AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene57286


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57286.t1 MTR_8g090275 97.860 514 11 0 1 514 1 514 0.0 1025
MS.gene57286.t1 MTR_8g090285 79.070 516 103 3 1 514 2 514 0.0 828
MS.gene57286.t1 MTR_8g090270 76.641 518 82 4 1 514 2 484 0.0 732
MS.gene57286.t1 MTR_5g063390 70.860 477 135 1 1 473 1 477 0.0 692
MS.gene57286.t1 MTR_5g063390 65.230 348 117 1 130 473 1 348 6.52e-164 469
MS.gene57286.t1 MTR_5g019490 42.117 463 250 3 5 455 38 494 5.12e-111 338
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57286.t1 AT5G10190 69.485 485 143 2 1 480 1 485 0.0 687
MS.gene57286.t1 AT1G78130 70.488 471 136 2 1 468 1 471 0.0 660
MS.gene57286.t1 AT5G10190 71.594 345 98 0 1 345 1 345 1.61e-176 500
MS.gene57286.t1 AT5G10190 64.326 356 122 2 130 480 1 356 6.58e-165 471
MS.gene57286.t1 AT4G36790 41.907 451 258 2 5 455 42 488 3.92e-118 357
MS.gene57286.t1 AT2G18590 38.126 459 264 6 12 455 19 472 1.28e-95 298

Find 118 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCCTGTTGTTGGATTAT+TGG 0.114248 4.1:+10178028 MS.gene57286:CDS
TTTATAGTTTCTGCTTCATT+TGG 0.212769 4.1:+10177465 MS.gene57286:CDS
CATCTCCTCCACCTTCTTAC+AGG 0.213357 4.1:+10175547 MS.gene57286:CDS
GGAACTATTTCTGCAAATAT+TGG 0.230215 4.1:-10177939 None:intergenic
GGAAACCTTGGAAGTATTAT+TGG 0.246283 4.1:+10177084 MS.gene57286:CDS
ACATCAATCTTTGGTATATC+TGG 0.252770 4.1:+10177135 MS.gene57286:CDS
GCTTCATTTGGGTCTTTGTT+TGG 0.258137 4.1:+10177477 MS.gene57286:CDS
GCAATTTCAAGAGGTTTAAA+TGG 0.266877 4.1:+10176961 MS.gene57286:CDS
GTTTGTCATTTGCCACTCTT+TGG 0.291019 4.1:+10177391 MS.gene57286:CDS
TCATTTGCTCCTCCTGTTGT+TGG 0.303303 4.1:+10178020 MS.gene57286:CDS
ATGGTACAACAGCAATTCTT+TGG 0.311013 4.1:+10177436 MS.gene57286:CDS
ACTCTTTGGTTAGAACTAAT+AGG 0.318083 4.1:+10177405 MS.gene57286:CDS
ACGGAATCAGAAGATCCTTT+TGG 0.318779 4.1:-10178080 None:intergenic
TAGTGTTATAGTTGGTATAT+TGG 0.339062 4.1:+10177191 MS.gene57286:CDS
GTTAGTTGCCGGAGCATTCC+AGG 0.341774 4.1:-10177679 None:intergenic
TCTTTACCATTCAGTTCATT+TGG 0.343385 4.1:-10178335 None:intergenic
AGCAACCGTGGTGTGGCATT+TGG 0.346177 4.1:+10177045 MS.gene57286:CDS
TTATAGTTTCTGCTTCATTT+GGG 0.358433 4.1:+10177466 MS.gene57286:CDS
AGCAAGAATGGTTGCATTAG+AGG 0.370278 4.1:+10178235 MS.gene57286:CDS
AACATTATTCTCCCAGTGTT+TGG 0.370317 4.1:-10177534 None:intergenic
GCCACAATTATTTGAAATGA+TGG 0.370340 4.1:-10177336 None:intergenic
AGTACATACTTGTTAGTTGC+CGG 0.383635 4.1:-10177690 None:intergenic
AACTCTATGTTCTCTTCCCT+TGG 0.389261 4.1:-10178389 None:intergenic
CACAGCCTTCATGCATGGTC+TGG 0.391306 4.1:+10177629 MS.gene57286:CDS
TTCGGATCATTCCCATGGTC+AGG 0.397476 4.1:+10177369 MS.gene57286:CDS
GCAACTAGAGACTGAATTGC+TGG 0.405446 4.1:-10177006 None:intergenic
CTAGCCTCAACATCAATCTT+TGG 0.405866 4.1:+10177126 MS.gene57286:CDS
ATTTCAAATAATTGTGGCTC+AGG 0.406137 4.1:+10177341 MS.gene57286:CDS
CCCAGTGTTTGGTAACCTTA+GGG 0.407743 4.1:-10177523 None:intergenic
TCCCAGTGTTTGGTAACCTT+AGG 0.412919 4.1:-10177524 None:intergenic
TCGGACAGCTATATATGCTT+TGG 0.413358 4.1:+10177971 MS.gene57286:CDS
GCAACCGTGGTGTGGCATTT+GGG 0.418380 4.1:+10177046 MS.gene57286:CDS
TTTGGGTGGCTACAACTAAC+AGG 0.432702 4.1:+10177063 MS.gene57286:CDS
TTGGGTCTTTGTTTGGAGGA+TGG 0.443339 4.1:+10177484 MS.gene57286:CDS
TGTGCCAATAATCCAACAAC+AGG 0.446669 4.1:-10178032 None:intergenic
TCAAGAGGTTTAAATGGCAT+TGG 0.449252 4.1:+10176967 MS.gene57286:CDS
CCGTTGAAATCGAAACAGAT+AGG 0.449263 4.1:+10178099 MS.gene57286:CDS
TCTTTGTTTGGAGGATGGTT+CGG 0.449715 4.1:+10177489 MS.gene57286:CDS
CTTGCTCGATCTCTGTCTCT+CGG 0.450052 4.1:-10178218 None:intergenic
