Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57213.t1 | CAI93189.1 | 97 | 197 | 6 | 0 | 1 | 197 | 259 | 455 | 2.40E-109 | 404.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57213.t1 | Q9FH90 | 60.4 | 217 | 83 | 2 | 1 | 214 | 260 | 476 | 7.8e-72 | 271.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57213.t1 | G7K596 | 97.0 | 197 | 6 | 0 | 1 | 197 | 259 | 455 | 1.8e-109 | 404.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene57213 | 0.820532 | 6.53E-53 | -1.69E-46 |
| MS.gene049159 | MS.gene57213 | 0.804246 | 2.37E-49 | -1.69E-46 |
| MS.gene049821 | MS.gene57213 | 0.801257 | 9.81E-49 | -1.69E-46 |
| MS.gene050551 | MS.gene57213 | 0.80366 | 3.14E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene57213 | 0.837092 | 6.37E-57 | -1.69E-46 |
| MS.gene050808 | MS.gene57213 | 0.810758 | 9.83E-51 | -1.69E-46 |
| MS.gene051102 | MS.gene57213 | 0.801331 | 9.47E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene57213 | 0.80266 | 5.05E-49 | -1.69E-46 |
| MS.gene05157 | MS.gene57213 | 0.803435 | 3.49E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene57213 | 0.815484 | 9.03E-52 | -1.69E-46 |
| MS.gene051800 | MS.gene57213 | 0.807652 | 4.55E-50 | -1.69E-46 |
| MS.gene052514 | MS.gene57213 | 0.8094 | 1.93E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene57213 | 0.835856 | 1.32E-56 | -1.69E-46 |
| MS.gene052665 | MS.gene57213 | 0.832926 | 7.15E-56 | -1.69E-46 |
| MS.gene053144 | MS.gene57213 | 0.803377 | 3.59E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene57213 | 0.831361 | 1.74E-55 | -1.69E-46 |
| MS.gene054584 | MS.gene57213 | 0.80631 | 8.75E-50 | -1.69E-46 |
| MS.gene055144 | MS.gene57213 | 0.806031 | 1.00E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene57213 | 0.842547 | 2.42E-58 | -1.69E-46 |
| MS.gene055466 | MS.gene57213 | 0.834916 | 2.27E-56 | -1.69E-46 |
| MS.gene055467 | MS.gene57213 | 0.81783 | 2.69E-52 | -1.69E-46 |
| MS.gene055468 | MS.gene57213 | 0.834157 | 3.53E-56 | -1.69E-46 |
| MS.gene055469 | MS.gene57213 | 0.832813 | 7.63E-56 | -1.69E-46 |
| MS.gene056308 | MS.gene57213 | 0.817983 | 2.48E-52 | -1.69E-46 |
| MS.gene057446 | MS.gene57213 | 0.811307 | 7.47E-51 | -1.69E-46 |
| MS.gene058010 | MS.gene57213 | 0.810448 | 1.15E-50 | -1.69E-46 |
| MS.gene058339 | MS.gene57213 | 0.817302 | 3.54E-52 | -1.69E-46 |
| MS.gene061006 | MS.gene57213 | 0.826301 | 2.92E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57213.t1 | MTR_5g016600 | 96.954 | 197 | 6 | 0 | 1 | 197 | 259 | 455 | 2.20e-138 | 397 |
| MS.gene57213.t1 | MTR_4g094912 | 72.165 | 194 | 49 | 2 | 1 | 194 | 265 | 453 | 3.29e-93 | 281 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57213.t1 | AT5G67230 | 60.369 | 217 | 83 | 2 | 1 | 214 | 260 | 476 | 1.78e-87 | 266 |
| MS.gene57213.t1 | AT4G36890 | 64.171 | 187 | 60 | 2 | 1 | 181 | 268 | 453 | 6.14e-76 | 238 |
