Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57879.t1 | PNY04437.1 | 47.1 | 573 | 258 | 10 | 46 | 587 | 23 | 581 | 1.90E-127 | 466.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57879.t1 | Q9C9C0 | 43.1 | 531 | 266 | 8 | 80 | 587 | 90 | 607 | 6.3e-108 | 392.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57879.t1 | A0A2K3NN31 | 47.1 | 573 | 258 | 10 | 46 | 587 | 23 | 581 | 1.4e-127 | 466.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052447 | MS.gene57879 | 0.813416 | 2.59E-51 | -1.69E-46 |
| MS.gene060134 | MS.gene57879 | 0.980495 | 2.37E-150 | -1.69E-46 |
| MS.gene060135 | MS.gene57879 | 0.995759 | 1.39E-219 | -1.69E-46 |
| MS.gene060332 | MS.gene57879 | 0.896332 | 4.08E-76 | -1.69E-46 |
| MS.gene060334 | MS.gene57879 | 0.808371 | 3.20E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57879.t1 | MTR_4g112860 | 45.392 | 586 | 271 | 11 | 36 | 587 | 19 | 589 | 1.18e-153 | 456 |
| MS.gene57879.t1 | MTR_2g058970 | 44.444 | 531 | 259 | 7 | 80 | 587 | 84 | 601 | 8.74e-146 | 436 |
| MS.gene57879.t1 | MTR_4g112860 | 42.857 | 532 | 255 | 11 | 36 | 533 | 19 | 535 | 4.22e-123 | 375 |
| MS.gene57879.t1 | MTR_4g112820 | 38.241 | 557 | 231 | 12 | 56 | 586 | 16 | 485 | 5.56e-104 | 323 |
| MS.gene57879.t1 | MTR_4g112860 | 41.365 | 498 | 237 | 12 | 36 | 499 | 19 | 495 | 1.02e-101 | 317 |
| MS.gene57879.t1 | MTR_4g123500 | 41.379 | 464 | 237 | 8 | 131 | 587 | 5 | 440 | 7.49e-98 | 306 |
| MS.gene57879.t1 | MTR_4g112860 | 38.987 | 395 | 192 | 11 | 36 | 396 | 19 | 398 | 3.28e-68 | 226 |
| MS.gene57879.t1 | MTR_5g025810 | 32.781 | 543 | 206 | 15 | 56 | 587 | 11 | 405 | 4.23e-67 | 228 |
| MS.gene57879.t1 | MTR_4g130360 | 35.054 | 465 | 203 | 15 | 4 | 451 | 6 | 388 | 3.39e-65 | 221 |
| MS.gene57879.t1 | MTR_4g130360 | 62.712 | 59 | 20 | 1 | 532 | 588 | 388 | 446 | 5.50e-14 | 75.1 |
| MS.gene57879.t1 | MTR_4g130550 | 63.889 | 180 | 53 | 2 | 381 | 558 | 64 | 233 | 2.95e-61 | 203 |
| MS.gene57879.t1 | MTR_4g130550 | 82.051 | 39 | 7 | 0 | 245 | 283 | 32 | 70 | 8.24e-15 | 74.7 |
| MS.gene57879.t1 | MTR_4g114810 | 32.544 | 507 | 192 | 14 | 86 | 588 | 55 | 415 | 4.01e-61 | 210 |
| MS.gene57879.t1 | MTR_8g022470 | 38.012 | 342 | 169 | 9 | 253 | 587 | 8 | 313 | 5.83e-54 | 186 |
| MS.gene57879.t1 | MTR_8g022500 | 31.456 | 515 | 197 | 15 | 80 | 587 | 60 | 425 | 2.41e-51 | 184 |
| MS.gene57879.t1 | MTR_4g134260 | 41.935 | 248 | 122 | 3 | 300 | 543 | 125 | 354 | 2.78e-49 | 177 |
| MS.gene57879.t1 | MTR_5g082990 | 31.768 | 362 | 183 | 10 | 204 | 558 | 5 | 309 | 3.25e-41 | 153 |
| MS.gene57879.t1 | MTR_4g133130 | 37.555 | 229 | 90 | 6 | 360 | 587 | 49 | 225 | 2.34e-30 | 125 |
| MS.gene57879.t1 | MTR_5g083090 | 43.220 | 118 | 49 | 5 | 105 | 219 | 4 | 106 | 4.11e-20 | 87.8 |
| MS.gene57879.t1 | MTR_5g083100 | 53.846 | 65 | 27 | 1 | 522 | 583 | 176 | 240 | 5.14e-14 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57879.t1 | AT1G73990 | 43.126 | 531 | 266 | 8 | 80 | 587 | 90 | 607 | 5.92e-133 | 404 |
| MS.gene57879.t1 | AT1G73990 | 40.461 | 477 | 248 | 8 | 80 | 533 | 90 | 553 | 2.30e-105 | 330 |
Find 118 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAAATATATGAATATTT+TGG | 0.176804 | 8.4:+4155044 | MS.gene57879:CDS |
