Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58026.t1 | XP_003609428.2 | 91 | 366 | 2 | 2 | 1 | 336 | 1 | 365 | 2.10E-187 | 664.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58026.t1 | Q93ZH9 | 56.6 | 286 | 115 | 2 | 48 | 333 | 56 | 332 | 5.4e-88 | 325.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58026.t1 | G7JFE9 | 91.0 | 366 | 2 | 2 | 1 | 336 | 1 | 365 | 1.5e-187 | 664.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050762 | MS.gene58026 | 0.906601 | 1.25E-80 | -1.69E-46 |
| MS.gene050763 | MS.gene58026 | 0.905801 | 2.92E-80 | -1.69E-46 |
| MS.gene054011 | MS.gene58026 | 0.804017 | 2.64E-49 | -1.69E-46 |
| MS.gene054012 | MS.gene58026 | 0.812057 | 5.13E-51 | -1.69E-46 |
| MS.gene054013 | MS.gene58026 | 0.810179 | 1.31E-50 | -1.69E-46 |
| MS.gene054379 | MS.gene58026 | 0.875489 | 2.96E-68 | -1.69E-46 |
| MS.gene055604 | MS.gene58026 | 0.811017 | 8.64E-51 | -1.69E-46 |
| MS.gene056902 | MS.gene58026 | 0.804187 | 2.44E-49 | -1.69E-46 |
| MS.gene056931 | MS.gene58026 | 0.808385 | 3.18E-50 | -1.69E-46 |
| MS.gene056933 | MS.gene58026 | 0.806898 | 6.58E-50 | -1.69E-46 |
| MS.gene057469 | MS.gene58026 | 0.811994 | 5.30E-51 | -1.69E-46 |
| MS.gene057929 | MS.gene58026 | 0.825325 | 4.99E-54 | -1.69E-46 |
| MS.gene060559 | MS.gene58026 | 0.819088 | 1.40E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58026.t1 | MTR_4g115580 | 90.984 | 366 | 2 | 2 | 1 | 336 | 1 | 365 | 0.0 | 677 |
| MS.gene58026.t1 | MTR_5g015270 | 40.857 | 350 | 147 | 7 | 42 | 333 | 28 | 375 | 2.65e-75 | 236 |
| MS.gene58026.t1 | MTR_5g015270 | 40.395 | 354 | 147 | 8 | 42 | 333 | 28 | 379 | 1.87e-74 | 234 |
| MS.gene58026.t1 | MTR_3g103240 | 36.548 | 394 | 173 | 7 | 17 | 333 | 3 | 396 | 2.99e-74 | 234 |
| MS.gene58026.t1 | MTR_0066s0050 | 58.491 | 159 | 66 | 0 | 170 | 328 | 23 | 181 | 3.04e-62 | 197 |
| MS.gene58026.t1 | MTR_0066s0040 | 58.730 | 63 | 26 | 0 | 39 | 101 | 4 | 66 | 4.03e-21 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58026.t1 | AT5G20270 | 51.818 | 330 | 142 | 3 | 4 | 333 | 20 | 332 | 1.66e-114 | 335 |
| MS.gene58026.t1 | AT2G24150 | 38.636 | 352 | 163 | 6 | 10 | 326 | 1 | 334 | 7.68e-81 | 249 |
| MS.gene58026.t1 | AT4G30850 | 39.823 | 339 | 149 | 5 | 37 | 328 | 20 | 350 | 4.72e-78 | 243 |
| MS.gene58026.t1 | AT4G30850 | 39.823 | 339 | 149 | 5 | 37 | 328 | 20 | 350 | 4.72e-78 | 243 |
