDS |
| CACCGTTTACCTGTTCTCTT+GGG | 0.408694 | 6.2:+3619260 | MS.gene57088:CDS |
| CTTAGTCAAATTGATTAACT+AGG | 0.410409 | 6.2:-3623449 | None:intergenic |
| AAGAATTTGTCAGTGTCTAT+AGG | 0.411562 | 6.2:+3621713 | MS.gene57088:CDS |
| ATTGATACCTATTTCAAAAT+GGG | 0.416616 | 6.2:+3622704 | MS.gene57088:CDS |
| CATGGCAGAGAAGAAGATAA+AGG | 0.425013 | 6.2:+3622815 | MS.gene57088:CDS |
| TCTCTCAAATGCAAAGAATC+AGG | 0.426183 | 6.2:-3621751 | None:intergenic |
| ATTGTAACAAGATTTCTAAT+GGG | 0.427560 | 6.2:-3618423 | None:intergenic |
| GGAAGATTTGACAGATGATA+AGG | 0.428815 | 6.2:+3622725 | MS.gene57088:CDS |
| CATGTTGGTGACGCTATCTT+AGG | 0.437122 | 6.2:+3621634 | MS.gene57088:CDS |
| AGGTGATGTTCGTAATAGTT+GGG | 0.441309 | 6.2:+3620923 | MS.gene57088:CDS |
| CGTTGAAGAGGTTGTATTGT+TGG | 0.442142 | 6.2:-3619316 | None:intergenic |
| TACAATAGGCCCAAGAGAAC+AGG | 0.445679 | 6.2:-3619269 | None:intergenic |
| CCATTTGGAGGACACTAATC+AGG | 0.454160 | 6.2:+3619827 | MS.gene57088:CDS |
| CGCTATCTTAGGTGGATTGG+TGG | 0.458715 | 6.2:+3621645 | MS.gene57088:CDS |
| ATTCCTATGAATGATCTGAT+TGG | 0.459502 | 6.2:+3622343 | MS.gene57088:CDS |
| TTCCAGCACTTTCATTGAAA+GGG | 0.464817 | 6.2:-3619415 | None:intergenic |
| ATTCACTCCATTGACAAGCT+TGG | 0.465544 | 6.2:+3619230 | MS.gene57088:CDS |
| CTTCCAGCACTTTCATTGAA+AGG | 0.467301 | 6.2:-3619416 | None:intergenic |
| GGTTGTATTGTTGGTGAAGA+TGG | 0.472509 | 6.2:-3619307 | None:intergenic |
| TAAGGAAGTAATCAAAGTAT+TGG | 0.476469 | 6.2:+3622743 | MS.gene57088:CDS |
| GTCTAATGGCCAAATACAAT+AGG | 0.476494 | 6.2:-3619283 | None:intergenic |
| GACCCTTTCAATGAAAGTGC+TGG | 0.479861 | 6.2:+3619413 | MS.gene57088:CDS |
| GAAAAGAAAAGCATCTATGA+TGG | 0.487650 | 6.2:-3618499 | None:intergenic |
| CTAGTACCACAGAACATAGA+TGG | 0.488409 | 6.2:+3622481 | MS.gene57088:CDS |
| ACTTTATTAGAAGGAATATC+CGG | 0.488477 | 6.2:+3621098 | MS.gene57088:intron |
| AGTCCAATCAGATCATTCAT+AGG | 0.489257 | 6.2:-3622346 | None:intergenic |
| TATTCCTTGTCATGGCATCT+AGG | 0.490057 | 6.2:+3622868 | MS.gene57088:CDS |
| CCATATTCCAAGCTTGTCAA+TGG | 0.491674 | 6.2:-3619237 | None:intergenic |
| TGGATAGTTTCCAAGTGTTA+GGG | 0.492607 | 6.2:-3622443 | None:intergenic |
| ACTTCTGGTGCCCTAACACT+TGG | 0.493264 | 6.2:+3622433 | MS.gene57088:CDS |
| ATGGCAGAGAAGAAGATAAA+GGG | 0.494420 | 6.2:+3622816 | MS.gene57088:CDS |
| ACTAGGTTTCTGAGAAATGA+TGG | 0.495166 | 6.2:-3622463 | None:intergenic |
| AATTGGATTGTCTTTGTTTG+GGG | 0.496370 | 6.2:-3623408 | None:intergenic |
| ACCTTGTCCTTCTGATCCAC+AGG | 0.498358 | 6.2:-3619470 | None:intergenic |
| AGATCTTCATCTTCCAAGTC+CGG | 0.500138 | 6.2:-3621117 | None:intergenic |
| ACCCTAATCCAAAATGAAGA+TGG | 0.502805 | 6.2:+3620888 | MS.gene57088:CDS |
| TCAATGTGTTAGCAGCTGCT+TGG | 0.503391 | 6.2:+3619775 | MS.gene57088:CDS |
| GGCCCAAGAGAACAGGTAAA+CGG | 0.506089 | 6.2:-3619262 | None:intergenic |
| TGAATTGTTTCCCATTGCCC+TGG | 0.506808 | 6.2:-3619755 | None:intergenic |
| CTGTTTGTCCAACGTTGAAG+AGG | 0.509107 | 6.2:-3619328 | None:intergenic |
| AATGAAAGTGCTGGAAGTCA+AGG | 0.509134 | 6.2:+3619422 | MS.gene57088:CDS |
| CCTGATTAGTGTCCTCCAAA+TGG | 0.509333 | 6.2:-3619827 | None:intergenic |
| TTAGAAGGAATATCCGGACT+TGG | 0.511639 | 6.2:+3621104 | MS.gene57088:intron |
| ACAAACAGCTGTAGGAGTTA+GGG | 0.512018 | 6.2:+3619343 | MS.gene57088:CDS |
| CTAGGAATACGAAGATAAAG+TGG | 0.513359 | 6.2:-3623431 | None:intergenic |
| ATTATTGGGGAAGAAATTCA+AGG | 0.514441 | 6.2:+3621600 | MS.gene57088:CDS |
| GTTGTTGAAGCCAGACCCTA+TGG | 0.516727 | 6.2:+3619698 | MS.gene57088:intron |
| GCATACTCTTTGATTAGTGG+TGG | 0.519980 | 6.2:-3621805 | None:intergenic |
| GTGATTGATCGTCACCATCC+AGG | 0.520313 | 6.2:+3623332 | MS.gene57088:CDS |
| AAGACAAAGGAAATTCCAAC+GGG | 0.522014 | 6.2:+3620062 | MS.gene57088:CDS |
| AGTAATCAAAGTATTGGAAG+AGG | 0.523415 | 6.2:+3622749 | MS.gene57088:CDS |
| GCAAGAGCATTAGTGTCTAT+GGG | 0.528313 | 6.2:+3622403 | MS.gene57088:CDS |
| TGACGCTATCTTAGGTGGAT+TGG | 0.529693 | 6.2:+3621642 | MS.gene57088:CDS |
| ATGAATAAAGCAGATAATCA+TGG | 0.533460 | 6.2:+3621670 | MS.gene57088:CDS |
| TGCAAATCCTATTGATGACA+AGG | 0.535889 | 6.2:-3622383 | None:intergenic |
| TATCCATATAGAACTGCTGA+TGG | 0.540566 | 6.2:+3619380 | MS.gene57088:CDS |
| TTCATGGAAATCTTTATGGA+AGG | 0.547176 | 6.2:-3618460 | None:intergenic |
| TATTCTTCCTGTGGATCAGA+AGG | 0.548821 | 6.2:+3619463 | MS.gene57088:CDS |
| CAATACAACCTCTTCAACGT+TGG | 0.548944 | 6.2:+3619320 | MS.gene57088:CDS |
| TGCTGTTTGTGATGCTCTCA+AGG | 0.550296 | 6.2:+3620989 | MS.gene57088:CDS |
| TTGGTGAAGATGGCGTCTAA+TGG | 0.550915 | 6.2:-3619297 | None:intergenic |
| AGTGTGAGGACTTTCAAAGA+TGG | 0.553993 | 6.2:+3620840 | MS.gene57088:CDS |