| GCTGAGAAACTTACTATTAT+AGG | 0.182398 | 8.4:+4154987 | MS.gene57879:CDS |
| GTTTGTGGAGCCATCGATTA+TGG | 0.236591 | 8.4:+4154732 | MS.gene57879:CDS |
| GGATGGTGACAAGATTATTA+TGG | 0.245096 | 8.4:+4154602 | MS.gene57879:CDS |
| TGGATTAGCTTCAGGGTTAA+TGG | 0.250434 | 8.4:+4154581 | MS.gene57879:CDS |
| AAGATCTAATTGGCTTGATA+TGG | 0.258838 | 8.4:+4154470 | MS.gene57879:CDS |
| TACTAAGAGATCTTTGAAAA+AGG | 0.265162 | 8.4:+4154338 | MS.gene57879:CDS |
| TATTGTTGGCTGATCAATTA+TGG | 0.276033 | 8.4:+4154859 | MS.gene57879:CDS |
| ATTGTTCATTGCTGCCTTAC+CGG | 0.295628 | 8.4:-4155264 | None:intergenic |
| GAGAGTTCAACCAGATTAAT+AGG | 0.301916 | 8.4:-4155365 | None:intergenic |
| TTCGATTTCGTTCCGCTCTC+TGG | 0.315989 | 8.4:+4153883 | MS.gene57879:CDS |
| CTTACTATTATAGGTTCAAT+TGG | 0.329531 | 8.4:+4154996 | MS.gene57879:CDS |
| AGGCTAATATACCTCAAAAT+AGG | 0.333847 | 8.4:+4155342 | MS.gene57879:CDS |
| AGGTATATTAGCCTTCAATT+TGG | 0.345021 | 8.4:-4155333 | None:intergenic |
| ATAGATTGTGGATTAGCTTC+AGG | 0.355026 | 8.4:+4154573 | MS.gene57879:CDS |
| ATCGGTATTATTAGAGTTTG+TGG | 0.362941 | 8.4:+4154717 | MS.gene57879:CDS |
| ATGGGTCTCAGTAAGAGATT+TGG | 0.365012 | 8.4:+4154621 | MS.gene57879:CDS |
| TCAAAATAGGCCTATTAATC+TGG | 0.371007 | 8.4:+4155355 | MS.gene57879:CDS |
| TTCTCATCCTCTTCATCTTA+CGG | 0.376793 | 8.4:+4153699 | MS.gene57879:CDS |
| ATATTCAATTTCAAGAAATC+TGG | 0.381689 | 8.4:+4154159 | MS.gene57879:CDS |
| AGATTGCCCAAGGGCGACTT+TGG | 0.388070 | 8.4:+4155240 | MS.gene57879:CDS |
| AAGAAAGAGGTTCTTTCTAA+AGG | 0.390182 | 8.4:+4155071 | MS.gene57879:CDS |
| TTGATATGGTTTCTTGTTCA+AGG | 0.394731 | 8.4:+4154484 | MS.gene57879:CDS |
| AGGATGATATAAGATCTAAT+TGG | 0.395182 | 8.4:+4154460 | MS.gene57879:CDS |
| CGATTATGGAGGTGATATAA+TGG | 0.397941 | 8.4:+4154746 | MS.gene57879:CDS |
| CTGTTGGTATATCAAATAGT+AGG | 0.400153 | 8.4:+4154688 | MS.gene57879:CDS |
| TACCGGTCCAAAGTCGCCCT+TGG | 0.405887 | 8.4:-4155247 | None:intergenic |
| GTGGGCAAATATAAAATTGC+AGG | 0.407744 | 8.4:+4154396 | MS.gene57879:CDS |
| TTGAGGGGTTTGTGAATTTG+AGG | 0.427452 | 8.4:-4153727 | None:intergenic |
| GATGGTGACAAGATTATTAT+GGG | 0.430367 | 8.4:+4154603 | MS.gene57879:CDS |
| ATGTTCCCATTCGATAAGAT+TGG | 0.439661 | 8.4:-4154367 | None:intergenic |
| ACCTGAGAGTCGGTGCCAAC+TGG | 0.441099 | 8.4:-4154009 | None:intergenic |
| GGTGCATATTTGATTGCAAC+TGG | 0.441687 | 8.4:+4154948 | MS.gene57879:CDS |
| CTCATCTACACTTAATGATC+TGG | 0.441800 | 8.4:-4155210 | None:intergenic |
| TAGATTGTGGATTAGCTTCA+GGG | 0.444789 | 8.4:+4154574 | MS.gene57879:CDS |
| TATTTGATTGCAACTGGAGC+AGG | 0.455192 | 8.4:+4154954 | MS.gene57879:CDS |
| GTAAGGCAGCAATGAACAAT+AGG | 0.470115 | 8.4:+4155267 | MS.gene57879:CDS |
| ACCGGTCCAAAGTCGCCCTT+GGG | 0.473423 | 8.4:-4155246 | None:intergenic |
| ACCAGTTGGCACCGACTCTC+AGG | 0.474513 | 8.4:+4154008 | MS.gene57879:CDS |
| TGAGGGGTTTGTGAATTTGA+GGG | 0.479572 | 8.4:-4153726 | None:intergenic |
| TATCTGTCTTCTAATTTCAT+CGG | 0.482157 | 8.4:-4154139 | None:intergenic |
| AACAGTGTTGATTATTCGAC+CGG | 0.483950 | 8.4:+4153856 | MS.gene57879:CDS |
| GATGAGAAATAAAGTGTGAA+TGG | 0.486767 | 8.4:-4153684 | None:intergenic |
| TCCAGGAGGGAATGTATTGT+TGG | 0.487832 | 8.4:+4154845 | MS.gene57879:CDS |