| MS.gene58026.t1 | AT4G37680 | 38.832 | 394 | 167 | 10 | 10 | 333 | 1 | 390 | 5.95e-77 | 241 |
| MS.gene58026.t1 | AT4G37680 | 38.832 | 394 | 167 | 10 | 10 | 333 | 1 | 390 | 5.95e-77 | 241 |
| MS.gene58026.t1 | AT4G37680 | 39.062 | 384 | 162 | 9 | 18 | 333 | 6 | 385 | 5.18e-76 | 239 |
| MS.gene58026.t1 | AT4G37680 | 39.062 | 384 | 162 | 9 | 18 | 333 | 6 | 385 | 5.18e-76 | 239 |
| MS.gene58026.t1 | AT4G37680 | 39.062 | 384 | 162 | 9 | 18 | 333 | 6 | 385 | 5.18e-76 | 239 |
| MS.gene58026.t1 | AT4G38320 | 38.606 | 373 | 157 | 9 | 18 | 322 | 6 | 374 | 1.43e-70 | 224 |
| MS.gene58026.t1 | AT2G24150 | 52.532 | 158 | 75 | 0 | 170 | 327 | 89 | 246 | 7.23e-55 | 180 |
| MS.gene58026.t1 | AT2G40710 | 53.763 | 93 | 43 | 0 | 241 | 333 | 1 | 93 | 1.92e-29 | 108 |
| MS.gene58026.t1 | AT4G38290 | 59.459 | 74 | 29 | 1 | 261 | 333 | 35 | 108 | 1.13e-25 | 99.4 |
Find 76 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCAAATATTTCATATTT+TGG | 0.119405 | 8.3:+11016120 | MS.gene58026:CDS |
| GTTGGATTTATTCTGTTTCT+TGG | 0.171486 | 8.3:+11014254 | MS.gene58026:CDS |
| TTCATGCTTGTGTTGCAAAT+TGG | 0.232497 | 8.3:+11015963 | MS.gene58026:CDS |
| TGGCCATTCTTTGTCTTCTT+AGG | 0.247470 | 8.3:+11015626 | MS.gene58026:CDS |
| CAACCAGGCCTCCATCTTTC+CGG | 0.258607 | 8.3:-11016076 | None:intergenic |
| GTACATAGGTCTATCTCTTC+AGG | 0.282931 | 8.3:+11015323 | MS.gene58026:intron |
| CCTTGCTATAACAAATTCTA+AGG | 0.299308 | 8.3:-11015603 | None:intergenic |
| ATGGCATTGTCTTACTTGAT+AGG | 0.313226 | 8.3:+11016028 | MS.gene58026:CDS |
| CACATGAGGCTTCATCAAAT+TGG | 0.331471 | 8.3:-11014288 | None:intergenic |
| TTGGATTTATTCTGTTTCTT+GGG | 0.332306 | 8.3:+11014255 | MS.gene58026:CDS |
| CTAGAATGGCGTGACACTTT+TGG | 0.338813 | 8.3:+11016187 | MS.gene58026:CDS |
| AGCTATGTTGTTCTGTTCAA+TGG | 0.349396 | 8.3:+11015916 | MS.gene58026:CDS |
| TTCTGATAGCATCAAAGTTC+TGG | 0.354226 | 8.3:+11015361 | MS.gene58026:CDS |
| TCGAAATGCGCGGTGTTTAC+CGG | 0.364215 | 8.3:-11015894 | None:intergenic |
| CGACATCTTTATATTATCCT+TGG | 0.366302 | 8.3:-11013926 | None:intergenic |
| TCATGCTTGTGTTGCAAATT+GGG | 0.369516 | 8.3:+11015964 | MS.gene58026:CDS |
| TCATTATCCTTCATATAATT+CGG | 0.373033 | 8.3:-11014006 | None:intergenic |
| CCATTGCCAATGGTAATTGA+TGG | 0.375582 | 8.3:-11015571 | None:intergenic |
| ATAATGAAACTTTGAATGTT+TGG | 0.388241 | 8.3:+11014097 | MS.gene58026:CDS |