Find 56 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAATTCATTACGATATA+CGG | 0.199782 | 5.2:-8348723 | MS.gene57213:CDS |
| CCGACAAAATTTGAATGGTC+TGG | 0.319336 | 5.2:-8348659 | MS.gene57213:CDS |
| CGATAAGCCAGAGTGGATTA+AGG | 0.360709 | 5.2:-8348597 | MS.gene57213:CDS |
| TGCAGCTGAAATTTCTTCAT+TGG | 0.365838 | 5.2:-8348834 | MS.gene57213:CDS |
| AACATCCTTCCAAAGTAATC+TGG | 0.378146 | 5.2:+8348622 | None:intergenic |
| GGGAGTTCAGGAGGAGAGTC+TGG | 0.378580 | 5.2:+8347181 | None:intergenic |
| CGACAAAATTTGAATGGTCT+GGG | 0.388127 | 5.2:-8348658 | MS.gene57213:CDS |
| ATGGGTGATTGACCCTCCTT+TGG | 0.392966 | 5.2:-8347236 | MS.gene57213:CDS |
| GGCCATGGAGTGCGTTTCGA+TGG | 0.429896 | 5.2:+8347202 | None:intergenic |
| CGTATATCGTAATGAATTGA+AGG | 0.445991 | 5.2:+8348724 | None:intergenic |
| ATGAAATTCAGAGTGTGAAA+TGG | 0.447404 | 5.2:-8348898 | MS.gene57213:CDS |
| GAAATGGATCGGTGCTGTTT+CGG | 0.465735 | 5.2:-8348882 | MS.gene57213:CDS |
| GCAGGACCTTGCACCGGCAT+TGG | 0.498839 | 5.2:+8348782 | None:intergenic |
| TTCAATTCATTACGATATAC+GGG | 0.499087 | 5.2:-8348722 | MS.gene57213:CDS |
| TGTTGCCGACAAAATTTGAA+TGG | 0.500655 | 5.2:-8348664 | MS.gene57213:CDS |
| AAGGATCTTGATGCATTGGA+TGG | 0.504502 | 5.2:-8348578 | MS.gene57213:CDS |
| GTGCAGTTTACATTGATGAC+CGG | 0.511167 | 5.2:-8348694 | MS.gene57213:CDS |
| TTGTCGGCAACACTGGTGCC+CGG | 0.518942 | 5.2:+8348675 | None:intergenic |
| GATTAAGGATCTTGATGCAT+TGG | 0.519612 | 5.2:-8348582 | MS.gene57213:CDS |
| ACCTTGCACCGGCATTGGCA+TGG | 0.519908 | 5.2:+8348787 | None:intergenic |
| TGGATCGGTGCTGTTTCGGT+TGG | 0.520170 | 5.2:-8348878 | MS.gene57213:CDS |
| GCCATGGAGTGCGTTTCGAT+GGG | 0.536780 | 5.2:+8347203 | None:intergenic |
| GTGCAAGGTCCTGCTTGTAA+TGG | 0.539674 | 5.2:-8348773 | MS.gene57213:CDS |
| TCAGGAGGAGAGTCTGGCCA+TGG | 0.544157 | 5.2:+8347187 | None:intergenic |
| TGAGGAAACCATGCCAATGC+CGG | 0.551614 | 5.2:-8348795 | MS.gene57213:CDS |
| AGGATCTTGATGCATTGGAT+GGG | 0.552743 | 5.2:-8348577 | MS.gene57213:CDS |
| ACCATGCCAATGCCGGTGCA+AGG | 0.552760 | 5.2:-8348788 | MS.gene57213:CDS |
| CAGCTGCATCAACAGAATGA+AGG | 0.558512 | 5.2:+8348849 | None:intergenic |
| TCAAGATCCTTAATCCACTC+TGG | 0.559323 | 5.2:+8348590 | None:intergenic |
| GAATTCCAGATTACTTTGGA+AGG | 0.561309 | 5.2:-8348627 | MS.gene57213:CDS |
| TTGTAATGGTACTGATAAGT+TGG | 0.564365 | 5.2:-8348759 | MS.gene57213:CDS |
| TCATTAGATGGGAGTTCAGG+AGG | 0.569861 | 5.2:+8347172 | None:intergenic |
| TGCAGTTTACATTGATGACC+GGG | 0.572154 | 5.2:-8348693 | MS.gene57213:CDS |
| ATGGTACTGATAAGTTGGTC+GGG | 0.572519 | 5.2:-8348754 | MS.gene57213:CDS |
| TCCCATCGAAACGCACTCCA+TGG | 0.588526 | 5.2:-8347204 | MS.gene57213:CDS |
| CTTGATGCATTGGATGGGGA+TGG | 0.588763 | 5.2:-8348572 | MS.gene57213:CDS |
| AATGGTACTGATAAGTTGGT+CGG | 0.589439 | 5.2:-8348755 | MS.gene57213:CDS |
| CAGACAGCAAATTCCCTGCT+CGG | 0.596900 | 5.2:-8348439 | MS.gene57213:intron |