| GCAGGCTTAAATTCAGATGA+AGG | 0.489639 | 8.4:+4154414 | MS.gene57879:CDS |
| TCAAATAGTAGGGAAAATAT+CGG | 0.490155 | 8.4:+4154699 | MS.gene57879:CDS |
| ATTGAGAATATCCGTAGGGT+TGG | 0.499628 | 8.4:+4154780 | MS.gene57879:CDS |
| ACTGGCTGCCTCATCTGATA+AGG | 0.501161 | 8.4:-4154925 | None:intergenic |
| TTGAGAATATCCGTAGGGTT+GGG | 0.501994 | 8.4:+4154781 | MS.gene57879:CDS |
| GAGGGGTTTGTGAATTTGAG+GGG | 0.502643 | 8.4:-4153725 | None:intergenic |
| GTGTGAATGGTTTGCGATGG+AGG | 0.503001 | 8.4:-4153671 | None:intergenic |
| GCCTCGGAGCGTGTCGAACA+TGG | 0.517250 | 8.4:+4153943 | MS.gene57879:CDS |
| GCCCAAGGGCGACTTTGGAC+CGG | 0.519709 | 8.4:+4155245 | MS.gene57879:CDS |
| GAATGTGAATGGTCTGTGAA+TGG | 0.524062 | 8.4:-4153800 | None:intergenic |
| CTGCACACCATCTTCGATTG+TGG | 0.524754 | 8.4:+4153756 | MS.gene57879:CDS |
| TCAACACTGTTACCTTTACC+TGG | 0.525067 | 8.4:-4153844 | None:intergenic |
| AACCTCTACGATCTCTTCTC+CGG | 0.527699 | 8.4:+4154293 | MS.gene57879:CDS |
| CATTCTTGCATCTAAGATAC+CGG | 0.530035 | 8.4:+4154893 | MS.gene57879:CDS |
| TGCAATCAAATATGCACCAC+TGG | 0.530834 | 8.4:-4154943 | None:intergenic |
| TGTTGCTATAGCCAAATTGA+AGG | 0.532127 | 8.4:+4155322 | MS.gene57879:CDS |
| CTTAAATTCAGATGAAGGAT+GGG | 0.532180 | 8.4:+4154419 | MS.gene57879:CDS |
| ATTACACCAATCTTATCGAA+TGG | 0.535345 | 8.4:+4154361 | MS.gene57879:CDS |
| GGAAATGATGAAGGCAATTG+AGG | 0.537388 | 8.4:+4154440 | MS.gene57879:CDS |
| TGGGTCGAAAAGATTTAAAA+CGG | 0.537784 | 8.4:-4153780 | None:intergenic |
| TTACACCAATCTTATCGAAT+GGG | 0.537864 | 8.4:+4154362 | MS.gene57879:CDS |
| ACCTTTACCTGGAGTAGAAG+TGG | 0.539130 | 8.4:-4153833 | None:intergenic |
| AGGGCGACTTTGGACCGGTA+AGG | 0.542327 | 8.4:+4155250 | MS.gene57879:CDS |
| GCTTAAATTCAGATGAAGGA+TGG | 0.545084 | 8.4:+4154418 | MS.gene57879:CDS |
| ATGGTGTGCAGTGGAATTTG+AGG | 0.545985 | 8.4:-4153744 | None:intergenic |
| TTAGTAAGAGTAGTTGTCTC+CGG | 0.546132 | 8.4:-4154312 | None:intergenic |
| GAAGAGATCGTAGAGGTTGG+AGG | 0.546294 | 8.4:-4154288 | None:intergenic |
| GCCAACAATACATTCCCTCC+TGG | 0.546346 | 8.4:-4154846 | None:intergenic |
| TTGATGCGCTCTTCTTCATG+TGG | 0.546362 | 8.4:-4155137 | None:intergenic |
| TGGTGTGCAGTGGAATTTGA+GGG | 0.550066 | 8.4:-4153743 | None:intergenic |
| GGAGAAGAGATCGTAGAGGT+TGG | 0.556545 | 8.4:-4154291 | None:intergenic |
| TCCACTTCTACTCCAGGTAA+AGG | 0.557566 | 8.4:+4153832 | MS.gene57879:CDS |
| AAACGGTCCACAATCGAAGA+TGG | 0.562971 | 8.4:-4153763 | None:intergenic |
| GATGAAAAGTAGAATGTGAA+TGG | 0.566518 | 8.4:-4153811 | None:intergenic |
| GTTTGAAGGCTATAATCCTA+CGG | 0.566827 | 8.4:+4154814 | MS.gene57879:CDS |
| TGTTGGTATATCAAATAGTA+GGG | 0.568964 | 8.4:+4154689 | MS.gene57879:CDS |
| TGAAGGATGGGAAATGATGA+AGG | 0.569473 | 8.4:+4154431 | MS.gene57879:CDS |
| GGCAGCAATGAACAATAGGT+TGG | 0.572321 | 8.4:+4155271 | MS.gene57879:CDS |
| CTCTCAAAACCCCAAAATGT+AGG | 0.578078 | 8.4:-4154204 | None:intergenic |
| AATGTGAATGGTCTGTGAAT+GGG | 0.582701 | 8.4:-4153799 | None:intergenic |
| CGGAACGAAATCGAAATCTC+CGG | 0.584439 | 8.4:-4153875 | None:intergenic |
| AATAGGTTGGTTGATGCGCT+AGG | 0.587278 | 8.4:+4155284 | MS.gene57879:CDS |
| TCTGATAAGGAAGAAATGAC+CGG | 0.587654 | 8.4:-4154912 | None:intergenic |