| AGCTTCTTTCAAAGGCCAAT+TGG | 0.392420 | 8.3:-11014052 | None:intergenic |
| GTTCTATGTGACGCGGATAC+CGG | 0.430826 | 8.3:+11016057 | MS.gene58026:CDS |
| CTTTCTTCAGTCTCTTTCGT+TGG | 0.437703 | 8.3:+11014073 | MS.gene58026:CDS |
| CCTGGTTGGTTTGATTTAGC+AGG | 0.442111 | 8.3:+11016091 | MS.gene58026:CDS |
| TCTGTTTCTTGGGTTGACCT+TGG | 0.451875 | 8.3:+11014265 | MS.gene58026:CDS |
| TACGTTATTACAGAGCCAAT+TGG | 0.471460 | 8.3:+11014037 | MS.gene58026:CDS |
| GCTATGTTGTTCTGTTCAAT+GGG | 0.476457 | 8.3:+11015917 | MS.gene58026:CDS |
| TAGTCCCATGGCTGTAATAC+CGG | 0.489415 | 8.3:-11015834 | None:intergenic |
| CTACACTTAAAATGCTAGAA+TGG | 0.493476 | 8.3:+11016173 | MS.gene58026:CDS |
| CGGAAAGATGGAGGCCTGGT+TGG | 0.498832 | 8.3:+11016077 | MS.gene58026:CDS |
| CTGAAGAAAGCTTCTTTCAA+AGG | 0.500853 | 8.3:-11014060 | None:intergenic |
| ATCTCTTACAACAATTTACA+AGG | 0.502630 | 8.3:+11014315 | MS.gene58026:CDS |
| TGGCATTGTCTTACTTGATA+GGG | 0.509976 | 8.3:+11016029 | MS.gene58026:CDS |
| TTTAAACCATCAATTACCAT+TGG | 0.515618 | 8.3:+11015565 | MS.gene58026:CDS |
| CTTTCCCCATCACTTTCTAC+CGG | 0.516838 | 8.3:+11015875 | MS.gene58026:CDS |
| CTGTTAAGAATAGATTATGT+CGG | 0.524523 | 8.3:+11015725 | MS.gene58026:intron |
| TGGGGAAAGCAATGTTACTA+TGG | 0.530611 | 8.3:-11015861 | None:intergenic |
| TGACGCGGATACCGGAAAGA+TGG | 0.537670 | 8.3:+11016065 | MS.gene58026:CDS |
| CCTTAGAATTTGTTATAGCA+AGG | 0.538068 | 8.3:+11015603 | MS.gene58026:CDS |
| GTTTACCGGTAGAAAGTGAT+GGG | 0.539453 | 8.3:-11015880 | None:intergenic |
| CCATCAATTACCATTGGCAA+TGG | 0.541784 | 8.3:+11015571 | MS.gene58026:CDS |
| CCACCTAAGAAGACAAAGAA+TGG | 0.542364 | 8.3:-11015629 | None:intergenic |
| ATATAAAGATGTCGCATGAT+CGG | 0.549561 | 8.3:+11013935 | MS.gene58026:CDS |
| AGGAAAACATAGTAAATCTG+AGG | 0.556599 | 8.3:-11015779 | None:intergenic |
| CATGCTTGTGTTGCAAATTG+GGG | 0.564814 | 8.3:+11015965 | MS.gene58026:CDS |
| TGTTTACCGGTAGAAAGTGA+TGG | 0.568335 | 8.3:-11015881 | None:intergenic |
| ATACCGGAAAGATGGAGGCC+TGG | 0.568351 | 8.3:+11016073 | MS.gene58026:CDS |
| CCTAGCCGGTATTACAGCCA+TGG | 0.573786 | 8.3:+11015829 | MS.gene58026:CDS |
| GCAACACAAGCATGAACTGC+AGG | 0.575233 | 8.3:-11015956 | None:intergenic |
| CTTGGACTGTGTAAAAGACA+AGG | 0.577522 | 8.3:-11013908 | None:intergenic |
| GATTCAACTTCCATTGCCAA+TGG | 0.580416 | 8.3:-11015581 | None:intergenic |