| GGTTTCTATGAGATCAAGAC+TGG | 0.556307 | 6.2:+3620083 | MS.gene57088:CDS |
| AATGATCTGATTGGACTACC+AGG | 0.562984 | 6.2:+3622352 | MS.gene57088:CDS |
| ACTTTGCTTGCAGGCATGCG+TGG | 0.565616 | 6.2:+3621225 | MS.gene57088:CDS |
| GTGTGAGGACTTTCAAAGAT+GGG | 0.567956 | 6.2:+3620841 | MS.gene57088:CDS |
| AGAGATATATCTGCCACCCC+AGG | 0.569935 | 6.2:+3621769 | MS.gene57088:CDS |
| ATTCAAGTTCTTGAAGACAA+AGG | 0.574896 | 6.2:+3620049 | MS.gene57088:CDS |
| ATTCTTACCACCAAGGTGTA+CGG | 0.577040 | 6.2:-3620118 | None:intergenic |
| TGATTGGATAGACCATTTGG+AGG | 0.577305 | 6.2:+3619815 | MS.gene57088:CDS |
| AAGGACACGTTTGGACATGT+TGG | 0.577672 | 6.2:+3621619 | MS.gene57088:CDS |
| TGGAAGAAATATTCTTCCTG+TGG | 0.579019 | 6.2:+3619454 | MS.gene57088:CDS |
| GTTGGTGACGCTATCTTAGG+TGG | 0.581025 | 6.2:+3621637 | MS.gene57088:CDS |
| CAGTTTATAGGGATAGAGAG+AGG | 0.581334 | 6.2:+3622643 | MS.gene57088:intron |
| GATGTTCGTAATAGTTGGGC+TGG | 0.581972 | 6.2:+3620927 | MS.gene57088:CDS |
| TTGATCTCATAGAAACCCGT+TGG | 0.589718 | 6.2:-3620077 | None:intergenic |
| TCTGTGCCATCTATGTTCTG+TGG | 0.595744 | 6.2:-3622487 | None:intergenic |
| CATTGGCTTGCAACTTCACG+TGG | 0.599180 | 6.2:-3620014 | None:intergenic |
| CAAACATCCGTACACCTTGG+TGG | 0.599441 | 6.2:+3620111 | MS.gene57088:CDS |
| TATTTAGGTATGGATTATTG+GGG | 0.600656 | 6.2:+3621587 | MS.gene57088:intron |
| GGTATATGGCAATGATGTTG+AGG | 0.601911 | 6.2:+3622770 | MS.gene57088:CDS |
| TGATACACTAGTGGGTCTCA+TGG | 0.602913 | 6.2:+3622797 | MS.gene57088:CDS |
| GAAGACAAAGGAAATTCCAA+CGG | 0.603567 | 6.2:+3620061 | MS.gene57088:CDS |
| CACAGAAAGATCTGATCATG+TGG | 0.608280 | 6.2:+3622504 | MS.gene57088:CDS |
| ATGAAAGTGCTGGAAGTCAA+GGG | 0.608733 | 6.2:+3619423 | MS.gene57088:CDS |
| GAGGAGCTTGATACACTAGT+GGG | 0.609778 | 6.2:+3622789 | MS.gene57088:CDS |
| ATGCAAACATCCGTACACCT+TGG | 0.610700 | 6.2:+3620108 | MS.gene57088:CDS |
| ATCCAGGAATGACAGAAAAG+TGG | 0.610750 | 6.2:+3623348 | MS.gene57088:CDS |
| GCTATCTTAGGTGGATTGGT+GGG | 0.616010 | 6.2:+3621646 | MS.gene57088:CDS |
| TGCACTTTGAAGGAGGCTAG+AGG | 0.616682 | 6.2:+3623220 | MS.gene57088:intron |
| TCAAATGCAAAGAATCAGGT+AGG | 0.617720 | 6.2:-3621747 | None:intergenic |
| CTGAAGTCACCAATCTAGCA+TGG | 0.617787 | 6.2:-3621146 | None:intergenic |
| GAAGCCAGACCCTATGGTGG+TGG | 0.622175 | 6.2:+3619704 | MS.gene57088:CDS |
| ATTGGATTGTCTTTGTTTGG+GGG | 0.624854 | 6.2:-3623407 | None:intergenic |
| TTTCACAAGCAACTTCAATG+AGG | 0.625396 | 6.2:+3623253 | MS.gene57088:CDS |
| TCCTGTGGATCAGAAGGACA+AGG | 0.625807 | 6.2:+3619469 | MS.gene57088:CDS |
| TTTACCTAGATGCCATGACA+AGG | 0.626815 | 6.2:-3622872 | None:intergenic |
| TGAGGAGCTTGATACACTAG+TGG | 0.630078 | 6.2:+3622788 | MS.gene57088:CDS |
| AACGTTGGACAAACAGCTGT+AGG | 0.633142 | 6.2:+3619335 | MS.gene57088:CDS |
| GGAAAATATTCTTACCACCA+AGG | 0.641196 | 6.2:-3620125 | None:intergenic |
| AAGATCTGATCATGTGGACA+TGG | 0.657118 | 6.2:+3622510 | MS.gene57088:CDS |
| GTTGAAGCCAGACCCTATGG+TGG | 0.716852 | 6.2:+3619701 | MS.gene57088:CDS |
| TCACACTATAGATTGGACTG+TGG | 0.742224 | 6.2:+3621185 | MS.gene57088:CDS |
| AAGTCACCAATCTAGCATGG+CGG | 0.759736 | 6.2:-3621143 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATGAAATTAAATAAATAA+AGG | + | chr6.2:3622155-3622174 | MS.gene57088:intron | 10.0% |
| !!! | CAAAAAAATTGATTTTATTT+AGG | + | chr6.2:3621572-3621591 | MS.gene57088:intron | 10.0% |
| !!! | TTTAATTTGTTAAAAAATGA+AGG | - | chr6.2:3620576-3620595 | None:intergenic | 10.0% |
| !! | AAATATCTCAAATATTATGA+AGG | - | chr6.2:3622938-3622957 | None:intergenic | 15.0% |
| !! | AATTACTAAACAAAATTAGA+TGG | - | chr6.2:3620695-3620714 | None:intergenic | 15.0% |
| !! | ATAAAATAATTATACACGAA+CGG | - | chr6.2:3621324-3621343 | None:intergenic | 15.0% |
| !! | ATCAACTTTAAATAATATGA+TGG | + | chr6.2:3619864-3619883 | MS.gene57088:intron | 15.0% |
| !! | ATTATATATATGTCACTATA+GGG | - | chr6.2:3618909-3618928 | None:intergenic | 15.0% |
| !! | ATTTAATTAGTATACTTTGT+AGG | - | chr6.2:3621452-3621471 | None:intergenic | 15.0% |
| !! | CTTAATAATAAACATACATA+GGG | + | chr6.2:3618571-3618590 | MS.gene57088:intron | 15.0% |
| !! | TGTATATTAGTAGAAAAATA+TGG | - | chr6.2:3621918-3621937 | None:intergenic | 15.0% |
| !! | TTACTATACTTATATTGTTT+AGG | - | chr6.2:3621517-3621536 | None:intergenic | 15.0% |
| !!! | AAAATTGCAAATTTTCAAAT+GGG | - | chr6.2:3621878-3621897 | None:intergenic | 15.0% |
| !!! | AAATCAATTTTTTTGAAACA+TGG | - | chr6.2:3621567-3621586 | None:intergenic | 15.0% |
| !!! | AAATTGATTTTATTTAGGTA+TGG | + | chr6.2:3621577-3621596 | MS.gene57088:intron | 15.0% |
| !!! | AATAAATAAAGGTATAATAG+CGG | + | chr6.2:3622166-3622185 | MS.gene57088:intron | 15.0% |