| CAGATCATTAAGTGTAGATG+AGG | 0.588798 | 8.4:+4155211 | MS.gene57879:CDS |
| GGGGTTTCCGTAAGATGAAG+AGG | 0.593634 | 8.4:-4153706 | None:intergenic |
| CATTTCTTCCTTATCAGATG+AGG | 0.593943 | 8.4:+4154917 | MS.gene57879:CDS |
| GATCAAGACTCTGTTAGCCT+CGG | 0.596334 | 8.4:+4153927 | MS.gene57879:CDS |
| CAATCGAAGATGGTGTGCAG+TGG | 0.598273 | 8.4:-4153753 | None:intergenic |
| TTAGCTTCAGGGTTAATGGA+TGG | 0.600853 | 8.4:+4154585 | MS.gene57879:CDS |
| ATCCTACGGATTGACAGTCC+AGG | 0.601328 | 8.4:+4154828 | MS.gene57879:CDS |
| TTTGATTGAGAATATCCGTA+GGG | 0.609950 | 8.4:+4154776 | MS.gene57879:CDS |
| TATATCACCTCCATAATCGA+TGG | 0.612527 | 8.4:-4154742 | None:intergenic |
| GAGGTTGAAGAGATTGCCCA+AGG | 0.622061 | 8.4:+4155230 | MS.gene57879:CDS |
| CTCCTGGACTGTCAATCCGT+AGG | 0.622715 | 8.4:-4154830 | None:intergenic |
| CTTTGTAGACAAGGTAGCGA+TGG | 0.623654 | 8.4:+4155187 | MS.gene57879:CDS |
| AACTATTTGAGAATGATCAT+CGG | 0.625097 | 8.4:+4155105 | MS.gene57879:CDS |
| GAATGGGAACATAAGACAGT+GGG | 0.628199 | 8.4:+4154378 | MS.gene57879:CDS |
| ATTTGATTGAGAATATCCGT+AGG | 0.630652 | 8.4:+4154775 | MS.gene57879:CDS |
| TTACAAACACTTTGTAGACA+AGG | 0.630675 | 8.4:+4155178 | MS.gene57879:CDS |
| AAAGTGTGAATGGTTTGCGA+TGG | 0.637871 | 8.4:-4153674 | None:intergenic |
| GGTGTGCAGTGGAATTTGAG+GGG | 0.647885 | 8.4:-4153742 | None:intergenic |
| AGGTTGGTTGATGCGCTAGG+TGG | 0.658606 | 8.4:+4155287 | MS.gene57879:CDS |
| TGTGGAGCCATCGATTATGG+AGG | 0.660667 | 8.4:+4154735 | MS.gene57879:CDS |
| TACGGATTGACAGTCCAGGA+GGG | 0.661634 | 8.4:+4154832 | MS.gene57879:CDS |
| TTATCAGATGAGGCAGCCAG+TGG | 0.663360 | 8.4:+4154927 | MS.gene57879:CDS |
| TAAAGACAATACCTGAGAGT+CGG | 0.663419 | 8.4:-4154019 | None:intergenic |
| CTACGGATTGACAGTCCAGG+AGG | 0.672726 | 8.4:+4154831 | MS.gene57879:CDS |
| AGGTTGAAGAGATTGCCCAA+GGG | 0.677412 | 8.4:+4155231 | MS.gene57879:CDS |
| CGAATGGGAACATAAGACAG+TGG | 0.682407 | 8.4:+4154377 | MS.gene57879:CDS |
| ACCATGTTCGACACGCTCCG+AGG | 0.691925 | 8.4:-4153944 | None:intergenic |
| ACAAATAGAGCAGACACGCG+AGG | 0.694628 | 8.4:-4154081 | None:intergenic |
| TATTTCTTAAAACCAGAGAG+CGG | 0.701941 | 8.4:-4153895 | None:intergenic |
| CTCCGGAGAAGAGATCGTAG+AGG | 0.751065 | 8.4:-4154295 | None:intergenic |
| AGACACGCGAGGATCATATG+CGG | 0.776119 | 8.4:-4154070 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAAAATATATGAATATTT+TGG | + | chr8.4:4155044-4155063 | MS.gene57879:CDS | 10.0% |
| !!! | ATTTTCATGAAACAAAAAAT+TGG | + | chr8.4:4154550-4154569 | MS.gene57879:CDS | 15.0% |
| !! | ATATTCAATTTCAAGAAATC+TGG | + | chr8.4:4154159-4154178 | MS.gene57879:CDS | 20.0% |
| !! | TTCAAGGAAAATATCAAAAA+AGG | + | chr8.4:4154500-4154519 | MS.gene57879:CDS | 20.0% |
| !!! | ATATTTTGGTTTTAAGAAAG+AGG | + | chr8.4:4155058-4155077 | MS.gene57879:CDS | 20.0% |
| !!! | ATATTTTTCTGTACATGTTA+CGG | - | chr8.4:4153642-4153661 | None:intergenic | 20.0% |
| ! | AACTATTTGAGAATGATCAT+CGG | + | chr8.4:4155105-4155124 | MS.gene57879:CDS | 25.0% |
| ! | ACAAAAAATTGGATAGATTG+TGG | + | chr8.4:4154561-4154580 | MS.gene57879:CDS | 25.0% |
| ! | AGGATGATATAAGATCTAAT+TGG | + | chr8.4:4154460-4154479 | MS.gene57879:CDS | 25.0% |