| GCAACCACCAAAGCAAAACA+TGG | 0.606572 | 5.2:+8348477 | None:intergenic |
| GTAGAACCACTAGGGAGTTG+TGG | 0.607713 | 5.2:-8348503 | MS.gene57213:CDS |
| ACCTCTGTGGTAGAACCACT+AGG | 0.613698 | 5.2:-8348512 | MS.gene57213:CDS |
| GGATCTTGATGCATTGGATG+GGG | 0.614063 | 5.2:-8348576 | MS.gene57213:CDS |
| GATGGGACTGTGATGTCCAA+AGG | 0.622491 | 5.2:+8347220 | None:intergenic |
| GGGACTGTGATGTCCAAAGG+AGG | 0.626469 | 5.2:+8347223 | None:intergenic |
| ATTCATTACGATATACGGGA+AGG | 0.635243 | 5.2:-8348718 | MS.gene57213:CDS |
| TTACAAGCAGGACCTTGCAC+CGG | 0.643021 | 5.2:+8348776 | None:intergenic |
| GTTACTCTTGAGCAAGACAG+TGG | 0.658429 | 5.2:+8348533 | None:intergenic |
| TTATCAGTACCATTACAAGC+AGG | 0.660972 | 5.2:+8348764 | None:intergenic |
| CCTCTGTGGTAGAACCACTA+GGG | 0.669136 | 5.2:-8348511 | MS.gene57213:CDS |
| GGACTGTGATGTCCAAAGGA+GGG | 0.672528 | 5.2:+8347224 | None:intergenic |
| ATTCAGAGTGTGAAATGGAT+CGG | 0.672674 | 5.2:-8348893 | MS.gene57213:CDS |
| TGGCGTCCACAACTCCCTAG+TGG | 0.699177 | 5.2:+8348497 | None:intergenic |
| GTACTGATAAGTTGGTCGGG+TGG | 0.704370 | 5.2:-8348751 | MS.gene57213:CDS |
| ATGTTGACGATAAGCCAGAG+TGG | 0.723393 | 5.2:-8348604 | MS.gene57213:CDS |
| CCCTAGTGGTTCTACCACAG+AGG | 0.724372 | 5.2:+8348511 | None:intergenic |
| TTGCTCAAGAGTAACCTCTG+TGG | 0.749613 | 5.2:-8348525 | MS.gene57213:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTCATTTTCATTAGAT+GGG | + | chr5.2:8348861-8348880 | None:intergenic | 15.0% |
| !! | AATGAAAGATTCAATTTATG+TGG | - | chr5.2:8348161-8348180 | MS.gene57213:intron | 20.0% |
| !! | ATAATCATGACTATCTTAAT+AGG | - | chr5.2:8347893-8347912 | MS.gene57213:intron | 20.0% |
| !! | ATACAATTGGATATAATGAT+TGG | - | chr5.2:8348288-8348307 | MS.gene57213:intron | 20.0% |
| !! | ATGAAAGATTCAATTTATGT+GGG | - | chr5.2:8348162-8348181 | MS.gene57213:intron | 20.0% |
| !! | ATTAAGATAGTCATGATTAT+AGG | + | chr5.2:8347893-8347912 | None:intergenic | 20.0% |
| !! | CAAATATGCAAATAAATACA+AGG | + | chr5.2:8348717-8348736 | None:intergenic | 20.0% |
| !! | TACAATTGGATATAATGATT+GGG | - | chr5.2:8348289-8348308 | MS.gene57213:intron | 20.0% |
| !!! | ATTTATTTCTAGGTTCTTAT+AGG | - | chr5.2:8348620-8348639 | MS.gene57213:CDS | 20.0% |
| !!! | CTTTTTTCATTTTCATTAGA+TGG | + | chr5.2:8348862-8348881 | None:intergenic | 20.0% |
| ! | ACTTTATGACTTTCTTATAC+AGG | - | chr5.2:8348190-8348209 | MS.gene57213:intron | 25.0% |
| ! | ATAACATTTCTACTCCAATA+TGG | + | chr5.2:8348063-8348082 | None:intergenic | 25.0% |
| ! | ATGTTGTTAAAATGTGATCA+TGG | - | chr5.2:8348596-8348615 | MS.gene57213:CDS | 25.0% |
| ! | ATTCTAAGCAATGTTCATAT+GGG | + | chr5.2:8348031-8348050 | None:intergenic | 25.0% |
| ! | CTTCAATTCATTACGATATA+CGG | - | chr5.2:8347296-8347315 | MS.gene57213:intron | 25.0% |
| ! | GAAATCATTAACAAGTGATT+TGG | + | chr5.2:8348408-8348427 | None:intergenic | 25.0% |