| !!! | ATAAGTTTTTTTACACTTTT+AGG | + | chr6.2:3618632-3618651 | MS.gene57088:intron | 15.0% |
| !!! | CTAAAAAATGTTATATCTTT+TGG | + | chr6.2:3622309-3622328 | MS.gene57088:intron | 15.0% |
| !!! | CTATATGAAATTCTTTTTAA+TGG | + | chr6.2:3619195-3619214 | MS.gene57088:intron | 15.0% |
| !!! | TAAGTTTTTTTACACTTTTA+GGG | + | chr6.2:3618633-3618652 | MS.gene57088:intron | 15.0% |
| !!! | TATAGTCTTAAAAAGTTTTA+GGG | - | chr6.2:3619655-3619674 | None:intergenic | 15.0% |
| !!! | TCTTGTTTTATATGATTTTT+GGG | + | chr6.2:3620375-3620394 | MS.gene57088:intron | 15.0% |
| !!! | TTCTTGTTTTATATGATTTT+TGG | + | chr6.2:3620374-3620393 | MS.gene57088:intron | 15.0% |
| !!! | TTTTATTGTACTTTATTAGA+AGG | + | chr6.2:3621089-3621108 | MS.gene57088:intron | 15.0% |
| !!! | TTTTCAAAAAATAAAAAGTG+TGG | + | chr6.2:3619608-3619627 | MS.gene57088:intron | 15.0% |
| !! | AACTTTAAATAATATGATGG+TGG | + | chr6.2:3619867-3619886 | MS.gene57088:intron | 20.0% |
| !! | AAGTTAAAAATATCAAAGGA+TGG | + | chr6.2:3620864-3620883 | MS.gene57088:CDS | 20.0% |
| !! | AATAAATGATGCAGTTTATA+GGG | + | chr6.2:3622632-3622651 | MS.gene57088:intron | 20.0% |
| !! | AATAAGTTATTTATCCAAGT+AGG | + | chr6.2:3618855-3618874 | MS.gene57088:intron | 20.0% |
| !! | AATTTCATATAGTTAGTTAG+AGG | - | chr6.2:3619187-3619206 | None:intergenic | 20.0% |
| !! | ACTTTAGTTAAGAGAATATT+TGG | + | chr6.2:3619545-3619564 | MS.gene57088:intron | 20.0% |
| !! | ATTGATACCTATTTCAAAAT+GGG | + | chr6.2:3622704-3622723 | MS.gene57088:CDS | 20.0% |
| !! | ATTGTAACAAGATTTCTAAT+GGG | - | chr6.2:3618426-3618445 | None:intergenic | 20.0% |
| !! | ATTGTGTTCTTGAATAAAAA+GGG | - | chr6.2:3620970-3620989 | None:intergenic | 20.0% |
| !! | CATGAAACTATATGATAAAA+GGG | + | chr6.2:3620776-3620795 | MS.gene57088:intron | 20.0% |
| !! | CCTATGTATGTTTATTATTA+AGG | - | chr6.2:3618573-3618592 | None:intergenic | 20.0% |
| !! | CCTTAATAATAAACATACAT+AGG | + | chr6.2:3618570-3618589 | MS.gene57088:intron | 20.0% |
| !! | CTAGTAAAATAAACACATTA+TGG | + | chr6.2:3623180-3623199 | MS.gene57088:intron | 20.0% |
| !! | GATTATATATATGTCACTAT+AGG | - | chr6.2:3618910-3618929 | None:intergenic | 20.0% |
| !! | TAATAAATGATGCAGTTTAT+AGG | + | chr6.2:3622631-3622650 | MS.gene57088:intron | 20.0% |
| !! | TATTGATACCTATTTCAAAA+TGG | + | chr6.2:3622703-3622722 | MS.gene57088:CDS | 20.0% |
| !! | TATTGTAACAAGATTTCTAA+TGG | - | chr6.2:3618427-3618446 | None:intergenic | 20.0% |
| !! | TCAATTAATGCTTATGTATA+TGG | - | chr6.2:3620149-3620168 | None:intergenic | 20.0% |
| !! | TGTATGTTTATTATTAAGGA+AGG | - | chr6.2:3618569-3618588 | None:intergenic | 20.0% |
| !! | TTCAATTTATGATACATGAT+TGG | + | chr6.2:3619799-3619818 | MS.gene57088:CDS | 20.0% |
| !! | TTCTATATGGATAATCATTA+GGG | - | chr6.2:3619373-3619392 | None:intergenic | 20.0% |
| !!! | AATGTTGTTTTTATGTATCT+AGG | + | chr6.2:3620668-3620687 | MS.gene57088:intron | 20.0% |
| !!! | ACTCAATTTTGCTAAAATAA+TGG | - | chr6.2:3618885-3618904 | None:intergenic | 20.0% |
| !!! | ACTTTTTAAGACTATACAAT+TGG | + | chr6.2:3619659-3619678 | MS.gene57088:intron | 20.0% |
| !!! | CAAAATTGCAAATTTTCAAA+TGG | - | chr6.2:3621879-3621898 | None:intergenic | 20.0% |
| !!! | CAGTTTTAAAAATCAAACAT+TGG | + | chr6.2:3620526-3620545 | MS.gene57088:intron | 20.0% |
| !!! | CTTGTTTTATATGATTTTTG+GGG | + | chr6.2:3620376-3620395 | MS.gene57088:intron | 20.0% |
| !!! | GTATAGTCTTAAAAAGTTTT+AGG | - | chr6.2:3619656-3619675 | None:intergenic | 20.0% |
| !!! | TAATTTTTATACAGTTCTCA+AGG | + | chr6.2:3623106-3623125 | MS.gene57088:intron | 20.0% |
| !!! | TATATCTTTTGGTATTATAC+AGG | + | chr6.2:3622320-3622339 | MS.gene57088:intron | 20.0% |
| !!! | TGATTTTTAAAACTGTTTCA+GGG | - | chr6.2:3620521-3620540 | None:intergenic | 20.0% |
| !!! | TTAATTTGATGCATATAGTT+AGG | - | chr6.2:3621025-3621044 | None:intergenic | 20.0% |
| !!! | TTATTTAGGTATGGATTATT+GGG | + | chr6.2:3621586-3621605 | MS.gene57088:intron | 20.0% |
| !!! | TTGATTTTTAAAACTGTTTC+AGG | - | chr6.2:3620522-3620541 | None:intergenic | 20.0% |
| !!! | TTGTTTTATATGATTTTTGG+GGG | + | chr6.2:3620377-3620396 | MS.gene57088:intron | 20.0% |
| !!! | TTTATTTAGGTATGGATTAT+TGG | + | chr6.2:3621585-3621604 | MS.gene57088:intron | 20.0% |
| !!! | TTTTTCATCATAAGCTATTT+TGG | - | chr6.2:3618727-3618746 | None:intergenic | 20.0% |
| ! | AAACTATATGATAAAAGGGA+TGG | + | chr6.2:3620780-3620799 | MS.gene57088:intron | 25.0% |
| ! | AAACTCGAAAAATTAACTAG+AGG | - | chr6.2:3621289-3621308 | None:intergenic | 25.0% |
| ! | AAATATGGTCAAAGTAAGTT+AGG | - | chr6.2:3621903-3621922 | None:intergenic | 25.0% |
