Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57288.t1 | XP_013442186.1 | 100 | 323 | 0 | 0 | 1 | 323 | 1 | 323 | 4.40E-195 | 690.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57288.t1 | A0A072TG43 | 100.0 | 323 | 0 | 0 | 1 | 323 | 1 | 323 | 3.2e-195 | 690.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050817 | MS.gene57288 | 0.820923 | 5.31E-53 | -1.69E-46 |
| MS.gene050818 | MS.gene57288 | 0.848539 | 5.75E-60 | -1.69E-46 |
| MS.gene050894 | MS.gene57288 | 0.826011 | 3.43E-54 | -1.69E-46 |
| MS.gene053416 | MS.gene57288 | 0.808417 | 3.13E-50 | -1.69E-46 |
| MS.gene053417 | MS.gene57288 | 0.806492 | 8.01E-50 | -1.69E-46 |
| MS.gene054585 | MS.gene57288 | 0.814712 | 1.34E-51 | -1.69E-46 |
| MS.gene054999 | MS.gene57288 | 0.80691 | 6.54E-50 | -1.69E-46 |
| MS.gene055251 | MS.gene57288 | 0.831993 | 1.22E-55 | -1.69E-46 |
| MS.gene055331 | MS.gene57288 | 0.813819 | 2.11E-51 | -1.69E-46 |
| MS.gene056266 | MS.gene57288 | -0.811345 | 7.34E-51 | -1.69E-46 |
| MS.gene058827 | MS.gene57288 | 0.827331 | 1.66E-54 | -1.69E-46 |
| MS.gene061044 | MS.gene57288 | 0.815698 | 8.09E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57288.t1 | MTR_0276s0010 | 100.000 | 323 | 0 | 0 | 1 | 323 | 1 | 323 | 0.0 | 685 |
| MS.gene57288.t1 | MTR_3g102680 | 58.307 | 319 | 129 | 3 | 8 | 323 | 36 | 353 | 2.94e-133 | 393 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57288.t1 | AT5G10200 | 90.432 | 324 | 30 | 1 | 1 | 323 | 1 | 324 | 0.0 | 625 |
| MS.gene57288.t1 | AT5G10200 | 90.432 | 324 | 30 | 1 | 1 | 323 | 1 | 324 | 0.0 | 625 |
| MS.gene57288.t1 | AT5G10200 | 90.432 | 324 | 30 | 1 | 1 | 323 | 1 | 324 | 0.0 | 625 |
| MS.gene57288.t1 | AT5G43120 | 52.548 | 314 | 145 | 3 | 11 | 320 | 23 | 336 | 7.00e-118 | 352 |
| MS.gene57288.t1 | AT5G43120 | 52.548 | 314 | 145 | 3 | 11 | 320 | 23 | 336 | 7.89e-118 | 352 |
| MS.gene57288.t1 | AT3G50030 | 49.211 | 317 | 134 | 4 | 8 | 320 | 9 | 302 | 3.63e-103 | 311 |
Find 86 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTACCTTGTGACATGTATT+TGG | 0.181144 | 4.1:-10194570 | None:intergenic |
| AATAAGGAATGTATATATTT+TGG | 0.230293 | 4.1:-10193891 | None:intergenic |
| CCAAGGAACTCATTGCTAAT+TGG | 0.253973 | 4.1:-10194131 | None:intergenic |
| ATTCCCAGCTCTATGAATTC+AGG | 0.267825 | 4.1:-10193805 | None:intergenic |
| ATGATATGAGCTGCATAATA+AGG | 0.301312 | 4.1:-10193907 | None:intergenic |