| GGAGCTACCGAATTATATGA+AGG | 0.585057 | 8.3:+11013999 | MS.gene58026:CDS |
| TGGCAACTCATCTACCTAGC+CGG | 0.586984 | 8.3:+11015815 | MS.gene58026:CDS |
| TGTGTTGTCAAGAGGAACAA+AGG | 0.596024 | 8.3:+11013865 | MS.gene58026:CDS |
| GTTGCCAATGAGGTTGACAT+AGG | 0.600058 | 8.3:-11015799 | None:intergenic |
| CCATGGCTGTAATACCGGCT+AGG | 0.606682 | 8.3:-11015829 | None:intergenic |
| GGAAAACATAGTAAATCTGA+GGG | 0.611187 | 8.3:-11015778 | None:intergenic |
| TGTAAGAGATCCACCACATG+AGG | 0.615952 | 8.3:-11014302 | None:intergenic |
| TAGAATTTGTTATAGCAAGG+TGG | 0.617513 | 8.3:+11015606 | MS.gene58026:CDS |
| AGGTAGATGAGTTGCCAATG+AGG | 0.623505 | 8.3:-11015809 | None:intergenic |
| ATGTCGCATGATCGGAACAA+AGG | 0.623538 | 8.3:+11013943 | MS.gene58026:CDS |
| CGCGGATACCGGAAAGATGG+AGG | 0.624928 | 8.3:+11016068 | MS.gene58026:CDS |
| CCTGCTAAATCAAACCAACC+AGG | 0.625235 | 8.3:-11016091 | None:intergenic |
| AGACAAATTGTGTTGTCAAG+AGG | 0.634394 | 8.3:+11013857 | MS.gene58026:CDS |
| TTTGATGAAGCCTCATGTGG+TGG | 0.642283 | 8.3:+11014292 | MS.gene58026:CDS |
| ACTAGCATATGAATGTGTCA+TGG | 0.642425 | 8.3:+11016009 | MS.gene58026:CDS |
| ACAACATAGCTCGAAATGCG+CGG | 0.643746 | 8.3:-11015904 | None:intergenic |
| CTAGCCGGTATTACAGCCAT+GGG | 0.645941 | 8.3:+11015830 | MS.gene58026:CDS |
| GTAAATCTGAGGGAAGAATG+AGG | 0.646981 | 8.3:-11015768 | None:intergenic |
| AGGCTTCATCAAATTGGCCA+AGG | 0.660901 | 8.3:-11014282 | None:intergenic |
| TACTATGGTGAATAGTCCCA+TGG | 0.663061 | 8.3:-11015846 | None:intergenic |
| CATAGGTCTATCTCTTCAGG+TGG | 0.665575 | 8.3:+11015326 | MS.gene58026:intron |
| CAATTTGATGAAGCCTCATG+TGG | 0.668778 | 8.3:+11014289 | MS.gene58026:CDS |
| GGACTTTGTTCTATGTGACG+CGG | 0.692634 | 8.3:+11016050 | MS.gene58026:CDS |
| GTTGTCAAGAGGAACAAAGG+AGG | 0.716326 | 8.3:+11013868 | MS.gene58026:CDS |
| TTTACCGGTAGAAAGTGATG+GGG | 0.740060 | 8.3:-11015879 | None:intergenic |
| GCTAGTGTAACATTGCGTCG+AGG | 0.746159 | 8.3:-11015992 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTATTTAGTTTTCAAT+TGG | - | chr8.3:11014842-11014861 | None:intergenic | 10.0% |
| !!! | CTATCTATTTTTTTTTTTTT+TGG | + | chr8.3:11014149-11014168 | MS.gene58026:intron | 10.0% |
| !! | CTAAAAATTGTATGTTTATA+GGG | + | chr8.3:11014590-11014609 | MS.gene58026:intron | 15.0% |
| !!! | AAATTTTATTAGCAGAAATT+CGG | + | chr8.3:11014856-11014875 | MS.gene58026:intron | 15.0% |