| ! | AACTCGAAAAATTAACTAGA+GGG | - | chr6.2:3621288-3621307 | None:intergenic | 25.0% |
| ! | ACCTTTATTAACTGTATTAG+TGG | + | chr6.2:3622120-3622139 | MS.gene57088:intron | 25.0% |
| ! | ACTTTATTAGAAGGAATATC+CGG | + | chr6.2:3621098-3621117 | MS.gene57088:intron | 25.0% |
| ! | ACTTTGTAAACTCAAGATAA+AGG | - | chr6.2:3620604-3620623 | None:intergenic | 25.0% |
| ! | ATAATAATGCTCTTCTGAAT+TGG | - | chr6.2:3622686-3622705 | None:intergenic | 25.0% |
| ! | ATATGTTTATCTTCATTCTG+CGG | + | chr6.2:3619010-3619029 | MS.gene57088:intron | 25.0% |
| ! | ATCCATATATGATTGAAGAA+TGG | + | chr6.2:3620177-3620196 | MS.gene57088:intron | 25.0% |
| ! | ATGAATAAAGCAGATAATCA+TGG | + | chr6.2:3621670-3621689 | MS.gene57088:CDS | 25.0% |
| ! | CATTGTGTTCTTGAATAAAA+AGG | - | chr6.2:3620971-3620990 | None:intergenic | 25.0% |
| ! | CTTTGTAAACTCAAGATAAA+GGG | - | chr6.2:3620603-3620622 | None:intergenic | 25.0% |
| ! | GCATGAAACTATATGATAAA+AGG | + | chr6.2:3620775-3620794 | MS.gene57088:intron | 25.0% |
| ! | GTTCTATATGGATAATCATT+AGG | - | chr6.2:3619374-3619393 | None:intergenic | 25.0% |
| ! | TAAGGAAGTAATCAAAGTAT+TGG | + | chr6.2:3622743-3622762 | MS.gene57088:CDS | 25.0% |
| ! | TATATAATCACAAGTCATGT+AGG | + | chr6.2:3618921-3618940 | MS.gene57088:intron | 25.0% |
| ! | TCCACTAATACAGTTAATAA+AGG | - | chr6.2:3622124-3622143 | None:intergenic | 25.0% |
| ! | TGGGAAGTTAAAAATATCAA+AGG | + | chr6.2:3620860-3620879 | MS.gene57088:CDS | 25.0% |
| ! | TGTTTATTATTAAGGAAGGA+AGG | - | chr6.2:3618565-3618584 | None:intergenic | 25.0% |
| ! | TTAAGCTCAAAATTATGCAT+TGG | + | chr6.2:3622039-3622058 | MS.gene57088:intron | 25.0% |
| ! | TTCCATTCTTCAATCATATA+TGG | - | chr6.2:3620182-3620201 | None:intergenic | 25.0% |
| !! | AAGAACTTGAATGATTTTAG+TGG | - | chr6.2:3620041-3620060 | None:intergenic | 25.0% |
| !! | AGTTAATGACCATTTTACAA+CGG | + | chr6.2:3620224-3620243 | MS.gene57088:intron | 25.0% |
| !! | ATGCACAAAGTATTATACTA+GGG | + | chr6.2:3623142-3623161 | MS.gene57088:intron | 25.0% |
| !! | ATGTTGGTGCAAAAATATTT+TGG | - | chr6.2:3621830-3621849 | None:intergenic | 25.0% |
| !! | TATTTAGGTATGGATTATTG+GGG | + | chr6.2:3621587-3621606 | MS.gene57088:intron | 25.0% |
| !! | TTTTGTAATATTCCTTGTCA+TGG | + | chr6.2:3622860-3622879 | MS.gene57088:CDS | 25.0% |
| !!! | AAATCTTCCCATTTTGAAAT+AGG | - | chr6.2:3622714-3622733 | None:intergenic | 25.0% |
| !!! | TTCCTATTGATTTGAAACTA+TGG | + | chr6.2:3620632-3620651 | MS.gene57088:intron | 25.0% |
| AAAATAATGGTATGCCTACT+TGG | - | chr6.2:3618872-3618891 | None:intergenic | 30.0% | |
| AAAATCAAACATTGGACAAC+TGG | + | chr6.2:3620534-3620553 | MS.gene57088:intron | 30.0% | |
| AAGAATTTGTCAGTGTCTAT+AGG | + | chr6.2:3621713-3621732 | MS.gene57088:CDS | 30.0% | |
| AATTCTTCAGTTAGAGAGTA+TGG | - | chr6.2:3621700-3621719 | None:intergenic | 30.0% | |
| ATACGAAGATAAAGTGGAAT+TGG | - | chr6.2:3623428-3623447 | None:intergenic | 30.0% | |
| ATCGACAACCAATTATCTTA+GGG | - | chr6.2:3623051-3623070 | None:intergenic | 30.0% | |
| ATTATTGGGGAAGAAATTCA+AGG | + | chr6.2:3621600-3621619 | MS.gene57088:CDS | 30.0% | |
| ATTCCTATGAATGATCTGAT+TGG | + | chr6.2:3622343-3622362 | MS.gene57088:CDS | 30.0% | |
| CAAAGATTCACACTATAGAT+TGG | + | chr6.2:3621178-3621197 | MS.gene57088:CDS | 30.0% | |
| CTACTTCATGGAAATCTTTA+TGG | - | chr6.2:3618467-3618486 | None:intergenic | 30.0% | |
| GAAAAAACCTTGTCATCAAT+AGG | + | chr6.2:3622376-3622395 | MS.gene57088:CDS | 30.0% | |
| GAACACAACTGAAAGTTTAA+AGG | + | chr6.2:3623307-3623326 | MS.gene57088:CDS | 30.0% | |
| GATTAATTACACATGTAGCA+AGG | - | chr6.2:3619064-3619083 | None:intergenic | 30.0% | |
| TACAGTTCTCAAGGAATATT+AGG | + | chr6.2:3623115-3623134 | MS.gene57088:intron | 30.0% | |
| TAGAATTCCCCTAAGATAAT+TGG | + | chr6.2:3623040-3623059 | MS.gene57088:intron | 30.0% | |
| TCAACTGAGTCATGTATTAT+GGG | + | chr6.2:3622076-3622095 | MS.gene57088:intron | 30.0% | |
| TCTTCTGAATTGGTTATATC+TGG | - | chr6.2:3622676-3622695 | None:intergenic | 30.0% | |
| TGCCATAGTTTCAAATCAAT+AGG | - | chr6.2:3620637-3620656 | None:intergenic | 30.0% | |
| TTCATGGAAATCTTTATGGA+AGG | - | chr6.2:3618463-3618482 | None:intergenic | 30.0% | |
| ! | AATTGGATTGTCTTTGTTTG+GGG | - | chr6.2:3623411-3623430 | None:intergenic | 30.0% |
| ! | ACATTTTCTTCACTACTTCA+TGG | - | chr6.2:3618479-3618498 | None:intergenic | 30.0% |
| ! | AGTGTGGACTAAAAATGTTA+AGG | + | chr6.2:3619624-3619643 | MS.gene57088:intron | 30.0% |
| ! | ATTCAAGTTCTTGAAGACAA+AGG | + | chr6.2:3620049-3620068 | MS.gene57088:CDS | 30.0% |
| ! | CAGCATAGGACAAATTTTTA+TGG | + | chr6.2:3620340-3620359 | MS.gene57088:intron | 30.0% |
| ! | CATGCACAAAGTATTATACT+AGG | + | chr6.2:3623141-3623160 | MS.gene57088:intron | 30.0% |