AGACAGAGATCGAGCAAGAA+TGG 0.461109 4.1:+10178223 MS.gene57286:CDS
AACGCTGATCCAACTGCGTT+AGG 0.461170 4.1:+10175389 MS.gene57286:CDS
AAGGCTGTGGATGGATCATC+AGG 0.468694 4.1:-10177615 None:intergenic
TCAATCATTCTGTTACCCTC+TGG 0.472188 4.1:+10175439 MS.gene57286:CDS
TCATGGGATTTGCTACATCC+TGG 0.472233 4.1:+10177661 MS.gene57286:CDS
CACACCACGGTTGCTATCAA+TGG 0.472389 4.1:-10177037 None:intergenic
TGCTAAAGGAACAGCTGAAC+CGG 0.473221 4.1:-10177571 None:intergenic
TCATTTGGGTCTTTGTTTGG+AGG 0.477996 4.1:+10177480 MS.gene57286:CDS
CTGTAAGAAGGTGGAGGAGA+TGG 0.486917 4.1:-10175546 None:intergenic
CGTGCACATGTTATTGCTCT+AGG 0.489987 4.1:+10175488 MS.gene57286:CDS
GCATTGATTAGTGTTATAGT+TGG 0.491293 4.1:+10177183 MS.gene57286:CDS
GGCTATAGACCAGTTCCAAA+AGG 0.492838 4.1:+10178065 MS.gene57286:CDS
TCGGAGATTACTTATCCCTA+AGG 0.494647 4.1:+10177508 MS.gene57286:CDS
ATAGCTGTCCGAGACTTCTC+AGG 0.494960 4.1:-10177960 None:intergenic
TCCATCATTTCAAATAATTG+TGG 0.500995 4.1:+10177335 MS.gene57286:CDS
TTAGAACCAAATGAACTGAA+TGG 0.503151 4.1:+10178329 MS.gene57286:CDS
AACAGCAGAACGGCTGCTAA+AGG 0.504637 4.1:-10177585 None:intergenic
TTGCTCGATCTCTGTCTCTC+GGG 0.510352 4.1:-10178217 None:intergenic
CTCTCGGGTATGTGCAGTAA+AGG 0.511918 4.1:-10178202 None:intergenic
TGCTACATCCTGGAATGCTC+CGG 0.525885 4.1:+10177671 MS.gene57286:CDS
CCAACTTCTTTGTATACTCC+TGG 0.527749 4.1:-10175356 None:intergenic
GTAAATAAGAACCTGTAAGA+AGG 0.528322 4.1:-10175558 None:intergenic
CAATCTTTGGTATATCTGGT+TGG 0.529034 4.1:+10177139 MS.gene57286:CDS
ATGATGATTTAGATTATCCA+AGG 0.529774 4.1:+10178372 MS.gene57286:CDS
CCTATCTGTTTCGATTTCAA+CGG 0.536774 4.1:-10178099 None:intergenic
GCTGATGAGTCATTGCTGCC+AGG 0.538215 4.1:+10175338 MS.gene57286:CDS
TGAAGCAGAAACTATAAAGA+AGG 0.539808 4.1:-10177460 None:intergenic
CGTTGAAATCGAAACAGATA+GGG 0.541194 4.1:+10178100 MS.gene57286:CDS
TCCCTAAGGTTACCAAACAC+TGG 0.543152 4.1:+10177522 MS.gene57286:CDS
TATACCAAAGATTGATGTTG+AGG 0.552826 4.1:-10177130 None:intergenic
CCCTAAGGTTACCAAACACT+GGG 0.556080 4.1:+10177523 MS.gene57286:CDS
AACCTTGGAAGTATTATTGG+TGG 0.556204 4.1:+10177087 MS.gene57286:CDS
TTTAATAAAAGAAGCAAAAG+CGG 0.556479 4.1:+10177302 MS.gene57286:CDS
AAATAGTTCCTGAGAAGTCT+CGG 0.558192 4.1:+10177952 MS.gene57286:CDS
TTATTTCAGAATAAAAGGAC+TGG 0.558591 4.1:-10177275 None:intergenic
GTGAGGGAACCTAACGCAGT+TGG 0.559692 4.1:-10175398 None:intergenic
ATGCAGACACAAAGTGTCAA+AGG 0.562578 4.1:-10178170 None:intergenic
CCAGGAGTATACAAAGAAGT+TGG 0.569677 4.1:+10175356 MS.gene57286:CDS
CACGATTGTGTCGCGTGGCG+AGG 0.573750 4.1:-10175469 None:intergenic
CTACAACTAACAGGAAACCT+TGG 0.573919 4.1:+10177072 MS.gene57286:CDS
CCATCCACAGCCTTCATGCA+TGG 0.574542 4.1:+10177624 MS.gene57286:CDS
CCATGCATGAAGGCTGTGGA+TGG 0.574600 4.1:-10177624 None:intergenic
CAGACCATGCATGAAGGCTG+TGG 0.579264 4.1:-10177628 None:intergenic
GACCACCAATAATACTTCCA+AGG 0.580854 4.1:-10177089 None:intergenic
ATGTTATCACAAATAAGTGC+CGG 0.589775 4.1:+10177552 MS.gene57286:CDS
TTTCAAATAATTGTGGCTCA+GGG 0.595267 4.1:+10177342 MS.gene57286:CDS
AAGAACCTGTAAGAAGGTGG+AGG 0.596913 4.1:-10175552 None:intergenic
GCAAATGACAAACCTGACCA+TGG 0.597618 4.1:-10177381 None:intergenic
AGAAATGCAGCAACTAGAGG+TGG 0.598755 4.1:+10178262 MS.gene57286:CDS
GATTAGGTGGCAATTTCAAG+AGG 0.603130 4.1:+10176952 MS.gene57286:intron
GAAGGCAGAGACGTTGACAT+TGG 0.604050 4.1:+10175283 MS.gene57286:CDS
CAAATGACAAACCTGACCAT+GGG 0.604095 4.1:-10177380 None:intergenic
GGAGATGGCGACGAGGAATG+TGG 0.604110 4.1:-10175531 None:intergenic
CATTGATAGCAACCGTGGTG+TGG 0.609671 4.1:+10177038 MS.gene57286:CDS
AGAATGATTGAACAAGGGAT+CGG 0.609997 4.1:-10175427 None:intergenic