| TGGCTATTGATTGTCTTCTA+TGG | 0.301791 | 4.1:+10194535 | MS.gene57288:CDS |
| TTCTCCCTATCAGTGGTCTT+TGG | 0.309537 | 4.1:+10193755 | MS.gene57288:CDS |
| TGGTTCCTACACAATGAATA+TGG | 0.343437 | 4.1:+10193930 | MS.gene57288:CDS |
| TTCAGATGATTGGCAGTATA+TGG | 0.344104 | 4.1:+10194515 | MS.gene57288:CDS |
| TTTACCAATATGTTGATAGA+AGG | 0.350454 | 4.1:+10194172 | MS.gene57288:CDS |
| GAGGGTAGCAGTTAGAGCTT+TGG | 0.371302 | 4.1:+10194038 | MS.gene57288:CDS |
| TATTATGCAGCTCATATCAT+TGG | 0.378316 | 4.1:+10193910 | MS.gene57288:CDS |
| CGGCATGGGCGGTGTTGAAA+TGG | 0.381441 | 4.1:+10194224 | MS.gene57288:CDS |
| TTAGCCTTCTATCAACATAT+TGG | 0.382403 | 4.1:-10194176 | None:intergenic |
| GAAAATTCACCAGCTGGTAT+TGG | 0.383617 | 4.1:+10194399 | MS.gene57288:CDS |
| TAGAAATTCTTGCTTGCATA+TGG | 0.385235 | 4.1:-10194340 | None:intergenic |
| GTCTAGGAAGGCCGAGGAAT+GGG | 0.391308 | 4.1:+10194248 | MS.gene57288:CDS |
| AGGGTAGCAGTTAGAGCTTT+GGG | 0.392182 | 4.1:+10194039 | MS.gene57288:CDS |
| CATATGGTAGGAAGAAATTC+CGG | 0.398197 | 4.1:-10194324 | None:intergenic |
| TTGCTCGCTCTTCAGATGAT+TGG | 0.408759 | 4.1:+10194505 | MS.gene57288:CDS |
| TTCTAAGAGGTAGGTTGACT+TGG | 0.413383 | 4.1:+10194007 | MS.gene57288:CDS |
| CTCGAGAATTTCACCGTGAC+TGG | 0.417747 | 4.1:-10194100 | None:intergenic |
| CCAATTAGCAATGAGTTCCT+TGG | 0.422140 | 4.1:+10194131 | MS.gene57288:CDS |
| CACAATGCTTCAATAATTCC+AGG | 0.425354 | 4.1:-10194477 | None:intergenic |
| AATGCATGTCTGCTCTCATA+TGG | 0.429025 | 4.1:+10193833 | MS.gene57288:CDS |
| ACACTTGCTCTGCGTTTGCT+TGG | 0.430357 | 4.1:-10193685 | None:intergenic |
| GTGTTCCAAAGACCACTGAT+AGG | 0.430593 | 4.1:-10193760 | None:intergenic |
| GGACCTGTTGCTAGTTGCCC+TGG | 0.461427 | 4.1:+10194459 | MS.gene57288:CDS |
| CCTTTAGTTGAGCTTCTAAG+AGG | 0.473520 | 4.1:+10193994 | MS.gene57288:CDS |
| GTTAATGAAAATTCACCAGC+TGG | 0.484392 | 4.1:+10194393 | MS.gene57288:CDS |
| TGACCCTGAATTCATAGAGC+TGG | 0.484686 | 4.1:+10193801 | MS.gene57288:CDS |
| TTCCCAGCTCTATGAATTCA+GGG | 0.490784 | 4.1:-10193804 | None:intergenic |
| ATTCCAGGGCAACTAGCAAC+AGG | 0.491637 | 4.1:-10194462 | None:intergenic |
| CAAAAGAAGCATCCTGGGTA+TGG | 0.491996 | 4.1:-10193643 | None:intergenic |
| GTGTCAAGATGATGATGGTC+AGG | 0.496111 | 4.1:+10193732 | MS.gene57288:CDS |
| GGGCTAGCCAACTGCAATGT+TGG | 0.498049 | 4.1:+10194268 | MS.gene57288:CDS |