| ! | GAATTGGATTGTCTTTGTTT+GGG | - | chr6.2:3623412-3623431 | None:intergenic | 30.0% |
| ! | TCCATCTTCATTTTGGATTA+GGG | - | chr6.2:3620892-3620911 | None:intergenic | 30.0% |
| ! | TTTTCTCTCCAAAAGTTTTG+TGG | - | chr6.2:3619730-3619749 | None:intergenic | 30.0% |
| !! | AAAGTATTGGAAGAGGTATA+TGG | + | chr6.2:3622756-3622775 | MS.gene57088:CDS | 30.0% |
| !! | AGTAATCAAAGTATTGGAAG+AGG | + | chr6.2:3622749-3622768 | MS.gene57088:CDS | 30.0% |
| !! | GAAAAGAAAAGCATCTATGA+TGG | - | chr6.2:3618502-3618521 | None:intergenic | 30.0% |
| !! | GGATAATATAGTTGAGTTGA+TGG | - | chr6.2:3618544-3618563 | None:intergenic | 30.0% |
| !! | GTTTTAGACAACTTATACGT+GGG | + | chr6.2:3620417-3620436 | MS.gene57088:intron | 30.0% |
| !! | TAATATAGTTGAGTTGATGG+AGG | - | chr6.2:3618541-3618560 | None:intergenic | 30.0% |
| !! | TGAATGATTTTAGTGGACAT+TGG | - | chr6.2:3620034-3620053 | None:intergenic | 30.0% |
| !! | TGTTTTAGACAACTTATACG+TGG | + | chr6.2:3620416-3620435 | MS.gene57088:intron | 30.0% |
| !!! | AAGTGGCAATTATTTTGAGA+CGG | + | chr6.2:3622221-3622240 | MS.gene57088:intron | 30.0% |
| AAGAAATTCAAGGACACGTT+TGG | + | chr6.2:3621610-3621629 | MS.gene57088:CDS | 35.0% | |
| AAGACAAAGGAAATTCCAAC+GGG | + | chr6.2:3620062-3620081 | MS.gene57088:CDS | 35.0% | |
| ACATGATTGGATAGACCATT+TGG | + | chr6.2:3619812-3619831 | MS.gene57088:CDS | 35.0% | |
| ACCCTAATCCAAAATGAAGA+TGG | + | chr6.2:3620888-3620907 | MS.gene57088:CDS | 35.0% | |
| AGGTGATGTTCGTAATAGTT+GGG | + | chr6.2:3620923-3620942 | MS.gene57088:CDS | 35.0% | |
| AGTCCAATCAGATCATTCAT+AGG | - | chr6.2:3622349-3622368 | None:intergenic | 35.0% | |
| ATATAGATATTTGCGTGTCC+TGG | + | chr6.2:3623008-3623027 | MS.gene57088:intron | 35.0% | |
| ATGGATAGTTTCCAAGTGTT+AGG | - | chr6.2:3622447-3622466 | None:intergenic | 35.0% | |
| ATGGCAGAGAAGAAGATAAA+GGG | + | chr6.2:3622816-3622835 | MS.gene57088:CDS | 35.0% | |
| CAAAAAGTTGTGTTGTGGTT+TGG | + | chr6.2:3620441-3620460 | MS.gene57088:intron | 35.0% | |
| CATCGACAACCAATTATCTT+AGG | - | chr6.2:3623052-3623071 | None:intergenic | 35.0% | |
| CTAGGAATACGAAGATAAAG+TGG | - | chr6.2:3623434-3623453 | None:intergenic | 35.0% | |
| GAAGACAAAGGAAATTCCAA+CGG | + | chr6.2:3620061-3620080 | MS.gene57088:CDS | 35.0% | |
| GGAAAATATTCTTACCACCA+AGG | - | chr6.2:3620128-3620147 | None:intergenic | 35.0% | |
| GGAAGATTTGACAGATGATA+AGG | + | chr6.2:3622725-3622744 | MS.gene57088:CDS | 35.0% | |
| GGAATTGGATTGTCTTTGTT+TGG | - | chr6.2:3623413-3623432 | None:intergenic | 35.0% | |
| GTCAACTGAGTCATGTATTA+TGG | + | chr6.2:3622075-3622094 | MS.gene57088:intron | 35.0% | |
| GTCTAATGGCCAAATACAAT+AGG | - | chr6.2:3619286-3619305 | None:intergenic | 35.0% | |
| TATCCATATAGAACTGCTGA+TGG | + | chr6.2:3619380-3619399 | MS.gene57088:CDS | 35.0% | |
| TCAAATGCAAAGAATCAGGT+AGG | - | chr6.2:3621750-3621769 | None:intergenic | 35.0% | |
| TCATTGAGACCGTTGTAAAA+TGG | - | chr6.2:3620236-3620255 | None:intergenic | 35.0% | |
| TCGACAACCAATTATCTTAG+GGG | - | chr6.2:3623050-3623069 | None:intergenic | 35.0% | |
| TCTCTCAAATGCAAAGAATC+AGG | - | chr6.2:3621754-3621773 | None:intergenic | 35.0% | |
| TGAACTTTCATGCACTTTGA+AGG | + | chr6.2:3623210-3623229 | MS.gene57088:intron | 35.0% | |
| TGGAAGAAATATTCTTCCTG+TGG | + | chr6.2:3619454-3619473 | MS.gene57088:CDS | 35.0% | |
| TGGATAGTTTCCAAGTGTTA+GGG | - | chr6.2:3622446-3622465 | None:intergenic | 35.0% | |
| TTCAAATGGGTCATCTATTG+CGG | - | chr6.2:3621865-3621884 | None:intergenic | 35.0% | |
| TTCAAGTGCTTTCTCTGTTT+GGG | + | chr6.2:3623379-3623398 | MS.gene57088:CDS | 35.0% | |
| TTCCAGCACTTTCATTGAAA+GGG | - | chr6.2:3619418-3619437 | None:intergenic | 35.0% | |
| TTGGAGAGAAAAACATTCCA+GGG | + | chr6.2:3619738-3619757 | MS.gene57088:CDS | 35.0% | |
| TTGGCATACTCTTTGATTAG+TGG | - | chr6.2:3621811-3621830 | None:intergenic | 35.0% | |
| TTTCACAAGCAACTTCAATG+AGG | + | chr6.2:3623253-3623272 | MS.gene57088:CDS | 35.0% | |
| TTTCCATCAGCAGTTCTATA+TGG | - | chr6.2:3619386-3619405 | None:intergenic | 35.0% | |
| TTTGGAGAGAAAAACATTCC+AGG | + | chr6.2:3619737-3619756 | MS.gene57088:CDS | 35.0% | |
| ! | ACTAGGTTTCTGAGAAATGA+TGG | - | chr6.2:3622466-3622485 | None:intergenic | 35.0% |
| ! | ATGCATTGGTATGCGTAATA+GGG | + | chr6.2:3622053-3622072 | MS.gene57088:intron | 35.0% |
| ! | ATTGGATTGTCTTTGTTTGG+GGG | - | chr6.2:3623410-3623429 | None:intergenic | 35.0% |
| ! | CTCCATCTTCATTTTGGATT+AGG | - | chr6.2:3620893-3620912 | None:intergenic | 35.0% |
| ! | GCTGCATTGATATTACAAAG+TGG | + | chr6.2:3622204-3622223 | MS.gene57088:intron | 35.0% |