CTGAATTGCTGGAATTACAA+TGG 0.612577 4.1:-10176995 None:intergenic
GGTAACAGAATGATTGAACA+AGG 0.615802 4.1:-10175433 None:intergenic
CAAGGGATCGGAAAAGAGTG+AGG 0.615891 4.1:-10175415 None:intergenic
AATAAGAACCTGTAAGAAGG+TGG 0.616116 4.1:-10175555 None:intergenic
AAATGCAGCATCACTCGCCA+AGG 0.617202 4.1:+10178124 MS.gene57286:CDS
GCCAATAATCCAACAACAGG+AGG 0.618850 4.1:-10178029 None:intergenic
TAAAACCAGACCATGCATGA+AGG 0.622116 4.1:-10177634 None:intergenic
ATCAGAAATGCAGCAACTAG+AGG 0.627643 4.1:+10178259 MS.gene57286:CDS
ACCACGGTTGCTATCAATGG+TGG 0.632248 4.1:-10177034 None:intergenic
AGAGACGTTGACATTGGTGC+TGG 0.637129 4.1:+10175289 MS.gene57286:CDS
ACCGTGGTGTGGCATTTGGG+TGG 0.638640 4.1:+10177049 MS.gene57286:CDS
CCTTGCATATGTGAACTACC+GGG 0.641465 4.1:-10178441 None:intergenic
TGGCGAGGTAAGCAGCCAGA+GGG 0.643316 4.1:-10175454 None:intergenic
TATTAGTTCTAACCAAAGAG+TGG 0.649205 4.1:-10177403 None:intergenic
GTGGCGAGGTAAGCAGCCAG+AGG 0.660424 4.1:-10175455 None:intergenic
GAACTAATAGGCTTCTCACA+TGG 0.667993 4.1:+10177417 MS.gene57286:CDS
TGATGATTTAGATTATCCAA+GGG 0.671852 4.1:+10178373 MS.gene57286:CDS
AAGGGATCGGAAAAGAGTGA+GGG 0.678118 4.1:-10175414 None:intergenic
TCCACCATTGATAGCAACCG+TGG 0.681448 4.1:+10177033 MS.gene57286:CDS
AGGTGGAGGAGATGGCGACG+AGG 0.683207 4.1:-10175538 None:intergenic
AGGCAGCATTAACAGCAGAA+CGG 0.684535 4.1:-10177595 None:intergenic
GCCACCCAAATGCCACACCA+CGG 0.691633 4.1:-10177050 None:intergenic
GTAACAGAATGATTGAACAA+GGG 0.709064 4.1:-10175432 None:intergenic
ATGTGCACGATTGTGTCGCG+TGG 0.710569 4.1:-10175474 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCACATAAAATATAAAATT+TGG + chr4.1:10176770-10176789 MS.gene57286:intron 10.0%
!!! TTTTTCAAAATTTAACTATT+TGG + chr4.1:10177911-10177930 MS.gene57286:intron 10.0%
!! ACATTATTAATCTATGTATT+TGG + chr4.1:10176873-10176892 MS.gene57286:intron 15.0%
!! ATATGCTAGAAAATTAATAA+AGG - chr4.1:10177731-10177750 None:intergenic 15.0%
!! ATCATAAAAATCATCTATAT+TGG + chr4.1:10175865-10175884 MS.gene57286:intron 15.0%
!! TAAAGATAAAAAATATGCAT+TGG - chr4.1:10175962-10175981 None:intergenic 15.0%
!! TGTATATTAGTAGAAAAAAA+TGG + chr4.1:10176082-10176101 MS.gene57286:intron 15.0%
!!! AATTTTGTATATATCCTAAA+AGG + chr4.1:10177786-10177805 MS.gene57286:intron 15.0%
!!! ATCTTTTATTTCAGAATAAA+AGG - chr4.1:10177283-10177302 None:intergenic 15.0%
!! TTTAATAAAAGAAGCAAAAG+CGG + chr4.1:10177302-10177321 MS.gene57286:CDS 20.0%
!!! AAATATTAATGACTTGCAAA+CGG - chr4.1:10177893-10177912 None:intergenic 20.0%
!!! AGTTTTGCATAAATATGATT+AGG + chr4.1:10176936-10176955 MS.gene57286:intron 20.0%
!!! TTAATATACAATTTTGAGCT+TGG - chr4.1:10175929-10175948 None:intergenic 20.0%
!!! TTACTCTTCTAAACTTTTAA+CGG - chr4.1:10176409-10176428 None:intergenic 20.0%
! ATATGTTGAAACAAGTCAAA+AGG - chr4.1:10175588-10175607 None:intergenic 25.0%
! ATGATGATTTAGATTATCCA+AGG + chr4.1:10178372-10178391 MS.gene57286:CDS 25.0%
! CCTAAAAGGAAAATCTAAAA+TGG + chr4.1:10177800-10177819 MS.gene57286:intron 25.0%
! CTGAGTTACTATATATAGTT+AGG - chr4.1:10177840-10177859 None:intergenic 25.0%
! TATTTGGTAAGTATAGTGAA+TGG + chr4.1:10176889-10176908 MS.gene57286:intron 25.0%
! TCCATCATTTCAAATAATTG+TGG + chr4.1:10177335-10177354 MS.gene57286:CDS 25.0%
! TGATGATTTAGATTATCCAA+GGG + chr4.1:10178373-10178392 MS.gene57286:CDS 25.0%
! TTATAGTTTCTGCTTCATTT+GGG + chr4.1:10177466-10177485 MS.gene57286:CDS 25.0%
! TTATTTCAGAATAAAAGGAC+TGG - chr4.1:10177278-10177297 None:intergenic 25.0%
! TTTATAGTTTCTGCTTCATT+TGG + chr4.1:10177465-10177484 MS.gene57286:CDS 25.0%
! TTTGCATAAATATGATTAGG+TGG + chr4.1:10176939-10176958 MS.gene57286:intron 25.0%