| TCTATGAATTCAGGGTCATT+CGG | 0.498186 | 4.1:-10193796 | None:intergenic |
| ACAATTTGTCATCAGAAGCT+TGG | 0.499520 | 4.1:+10194432 | MS.gene57288:CDS |
| TGATCTTCTTACACGCGGCA+TGG | 0.501426 | 4.1:+10194209 | MS.gene57288:CDS |
| ATGACACAAAAGAAGCATCC+TGG | 0.509285 | 4.1:-10193649 | None:intergenic |
| TTCACCGTGACTGGCTAAAG+TGG | 0.511711 | 4.1:-10194091 | None:intergenic |
| GGCTAAAGTGGGAAAAGTGC+TGG | 0.517032 | 4.1:-10194079 | None:intergenic |
| GTTGACTTGGGTTGAGCAGA+GGG | 0.523039 | 4.1:+10194020 | MS.gene57288:CDS |
| GACCCTGAATTCATAGAGCT+GGG | 0.530003 | 4.1:+10193802 | MS.gene57288:CDS |
| CTTAATAAGCCAATACCAGC+TGG | 0.532024 | 4.1:-10194408 | None:intergenic |
| TTCTTCCATATTCATTGTGT+AGG | 0.537968 | 4.1:-10193935 | None:intergenic |
| TTTGTCATCAGAAGCTTGGT+AGG | 0.539277 | 4.1:+10194436 | MS.gene57288:CDS |
| CTTCTTACACGCGGCATGGG+CGG | 0.541650 | 4.1:+10194213 | MS.gene57288:CDS |
| CCTCTTAGAAGCTCAACTAA+AGG | 0.542272 | 4.1:-10193994 | None:intergenic |
| GATCTTCTTACACGCGGCAT+GGG | 0.543576 | 4.1:+10194210 | MS.gene57288:CDS |
| TCTAAGAGGTAGGTTGACTT+GGG | 0.544283 | 4.1:+10194008 | MS.gene57288:CDS |
| TTGTCATCAGAAGCTTGGTA+GGG | 0.554096 | 4.1:+10194437 | MS.gene57288:CDS |
| TAACAAAACTACCTGGCATG+TGG | 0.556418 | 4.1:+10194361 | MS.gene57288:CDS |
| AACAAAACTACCTGGCATGT+GGG | 0.557380 | 4.1:+10194362 | MS.gene57288:CDS |
| ACAAGACCACCCCACATGCC+AGG | 0.559253 | 4.1:-10194372 | None:intergenic |
| AGTCTAGGAAGGCCGAGGAA+TGG | 0.560531 | 4.1:+10194247 | MS.gene57288:CDS |
| TGTTCCAAAGACCACTGATA+GGG | 0.571674 | 4.1:-10193759 | None:intergenic |
| TGTCATCAGAAGCTTGGTAG+GGG | 0.574943 | 4.1:+10194438 | MS.gene57288:CDS |
| TAGTTGAGCTTCTAAGAGGT+AGG | 0.575441 | 4.1:+10193998 | MS.gene57288:CDS |
| GCAGAAAGTTCTGTGCATGC+TGG | 0.577817 | 4.1:+10193961 | MS.gene57288:CDS |
| CACTGTGATCTTCTTACACG+CGG | 0.580191 | 4.1:+10194204 | MS.gene57288:CDS |
| TGACACAAAAGAAGCATCCT+GGG | 0.582906 | 4.1:-10193648 | None:intergenic |
| AATTCTTGCTTGCATATGGT+AGG | 0.583132 | 4.1:-10194336 | None:intergenic |
| GGTTGACTTGGGTTGAGCAG+AGG | 0.586421 | 4.1:+10194019 | MS.gene57288:CDS |
| CTTAGAAGCTCAACTAAAGG+AGG | 0.588830 | 4.1:-10193991 | None:intergenic |
| GAAGAGACCAACATTGCAGT+TGG | 0.590523 | 4.1:-10194275 | None:intergenic |
| AAGCATGGATAAAGTTTCAT+CGG | 0.592980 | 4.1:+10193615 | None:intergenic |
| GCGGTGTTGAAATGGAGTCT+AGG | 0.598414 | 4.1:+10194232 | MS.gene57288:CDS |