| ! | TATGCATTGGTATGCGTAAT+AGG | + | chr6.2:3622052-3622071 | MS.gene57088:intron | 35.0% |
| ! | TTGCTACTCCATCTTCATTT+TGG | - | chr6.2:3620899-3620918 | None:intergenic | 35.0% |
| ! | TTTAAAACTGTTTCAGGGAC+AGG | - | chr6.2:3620516-3620535 | None:intergenic | 35.0% |
| !! | CAAGCAAAGTGTCAGTTTTA+AGG | - | chr6.2:3621215-3621234 | None:intergenic | 35.0% |
| !!! | AAGAAGTTTTGAACAGTGTG+AGG | + | chr6.2:3620826-3620845 | MS.gene57088:CDS | 35.0% |
| AAAACTGACACTTTGCTTGC+AGG | + | chr6.2:3621216-3621235 | MS.gene57088:CDS | 40.0% | |
| AACACAAGGCATAACAGCAT+AGG | + | chr6.2:3620326-3620345 | MS.gene57088:intron | 40.0% | |
| AAGATCTGATCATGTGGACA+TGG | + | chr6.2:3622510-3622529 | MS.gene57088:CDS | 40.0% | |
| AATGATCTGATTGGACTACC+AGG | + | chr6.2:3622352-3622371 | MS.gene57088:CDS | 40.0% | |
| ACAAACAGCTGTAGGAGTTA+GGG | + | chr6.2:3619343-3619362 | MS.gene57088:CDS | 40.0% | |
| ACAACGGTCTCAATGAGATT+TGG | + | chr6.2:3620240-3620259 | MS.gene57088:intron | 40.0% | |
| ACACCAAAAAGGGTTTGCAA+TGG | + | chr6.2:3623282-3623301 | MS.gene57088:CDS | 40.0% | |
| AGAAAAACATTCCAGGGCAA+TGG | + | chr6.2:3619744-3619763 | MS.gene57088:CDS | 40.0% | |
| AGATCTTCATCTTCCAAGTC+CGG | - | chr6.2:3621120-3621139 | None:intergenic | 40.0% | |
| AGTGTGAGGACTTTCAAAGA+TGG | + | chr6.2:3620840-3620859 | MS.gene57088:CDS | 40.0% | |
| ATCCAGGAATGACAGAAAAG+TGG | + | chr6.2:3623348-3623367 | MS.gene57088:CDS | 40.0% | |
| ATTCACTCCATTGACAAGCT+TGG | + | chr6.2:3619230-3619249 | MS.gene57088:CDS | 40.0% | |
| ATTCTTACCACCAAGGTGTA+CGG | - | chr6.2:3620121-3620140 | None:intergenic | 40.0% | |
| CAATACAACCTCTTCAACGT+TGG | + | chr6.2:3619320-3619339 | MS.gene57088:CDS | 40.0% | |
| CACAGAAAGATCTGATCATG+TGG | + | chr6.2:3622504-3622523 | MS.gene57088:CDS | 40.0% | |
| CACCAAAAAGGGTTTGCAAT+GGG | + | chr6.2:3623283-3623302 | MS.gene57088:CDS | 40.0% | |
| CAGGTGATGTTCGTAATAGT+TGG | + | chr6.2:3620922-3620941 | MS.gene57088:CDS | 40.0% | |
| CAGTTTATAGGGATAGAGAG+AGG | + | chr6.2:3622643-3622662 | MS.gene57088:intron | 40.0% | |
| CATCTATGTTCTGTGGTACT+AGG | - | chr6.2:3622483-3622502 | None:intergenic | 40.0% | |
| CATGGCAGAGAAGAAGATAA+AGG | + | chr6.2:3622815-3622834 | MS.gene57088:CDS | 40.0% | |
| CCATATTCCAAGCTTGTCAA+TGG | - | chr6.2:3619240-3619259 | None:intergenic | 40.0% | |
| CCATTGACAAGCTTGGAATA+TGG | + | chr6.2:3619237-3619256 | MS.gene57088:CDS | 40.0% | |
| CGTTGAAGAGGTTGTATTGT+TGG | - | chr6.2:3619319-3619338 | None:intergenic | 40.0% | |
| CTAGTACCACAGAACATAGA+TGG | + | chr6.2:3622481-3622500 | MS.gene57088:CDS | 40.0% | |
| CTGAGTCATGTATTATGGGA+CGG | + | chr6.2:3622080-3622099 | MS.gene57088:intron | 40.0% | |
| CTTCAAGTGCTTTCTCTGTT+TGG | + | chr6.2:3623378-3623397 | MS.gene57088:CDS | 40.0% | |
| CTTCCAGCACTTTCATTGAA+AGG | - | chr6.2:3619419-3619438 | None:intergenic | 40.0% | |
| GAAAAACATTCCAGGGCAAT+GGG | + | chr6.2:3619745-3619764 | MS.gene57088:CDS | 40.0% | |
| GAAGATGGAGTAGCAATTTC+AGG | + | chr6.2:3620903-3620922 | MS.gene57088:CDS | 40.0% | |
| GAGATTTGGACTTGTGTGTT+TGG | + | chr6.2:3620254-3620273 | MS.gene57088:intron | 40.0% | |
| GAGGAGACATACACCAAAAA+GGG | + | chr6.2:3623272-3623291 | MS.gene57088:CDS | 40.0% | |
| GCATACTCTTTGATTAGTGG+TGG | - | chr6.2:3621808-3621827 | None:intergenic | 40.0% | |
| GGTATATGGCAATGATGTTG+AGG | + | chr6.2:3622770-3622789 | MS.gene57088:CDS | 40.0% | |
| GGTTTCTATGAGATCAAGAC+TGG | + | chr6.2:3620083-3620102 | MS.gene57088:CDS | 40.0% | |
| GTGTGAGGACTTTCAAAGAT+GGG | + | chr6.2:3620841-3620860 | MS.gene57088:CDS | 40.0% | |
| TATTCCTTGTCATGGCATCT+AGG | + | chr6.2:3622868-3622887 | MS.gene57088:CDS | 40.0% | |
| TATTCTTCCTGTGGATCAGA+AGG | + | chr6.2:3619463-3619482 | MS.gene57088:CDS | 40.0% | |
| TCAAATGGGTCATCTATTGC+GGG | - | chr6.2:3621864-3621883 | None:intergenic | 40.0% | |
| TCACACTATAGATTGGACTG+TGG | + | chr6.2:3621185-3621204 | MS.gene57088:CDS | 40.0% | |
| TCTATGGGTCATCAAACTTC+TGG | + | chr6.2:3622418-3622437 | MS.gene57088:CDS | 40.0% | |
| TCTCTTGGGCCTATTGTATT+TGG | + | chr6.2:3619274-3619293 | MS.gene57088:CDS | 40.0% | |
| TGAGGAGACATACACCAAAA+AGG | + | chr6.2:3623271-3623290 | MS.gene57088:CDS | 40.0% | |
| TGATTGGATAGACCATTTGG+AGG | + | chr6.2:3619815-3619834 | MS.gene57088:CDS | 40.0% | |
| TGGGACAAAAAGTTGTGTTG+TGG | + | chr6.2:3620436-3620455 | MS.gene57088:intron | 40.0% | |
| TTAGAAGGAATATCCGGACT+TGG | + | chr6.2:3621104-3621123 | MS.gene57088:intron | 40.0% | |
| TTGATCTCATAGAAACCCGT+TGG | - | chr6.2:3620080-3620099 | None:intergenic | 40.0% | |
| TTTACCTAGATGCCATGACA+AGG | - | chr6.2:3622875-3622894 | None:intergenic | 40.0% | |
| ! | ACTTTCATGCACTTTGAAGG+AGG | + | chr6.2:3623213-3623232 | MS.gene57088:intron | 40.0% |