!! ATCTAAAATGGTAACTTCTT+AGG + chr4.1:10177812-10177831 MS.gene57286:intron 25.0%
!! CCATTTTAGATTTTCCTTTT+AGG - chr4.1:10177803-10177822 None:intergenic 25.0%
!! GGTAGTACTAAATGAAATTT+TGG + chr4.1:10175668-10175687 MS.gene57286:intron 25.0%
!! TAGTGTTATAGTTGGTATAT+TGG + chr4.1:10177191-10177210 MS.gene57286:CDS 25.0%
!! TTATTGGCACAAAATGTTTT+TGG + chr4.1:10178044-10178063 MS.gene57286:CDS 25.0%
!!! CTCTATCACTTTTTTTTTGA+AGG - chr4.1:10176302-10176321 None:intergenic 25.0%
!!! TGATAACTGTTGTCATTTTT+TGG - chr4.1:10177246-10177265 None:intergenic 25.0%
AAAAATGGTCAAAGTATGTG+AGG + chr4.1:10176097-10176116 MS.gene57286:intron 30.0%
ACATCAATCTTTGGTATATC+TGG + chr4.1:10177135-10177154 MS.gene57286:CDS 30.0%
ACTCTTTGGTTAGAACTAAT+AGG + chr4.1:10177405-10177424 MS.gene57286:CDS 30.0%
ACTTGAACCAAAATTTCATG+TGG - chr4.1:10175625-10175644 None:intergenic 30.0%
ATGTTATCACAAATAAGTGC+CGG + chr4.1:10177552-10177571 MS.gene57286:CDS 30.0%
ATTTCAAATAATTGTGGCTC+AGG + chr4.1:10177341-10177360 MS.gene57286:CDS 30.0%
GCAATTTCAAGAGGTTTAAA+TGG + chr4.1:10176961-10176980 MS.gene57286:CDS 30.0%
GTAAATAAGAACCTGTAAGA+AGG - chr4.1:10175561-10175580 None:intergenic 30.0%
GTAACAGAATGATTGAACAA+GGG - chr4.1:10175435-10175454 None:intergenic 30.0%
TATACCAAAGATTGATGTTG+AGG - chr4.1:10177133-10177152 None:intergenic 30.0%
TCAACATATCTGTACTTGTT+TGG + chr4.1:10175599-10175618 MS.gene57286:intron 30.0%
TCTTTACCATTCAGTTCATT+TGG - chr4.1:10178338-10178357 None:intergenic 30.0%
TGAAGCAGAAACTATAAAGA+AGG - chr4.1:10177463-10177482 None:intergenic 30.0%
TTAGAACCAAATGAACTGAA+TGG + chr4.1:10178329-10178348 MS.gene57286:CDS 30.0%
TTTCAAATAATTGTGGCTCA+GGG + chr4.1:10177342-10177361 MS.gene57286:CDS 30.0%
! GCCACAATTATTTGAAATGA+TGG - chr4.1:10177339-10177358 None:intergenic 30.0%
! TCCTTTATGGTTCTATCTTT+GGG + chr4.1:10176710-10176729 MS.gene57286:intron 30.0%
! TGAATTTTGTCCAACTAGAT+TGG - chr4.1:10176237-10176256 None:intergenic 30.0%
!! GCATTGATTAGTGTTATAGT+TGG + chr4.1:10177183-10177202 MS.gene57286:CDS 30.0%
!! GGAACTATTTCTGCAAATAT+TGG - chr4.1:10177942-10177961 None:intergenic 30.0%
!! TATTAGTTCTAACCAAAGAG+TGG - chr4.1:10177406-10177425 None:intergenic 30.0%
!!! ACTTTTATTTTGCCTAGACT+TGG + chr4.1:10175647-10175666 MS.gene57286:intron 30.0%
!!! TTGTCATTTTTTGGAAAGTG+TGG - chr4.1:10177237-10177256 None:intergenic 30.0%
AAAAACAATACAGATCGCCT+TGG - chr4.1:10178144-10178163 None:intergenic 35.0%
AAATAGTTCCTGAGAAGTCT+CGG + chr4.1:10177952-10177971 MS.gene57286:CDS 35.0%
AACATTATTCTCCCAGTGTT+TGG - chr4.1:10177537-10177556 None:intergenic 35.0%
AATAAGAACCTGTAAGAAGG+TGG - chr4.1:10175558-10175577 None:intergenic 35.0%
ACAGTTAGTGTAGAAGTTGT+TGG + chr4.1:10175717-10175736 MS.gene57286:intron 35.0%
ACCCAAAGATAGAACCATAA+AGG - chr4.1:10176714-10176733 None:intergenic 35.0%
AGAATGATTGAACAAGGGAT+CGG - chr4.1:10175430-10175449 None:intergenic 35.0%
ATAGTGCACAATGTCAAACA+TGG + chr4.1:10176123-10176142 MS.gene57286:intron 35.0%
ATGGTACAACAGCAATTCTT+TGG + chr4.1:10177436-10177455 MS.gene57286:CDS 35.0%
CAATCTTTGGTATATCTGGT+TGG + chr4.1:10177139-10177158 MS.gene57286:CDS 35.0%
CAGTTAGTGTAGAAGTTGTT+GGG + chr4.1:10175718-10175737 MS.gene57286:intron 35.0%
CATTTAGTACTACCAAGTCT+AGG - chr4.1:10175662-10175681 None:intergenic 35.0%
CCTATCTGTTTCGATTTCAA+CGG - chr4.1:10178102-10178121 None:intergenic 35.0%
CGTTGAAATCGAAACAGATA+GGG + chr4.1:10178100-10178119 MS.gene57286:CDS 35.0%
CTGAATTGCTGGAATTACAA+TGG - chr4.1:10176998-10177017 None:intergenic 35.0%
GGTAACAGAATGATTGAACA+AGG - chr4.1:10175436-10175455 None:intergenic 35.0%
GTGCAAATCTCACAATTTCA+GGG + chr4.1:10176792-10176811 MS.gene57286:intron 35.0%