| ! | TATTCTAAGCAATGTTCATA+TGG | + | chr5.2:8348032-8348051 | None:intergenic | 25.0% |
| ! | TATTGGAGTAGAAATGTTAT+AGG | - | chr5.2:8348063-8348082 | MS.gene57213:intron | 25.0% |
| ! | TTCAATTCATTACGATATAC+GGG | - | chr5.2:8347297-8347316 | MS.gene57213:intron | 25.0% |
| !! | AAATTTTATGTCTGAGAATG+GGG | - | chr5.2:8348502-8348521 | MS.gene57213:CDS | 25.0% |
| !! | CAAATTTTATGTCTGAGAAT+GGG | - | chr5.2:8348501-8348520 | MS.gene57213:CDS | 25.0% |
| !! | GTCAAACAATTCACATTTTA+GGG | + | chr5.2:8347780-8347799 | None:intergenic | 25.0% |
| !! | TGAAAACGTTTAGAATATAG+AGG | + | chr5.2:8347618-8347637 | None:intergenic | 25.0% |
| !! | TGATCATGGAATTTATTTCT+AGG | - | chr5.2:8348610-8348629 | MS.gene57213:CDS | 25.0% |
| !! | TGTCAAACAATTCACATTTT+AGG | + | chr5.2:8347781-8347800 | None:intergenic | 25.0% |
| !! | TTAGATCAAAATGTTGGTAA+CGG | - | chr5.2:8348360-8348379 | MS.gene57213:intron | 25.0% |
| !! | TTTTGAATTCCAGATTACTT+TGG | - | chr5.2:8347388-8347407 | MS.gene57213:intron | 25.0% |
| !! | TTTTGTACTTCAATTTTCGA+CGG | - | chr5.2:8348649-8348668 | MS.gene57213:CDS | 25.0% |
| !!! | AAATCCTATTTTTCTGAGTT+AGG | + | chr5.2:8348339-8348358 | None:intergenic | 25.0% |
| !!! | GATTTGTTAGATCAAAATGT+TGG | - | chr5.2:8348354-8348373 | MS.gene57213:intron | 25.0% |
| !!! | TGTTTTTTACACTATCGTAT+TGG | + | chr5.2:8347710-8347729 | None:intergenic | 25.0% |
| AATTGGATATAATGATTGGG+TGG | - | chr5.2:8348292-8348311 | MS.gene57213:intron | 30.0% | |
| AATTTGACATCATGTGTGTT+TGG | - | chr5.2:8348569-8348588 | MS.gene57213:CDS | 30.0% | |
| ATCAGTCTCTAATTGTATGT+CGG | - | chr5.2:8348257-8348276 | MS.gene57213:intron | 30.0% | |
| ATGAAATTCAGAGTGTGAAA+TGG | - | chr5.2:8347121-8347140 | MS.gene57213:CDS | 30.0% | |
| ATTGCACTAATTGTAGAAGT+AGG | + | chr5.2:8348544-8348563 | None:intergenic | 30.0% | |
| ATTGGATATAATGATTGGGT+GGG | - | chr5.2:8348293-8348312 | MS.gene57213:intron | 30.0% | |
| CATAGAAATAAGACATCGTT+TGG | + | chr5.2:8347664-8347683 | None:intergenic | 30.0% | |
| CGTATATCGTAATGAATTGA+AGG | + | chr5.2:8347298-8347317 | None:intergenic | 30.0% | |
| CGTTTGGCAAATGAAAATTA+CGG | + | chr5.2:8347648-8347667 | None:intergenic | 30.0% | |
| GAAATAGCATCATATAGTCA+GGG | + | chr5.2:8348757-8348776 | None:intergenic | 30.0% | |
| GTTTGGCAAATGAAAATTAC+GGG | + | chr5.2:8347647-8347666 | None:intergenic | 30.0% | |
| TACATAATCCATGCACTATT+TGG | + | chr5.2:8348680-8348699 | None:intergenic | 30.0% | |
| TGAAAAAAATTCCGCACAAA+AGG | - | chr5.2:8348134-8348153 | MS.gene57213:intron | 30.0% | |
| TGAAATAGCATCATATAGTC+AGG | + | chr5.2:8348758-8348777 | None:intergenic | 30.0% | |
| TTGCACTAATTGTAGAAGTA+GGG | + | chr5.2:8348543-8348562 | None:intergenic | 30.0% | |
| ! | AAACGTTTAGAATATAGAGG+TGG | + | chr5.2:8347615-8347634 | None:intergenic | 30.0% |
| ! | AACGTTTAGAATATAGAGGT+GGG | + | chr5.2:8347614-8347633 | None:intergenic | 30.0% |