| !!! | TCATCAAATATTTCATATTT+TGG | + | chr8.3:11016120-11016139 | MS.gene58026:CDS | 15.0% |
| !!! | TGTTTTTATATTAGTCAATT+TGG | + | chr8.3:11015213-11015232 | MS.gene58026:intron | 15.0% |
| !! | ATAATGAAACTTTGAATGTT+TGG | + | chr8.3:11014097-11014116 | MS.gene58026:CDS | 20.0% |
| !! | GCTAAAAATTGTATGTTTAT+AGG | + | chr8.3:11014589-11014608 | MS.gene58026:intron | 20.0% |
| !! | TCATTATCCTTCATATAATT+CGG | - | chr8.3:11014009-11014028 | None:intergenic | 20.0% |
| !! | TTCGGAAAACTAAATAAATT+TGG | + | chr8.3:11014874-11014893 | MS.gene58026:intron | 20.0% |
| !!! | AATATTTCATATTTTGGTTG+TGG | + | chr8.3:11016126-11016145 | MS.gene58026:CDS | 20.0% |
| !!! | ATTGGTTTAAATTCAAGTTT+AGG | + | chr8.3:11015044-11015063 | MS.gene58026:intron | 20.0% |
| !!! | CATATTATCTTTTTGTACAT+AGG | + | chr8.3:11015309-11015328 | MS.gene58026:intron | 20.0% |
| !!! | TATTTAGTTTTCAATTGGTA+AGG | - | chr8.3:11014837-11014856 | None:intergenic | 20.0% |
| !!! | TTGTTTACTTTTAACTTTAG+AGG | + | chr8.3:11014784-11014803 | MS.gene58026:intron | 20.0% |
| ! | AACAATAACAACTAGATCTT+GGG | + | chr8.3:11015019-11015038 | MS.gene58026:intron | 25.0% |
| ! | AATCTATTCTTAACAGAAAC+AGG | - | chr8.3:11015721-11015740 | None:intergenic | 25.0% |
| ! | ACAAAACTAGAAGCTAATAT+TGG | - | chr8.3:11015183-11015202 | None:intergenic | 25.0% |
| ! | ATCTCTTACAACAATTTACA+AGG | + | chr8.3:11014315-11014334 | MS.gene58026:CDS | 25.0% |
| ! | CATAGAAACTTTAGTACTAT+TGG | - | chr8.3:11015090-11015109 | None:intergenic | 25.0% |
| ! | CTGTTAAGAATAGATTATGT+CGG | + | chr8.3:11015725-11015744 | MS.gene58026:intron | 25.0% |
| ! | TAACAATAACAACTAGATCT+TGG | + | chr8.3:11015018-11015037 | MS.gene58026:intron | 25.0% |
| ! | TATATTAGTCAATTTGGATG+AGG | + | chr8.3:11015219-11015238 | MS.gene58026:intron | 25.0% |
| ! | TGTGAGTACAAAAATATTTC+TGG | + | chr8.3:11014628-11014647 | MS.gene58026:intron | 25.0% |
| ! | TTTAAACCATCAATTACCAT+TGG | + | chr8.3:11015565-11015584 | MS.gene58026:CDS | 25.0% |
| ! | TTTATGTGTTTATATGTGAG+AGG | + | chr8.3:11014372-11014391 | MS.gene58026:intron | 25.0% |
| !! | ACATGTAATTAACTTGAACA+AGG | + | chr8.3:11015123-11015142 | MS.gene58026:intron | 25.0% |
| !! | CATGTAATTAACTTGAACAA+GGG | + | chr8.3:11015124-11015143 | MS.gene58026:intron | 25.0% |
| !! | TTAATAATTTGAGTTACCGA+CGG | + | chr8.3:11015410-11015429 | MS.gene58026:intron | 25.0% |