TCAAGAGGTTTAAATGGCAT+TGG + chr4.1:10176967-10176986 MS.gene57286:CDS 35.0%
TGCAAATCTCACAATTTCAG+GGG + chr4.1:10176793-10176812 MS.gene57286:intron 35.0%
TTGAAACAAGTCAAAAGGAG+AGG - chr4.1:10175583-10175602 None:intergenic 35.0%
! AGTACATACTTGTTAGTTGC+CGG - chr4.1:10177693-10177712 None:intergenic 35.0%
! GTCCTTTATGGTTCTATCTT+TGG + chr4.1:10176709-10176728 MS.gene57286:intron 35.0%
! TGTTTGGCCACATGAAATTT+TGG + chr4.1:10175615-10175634 MS.gene57286:intron 35.0%
! TTGGAGAATAGCTTTTCATC+TGG + chr4.1:10177158-10177177 MS.gene57286:CDS 35.0%
!! AACCTTGGAAGTATTATTGG+TGG + chr4.1:10177087-10177106 MS.gene57286:CDS 35.0%
!! GGAAACCTTGGAAGTATTAT+TGG + chr4.1:10177084-10177103 MS.gene57286:CDS 35.0%
!!! GGTCTGGTTTTAGTTATCAT+GGG + chr4.1:10177645-10177664 MS.gene57286:CDS 35.0%
!!! TGGTCTGGTTTTAGTTATCA+TGG + chr4.1:10177644-10177663 MS.gene57286:CDS 35.0%
AACTCTATGTTCTCTTCCCT+TGG - chr4.1:10178392-10178411 None:intergenic 40.0%
AGCAAGAATGGTTGCATTAG+AGG + chr4.1:10178235-10178254 MS.gene57286:CDS 40.0%
ATCAGAAATGCAGCAACTAG+AGG + chr4.1:10178259-10178278 MS.gene57286:CDS 40.0%
CAAATGACAAACCTGACCAT+GGG - chr4.1:10177383-10177402 None:intergenic 40.0%
CCAACTTCTTTGTATACTCC+TGG - chr4.1:10175359-10175378 None:intergenic 40.0%
CCGTTGAAATCGAAACAGAT+AGG + chr4.1:10178099-10178118 MS.gene57286:CDS 40.0%
CTACAACTAACAGGAAACCT+TGG + chr4.1:10177072-10177091 MS.gene57286:CDS 40.0%
CTAGCCTCAACATCAATCTT+TGG + chr4.1:10177126-10177145 MS.gene57286:CDS 40.0%
GAACTAATAGGCTTCTCACA+TGG + chr4.1:10177417-10177436 MS.gene57286:CDS 40.0%
GACCACCAATAATACTTCCA+AGG - chr4.1:10177092-10177111 None:intergenic 40.0%
GATTAGGTGGCAATTTCAAG+AGG + chr4.1:10176952-10176971 MS.gene57286:intron 40.0%
GCTTCATTTGGGTCTTTGTT+TGG + chr4.1:10177477-10177496 MS.gene57286:CDS 40.0%
GGTGCAAATCTCACAATTTC+AGG + chr4.1:10176791-10176810 MS.gene57286:intron 40.0%
GTGCAGATCTCAAATATGAG+AGG + chr4.1:10176740-10176759 MS.gene57286:intron 40.0%
TAAAACCAGACCATGCATGA+AGG - chr4.1:10177637-10177656 None:intergenic 40.0%
TCAATCATTCTGTTACCCTC+TGG + chr4.1:10175439-10175458 MS.gene57286:CDS 40.0%
TCATTCACTATTAGCTCCAG+TGG - chr4.1:10176854-10176873 None:intergenic 40.0%
TCCTCCTGTTGTTGGATTAT+TGG + chr4.1:10178028-10178047 MS.gene57286:CDS 40.0%
TCGGACAGCTATATATGCTT+TGG + chr4.1:10177971-10177990 MS.gene57286:CDS 40.0%
TCGGAGATTACTTATCCCTA+AGG + chr4.1:10177508-10177527 MS.gene57286:CDS 40.0%
TGTGCCAATAATCCAACAAC+AGG - chr4.1:10178035-10178054 None:intergenic 40.0%
TTCGTACAACATAACTGCGT+AGG - chr4.1:10176332-10176351 None:intergenic 40.0%
! ACGGAATCAGAAGATCCTTT+TGG - chr4.1:10178083-10178102 None:intergenic 40.0%
! ATGCAGACACAAAGTGTCAA+AGG - chr4.1:10178173-10178192 None:intergenic 40.0%
! CCAGGAGTATACAAAGAAGT+TGG + chr4.1:10175356-10175375 MS.gene57286:CDS 40.0%
! GTTTGTCATTTGCCACTCTT+TGG + chr4.1:10177391-10177410 MS.gene57286:CDS 40.0%
! TATGGTTCTATCTTTGGGTC+AGG + chr4.1:10176715-10176734 MS.gene57286:intron 40.0%
! TCATTTGGGTCTTTGTTTGG+AGG + chr4.1:10177480-10177499 MS.gene57286:CDS 40.0%
! TCTTTGTTTGGAGGATGGTT+CGG + chr4.1:10177489-10177508 MS.gene57286:CDS 40.0%
!! TGCTCTAGGTGCTTTTCTTT+GGG + chr4.1:10175502-10175521 MS.gene57286:CDS 40.0%
!! TTGCTCTAGGTGCTTTTCTT+TGG + chr4.1:10175501-10175520 MS.gene57286:CDS 40.0%
!!! ACGAGAAAGTTTTGTTGTCC+CGG + chr4.1:10178423-10178442 MS.gene57286:CDS 40.0%
!!! TCAGAAGATCCTTTTGGAAC+TGG - chr4.1:10178077-10178096 None:intergenic 40.0%
AACCAGTGAGAGCTAATCAG+TGG + chr4.1:10175779-10175798 MS.gene57286:intron 45.0%
AAGAACCTGTAAGAAGGTGG+AGG - chr4.1:10175555-10175574 None:intergenic 45.0%