| ! | CTTACTATTATAGGTTCAAT+TGG | + | chr8.4:4154996-4155015 | MS.gene57879:CDS | 25.0% |
| ! | TATCTGTCTTCTAATTTCAT+CGG | - | chr8.4:4154142-4154161 | None:intergenic | 25.0% |
| ! | TCAAATAGTAGGGAAAATAT+CGG | + | chr8.4:4154699-4154718 | MS.gene57879:CDS | 25.0% |
| ! | TGTTGGTATATCAAATAGTA+GGG | + | chr8.4:4154689-4154708 | MS.gene57879:CDS | 25.0% |
| !! | TACTAAGAGATCTTTGAAAA+AGG | + | chr8.4:4154338-4154357 | MS.gene57879:CDS | 25.0% |
| !!! | CTCTGGTTTTAAGAAATATA+TGG | + | chr8.4:4153900-4153919 | MS.gene57879:CDS | 25.0% |
| !!! | TAGTGTTTTGAGAATCAATT+TGG | + | chr8.4:4153966-4153985 | MS.gene57879:CDS | 25.0% |
| !!! | TATATAGATGCTTTTGATTG+TGG | + | chr8.4:4154105-4154124 | MS.gene57879:CDS | 25.0% |
| AAGAAAGAGGTTCTTTCTAA+AGG | + | chr8.4:4155071-4155090 | MS.gene57879:CDS | 30.0% | |
| AGGCTAATATACCTCAAAAT+AGG | + | chr8.4:4155342-4155361 | MS.gene57879:CDS | 30.0% | |
| ATCGGTATTATTAGAGTTTG+TGG | + | chr8.4:4154717-4154736 | MS.gene57879:CDS | 30.0% | |
| ATTACACCAATCTTATCGAA+TGG | + | chr8.4:4154361-4154380 | MS.gene57879:CDS | 30.0% | |
| ATTTGATTGAGAATATCCGT+AGG | + | chr8.4:4154775-4154794 | MS.gene57879:CDS | 30.0% | |
| CTGTTGGTATATCAAATAGT+AGG | + | chr8.4:4154688-4154707 | MS.gene57879:CDS | 30.0% | |
| CTTAAATTCAGATGAAGGAT+GGG | + | chr8.4:4154419-4154438 | MS.gene57879:CDS | 30.0% | |
| GATGAAAAGTAGAATGTGAA+TGG | - | chr8.4:4153814-4153833 | None:intergenic | 30.0% | |
| GATGAGAAATAAAGTGTGAA+TGG | - | chr8.4:4153687-4153706 | None:intergenic | 30.0% | |
| GATGGTGACAAGATTATTAT+GGG | + | chr8.4:4154603-4154622 | MS.gene57879:CDS | 30.0% | |
| GCTGAGAAACTTACTATTAT+AGG | + | chr8.4:4154987-4155006 | MS.gene57879:CDS | 30.0% | |
| TATTTCTTAAAACCAGAGAG+CGG | - | chr8.4:4153898-4153917 | None:intergenic | 30.0% | |
| TCAAAATAGGCCTATTAATC+TGG | + | chr8.4:4155355-4155374 | MS.gene57879:CDS | 30.0% | |
| TGGGTCGAAAAGATTTAAAA+CGG | - | chr8.4:4153783-4153802 | None:intergenic | 30.0% | |
| TTACAAACACTTTGTAGACA+AGG | + | chr8.4:4155178-4155197 | MS.gene57879:CDS | 30.0% | |
| TTACACCAATCTTATCGAAT+GGG | + | chr8.4:4154362-4154381 | MS.gene57879:CDS | 30.0% | |
| TTGATATGGTTTCTTGTTCA+AGG | + | chr8.4:4154484-4154503 | MS.gene57879:CDS | 30.0% | |
| TTTGATTGAGAATATCCGTA+GGG | + | chr8.4:4154776-4154795 | MS.gene57879:CDS | 30.0% | |
| ! | AGATTAATAGGCCTATTTTG+AGG | - | chr8.4:4155356-4155375 | None:intergenic | 30.0% |
| ! | ATAAGATTTTCGCTTAGTTG+AGG | - | chr8.4:4154045-4154064 | None:intergenic | 30.0% |
| ! | TATTGTTGGCTGATCAATTA+TGG | + | chr8.4:4154859-4154878 | MS.gene57879:CDS | 30.0% |
| ! | TGCTTTTATGCCTACATTTT+GGG | + | chr8.4:4154194-4154213 | MS.gene57879:CDS | 30.0% |
| !! | AAGATCTAATTGGCTTGATA+TGG | + | chr8.4:4154470-4154489 | MS.gene57879:CDS | 30.0% |
| !! | AGGTATATTAGCCTTCAATT+TGG | - | chr8.4:4155336-4155355 | None:intergenic | 30.0% |
| !! | TTGCTTTTATGCCTACATTT+TGG | + | chr8.4:4154193-4154212 | MS.gene57879:CDS | 30.0% |
| !!! | AAGGACCTTCTAACTTTTTT+CGG | + | chr8.4:4154519-4154538 | MS.gene57879:CDS | 30.0% |
| !!! | GAATATATTTTGAAGTCGAG+CGG | - | chr8.4:4154651-4154670 | None:intergenic | 30.0% |
| !!! | GTTTTGAGAATCAATTTGGA+AGG | + | chr8.4:4153970-4153989 | MS.gene57879:CDS | 30.0% |