| ! | AATTTTATGTCTGAGAATGG+GGG | - | chr5.2:8348503-8348522 | MS.gene57213:CDS | 30.0% |
| ! | GCAAATTTTATGTCTGAGAA+TGG | - | chr5.2:8348500-8348519 | MS.gene57213:CDS | 30.0% |
| ! | TGCTGTGTTCTTAATAGTTT+TGG | + | chr5.2:8348483-8348502 | None:intergenic | 30.0% |
| ! | TTTCATTTTCTCCTTTTGTG+CGG | + | chr5.2:8348148-8348167 | None:intergenic | 30.0% |
| ! | TTTGTACTTCAATTTTCGAC+GGG | - | chr5.2:8348650-8348669 | MS.gene57213:CDS | 30.0% |
| !! | ACATTTTAGGGAGTAGTTTT+TGG | + | chr5.2:8347768-8347787 | None:intergenic | 30.0% |
| !! | TCTTCATTGGTTCAAAAAGA+AGG | - | chr5.2:8347198-8347217 | MS.gene57213:CDS | 30.0% |
| !! | TTGTAATGGTACTGATAAGT+TGG | - | chr5.2:8347260-8347279 | MS.gene57213:intron | 30.0% |
| AACATCCTTCCAAAGTAATC+TGG | + | chr5.2:8347400-8347419 | None:intergenic | 35.0% | |
| AGAATACACTGCTACCATAT+TGG | - | chr5.2:8348046-8348065 | MS.gene57213:intron | 35.0% | |
| ATTCAGAGTGTGAAATGGAT+CGG | - | chr5.2:8347126-8347145 | MS.gene57213:CDS | 35.0% | |
| ATTCATTACGATATACGGGA+AGG | - | chr5.2:8347301-8347320 | MS.gene57213:intron | 35.0% | |
| CATCATATAGTCAGGGATAT+AGG | + | chr5.2:8348750-8348769 | None:intergenic | 35.0% | |
| CGACAAAATTTGAATGGTCT+GGG | - | chr5.2:8347361-8347380 | MS.gene57213:intron | 35.0% | |
| GAATTCCAGATTACTTTGGA+AGG | - | chr5.2:8347392-8347411 | MS.gene57213:intron | 35.0% | |
| GATTAAGGATCTTGATGCAT+TGG | - | chr5.2:8347437-8347456 | MS.gene57213:intron | 35.0% | |
| GCTGAAGTCTATGATCAAAT+AGG | + | chr5.2:8348386-8348405 | None:intergenic | 35.0% | |
| GTCGGGTTAATTGATACAAT+TGG | - | chr5.2:8348275-8348294 | MS.gene57213:intron | 35.0% | |
| TAAGTAAGAACTGCATAAGC+TGG | + | chr5.2:8347976-8347995 | None:intergenic | 35.0% | |
| TACTGTCTAGTGATAATAGC+TGG | - | chr5.2:8348109-8348128 | MS.gene57213:intron | 35.0% | |
| TCAGTCTCTAATTGTATGTC+GGG | - | chr5.2:8348258-8348277 | MS.gene57213:intron | 35.0% | |
| TGCAGCTGAAATTTCTTCAT+TGG | - | chr5.2:8347185-8347204 | MS.gene57213:CDS | 35.0% | |
| TGTTGCCGACAAAATTTGAA+TGG | - | chr5.2:8347355-8347374 | MS.gene57213:intron | 35.0% | |
| TTACTATACAATCAGCCTGT+AGG | + | chr5.2:8348216-8348235 | None:intergenic | 35.0% | |
| TTATCAGTACCATTACAAGC+AGG | + | chr5.2:8347258-8347277 | None:intergenic | 35.0% | |
| TTTCTAGGTTCTTATAGGTC+AGG | - | chr5.2:8348625-8348644 | MS.gene57213:CDS | 35.0% | |
| ! | ACGTTTAGAATATAGAGGTG+GGG | + | chr5.2:8347613-8347632 | None:intergenic | 35.0% |
| ! | ACTTGTTAATGATTTCCCAG+GGG | - | chr5.2:8348412-8348431 | MS.gene57213:intron | 35.0% |
| ! | ATAGTAACTGCGTGATTTTC+TGG | - | chr5.2:8348229-8348248 | MS.gene57213:intron | 35.0% |
| ! | CACTTGTTAATGATTTCCCA+GGG | - | chr5.2:8348411-8348430 | MS.gene57213:intron | 35.0% |
| ! | CCAGACCATTCAAATTTTGT+CGG | + | chr5.2:8347363-8347382 | None:intergenic | 35.0% |
| ! | GTAACTGCTGAGTTTTCTTT+CGG | + | chr5.2:8347849-8347868 | None:intergenic | 35.0% |
| ! | TCACTTGTTAATGATTTCCC+AGG | - | chr5.2:8348410-8348429 | MS.gene57213:intron | 35.0% |