AAGGGATCGGAAAAGAGTGA+GGG - chr4.1:10175417-10175436 None:intergenic 45.0%
AGAAATGCAGCAACTAGAGG+TGG + chr4.1:10178262-10178281 MS.gene57286:CDS 45.0%
AGACAGAGATCGAGCAAGAA+TGG + chr4.1:10178223-10178242 MS.gene57286:CDS 45.0%
AGGCAGCATTAACAGCAGAA+CGG - chr4.1:10177598-10177617 None:intergenic 45.0%
CCCTAAGGTTACCAAACACT+GGG + chr4.1:10177523-10177542 MS.gene57286:CDS 45.0%
CGTGCACATGTTATTGCTCT+AGG + chr4.1:10175488-10175507 MS.gene57286:CDS 45.0%
GCAAATGACAAACCTGACCA+TGG - chr4.1:10177384-10177403 None:intergenic 45.0%
GCAACTAGAGACTGAATTGC+TGG - chr4.1:10177009-10177028 None:intergenic 45.0%
GCCAATAATCCAACAACAGG+AGG - chr4.1:10178032-10178051 None:intergenic 45.0%
GGCTATAGACCAGTTCCAAA+AGG + chr4.1:10178065-10178084 MS.gene57286:CDS 45.0%
TAGAACCATAAAGGACCGAG+CGG - chr4.1:10176705-10176724 None:intergenic 45.0%
TCATTTGCTCCTCCTGTTGT+TGG + chr4.1:10178020-10178039 MS.gene57286:CDS 45.0%
TCCAGCATCACCAATCTAGT+TGG + chr4.1:10176224-10176243 MS.gene57286:intron 45.0%
TCCCTAAGGTTACCAAACAC+TGG + chr4.1:10177522-10177541 MS.gene57286:CDS 45.0%
TGCTAAAGGAACAGCTGAAC+CGG - chr4.1:10177574-10177593 None:intergenic 45.0%
TGGCATCTAATACGAGTCAG+AGG + chr4.1:10176143-10176162 MS.gene57286:intron 45.0%
TTCACTATTAGCTCCAGTGG+CGG - chr4.1:10176851-10176870 None:intergenic 45.0%
TTCTACACTAACTGTCCCCA+CGG - chr4.1:10175712-10175731 None:intergenic 45.0%
TTTGGGTGGCTACAACTAAC+AGG + chr4.1:10177063-10177082 MS.gene57286:CDS 45.0%
! AAAGTTTGAACCCGCTGACT+CGG - chr4.1:10175818-10175837 None:intergenic 45.0%
! ATTGTGGCTCAGGGAGTTTT+CGG + chr4.1:10177351-10177370 MS.gene57286:CDS 45.0%
! CCCAGTGTTTGGTAACCTTA+GGG - chr4.1:10177526-10177545 None:intergenic 45.0%
! GAGTTTTCGGATCATTCCCA+TGG + chr4.1:10177364-10177383 MS.gene57286:CDS 45.0%
! TCCCAGTGTTTGGTAACCTT+AGG - chr4.1:10177527-10177546 None:intergenic 45.0%
! TTGGGTCTTTGTTTGGAGGA+TGG + chr4.1:10177484-10177503 MS.gene57286:CDS 45.0%
!! TCATGGGATTTGCTACATCC+TGG + chr4.1:10177661-10177680 MS.gene57286:CDS 45.0%
!! TCCAACTAGATTGGTGATGC+TGG - chr4.1:10176228-10176247 None:intergenic 45.0%
AAATGCAGCATCACTCGCCA+AGG + chr4.1:10178124-10178143 MS.gene57286:CDS 50.0%
AACAGCAGAACGGCTGCTAA+AGG - chr4.1:10177588-10177607 None:intergenic 50.0%
AACGCTGATCCAACTGCGTT+AGG + chr4.1:10175389-10175408 MS.gene57286:CDS 50.0%
AAGGCTGTGGATGGATCATC+AGG - chr4.1:10177618-10177637 None:intergenic 50.0%
ACCACGGTTGCTATCAATGG+TGG - chr4.1:10177037-10177056 None:intergenic 50.0%
AGAGACGTTGACATTGGTGC+TGG + chr4.1:10175289-10175308 MS.gene57286:CDS 50.0%
AGCTAATCAGTGGCGTTGTC+AGG + chr4.1:10175789-10175808 MS.gene57286:intron 50.0%
ATAGCTGTCCGAGACTTCTC+AGG - chr4.1:10177963-10177982 None:intergenic 50.0%
CAAGGGATCGGAAAAGAGTG+AGG - chr4.1:10175418-10175437 None:intergenic 50.0%
CACACCACGGTTGCTATCAA+TGG - chr4.1:10177040-10177059 None:intergenic 50.0%
CATCTCCTCCACCTTCTTAC+AGG + chr4.1:10175547-10175566 MS.gene57286:CDS 50.0%
CTCTCGGGTATGTGCAGTAA+AGG - chr4.1:10178205-10178224 None:intergenic 50.0%
CTGTAAGAAGGTGGAGGAGA+TGG - chr4.1:10175549-10175568 None:intergenic 50.0%
CTTGCTCGATCTCTGTCTCT+CGG - chr4.1:10178221-10178240 None:intergenic 50.0%
GAAGGCAGAGACGTTGACAT+TGG + chr4.1:10175283-10175302 MS.gene57286:CDS 50.0%
GCAAAGTCAAATGCACCGCT+CGG + chr4.1:10176687-10176706 MS.gene57286:intron 50.0%
GGTTCTATCTTTGGGTCAGG+TGG + chr4.1:10176718-10176737 MS.gene57286:intron 50.0%
TGCTACATCCTGGAATGCTC+CGG + chr4.1:10177671-10177690 MS.gene57286:CDS 50.0%
TTCGGATCATTCCCATGGTC+AGG + chr4.1:10177369-10177388 MS.gene57286:CDS 50.0%
TTGCTCGATCTCTGTCTCTC+GGG - chr4.1:10178220-10178239 None:intergenic 50.0%
! CATTGATAGCAACCGTGGTG+TGG + chr4.1:10177038-10177057 MS.gene57286:CDS 50.0%