| !! | TTGGATTTATTCTGTTTCTT+GGG | + | chr8.3:11014255-11014274 | MS.gene58026:CDS | 25.0% |
| !! | TTTGGATGAGGATTTTTATT+AGG | + | chr8.3:11015231-11015250 | MS.gene58026:intron | 25.0% |
| !!! | AACATACAATTTTTAGCACT+AGG | - | chr8.3:11014586-11014605 | None:intergenic | 25.0% |
| !!! | AGAAGTCGATTTCATTTTTT+CGG | - | chr8.3:11015446-11015465 | None:intergenic | 25.0% |
| AAAGAATAAGAGAACCAATC+TGG | + | chr8.3:11014421-11014440 | MS.gene58026:intron | 30.0% | |
| AAGCAAACATGACATGAAAA+TGG | + | chr8.3:11014940-11014959 | MS.gene58026:intron | 30.0% | |
| ACAATAACAACTAGATCTTG+GGG | + | chr8.3:11015020-11015039 | MS.gene58026:intron | 30.0% | |
| AGGAAAACATAGTAAATCTG+AGG | - | chr8.3:11015782-11015801 | None:intergenic | 30.0% | |
| ATATAAAGATGTCGCATGAT+CGG | + | chr8.3:11013935-11013954 | MS.gene58026:CDS | 30.0% | |
| ATCCAACTAAATGTCTGAAA+AGG | - | chr8.3:11014241-11014260 | None:intergenic | 30.0% | |
| ATGACATGAAAATGGTTTCT+TGG | + | chr8.3:11014948-11014967 | MS.gene58026:intron | 30.0% | |
| CGACATCTTTATATTATCCT+TGG | - | chr8.3:11013929-11013948 | None:intergenic | 30.0% | |
| CTACACTTAAAATGCTAGAA+TGG | + | chr8.3:11016173-11016192 | MS.gene58026:CDS | 30.0% | |
| GCAAAATTAGTTGAGAATTG+TGG | - | chr8.3:11015290-11015309 | None:intergenic | 30.0% | |
| GGAAAACATAGTAAATCTGA+GGG | - | chr8.3:11015781-11015800 | None:intergenic | 30.0% | |
| TGACAATGTAAGAATTTGCA+GGG | + | chr8.3:11015524-11015543 | MS.gene58026:intron | 30.0% | |
| ! | CCTTGCTATAACAAATTCTA+AGG | - | chr8.3:11015606-11015625 | None:intergenic | 30.0% |
| ! | GTTGGATTTATTCTGTTTCT+TGG | + | chr8.3:11014254-11014273 | MS.gene58026:CDS | 30.0% |
| !! | CCTTAGAATTTGTTATAGCA+AGG | + | chr8.3:11015603-11015622 | MS.gene58026:CDS | 30.0% |
| !! | TAGAATTTGTTATAGCAAGG+TGG | + | chr8.3:11015606-11015625 | MS.gene58026:CDS | 30.0% |
| !!! | TTTCATATTTTGGTTGTGGT+TGG | + | chr8.3:11016130-11016149 | MS.gene58026:CDS | 30.0% |
| !!! | TTTTTGGTTTTCATTCTGTC+TGG | + | chr8.3:11014165-11014184 | MS.gene58026:intron | 30.0% |
| AACGCTTAGCAACGAAATTA+TGG | + | chr8.3:11015481-11015500 | MS.gene58026:intron | 35.0% | |
| AACTGTCTAGCTAATAGCAT+AGG | + | chr8.3:11015256-11015275 | MS.gene58026:intron | 35.0% | |
| ACACCTTATACAATACACTC+TGG | + | chr8.3:11014560-11014579 | MS.gene58026:intron | 35.0% | |
| ACAGAAACAGGTTTAAGTCA+TGG | - | chr8.3:11015709-11015728 | None:intergenic | 35.0% | |