| CAGTTGGCTAGCCCATTCCT+CGG | 0.603223 | 4.1:-10194259 | None:intergenic |
| CTTCCGTGTCAAGATGATGA+TGG | 0.604349 | 4.1:+10193727 | MS.gene57288:CDS |
| TGTTGAAATGGAGTCTAGGA+AGG | 0.605706 | 4.1:+10194236 | MS.gene57288:CDS |
| ACAATGCTTCAATAATTCCA+GGG | 0.608618 | 4.1:-10194476 | None:intergenic |
| GTGTGAATAAACTATTTCCA+AGG | 0.609966 | 4.1:-10194148 | None:intergenic |
| TTTCCCACTTTAGCCAGTCA+CGG | 0.611995 | 4.1:+10194087 | MS.gene57288:CDS |
| ACAAAACTACCTGGCATGTG+GGG | 0.615879 | 4.1:+10194363 | MS.gene57288:CDS |
| GGTCAGGTTCTCCCTATCAG+TGG | 0.617990 | 4.1:+10193748 | MS.gene57288:CDS |
| ATGTCTGCTCTCATATGGAA+AGG | 0.618281 | 4.1:+10193838 | MS.gene57288:CDS |
| AATGGAGTCTAGGAAGGCCG+AGG | 0.620005 | 4.1:+10194242 | MS.gene57288:CDS |
| TCACCGTGACTGGCTAAAGT+GGG | 0.627571 | 4.1:-10194090 | None:intergenic |
| AAGGACTGAAGAATCGACGC+TGG | 0.632880 | 4.1:+10193857 | MS.gene57288:CDS |
| AAACTACCTGGCATGTGGGG+TGG | 0.640971 | 4.1:+10194366 | MS.gene57288:CDS |
| TGGTCTTTGGAACACAGCAA+TGG | 0.643301 | 4.1:+10193768 | MS.gene57288:CDS |
| GAATTTCTAACAAAACTACC+TGG | 0.643669 | 4.1:+10194354 | MS.gene57288:CDS |
| TCATCGGACTGTCCATACCC+AGG | 0.655137 | 4.1:+10193631 | MS.gene57288:CDS |
| AGATCCAAATACATGTCACA+AGG | 0.671859 | 4.1:+10194566 | MS.gene57288:CDS |
| TGACCATCATCATCTTGACA+CGG | 0.697231 | 4.1:-10193730 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAGGAATGTATATATTT+TGG | - | chr4.1:10193894-10193913 | None:intergenic | 15.0% |
| !! | TTTACCAATATGTTGATAGA+AGG | + | chr4.1:10194172-10194191 | MS.gene57288:CDS | 25.0% |
| !!! | TAATTGCTTTGCTTTTAAAC+CGG | + | chr4.1:10194305-10194324 | MS.gene57288:CDS | 25.0% |
| ACAATGCTTCAATAATTCCA+GGG | - | chr4.1:10194479-10194498 | None:intergenic | 30.0% | |
| ATGATATGAGCTGCATAATA+AGG | - | chr4.1:10193910-10193929 | None:intergenic | 30.0% | |
| GAATTTCTAACAAAACTACC+TGG | + | chr4.1:10194354-10194373 | MS.gene57288:CDS | 30.0% | |
| GTGTGAATAAACTATTTCCA+AGG | - | chr4.1:10194151-10194170 | None:intergenic | 30.0% | |
| TAGAAATTCTTGCTTGCATA+TGG | - | chr4.1:10194343-10194362 | None:intergenic | 30.0% | |
| TATTATGCAGCTCATATCAT+TGG | + | chr4.1:10193910-10193929 | MS.gene57288:CDS | 30.0% | |
| TTCTTCCATATTCATTGTGT+AGG | - | chr4.1:10193938-10193957 | None:intergenic | 30.0% | |
| ! | TTAGCCTTCTATCAACATAT+TGG | - | chr4.1:10194179-10194198 | None:intergenic | 30.0% |