! TCCACCATTGATAGCAACCG+TGG + chr4.1:10177033-10177052 MS.gene57286:CDS 50.0%
!! AAGTTTGAACCCGCTGACTC+GGG - chr4.1:10175817-10175836 None:intergenic 50.0%
AGCAACCGTGGTGTGGCATT+TGG + chr4.1:10177045-10177064 MS.gene57286:CDS 55.0%
ATGCACCGCTCGGTCCTTTA+TGG + chr4.1:10176697-10176716 MS.gene57286:intron 55.0%
ATGTGCACGATTGTGTCGCG+TGG - chr4.1:10175477-10175496 None:intergenic 55.0%
CACAGCCTTCATGCATGGTC+TGG + chr4.1:10177629-10177648 MS.gene57286:CDS 55.0%
CAGACCATGCATGAAGGCTG+TGG - chr4.1:10177631-10177650 None:intergenic 55.0%
CCATCCACAGCCTTCATGCA+TGG + chr4.1:10177624-10177643 MS.gene57286:CDS 55.0%
CCATGCATGAAGGCTGTGGA+TGG - chr4.1:10177627-10177646 None:intergenic 55.0%
GCAACCGTGGTGTGGCATTT+GGG + chr4.1:10177046-10177065 MS.gene57286:CDS 55.0%
GCTGATGAGTCATTGCTGCC+AGG + chr4.1:10175338-10175357 MS.gene57286:CDS 55.0%
GTGAGGGAACCTAACGCAGT+TGG - chr4.1:10175401-10175420 None:intergenic 55.0%
TGCATCCTCTCAGCTGTACG+TGG + chr4.1:10176823-10176842 MS.gene57286:intron 55.0%
TTGTCAGGATCCCGAGTCAG+CGG + chr4.1:10175804-10175823 MS.gene57286:intron 55.0%
! CGCCACTGATTAGCTCTCAC+TGG - chr4.1:10175784-10175803 None:intergenic 55.0%
! GTTAGTTGCCGGAGCATTCC+AGG - chr4.1:10177682-10177701 None:intergenic 55.0%
AACTGTCCCCACGGACAGCT+GGG - chr4.1:10175703-10175722 None:intergenic 60.0%
ACCGTGGTGTGGCATTTGGG+TGG + chr4.1:10177049-10177068 MS.gene57286:CDS 60.0%
GCCACCCAAATGCCACACCA+CGG - chr4.1:10177053-10177072 None:intergenic 60.0%
GGAGATGGCGACGAGGAATG+TGG - chr4.1:10175534-10175553 None:intergenic 60.0%
TAACTGTCCCCACGGACAGC+TGG - chr4.1:10175704-10175723 None:intergenic 60.0%
TGGCGAGGTAAGCAGCCAGA+GGG - chr4.1:10175457-10175476 None:intergenic 60.0%
TGTCAGGATCCCGAGTCAGC+GGG + chr4.1:10175805-10175824 MS.gene57286:intron 60.0%
AGGTGGAGGAGATGGCGACG+AGG - chr4.1:10175541-10175560 None:intergenic 65.0%
CACGATTGTGTCGCGTGGCG+AGG - chr4.1:10175472-10175491 None:intergenic 65.0%
CGGAGCCACGTACAGCTGAG+AGG - chr4.1:10176831-10176850 None:intergenic 65.0%
GTGGCGAGGTAAGCAGCCAG+AGG - chr4.1:10175458-10175477 None:intergenic 65.0%
CCACGGACAGCTGGGACAGG+GGG - chr4.1:10175695-10175714 None:intergenic 70.0%
CCCACGGACAGCTGGGACAG+GGG - chr4.1:10175696-10175715 None:intergenic 70.0%
CCCCACGGACAGCTGGGACA+GGG - chr4.1:10175697-10175716 None:intergenic 70.0%
CCCCTGTCCCAGCTGTCCGT+GGG + chr4.1:10175693-10175712 MS.gene57286:intron 70.0%
CCCTGTCCCAGCTGTCCGTG+GGG + chr4.1:10175694-10175713 MS.gene57286:intron 70.0%
GCTGTACGTGGCTCCGCCAC+TGG + chr4.1:10176835-10176854 MS.gene57286:intron 70.0%
TCCCCACGGACAGCTGGGAC+AGG - chr4.1:10175698-10175717 None:intergenic 70.0%
CCCCCTGTCCCAGCTGTCCG+TGG + chr4.1:10175692-10175711 MS.gene57286:intron 75.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 10175281 10178448 10175281 ID=MS.gene57286
chr4.1 mRNA 10175281 10178448 10175281 ID=MS.gene57286.t1;Parent=MS.gene57286
chr4.1 exon 10175281 10175568 10175281 ID=MS.gene57286.t1.exon1;Parent=MS.gene57286.t1
chr4.1 CDS 10175281 10175568 10175281 ID=cds.MS.gene57286.t1;Parent=MS.gene57286.t1
chr4.1 exon 10176958 10177703 10176958 ID=MS.gene57286.t1.exon2;Parent=MS.gene57286.t1
chr4.1 CDS 10176958 10177703 10176958 ID=cds.MS.gene57286.t1;Parent=MS.gene57286.t1
chr4.1 exon 10177938 10178448 10177938 ID=MS.gene57286.t1.exon3;Parent=MS.gene57286.t1
chr4.1 CDS 10177938 10178448 10177938 ID=cds.MS.gene57286.t1;Parent=MS.gene57286.t1
Gene Sequence

>MS.gene57286