| ACTAGCATATGAATGTGTCA+TGG | + | chr8.3:11016009-11016028 | MS.gene58026:CDS | 35.0% | |
| ACTGTCTAGCTAATAGCATA+GGG | + | chr8.3:11015257-11015276 | MS.gene58026:intron | 35.0% | |
| AGACAAATTGTGTTGTCAAG+AGG | + | chr8.3:11013857-11013876 | MS.gene58026:CDS | 35.0% | |
| AGCTATGTTGTTCTGTTCAA+TGG | + | chr8.3:11015916-11015935 | MS.gene58026:CDS | 35.0% | |
| ATGGCATTGTCTTACTTGAT+AGG | + | chr8.3:11016028-11016047 | MS.gene58026:CDS | 35.0% | |
| ATGTAAGAATTTGCAGGGAA+CGG | + | chr8.3:11015529-11015548 | MS.gene58026:intron | 35.0% | |
| CAGAAACAGGTTTAAGTCAT+GGG | - | chr8.3:11015708-11015727 | None:intergenic | 35.0% | |
| CTGAAGAAAGCTTCTTTCAA+AGG | - | chr8.3:11014063-11014082 | None:intergenic | 35.0% | |
| CTGACAATGTAAGAATTTGC+AGG | + | chr8.3:11015523-11015542 | MS.gene58026:intron | 35.0% | |
| CTTAGCAACGAAATTATGGA+CGG | + | chr8.3:11015485-11015504 | MS.gene58026:intron | 35.0% | |
| GCTATGTTGTTCTGTTCAAT+GGG | + | chr8.3:11015917-11015936 | MS.gene58026:CDS | 35.0% | |
| TACGTTATTACAGAGCCAAT+TGG | + | chr8.3:11014037-11014056 | MS.gene58026:CDS | 35.0% | |
| TCATGCTTGTGTTGCAAATT+GGG | + | chr8.3:11015964-11015983 | MS.gene58026:CDS | 35.0% | |
| TGGCATTGTCTTACTTGATA+GGG | + | chr8.3:11016029-11016048 | MS.gene58026:CDS | 35.0% | |
| TTCAATTGGTAAGGTTACCA+AGG | - | chr8.3:11014828-11014847 | None:intergenic | 35.0% | |
| TTCATGCTTGTGTTGCAAAT+TGG | + | chr8.3:11015963-11015982 | MS.gene58026:CDS | 35.0% | |
| TTCTGATAGCATCAAAGTTC+TGG | + | chr8.3:11015361-11015380 | MS.gene58026:CDS | 35.0% | |
| ! | ATGCTTTCTGAGAAATGTTG+AGG | - | chr8.3:11014449-11014468 | None:intergenic | 35.0% |
| ! | TGCCTTTTCAGACATTTAGT+TGG | + | chr8.3:11014236-11014255 | MS.gene58026:intron | 35.0% |
| ! | TTACGCTCTTGTGTCTTTTA+TGG | + | chr8.3:11013978-11013997 | MS.gene58026:CDS | 35.0% |
| ! | TTCTGTTCAATGGGACTTTT+CGG | + | chr8.3:11015926-11015945 | MS.gene58026:CDS | 35.0% |
| ! | TTTTCCTATGTCAACCTCAT+TGG | + | chr8.3:11015795-11015814 | MS.gene58026:CDS | 35.0% |
| !! | AGTTTCTATGCAGTTTGTTG+TGG | + | chr8.3:11015100-11015119 | MS.gene58026:intron | 35.0% |
| !! | TCTGTCTGGTGTTTTTGATT+AGG | + | chr8.3:11014179-11014198 | MS.gene58026:intron | 35.0% |
| !!! | ACTTTTAACTTTAGAGGAGC+TGG | + | chr8.3:11014790-11014809 | MS.gene58026:intron | 35.0% |
| !!! | GTACTATTGGTTTTGTCAAC+AGG | - | chr8.3:11015077-11015096 | None:intergenic | 35.0% |