| AATGTGAATGGTCTGTGAAT+GGG | - | chr8.4:4153802-4153821 | None:intergenic | 35.0% | |
| ATGTTCCCATTCGATAAGAT+TGG | - | chr8.4:4154370-4154389 | None:intergenic | 35.0% | |
| CACTACCGAAAAAAGTTAGA+AGG | - | chr8.4:4154527-4154546 | None:intergenic | 35.0% | |
| CAGATCATTAAGTGTAGATG+AGG | + | chr8.4:4155211-4155230 | MS.gene57879:CDS | 35.0% | |
| CATTTCTTCCTTATCAGATG+AGG | + | chr8.4:4154917-4154936 | MS.gene57879:CDS | 35.0% | |
| CGATTATGGAGGTGATATAA+TGG | + | chr8.4:4154746-4154765 | MS.gene57879:CDS | 35.0% | |
| CTCATCTACACTTAATGATC+TGG | - | chr8.4:4155213-4155232 | None:intergenic | 35.0% | |
| GAGAGTTCAACCAGATTAAT+AGG | - | chr8.4:4155368-4155387 | None:intergenic | 35.0% | |
| GCTTAAATTCAGATGAAGGA+TGG | + | chr8.4:4154418-4154437 | MS.gene57879:CDS | 35.0% | |
| GGATGGTGACAAGATTATTA+TGG | + | chr8.4:4154602-4154621 | MS.gene57879:CDS | 35.0% | |
| GTGGGCAAATATAAAATTGC+AGG | + | chr8.4:4154396-4154415 | MS.gene57879:CDS | 35.0% | |
| GTTTGAAGGCTATAATCCTA+CGG | + | chr8.4:4154814-4154833 | MS.gene57879:CDS | 35.0% | |
| TAAAGACAATACCTGAGAGT+CGG | - | chr8.4:4154022-4154041 | None:intergenic | 35.0% | |
| TATATCACCTCCATAATCGA+TGG | - | chr8.4:4154745-4154764 | None:intergenic | 35.0% | |
| TCTGATAAGGAAGAAATGAC+CGG | - | chr8.4:4154915-4154934 | None:intergenic | 35.0% | |
| TGGGTCATCAAAAAGTTTGA+AGG | + | chr8.4:4154800-4154819 | MS.gene57879:CDS | 35.0% | |
| TGTTGCTATAGCCAAATTGA+AGG | + | chr8.4:4155322-4155341 | MS.gene57879:CDS | 35.0% | |
| TTAGTAAGAGTAGTTGTCTC+CGG | - | chr8.4:4154315-4154334 | None:intergenic | 35.0% | |
| TTCTCATCCTCTTCATCTTA+CGG | + | chr8.4:4153699-4153718 | MS.gene57879:CDS | 35.0% | |
| ! | CAAGTTAAAAAGTGCACTGT+TGG | + | chr8.4:4154672-4154691 | MS.gene57879:CDS | 35.0% |
| ! | CATTCTTGCATCTAAGATAC+CGG | + | chr8.4:4154893-4154912 | MS.gene57879:CDS | 35.0% |
| ! | GCTTTTATGCCTACATTTTG+GGG | + | chr8.4:4154195-4154214 | MS.gene57879:CDS | 35.0% |
| ! | TTGGAAGGAAAGTTTTCAGA+TGG | + | chr8.4:4153985-4154004 | MS.gene57879:CDS | 35.0% |
| ! | TTTTTCTGTACATGTTACGG+AGG | - | chr8.4:4153639-4153658 | None:intergenic | 35.0% |
| !! | AACAGTGTTGATTATTCGAC+CGG | + | chr8.4:4153856-4153875 | MS.gene57879:CDS | 35.0% |
| !! | AGATGCTTTTGATTGTGGTT+GGG | + | chr8.4:4154110-4154129 | MS.gene57879:CDS | 35.0% |
| !! | ATAGATTGTGGATTAGCTTC+AGG | + | chr8.4:4154573-4154592 | MS.gene57879:CDS | 35.0% |
| !! | TAGATGCTTTTGATTGTGGT+TGG | + | chr8.4:4154109-4154128 | MS.gene57879:CDS | 35.0% |
| !! | TAGATTGTGGATTAGCTTCA+GGG | + | chr8.4:4154574-4154593 | MS.gene57879:CDS | 35.0% |
| !!! | TCTAACTTTTTTCGGTAGTG+AGG | + | chr8.4:4154527-4154546 | MS.gene57879:CDS | 35.0% |
| ATGGGTCTCAGTAAGAGATT+TGG | + | chr8.4:4154621-4154640 | MS.gene57879:CDS | 40.0% | |
| ATTGAGAATATCCGTAGGGT+TGG | + | chr8.4:4154780-4154799 | MS.gene57879:CDS | 40.0% | |
| ATTGTTCATTGCTGCCTTAC+CGG | - | chr8.4:4155267-4155286 | None:intergenic | 40.0% | |
| CTCTCAAAACCCCAAAATGT+AGG | - | chr8.4:4154207-4154226 | None:intergenic | 40.0% | |
| GAATGGGAACATAAGACAGT+GGG | + | chr8.4:4154378-4154397 | MS.gene57879:CDS | 40.0% | |
| GAATGTGAATGGTCTGTGAA+TGG | - | chr8.4:4153803-4153822 | None:intergenic | 40.0% | |