| AATTCTTGCTTGCATATGGT+AGG | - | chr4.1:10194339-10194358 | None:intergenic | 35.0% | |
| ACAATTTGTCATCAGAAGCT+TGG | + | chr4.1:10194432-10194451 | MS.gene57288:CDS | 35.0% | |
| CACAATGCTTCAATAATTCC+AGG | - | chr4.1:10194480-10194499 | None:intergenic | 35.0% | |
| CATATGGTAGGAAGAAATTC+CGG | - | chr4.1:10194327-10194346 | None:intergenic | 35.0% | |
| GTTAATGAAAATTCACCAGC+TGG | + | chr4.1:10194393-10194412 | MS.gene57288:CDS | 35.0% | |
| TCTATGAATTCAGGGTCATT+CGG | - | chr4.1:10193799-10193818 | None:intergenic | 35.0% | |
| TGGTTCCTACACAATGAATA+TGG | + | chr4.1:10193930-10193949 | MS.gene57288:CDS | 35.0% | |
| TTCAGATGATTGGCAGTATA+TGG | + | chr4.1:10194515-10194534 | MS.gene57288:CDS | 35.0% | |
| ! | ATGCTTCTTTTGTGTCATGA+AGG | + | chr4.1:10193654-10193673 | MS.gene57288:CDS | 35.0% |
| ! | TGGCTATTGATTGTCTTCTA+TGG | + | chr4.1:10194535-10194554 | MS.gene57288:CDS | 35.0% |
| AACAAAACTACCTGGCATGT+GGG | + | chr4.1:10194362-10194381 | MS.gene57288:CDS | 40.0% | |
| AATGCATGTCTGCTCTCATA+TGG | + | chr4.1:10193833-10193852 | MS.gene57288:CDS | 40.0% | |
| ATGTCTGCTCTCATATGGAA+AGG | + | chr4.1:10193838-10193857 | MS.gene57288:CDS | 40.0% | |
| ATTCCCAGCTCTATGAATTC+AGG | - | chr4.1:10193808-10193827 | None:intergenic | 40.0% | |
| CCAAGGAACTCATTGCTAAT+TGG | - | chr4.1:10194134-10194153 | None:intergenic | 40.0% | |
| CCAATTAGCAATGAGTTCCT+TGG | + | chr4.1:10194131-10194150 | MS.gene57288:CDS | 40.0% | |
| CCTCTTAGAAGCTCAACTAA+AGG | - | chr4.1:10193997-10194016 | None:intergenic | 40.0% | |
| CCTTTAGTTGAGCTTCTAAG+AGG | + | chr4.1:10193994-10194013 | MS.gene57288:CDS | 40.0% | |
| CTTAATAAGCCAATACCAGC+TGG | - | chr4.1:10194411-10194430 | None:intergenic | 40.0% | |
| CTTAGAAGCTCAACTAAAGG+AGG | - | chr4.1:10193994-10194013 | None:intergenic | 40.0% | |
| GAAAATTCACCAGCTGGTAT+TGG | + | chr4.1:10194399-10194418 | MS.gene57288:CDS | 40.0% | |
| TAACAAAACTACCTGGCATG+TGG | + | chr4.1:10194361-10194380 | MS.gene57288:CDS | 40.0% | |
| TGACCATCATCATCTTGACA+CGG | - | chr4.1:10193733-10193752 | None:intergenic | 40.0% | |
| TGTTCCAAAGACCACTGATA+GGG | - | chr4.1:10193762-10193781 | None:intergenic | 40.0% | |
| TGTTGAAATGGAGTCTAGGA+AGG | + | chr4.1:10194236-10194255 | MS.gene57288:CDS | 40.0% | |
| TTCCCAGCTCTATGAATTCA+GGG | - | chr4.1:10193807-10193826 | None:intergenic | 40.0% | |