| ! | TTTTCATTAGATGGGAGTTC+AGG | + | chr5.2:8348853-8348872 | None:intergenic | 35.0% |
| !! | AATGGTACTGATAAGTTGGT+CGG | - | chr5.2:8347264-8347283 | MS.gene57213:intron | 35.0% |
| !! | ATGATGCTATTTCATGCAGA+TGG | - | chr5.2:8348764-8348783 | MS.gene57213:CDS | 35.0% |
| !! | TGATGCTATTTCATGCAGAT+GGG | - | chr5.2:8348765-8348784 | MS.gene57213:CDS | 35.0% |
| !!! | AGTTTTTGGCTTTGAGCTTT+TGG | + | chr5.2:8347754-8347773 | None:intergenic | 35.0% |
| !!! | GTTTTTGGCTTTGAGCTTTT+GGG | + | chr5.2:8347753-8347772 | None:intergenic | 35.0% |
| AAGGATCTTGATGCATTGGA+TGG | - | chr5.2:8347441-8347460 | MS.gene57213:intron | 40.0% | |
| ACTTTCTTATACAGGCCTAC+AGG | - | chr5.2:8348198-8348217 | MS.gene57213:intron | 40.0% | |
| AGCGCCTAACTCAGAAAAAT+AGG | - | chr5.2:8348332-8348351 | MS.gene57213:intron | 40.0% | |
| AGGATCTTGATGCATTGGAT+GGG | - | chr5.2:8347442-8347461 | MS.gene57213:intron | 40.0% | |
| ATAATGATTGGGTGGGTGAT+AGG | - | chr5.2:8348300-8348319 | MS.gene57213:intron | 40.0% | |
| ATATGGGTCAATGTGACTAG+AGG | + | chr5.2:8348015-8348034 | None:intergenic | 40.0% | |
| CCGACAAAATTTGAATGGTC+TGG | - | chr5.2:8347360-8347379 | MS.gene57213:intron | 40.0% | |
| GGTTCAAAAAGAAGGAGATG+AGG | - | chr5.2:8347206-8347225 | MS.gene57213:CDS | 40.0% | |
| TCAAGATCCTTAATCCACTC+TGG | + | chr5.2:8347432-8347451 | None:intergenic | 40.0% | |
| TGGGCATCATGTGATGATAT+AGG | - | chr5.2:8347937-8347956 | MS.gene57213:intron | 40.0% | |
| TTACTTAAGCACCCACTACA+AGG | - | chr5.2:8347989-8348008 | MS.gene57213:intron | 40.0% | |
| ! | CGTTTAGAATATAGAGGTGG+GGG | + | chr5.2:8347612-8347631 | None:intergenic | 40.0% |
| ! | CTCAGCAGTTACAGTTTTTG+TGG | - | chr5.2:8347857-8347876 | MS.gene57213:intron | 40.0% |
| ! | GTGCAGTTTACATTGATGAC+CGG | - | chr5.2:8347325-8347344 | MS.gene57213:intron | 40.0% |
| ! | GTTTAGAATATAGAGGTGGG+GGG | + | chr5.2:8347611-8347630 | None:intergenic | 40.0% |
| ! | TCAAATTTTGTCGGCAACAC+TGG | + | chr5.2:8347354-8347373 | None:intergenic | 40.0% |
| ! | TGCAGTTTACATTGATGACC+GGG | - | chr5.2:8347326-8347345 | MS.gene57213:intron | 40.0% |
| !! | ATGAAAAAAGTGTTCGCTGC+AGG | - | chr5.2:8348872-8348891 | MS.gene57213:CDS | 40.0% |
| !! | ATGGTACTGATAAGTTGGTC+GGG | - | chr5.2:8347265-8347284 | MS.gene57213:intron | 40.0% |
| !! | ATGTTTTGCTTTGGTGGTTG+CGG | - | chr5.2:8347544-8347563 | MS.gene57213:intron | 40.0% |
| AAATCCAAGCTGTACCCAGA+AGG | + | chr5.2:8348448-8348467 | None:intergenic | 45.0% | |
| ATGTTGACGATAAGCCAGAG+TGG | - | chr5.2:8347415-8347434 | MS.gene57213:intron | 45.0% | |
| CAGCTGCATCAACAGAATGA+AGG | + | chr5.2:8347173-8347192 | None:intergenic | 45.0% | |
| GCAACCACCAAAGCAAAACA+TGG | + | chr5.2:8347545-8347564 | None:intergenic | 45.0% | |
| GGATCTTGATGCATTGGATG+GGG | - | chr5.2:8347443-8347462 | MS.gene57213:intron | 45.0% | |