| GCAGGCTTAAATTCAGATGA+AGG | + | chr8.4:4154414-4154433 | MS.gene57879:CDS | 40.0% | |
| GGAAATGATGAAGGCAATTG+AGG | + | chr8.4:4154440-4154459 | MS.gene57879:CDS | 40.0% | |
| GGTGCATATTTGATTGCAAC+TGG | + | chr8.4:4154948-4154967 | MS.gene57879:CDS | 40.0% | |
| GTAAGGCAGCAATGAACAAT+AGG | + | chr8.4:4155267-4155286 | MS.gene57879:CDS | 40.0% | |
| TATTTGATTGCAACTGGAGC+AGG | + | chr8.4:4154954-4154973 | MS.gene57879:CDS | 40.0% | |
| TCAACACTGTTACCTTTACC+TGG | - | chr8.4:4153847-4153866 | None:intergenic | 40.0% | |
| TGAAGGATGGGAAATGATGA+AGG | + | chr8.4:4154431-4154450 | MS.gene57879:CDS | 40.0% | |
| TGAGGGGTTTGTGAATTTGA+GGG | - | chr8.4:4153729-4153748 | None:intergenic | 40.0% | |
| TGCAATCAAATATGCACCAC+TGG | - | chr8.4:4154946-4154965 | None:intergenic | 40.0% | |
| TTAGCTTCAGGGTTAATGGA+TGG | + | chr8.4:4154585-4154604 | MS.gene57879:CDS | 40.0% | |
| TTGAGAATATCCGTAGGGTT+GGG | + | chr8.4:4154781-4154800 | MS.gene57879:CDS | 40.0% | |
| TTGAGGGGTTTGTGAATTTG+AGG | - | chr8.4:4153730-4153749 | None:intergenic | 40.0% | |
| ! | AAAGTGTGAATGGTTTGCGA+TGG | - | chr8.4:4153677-4153696 | None:intergenic | 40.0% |
| ! | AAGTTTTCAGATGGACCAGT+TGG | + | chr8.4:4153994-4154013 | MS.gene57879:CDS | 40.0% |
| ! | TTTTCATCCACTTCTACTCC+AGG | + | chr8.4:4153826-4153845 | MS.gene57879:CDS | 40.0% |
| !! | GATGCTTTTGATTGTGGTTG+GGG | + | chr8.4:4154111-4154130 | MS.gene57879:CDS | 40.0% |
| !! | TGGATTAGCTTCAGGGTTAA+TGG | + | chr8.4:4154581-4154600 | MS.gene57879:CDS | 40.0% |
| !! | TTTTTGATGACCCAACCCTA+CGG | - | chr8.4:4154794-4154813 | None:intergenic | 40.0% |
| !!! | ACATTTTGGGGTTTTGAGAG+TGG | + | chr8.4:4154207-4154226 | MS.gene57879:CDS | 40.0% |
| !!! | TATATTTTGAAGTCGAGCGG+TGG | - | chr8.4:4154648-4154667 | None:intergenic | 40.0% |
| AAACGGTCCACAATCGAAGA+TGG | - | chr8.4:4153766-4153785 | None:intergenic | 45.0% | |
| AACCTCTACGATCTCTTCTC+CGG | + | chr8.4:4154293-4154312 | MS.gene57879:CDS | 45.0% | |
| ACCTTTACCTGGAGTAGAAG+TGG | - | chr8.4:4153836-4153855 | None:intergenic | 45.0% | |
| AGGTTGAAGAGATTGCCCAA+GGG | + | chr8.4:4155231-4155250 | MS.gene57879:CDS | 45.0% | |
| ATGGTGTGCAGTGGAATTTG+AGG | - | chr8.4:4153747-4153766 | None:intergenic | 45.0% | |
| CGAATGGGAACATAAGACAG+TGG | + | chr8.4:4154377-4154396 | MS.gene57879:CDS | 45.0% | |
| CGGAACGAAATCGAAATCTC+CGG | - | chr8.4:4153878-4153897 | None:intergenic | 45.0% | |
| CTTTGTAGACAAGGTAGCGA+TGG | + | chr8.4:4155187-4155206 | MS.gene57879:CDS | 45.0% | |
| GAGGGGTTTGTGAATTTGAG+GGG | - | chr8.4:4153728-4153747 | None:intergenic | 45.0% | |
| GGCAGCAATGAACAATAGGT+TGG | + | chr8.4:4155271-4155290 | MS.gene57879:CDS | 45.0% | |
| TCCACTTCTACTCCAGGTAA+AGG | + | chr8.4:4153832-4153851 | MS.gene57879:CDS | 45.0% | |
| TCCAGGAGGGAATGTATTGT+TGG | + | chr8.4:4154845-4154864 | MS.gene57879:CDS | 45.0% | |
| TGGTGTGCAGTGGAATTTGA+GGG | - | chr8.4:4153746-4153765 | None:intergenic | 45.0% | |
| TTGATGCGCTCTTCTTCATG+TGG | - | chr8.4:4155140-4155159 | None:intergenic | 45.0% | |
| ! | GATCAAGACTCTGTTAGCCT+CGG | + | chr8.4:4153927-4153946 | MS.gene57879:CDS | 45.0% |
| ! | GTTTGTGGAGCCATCGATTA+TGG | + | chr8.4:4154732-4154751 | MS.gene57879:CDS | 45.0% |