| ! | ACTTTTCTGTCATTCCTGGA+TGG | - | chr6.2:3623349-3623368 | None:intergenic | 40.0% |
| ! | AGGGATGGAAGTGTGATATA+TGG | + | chr6.2:3620795-3620814 | MS.gene57088:intron | 40.0% |
| ! | GGTTGTATTGTTGGTGAAGA+TGG | - | chr6.2:3619310-3619329 | None:intergenic | 40.0% |
| !! | AACCACTTTTCTGTCATTCC+TGG | - | chr6.2:3623353-3623372 | None:intergenic | 40.0% |
| !! | AATGAAAGTGCTGGAAGTCA+AGG | + | chr6.2:3619422-3619441 | MS.gene57088:CDS | 40.0% |
| !! | ATAGTTGAGTTGATGGAGGA+GGG | - | chr6.2:3618537-3618556 | None:intergenic | 40.0% |
| !! | ATGAAAGTGCTGGAAGTCAA+GGG | + | chr6.2:3619423-3619442 | MS.gene57088:CDS | 40.0% |
| !! | GCAAGAGCATTAGTGTCTAT+GGG | + | chr6.2:3622403-3622422 | MS.gene57088:CDS | 40.0% |
| !! | TATAGTTGAGTTGATGGAGG+AGG | - | chr6.2:3618538-3618557 | None:intergenic | 40.0% |
| !! | TGCAAGAGCATTAGTGTCTA+TGG | + | chr6.2:3622402-3622421 | MS.gene57088:CDS | 40.0% |
| !!! | GATGACAAGGTTTTTTCTCC+TGG | - | chr6.2:3622373-3622392 | None:intergenic | 40.0% |
| !!! | GTGGAGATTTGTTTTGTCCT+GGG | - | chr6.2:3621789-3621808 | None:intergenic | 40.0% |
| !!! | TGGAGATTTGTTTTGTCCTG+GGG | - | chr6.2:3621788-3621807 | None:intergenic | 40.0% |
| AACGTTGGACAAACAGCTGT+AGG | + | chr6.2:3619335-3619354 | MS.gene57088:CDS | 45.0% | |
| AAGGACACGTTTGGACATGT+TGG | + | chr6.2:3621619-3621638 | MS.gene57088:CDS | 45.0% | |
| AAGTCACCAATCTAGCATGG+CGG | - | chr6.2:3621146-3621165 | None:intergenic | 45.0% | |
| ACAGGACAAACTAGAGGCAA+GGG | - | chr6.2:3620498-3620517 | None:intergenic | 45.0% | |
| ACATGGCTGCTCTTGAAAGT+AGG | + | chr6.2:3622527-3622546 | MS.gene57088:intron | 45.0% | |
| AGTCATGTATTATGGGACGG+AGG | + | chr6.2:3622083-3622102 | MS.gene57088:intron | 45.0% | |
| ATGCAAACATCCGTACACCT+TGG | + | chr6.2:3620108-3620127 | MS.gene57088:CDS | 45.0% | |
| ATGCAGAACAGCACAACACA+AGG | + | chr6.2:3620312-3620331 | MS.gene57088:intron | 45.0% | |
| CACCGTTTACCTGTTCTCTT+GGG | + | chr6.2:3619260-3619279 | MS.gene57088:CDS | 45.0% | |
| CCATTTGGAGGACACTAATC+AGG | + | chr6.2:3619827-3619846 | MS.gene57088:CDS | 45.0% | |
| CCTGATTAGTGTCCTCCAAA+TGG | - | chr6.2:3619830-3619849 | None:intergenic | 45.0% | |
| CTGAAGTCACCAATCTAGCA+TGG | - | chr6.2:3621149-3621168 | None:intergenic | 45.0% | |
| CTGTTTGTCCAACGTTGAAG+AGG | - | chr6.2:3619331-3619350 | None:intergenic | 45.0% | |
| GACAAACAGCTGTAGGAGTT+AGG | + | chr6.2:3619342-3619361 | MS.gene57088:CDS | 45.0% | |
| GAGGAGCTTGATACACTAGT+GGG | + | chr6.2:3622789-3622808 | MS.gene57088:CDS | 45.0% | |
| GATGTTCGTAATAGTTGGGC+TGG | + | chr6.2:3620927-3620946 | MS.gene57088:CDS | 45.0% | |
| GGAAGTCAAGGGTCTTTCAT+TGG | + | chr6.2:3619434-3619453 | MS.gene57088:CDS | 45.0% | |
| GGAATTCTAACTAGTGCTCC+AGG | - | chr6.2:3623029-3623048 | None:intergenic | 45.0% | |
| GGACACTAATCAGGTGCAAA+TGG | + | chr6.2:3619836-3619855 | MS.gene57088:intron | 45.0% | |
| GTCATGTATTATGGGACGGA+GGG | + | chr6.2:3622084-3622103 | MS.gene57088:intron | 45.0% | |
| TACAATAGGCCCAAGAGAAC+AGG | - | chr6.2:3619272-3619291 | None:intergenic | 45.0% | |
| TCAATGTGTTAGCAGCTGCT+TGG | + | chr6.2:3619775-3619794 | MS.gene57088:CDS | 45.0% | |
| TCACAAGTCATGTAGGCACT+CGG | + | chr6.2:3618928-3618947 | MS.gene57088:intron | 45.0% | |
| TCTGTGCCATCTATGTTCTG+TGG | - | chr6.2:3622490-3622509 | None:intergenic | 45.0% | |
| TCTTTACCGCCATGCTAGAT+TGG | + | chr6.2:3621137-3621156 | MS.gene57088:CDS | 45.0% | |
| TGAATTGTTTCCCATTGCCC+TGG | - | chr6.2:3619758-3619777 | None:intergenic | 45.0% | |
| TGACGCTATCTTAGGTGGAT+TGG | + | chr6.2:3621642-3621661 | MS.gene57088:CDS | 45.0% | |
| TGAGGAGCTTGATACACTAG+TGG | + | chr6.2:3622788-3622807 | MS.gene57088:CDS | 45.0% | |
| TTGGTGAAGATGGCGTCTAA+TGG | - | chr6.2:3619300-3619319 | None:intergenic | 45.0% | |
| ! | CACCCATTGCAAACCCTTTT+TGG | - | chr6.2:3623288-3623307 | None:intergenic | 45.0% |
| ! | GACCCTTTCAATGAAAGTGC+TGG | + | chr6.2:3619413-3619432 | MS.gene57088:CDS | 45.0% |
| ! | TGATACACTAGTGGGTCTCA+TGG | + | chr6.2:3622797-3622816 | MS.gene57088:CDS | 45.0% |
| ! | TGCTGTTTGTGATGCTCTCA+AGG | + | chr6.2:3620989-3621008 | MS.gene57088:CDS | 45.0% |
| !! | CATGTTGGTGACGCTATCTT+AGG | + | chr6.2:3621634-3621653 | MS.gene57088:CDS | 45.0% |
| !! | GCTATCTTAGGTGGATTGGT+GGG | + | chr6.2:3621646-3621665 | MS.gene57088:CDS | 45.0% |
| !!! | AGATTTGTTTTGTCCTGGGG+TGG | - | chr6.2:3621785-3621804 | None:intergenic | 45.0% |
| !!! | GGTGGAGATTTGTTTTGTCC+TGG | - | chr6.2:3621790-3621809 | None:intergenic | 45.0% |
| ACCTTGTCCTTCTGATCCAC+AGG | - | chr6.2:3619473-3619492 | None:intergenic | 50.0% | |