| GTTACTCTTGAGCAAGACAG+TGG | + | chr5.2:8347489-8347508 | None:intergenic | 45.0% | |
| TAATTGTAGAAGTAGGGCCC+TGG | + | chr5.2:8348537-8348556 | None:intergenic | 45.0% | |
| TATGTCTGAGAATGGGGGAA+GGG | - | chr5.2:8348508-8348527 | MS.gene57213:CDS | 45.0% | |
| TCATTAGATGGGAGTTCAGG+AGG | + | chr5.2:8348850-8348869 | None:intergenic | 45.0% | |
| TTATGTCTGAGAATGGGGGA+AGG | - | chr5.2:8348507-8348526 | MS.gene57213:CDS | 45.0% | |
| TTGCTCAAGAGTAACCTCTG+TGG | - | chr5.2:8347494-8347513 | MS.gene57213:intron | 45.0% | |
| ! | ATAGCGCATGCACTGATACT+TGG | - | chr5.2:8347917-8347936 | MS.gene57213:intron | 45.0% |
| ! | TAGCGCATGCACTGATACTT+GGG | - | chr5.2:8347918-8347937 | MS.gene57213:intron | 45.0% |
| ! | TTTTCTGAGTTAGGCGCTAC+TGG | + | chr5.2:8348330-8348349 | None:intergenic | 45.0% |
| !! | CGATAAGCCAGAGTGGATTA+AGG | - | chr5.2:8347422-8347441 | MS.gene57213:intron | 45.0% |
| !! | GAAATGGATCGGTGCTGTTT+CGG | - | chr5.2:8347137-8347156 | MS.gene57213:CDS | 45.0% |
| !! | TGTTTTGCTTTGGTGGTTGC+GGG | - | chr5.2:8347545-8347564 | MS.gene57213:intron | 45.0% |
| !!! | TTGGCTTTGAGCTTTTGGGT+GGG | + | chr5.2:8347749-8347768 | None:intergenic | 45.0% |
| !!! | TTTGGCTTTGAGCTTTTGGG+TGG | + | chr5.2:8347750-8347769 | None:intergenic | 45.0% |
| ACCTCTGTGGTAGAACCACT+AGG | - | chr5.2:8347507-8347526 | MS.gene57213:intron | 50.0% | |
| ATGGGTGATTGACCCTCCTT+TGG | - | chr5.2:8348783-8348802 | MS.gene57213:CDS | 50.0% | |
| ATGTCTGAGAATGGGGGAAG+GGG | - | chr5.2:8348509-8348528 | MS.gene57213:CDS | 50.0% | |
| CAGACAGCAAATTCCCTGCT+CGG | - | chr5.2:8347580-8347599 | MS.gene57213:intron | 50.0% | |
| CCTCTGTGGTAGAACCACTA+GGG | - | chr5.2:8347508-8347527 | MS.gene57213:intron | 50.0% | |
| CGGGTTGTCCAAATAGTGCA+TGG | - | chr5.2:8348669-8348688 | MS.gene57213:CDS | 50.0% | |
| CTTGATGCATTGGATGGGGA+TGG | - | chr5.2:8347447-8347466 | MS.gene57213:intron | 50.0% | |
| GATGGGACTGTGATGTCCAA+AGG | + | chr5.2:8348802-8348821 | None:intergenic | 50.0% | |
| GGACTGTGATGTCCAAAGGA+GGG | + | chr5.2:8348798-8348817 | None:intergenic | 50.0% | |
| GTAGAACCACTAGGGAGTTG+TGG | - | chr5.2:8347516-8347535 | MS.gene57213:intron | 50.0% | |
| GTGCAAGGTCCTGCTTGTAA+TGG | - | chr5.2:8347246-8347265 | MS.gene57213:intron | 50.0% | |
| TGAGGAAACCATGCCAATGC+CGG | - | chr5.2:8347224-8347243 | MS.gene57213:CDS | 50.0% | |
| TTACAAGCAGGACCTTGCAC+CGG | + | chr5.2:8347246-8347265 | None:intergenic | 50.0% | |
| ! | GACGCCATGTTTTGCTTTGG+TGG | - | chr5.2:8347538-8347557 | MS.gene57213:intron | 50.0% |
| ! | GATTTCCCAGGGGTATGTTC+CGG | - | chr5.2:8348422-8348441 | MS.gene57213:intron | 50.0% |
| ! | GTGACTAGAGGCCTTGTAGT+GGG | + | chr5.2:8348003-8348022 | None:intergenic | 50.0% |
| ! | GTGGACGCCATGTTTTGCTT+TGG | - | chr5.2:8347535-8347554 | MS.gene57213:intron | 50.0% |
| ! | TGTGACTAGAGGCCTTGTAG+TGG | + | chr5.2:8348004-8348023 | None:intergenic | 50.0% |