| TTGTCATCAGAAGCTTGGTA+GGG | + | chr4.1:10194437-10194456 | MS.gene57288:CDS | 40.0% | |
| TTTGTCATCAGAAGCTTGGT+AGG | + | chr4.1:10194436-10194455 | MS.gene57288:CDS | 40.0% | |
| ! | TAGTTGAGCTTCTAAGAGGT+AGG | + | chr4.1:10193998-10194017 | MS.gene57288:CDS | 40.0% |
| ! | TCTAAGAGGTAGGTTGACTT+GGG | + | chr4.1:10194008-10194027 | MS.gene57288:CDS | 40.0% |
| ! | TTCTAAGAGGTAGGTTGACT+TGG | + | chr4.1:10194007-10194026 | MS.gene57288:CDS | 40.0% |
| !! | ATGACACAAAAGAAGCATCC+TGG | - | chr4.1:10193652-10193671 | None:intergenic | 40.0% |
| !! | TGACACAAAAGAAGCATCCT+GGG | - | chr4.1:10193651-10193670 | None:intergenic | 40.0% |
| ACAAAACTACCTGGCATGTG+GGG | + | chr4.1:10194363-10194382 | MS.gene57288:CDS | 45.0% | |
| AGGGTAGCAGTTAGAGCTTT+GGG | + | chr4.1:10194039-10194058 | MS.gene57288:CDS | 45.0% | |
| CACTGTGATCTTCTTACACG+CGG | + | chr4.1:10194204-10194223 | MS.gene57288:CDS | 45.0% | |
| CTTCCGTGTCAAGATGATGA+TGG | + | chr4.1:10193727-10193746 | MS.gene57288:CDS | 45.0% | |
| GAAGAGACCAACATTGCAGT+TGG | - | chr4.1:10194278-10194297 | None:intergenic | 45.0% | |
| GACCCTGAATTCATAGAGCT+GGG | + | chr4.1:10193802-10193821 | MS.gene57288:CDS | 45.0% | |
| GTGTTCCAAAGACCACTGAT+AGG | - | chr4.1:10193763-10193782 | None:intergenic | 45.0% | |
| TGACCCTGAATTCATAGAGC+TGG | + | chr4.1:10193801-10193820 | MS.gene57288:CDS | 45.0% | |
| TGTCATCAGAAGCTTGGTAG+GGG | + | chr4.1:10194438-10194457 | MS.gene57288:CDS | 45.0% | |
| TTCTCCCTATCAGTGGTCTT+TGG | + | chr4.1:10193755-10193774 | MS.gene57288:CDS | 45.0% | |
| TTGCTCGCTCTTCAGATGAT+TGG | + | chr4.1:10194505-10194524 | MS.gene57288:CDS | 45.0% | |
| TTTCCCACTTTAGCCAGTCA+CGG | + | chr4.1:10194087-10194106 | MS.gene57288:CDS | 45.0% | |
| !! | CAAAAGAAGCATCCTGGGTA+TGG | - | chr4.1:10193646-10193665 | None:intergenic | 45.0% |
| !! | GTGTCAAGATGATGATGGTC+AGG | + | chr4.1:10193732-10193751 | MS.gene57288:CDS | 45.0% |
| !! | TGGTCTTTGGAACACAGCAA+TGG | + | chr4.1:10193768-10193787 | MS.gene57288:CDS | 45.0% |
| AAGGACTGAAGAATCGACGC+TGG | + | chr4.1:10193857-10193876 | MS.gene57288:CDS | 50.0% | |
| ACACTTGCTCTGCGTTTGCT+TGG | - | chr4.1:10193688-10193707 | None:intergenic | 50.0% | |
| ATTCCAGGGCAACTAGCAAC+AGG | - | chr4.1:10194465-10194484 | None:intergenic | 50.0% | |
| CTCGAGAATTTCACCGTGAC+TGG | - | chr4.1:10194103-10194122 | None:intergenic | 50.0% | |
| GAGGGTAGCAGTTAGAGCTT+TGG | + | chr4.1:10194038-10194057 | MS.gene57288:CDS | 50.0% | |