| !! | AATAGGTTGGTTGATGCGCT+AGG | + | chr8.4:4155284-4155303 | MS.gene57879:CDS | 45.0% |
| ACAAATAGAGCAGACACGCG+AGG | - | chr8.4:4154084-4154103 | None:intergenic | 50.0% | |
| ACTGGCTGCCTCATCTGATA+AGG | - | chr8.4:4154928-4154947 | None:intergenic | 50.0% | |
| AGACACGCGAGGATCATATG+CGG | - | chr8.4:4154073-4154092 | None:intergenic | 50.0% | |
| CAATCGAAGATGGTGTGCAG+TGG | - | chr8.4:4153756-4153775 | None:intergenic | 50.0% | |
| CTGCACACCATCTTCGATTG+TGG | + | chr8.4:4153756-4153775 | MS.gene57879:CDS | 50.0% | |
| GAAGAGATCGTAGAGGTTGG+AGG | - | chr8.4:4154291-4154310 | None:intergenic | 50.0% | |
| GAGGTTGAAGAGATTGCCCA+AGG | + | chr8.4:4155230-4155249 | MS.gene57879:CDS | 50.0% | |
| GCCAACAATACATTCCCTCC+TGG | - | chr8.4:4154849-4154868 | None:intergenic | 50.0% | |
| GGAGAAGAGATCGTAGAGGT+TGG | - | chr8.4:4154294-4154313 | None:intergenic | 50.0% | |
| GGGGTTTCCGTAAGATGAAG+AGG | - | chr8.4:4153709-4153728 | None:intergenic | 50.0% | |
| GGTGTGCAGTGGAATTTGAG+GGG | - | chr8.4:4153745-4153764 | None:intergenic | 50.0% | |
| TTATCAGATGAGGCAGCCAG+TGG | + | chr8.4:4154927-4154946 | MS.gene57879:CDS | 50.0% | |
| TTCGATTTCGTTCCGCTCTC+TGG | + | chr8.4:4153883-4153902 | MS.gene57879:CDS | 50.0% | |
| ! | ATCCTACGGATTGACAGTCC+AGG | + | chr8.4:4154828-4154847 | MS.gene57879:CDS | 50.0% |
| ! | GTGTGAATGGTTTGCGATGG+AGG | - | chr8.4:4153674-4153693 | None:intergenic | 50.0% |
| ! | TACGGATTGACAGTCCAGGA+GGG | + | chr8.4:4154832-4154851 | MS.gene57879:CDS | 50.0% |
| ! | TGTGGAGCCATCGATTATGG+AGG | + | chr8.4:4154735-4154754 | MS.gene57879:CDS | 50.0% |
| !!! | GGGGTTTTGAGAGTGGAGTT+TGG | + | chr8.4:4154214-4154233 | MS.gene57879:CDS | 50.0% |
| AGATTGCCCAAGGGCGACTT+TGG | + | chr8.4:4155240-4155259 | MS.gene57879:CDS | 55.0% | |
| CTCCGGAGAAGAGATCGTAG+AGG | - | chr8.4:4154298-4154317 | None:intergenic | 55.0% | |
| CTCCTGGACTGTCAATCCGT+AGG | - | chr8.4:4154833-4154852 | None:intergenic | 55.0% | |
| ! | AGGTTGGTTGATGCGCTAGG+TGG | + | chr8.4:4155287-4155306 | MS.gene57879:CDS | 55.0% |
| ! | CTACGGATTGACAGTCCAGG+AGG | + | chr8.4:4154831-4154850 | MS.gene57879:CDS | 55.0% |
| ACCATGTTCGACACGCTCCG+AGG | - | chr8.4:4153947-4153966 | None:intergenic | 60.0% | |
| ACCGGTCCAAAGTCGCCCTT+GGG | - | chr8.4:4155249-4155268 | None:intergenic | 60.0% | |
| AGGGCGACTTTGGACCGGTA+AGG | + | chr8.4:4155250-4155269 | MS.gene57879:CDS | 60.0% | |
| TACCGGTCCAAAGTCGCCCT+TGG | - | chr8.4:4155250-4155269 | None:intergenic | 60.0% | |
| !! | ACCAGTTGGCACCGACTCTC+AGG | + | chr8.4:4154008-4154027 | MS.gene57879:CDS | 60.0% |
| !! | ACCTGAGAGTCGGTGCCAAC+TGG | - | chr8.4:4154012-4154031 | None:intergenic | 60.0% |
| GCCCAAGGGCGACTTTGGAC+CGG | + | chr8.4:4155245-4155264 | MS.gene57879:CDS | 65.0% | |
| GCCTCGGAGCGTGTCGAACA+TGG | + | chr8.4:4153943-4153962 | MS.gene57879:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 4153628 | 4155394 | 4153628 | ID=MS.gene57879 |
| chr8.4 | mRNA | 4153628 | 4155394 | 4153628 | ID=MS.gene57879.t1;Parent=MS.gene57879 |
| chr8.4 | exon | 4153628 | 4155394 | 4153628 | ID=MS.gene57879.t1.exon1;Parent=MS.gene57879.t1 |
| chr8.4 | CDS | 4153628 | 4155394 | 4153628 | ID=cds.MS.gene57879.t1;Parent=MS.gene57879.t1 |
| Gene Sequence |
| Protein sequence |