| !! | CTTTGAGCTTTTGGGTGGGT+TGG | + | chr5.2:8347745-8347764 | None:intergenic | 50.0% |
| !! | GTACTGATAAGTTGGTCGGG+TGG | - | chr5.2:8347268-8347287 | MS.gene57213:intron | 50.0% |
| GCCATGGAGTGCGTTTCGAT+GGG | + | chr5.2:8348819-8348838 | None:intergenic | 55.0% | |
| GGGACTGTGATGTCCAAAGG+AGG | + | chr5.2:8348799-8348818 | None:intergenic | 55.0% | |
| TCCCATCGAAACGCACTCCA+TGG | - | chr5.2:8348815-8348834 | MS.gene57213:CDS | 55.0% | |
| ! | CCCTAGTGGTTCTACCACAG+AGG | + | chr5.2:8347511-8347530 | None:intergenic | 55.0% |
| !! | TGGATCGGTGCTGTTTCGGT+TGG | - | chr5.2:8347141-8347160 | MS.gene57213:CDS | 55.0% |
| !!! | GCTTTTGGGTGGGTTGGCAT+TGG | + | chr5.2:8347739-8347758 | None:intergenic | 55.0% |
| ACCATGCCAATGCCGGTGCA+AGG | - | chr5.2:8347231-8347250 | MS.gene57213:CDS | 60.0% | |
| AGAAGGCCGGAACATACCCC+TGG | + | chr5.2:8348431-8348450 | None:intergenic | 60.0% | |
| CCAAGCTGTACCCAGAAGGC+CGG | + | chr5.2:8348444-8348463 | None:intergenic | 60.0% | |
| GAAGGCCGGAACATACCCCT+GGG | + | chr5.2:8348430-8348449 | None:intergenic | 60.0% | |
| GGCCATGGAGTGCGTTTCGA+TGG | + | chr5.2:8348820-8348839 | None:intergenic | 60.0% | |
| GGGAGTTCAGGAGGAGAGTC+TGG | + | chr5.2:8348841-8348860 | None:intergenic | 60.0% | |
| GGGGTATGTTCCGGCCTTCT+GGG | - | chr5.2:8348431-8348450 | MS.gene57213:intron | 60.0% | |
| TCAGGAGGAGAGTCTGGCCA+TGG | + | chr5.2:8348835-8348854 | None:intergenic | 60.0% | |
| TGGCGTCCACAACTCCCTAG+TGG | + | chr5.2:8347525-8347544 | None:intergenic | 60.0% | |
| TTGTCGGCAACACTGGTGCC+CGG | + | chr5.2:8347347-8347366 | None:intergenic | 60.0% | |
| ! | AGGGGTATGTTCCGGCCTTC+TGG | - | chr5.2:8348430-8348449 | MS.gene57213:intron | 60.0% |
| !! | ACCTTGCACCGGCATTGGCA+TGG | + | chr5.2:8347235-8347254 | None:intergenic | 60.0% |
| CCGGCCTTCTGGGTACAGCT+TGG | - | chr5.2:8348441-8348460 | MS.gene57213:CDS | 65.0% | |
| ! | GCAGGACCTTGCACCGGCAT+TGG | + | chr5.2:8347240-8347259 | None:intergenic | 65.0% |
| !! | AGAATGGGGGAAGGGGTGCC+AGG | - | chr5.2:8348516-8348535 | MS.gene57213:CDS | 65.0% |
| !! | GAATGGGGGAAGGGGTGCCA+GGG | - | chr5.2:8348517-8348536 | MS.gene57213:CDS | 65.0% |
| GTGGGGGGACTCACCGAGCA+GGG | + | chr5.2:8347596-8347615 | None:intergenic | 70.0% | |
| GGTGGGGGGACTCACCGAGC+AGG | + | chr5.2:8347597-8347616 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 8347108 | 8348933 | 8347108 | ID=MS.gene57213 |
| chr5.2 | mRNA | 8347108 | 8348933 | 8347108 | ID=MS.gene57213.t1;Parent=MS.gene57213 |
| chr5.2 | exon | 8348440 | 8348933 | 8348440 | ID=MS.gene57213.t1.exon1;Parent=MS.gene57213.t1 |
| chr5.2 | CDS | 8348440 | 8348933 | 8348440 | ID=cds.MS.gene57213.t1;Parent=MS.gene57213.t1 |
| chr5.2 | exon | 8347108 | 8347258 | 8347108 | ID=MS.gene57213.t1.exon2;Parent=MS.gene57213.t1 |
| chr5.2 | CDS | 8347108 | 8347258 | 8347108 | ID=cds.MS.gene57213.t1;Parent=MS.gene57213.t1 |
| Gene Sequence |
| Protein sequence |