| GATCTTCTTACACGCGGCAT+GGG | + | chr4.1:10194210-10194229 | MS.gene57288:CDS | 50.0% | |
| GCAGAAAGTTCTGTGCATGC+TGG | + | chr4.1:10193961-10193980 | MS.gene57288:CDS | 50.0% | |
| TGATCTTCTTACACGCGGCA+TGG | + | chr4.1:10194209-10194228 | MS.gene57288:CDS | 50.0% | |
| ! | GCGGTGTTGAAATGGAGTCT+AGG | + | chr4.1:10194232-10194251 | MS.gene57288:CDS | 50.0% |
| ! | GGCTAAAGTGGGAAAAGTGC+TGG | - | chr4.1:10194082-10194101 | None:intergenic | 50.0% |
| ! | TCACCGTGACTGGCTAAAGT+GGG | - | chr4.1:10194093-10194112 | None:intergenic | 50.0% |
| ! | TTCACCGTGACTGGCTAAAG+TGG | - | chr4.1:10194094-10194113 | None:intergenic | 50.0% |
| !! | GTTGACTTGGGTTGAGCAGA+GGG | + | chr4.1:10194020-10194039 | MS.gene57288:CDS | 50.0% |
| AAACTACCTGGCATGTGGGG+TGG | + | chr4.1:10194366-10194385 | MS.gene57288:CDS | 55.0% | |
| AATGGAGTCTAGGAAGGCCG+AGG | + | chr4.1:10194242-10194261 | MS.gene57288:CDS | 55.0% | |
| AGTCTAGGAAGGCCGAGGAA+TGG | + | chr4.1:10194247-10194266 | MS.gene57288:CDS | 55.0% | |
| GGTCAGGTTCTCCCTATCAG+TGG | + | chr4.1:10193748-10193767 | MS.gene57288:CDS | 55.0% | |
| GTCTAGGAAGGCCGAGGAAT+GGG | + | chr4.1:10194248-10194267 | MS.gene57288:CDS | 55.0% | |
| TCATCGGACTGTCCATACCC+AGG | + | chr4.1:10193631-10193650 | MS.gene57288:CDS | 55.0% | |
| ! | CAGTTGGCTAGCCCATTCCT+CGG | - | chr4.1:10194262-10194281 | None:intergenic | 55.0% |
| !! | GGGCTAGCCAACTGCAATGT+TGG | + | chr4.1:10194268-10194287 | MS.gene57288:CDS | 55.0% |
| !! | GGTTGACTTGGGTTGAGCAG+AGG | + | chr4.1:10194019-10194038 | MS.gene57288:CDS | 55.0% |
| ACAAGACCACCCCACATGCC+AGG | - | chr4.1:10194375-10194394 | None:intergenic | 60.0% | |
| CTTCTTACACGCGGCATGGG+CGG | + | chr4.1:10194213-10194232 | MS.gene57288:CDS | 60.0% | |
| GGACCTGTTGCTAGTTGCCC+TGG | + | chr4.1:10194459-10194478 | MS.gene57288:CDS | 60.0% | |
| ! | CGGCATGGGCGGTGTTGAAA+TGG | + | chr4.1:10194224-10194243 | MS.gene57288:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 10193619 | 10194587 | 10193619 | ID=MS.gene57288 |
| chr4.1 | mRNA | 10193619 | 10194587 | 10193619 | ID=MS.gene57288.t1;Parent=MS.gene57288 |
| chr4.1 | exon | 10193619 | 10194587 | 10193619 | ID=MS.gene57288.t1.exon1;Parent=MS.gene57288.t1 |
| chr4.1 | CDS | 10193619 | 10194587 | 10193619 | ID=cds.MS.gene57288.t1;Parent=MS.gene57288.t1 |
| Gene Sequence |
| Protein sequence |