ATGAAGGCAGAGACGTTGACATTGGTGCTGGTGAATCTTGCAAGTATTATGCAGAGAGCTGATGAGTCATTGCTGCCAGGAGTATACAAAGAAGTTGGTGCTGAACTTAACGCTGATCCAACTGCGTTAGGTTCCCTCACTCTTTTCCGATCCCTTGTTCAATCATTCTGTTACCCTCTGGCTGCTTACCTCGCCACGCGACACAATCGTGCACATGTTATTGCTCTAGGTGCTTTTCTTTGGGCTGCTGCCACATTCCTCGTCGCCATCTCCTCCACCTTCTTACAGGTTCTTATTTACCTCTCCTTTTGACTTGTTTCAACATATCTGTACTTGTTTGGCCACATGAAATTTTGGTTCAAGTCAACTTTTATTTTGCCTAGACTTGGTAGTACTAAATGAAATTTTGGACCCCCTGTCCCAGCTGTCCGTGGGGACAGTTAGTGTAGAAGTTGTTGGGACGTTAAATCTAAACTCTTGAAGAAAAAAAATGTTATTAACCAGTGAGAGCTAATCAGTGGCGTTGTCAGGATCCCGAGTCAGCGGGTTCAAACTTTTGAACTTTAATTATCAATTGAAATAATATCATAAAAATCATCTATATTGGAAAATTATATTGTAATGATTGTAAAAGAAAAAATTATACCAAGCTCAAAATTGTATATTAAAAAAATTATACCAATGCATATTTTTTATCTTTAATATCTTAAATTATCTATTAAAAAAATTATGAAAATTTTACATTTTGAAAATATTCATCGAGACGAATACAACATCTTATATGATAATATTATTTATCTTTGTATATTAGTAGAAAAAAATGGTCAAAGTATGTGAGGTCAATAGTGCACAATGTCAAACATGGCATCTAATACGAGTCAGAGGAGTATGACTTTTAGTTTCGACTAATTTTTTAAAAAAATCGCTTATTTGTTTTTTATGATCCAGCATCACCAATCTAGTTGGACAAAATTCAATTGAATAAAAAACTTTACAAATATAAGTGATAGAGAGAGCTCCTTCAAAAAAAAAGTGATAGAGAGTTGAACCTACGCAGTTATGTTGTACGAATAAATTTTTTATCGATTGAATCAACACATACTGACTTATCAGTTTTAATATTTACCGTTAAAAGTTTAGAAGAGTAATATATAAAAAGAAAAAAAGTTTATCAAAAAAAAAAGAAAAAAAACGAAGAGATTAAATAAAATATACAAGAAGAGAAATCAAAGATTTTTTGACACAGTAATCGAAGATTACTCTAAGAAAAAAACTATGAATTACACTTTTCTTCTAAAAAGTTATGAATTACACTTTTCTTTTAGAAGAGTAATTAATGAATGAATTACTATAAAGTAATATGTATATAGCATTTGCAGTTAACTGATGTAATCAATTTATAATAAGCAAAGTCAAATGCACCGCTCGGTCCTTTATGGTTCTATCTTTGGGTCAGGTGGTGCAGATCTCAAATATGAGAGGATTCATAATCACATAAAATATAAAATTTGGTGCAAATCTCACAATTTCAGGGGATGCAGCTGCATCCTCTCAGCTGTACGTGGCTCCGCCACTGGAGCTAATAGTGAATGACATTATTAATCTATGTATTTGGTAAGTATAGTGAATGGCATTGTTCATCAATAAATGATTATAGTTTTGCATAAATATGATTAGGTGGCAATTTCAAGAGGTTTAAATGGCATTGGACTAGCCATTGTAATTCCAGCAATTCAGTCTCTAGTTGCTGACTCCACCATTGATAGCAACCGTGGTGTGGCATTTGGGTGGCTACAACTAACAGGAAACCTTGGAAGTATTATTGGTGGTCTTTTCTCAGTACTACTAGCCTCAACATCAATCTTTGGTATATCTGGTTGGAGAATAGCTTTTCATCTGGTTGCATTGATTAGTGTTATAGTTGGTATATTGGTACGCATCTACGCTAATGATCCACACTTTCCAAAAAATGACAACAGTTATCAAACTTCAAACCAGTCCTTTTATTCTGAAATAAAAGATTTAATAAAAGAAGCAAAAGCGGTTATAAAAATTCCATCATTTCAAATAATTGTGGCTCAGGGAGTTTTCGGATCATTCCCATGGTCAGGTTTGTCATTTGCCACTCTTTGGTTAGAACTAATAGGCTTCTCACATGGTACAACAGCAATTCTTTGGACCTTCTTTATAGTTTCTGCTTCATTTGGGTCTTTGTTTGGAGGATGGTTCGGAGATTACTTATCCCTAAGGTTACCAAACACTGGGAGAATAATGTTATCACAAATAAGTGCCGGTTCAGCTGTTCCTTTAGCAGCCGTTCTGCTGTTAATGCTGCCTGATGATCCATCCACAGCCTTCATGCATGGTCTGGTTTTAGTTATCATGGGATTTGCTACATCCTGGAATGCTCCGGCAACTAACAAGTATGTACTAAGTTTATATTAGCACCTTTATTAATTTTCTAGCATATATATTGAGAAAAGTTTCTAGTGTATTTTATGTGTCAATTTTGTATATATCCTAAAAGGAAAATCTAAAATGGTAACTTCTTAGGTACCTAACTATATATAGTAACTCAGACTAACAACTACTGAACATTGAGTCATTGACCGTTTGCAAGTCATTAATATTTTTTCAAAATTTAACTATTTGGACAGTCCAATATTTGCAGAAATAGTTCCTGAGAAGTCTCGGACAGCTATATATGCTTTGGATCAATCTTTCGAGTCTATATTGCAATCATTTGCTCCTCCTGTTGTTGGATTATTGGCACAAAATGTTTTTGGCTATAGACCAGTTCCAAAAGGATCTTCTGATTCCGTTGAAATCGAAACAGATAGGGAAAATGCAGCATCACTCGCCAAGGCGATCTGTATTGTTTTTGTAATTCCTTTGACACTTTGTGTCTGCATCTACTCATTCCTTTACTGCACATACCCGAGAGACAGAGATCGAGCAAGAATGGTTGCATTAGAGGAATCAGAAATGCAGCAACTAGAGGTGGAAGATTGCACAAGAGAAAAAGAAGAATATTGTGAAATTCATGTTTTAGAACCAAATGAACTGAATGGTAAAGAAATTAGCAAGATTGATGATGATTTAGATTATCCAAGGGAAGAGAACATAGAGTTAGATGATAATGACGAGAAAGTTTTGTTGTCCCGGTAG

Protein sequence

>MS.gene57286.t1

MKAETLTLVLVNLASIMQRADESLLPGVYKEVGAELNADPTALGSLTLFRSLVQSFCYPLAAYLATRHNRAHVIALGAFLWAAATFLVAISSTFLQVAISRGLNGIGLAIVIPAIQSLVADSTIDSNRGVAFGWLQLTGNLGSIIGGLFSVLLASTSIFGISGWRIAFHLVALISVIVGILVRIYANDPHFPKNDNSYQTSNQSFYSEIKDLIKEAKAVIKIPSFQIIVAQGVFGSFPWSGLSFATLWLELIGFSHGTTAILWTFFIVSASFGSLFGGWFGDYLSLRLPNTGRIMLSQISAGSAVPLAAVLLLMLPDDPSTAFMHGLVLVIMGFATSWNAPATNNPIFAEIVPEKSRTAIYALDQSFESILQSFAPPVVGLLAQNVFGYRPVPKGSSDSVEIETDRENAASLAKAICIVFVIPLTLCVCIYSFLYCTYPRDRDRARMVALEESEMQQLEVEDCTREKEEYCEIHVLEPNELNGKEISKIDDDLDYPREENIELDDNDEKVLLSR