| ACTTCTGGTGCCCTAACACT+TGG | + | chr6.2:3622433-3622452 | MS.gene57088:CDS | 50.0% | |
| AGAGATATATCTGCCACCCC+AGG | + | chr6.2:3621769-3621788 | MS.gene57088:CDS | 50.0% | |
| ATGGGTCATCTATTGCGGGA+CGG | - | chr6.2:3621860-3621879 | None:intergenic | 50.0% | |
| CAAACATCCGTACACCTTGG+TGG | + | chr6.2:3620111-3620130 | MS.gene57088:CDS | 50.0% | |
| GACAGGACAAACTAGAGGCA+AGG | - | chr6.2:3620499-3620518 | None:intergenic | 50.0% | |
| GCACCGTTTACCTGTTCTCT+TGG | + | chr6.2:3619259-3619278 | MS.gene57088:CDS | 50.0% | |
| GGCCCAAGAGAACAGGTAAA+CGG | - | chr6.2:3619265-3619284 | None:intergenic | 50.0% | |
| GTGATTGATCGTCACCATCC+AGG | + | chr6.2:3623332-3623351 | MS.gene57088:CDS | 50.0% | |
| GTTGTTGAAGCCAGACCCTA+TGG | + | chr6.2:3619698-3619717 | MS.gene57088:intron | 50.0% | |
| TCAGGGACAGGACAAACTAG+AGG | - | chr6.2:3620504-3620523 | None:intergenic | 50.0% | |
| TCCTGTGGATCAGAAGGACA+AGG | + | chr6.2:3619469-3619488 | MS.gene57088:CDS | 50.0% | |
| TTGCAGGCATGCGTGGAAAT+TGG | + | chr6.2:3621232-3621251 | MS.gene57088:CDS | 50.0% | |
| ! | GTTTTGTGGCCACCACCATA+GGG | - | chr6.2:3619716-3619735 | None:intergenic | 50.0% |
| ! | TGCACTTTGAAGGAGGCTAG+AGG | + | chr6.2:3623220-3623239 | MS.gene57088:intron | 50.0% |
| !! | AGTTTTGTGGCCACCACCAT+AGG | - | chr6.2:3619717-3619736 | None:intergenic | 50.0% |
| !! | CATTGGCTTGCAACTTCACG+TGG | - | chr6.2:3620017-3620036 | None:intergenic | 50.0% |
| !! | CGCTATCTTAGGTGGATTGG+TGG | + | chr6.2:3621645-3621664 | MS.gene57088:CDS | 50.0% |
| !! | GGTGGTGGCCACAAAACTTT+TGG | + | chr6.2:3619719-3619738 | MS.gene57088:CDS | 50.0% |
| !! | GTTGGTGACGCTATCTTAGG+TGG | + | chr6.2:3621637-3621656 | MS.gene57088:CDS | 50.0% |
| ACTTTGCTTGCAGGCATGCG+TGG | + | chr6.2:3621225-3621244 | MS.gene57088:CDS | 55.0% | |
| GAAGGAGGCTAGAGGCTGAT+AGG | + | chr6.2:3623228-3623247 | MS.gene57088:intron | 55.0% | |
| GGCTGGTGTCTCAACTTTGC+AGG | + | chr6.2:3620944-3620963 | MS.gene57088:CDS | 55.0% | |
| GTCATCTATTGCGGGACGGA+GGG | - | chr6.2:3621856-3621875 | None:intergenic | 55.0% | |
| GTTGAAGCCAGACCCTATGG+TGG | + | chr6.2:3619701-3619720 | MS.gene57088:CDS | 55.0% | |
| GAAGCCAGACCCTATGGTGG+TGG | + | chr6.2:3619704-3619723 | MS.gene57088:CDS | 60.0% | |
| GGTCATCTATTGCGGGACGG+AGG | - | chr6.2:3621857-3621876 | None:intergenic | 60.0% | |
| GCGGGACGGAGGGAGAATGT+TGG | - | chr6.2:3621846-3621865 | None:intergenic | 65.0% | |
| GTGGCCACCACCATAGGGTC+TGG | - | chr6.2:3619711-3619730 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 3618402 | 3623457 | 3618402 | ID=MS.gene57088 |
| chr6.2 | mRNA | 3618402 | 3623457 | 3618402 | ID=MS.gene57088.t1;Parent=MS.gene57088 |
| chr6.2 | exon | 3618402 | 3618524 | 3618402 | ID=MS.gene57088.t1.exon1;Parent=MS.gene57088.t1 |
| chr6.2 | CDS | 3618402 | 3618524 | 3618402 | ID=cds.MS.gene57088.t1;Parent=MS.gene57088.t1 |
| chr6.2 | exon | 3619227 | 3619490 | 3619227 | ID=MS.gene57088.t1.exon2;Parent=MS.gene57088.t1 |
| chr6.2 | CDS | 3619227 | 3619490 | 3619227 | ID=cds.MS.gene57088.t1;Parent=MS.gene57088.t1 |
| chr6.2 | exon | 3619699 | 3619848 | 3619699 | ID=MS.gene57088.t1.exon3;Parent=MS.gene57088.t1 |
| chr6.2 | CDS | 3619699 | 3619848 | 3619699 | ID=cds.MS.gene57088.t1;Parent=MS.gene57088.t1 |
| chr6.2 | exon | 3619999 | 3620132 | 3619999 | ID=MS.gene57088.t1.exon4;Parent=MS.gene57088.t1 |
| chr6.2 | CDS | 3619999 | 3620132 | 3619999 | ID=cds.MS.gene57088.t1;Parent=MS.gene57088.t1 |
| chr6.2 | exon | 3620797 | 3621010 | 3620797 | ID=MS.gene57088.t1.exon5;Parent=MS.gene57088.t1 |
| chr6.2 | CDS | 3620797 | 3621010 | 3620797 | ID=cds.MS.gene57088.t1;Parent=MS.gene57088.t1 |
| chr6.2 | exon | 3621108 | 3621253 | 3621108 | ID=MS.gene57088.t1.exon6;Parent=MS.gene57088.t1 |
| chr6.2 | CDS | 3621108 | 3621253 | 3621108 | ID=cds.MS.gene57088.t1;Parent=MS.gene57088.t1 |
| chr6.2 | exon | 3621594 | 3621821 | 3621594 | ID=MS.gene57088.t1.exon7;Parent=MS.gene57088.t1 |
| chr6.2 | CDS | 3621594 | 3621821 | 3621594 | ID=cds.MS.gene57088.t1;Parent=MS.gene57088.t1 |
| chr6.2 | exon | 3622342 | 3622544 | 3622342 | ID=MS.gene57088.t1.exon8;Parent=MS.gene57088.t1 |
| chr6.2 | CDS | 3622342 | 3622544 | 3622342 | ID=cds.MS.gene57088.t1;Parent=MS.gene57088.t1 |
| chr6.2 | exon | 3622646 | 3622889 | 3622646 | ID=MS.gene57088.t1.exon9;Parent=MS.gene57088.t1 |
| chr6.2 | CDS | 3622646 | 3622889 | 3622646 | ID=cds.MS.gene57088.t1;Parent=MS.gene57088.t1 |
| chr6.2 | exon | 3623232 | 3623457 | 3623232 | ID=MS.gene57088.t1.exon10;Parent=MS.gene57088.t1 |
| chr6.2 | CDS | 3623232 | 3623457 | 3623232 | ID=cds.MS.gene57088.t1;Parent=MS.gene57088.t1 |
| Gene Sequence |
| Protein sequence |