| !!! | TATTGGTTTTGTCAACAGGA+CGG | - | chr8.3:11015073-11015092 | None:intergenic | 35.0% |
| ACAACTAGATCTTGGGGAAT+TGG | + | chr8.3:11015026-11015045 | MS.gene58026:intron | 40.0% | |
| AGCTTCTTTCAAAGGCCAAT+TGG | - | chr8.3:11014055-11014074 | None:intergenic | 40.0% | |
| AGGCCAGAGTGTATTGTATA+AGG | - | chr8.3:11014566-11014585 | None:intergenic | 40.0% | |
| CAATTTGATGAAGCCTCATG+TGG | + | chr8.3:11014289-11014308 | MS.gene58026:CDS | 40.0% | |
| CACATGAGGCTTCATCAAAT+TGG | - | chr8.3:11014291-11014310 | None:intergenic | 40.0% | |
| CATGCTTGTGTTGCAAATTG+GGG | + | chr8.3:11015965-11015984 | MS.gene58026:CDS | 40.0% | |
| CCACCTAAGAAGACAAAGAA+TGG | - | chr8.3:11015632-11015651 | None:intergenic | 40.0% | |
| CCATCAATTACCATTGGCAA+TGG | + | chr8.3:11015571-11015590 | MS.gene58026:CDS | 40.0% | |
| CCATTCTTTGTCTTCTTAGG+TGG | + | chr8.3:11015629-11015648 | MS.gene58026:intron | 40.0% | |
| CCATTGCCAATGGTAATTGA+TGG | - | chr8.3:11015574-11015593 | None:intergenic | 40.0% | |
| CTTGGACTGTGTAAAAGACA+AGG | - | chr8.3:11013911-11013930 | None:intergenic | 40.0% | |
| CTTTCTTCAGTCTCTTTCGT+TGG | + | chr8.3:11014073-11014092 | MS.gene58026:CDS | 40.0% | |
| GAAATGTTGAGGAACCAGAT+TGG | - | chr8.3:11014438-11014457 | None:intergenic | 40.0% | |
| GATTCAACTTCCATTGCCAA+TGG | - | chr8.3:11015584-11015603 | None:intergenic | 40.0% | |
| GGAGCTACCGAATTATATGA+AGG | + | chr8.3:11013999-11014018 | MS.gene58026:CDS | 40.0% | |
| GTAAATCTGAGGGAAGAATG+AGG | - | chr8.3:11015771-11015790 | None:intergenic | 40.0% | |
| GTACATAGGTCTATCTCTTC+AGG | + | chr8.3:11015323-11015342 | MS.gene58026:intron | 40.0% | |
| GTTTACCGGTAGAAAGTGAT+GGG | - | chr8.3:11015883-11015902 | None:intergenic | 40.0% | |
| TACTATGGTGAATAGTCCCA+TGG | - | chr8.3:11015849-11015868 | None:intergenic | 40.0% | |
| TGGCCATTCTTTGTCTTCTT+AGG | + | chr8.3:11015626-11015645 | MS.gene58026:CDS | 40.0% | |
| TGGGGAAAGCAATGTTACTA+TGG | - | chr8.3:11015864-11015883 | None:intergenic | 40.0% | |
| TGTGTTGTCAAGAGGAACAA+AGG | + | chr8.3:11013865-11013884 | MS.gene58026:CDS | 40.0% | |
| TGTTTACCGGTAGAAAGTGA+TGG | - | chr8.3:11015884-11015903 | None:intergenic | 40.0% | |
| TTTACCGGTAGAAAGTGATG+GGG | - | chr8.3:11015882-11015901 | None:intergenic | 40.0% | |
| TTTCGGTCTCTAATTTCCGT+CGG | - | chr8.3:11015429-11015448 | None:intergenic | 40.0% | |
| ! | CTTGTCTTTTACACAGTCCA+AGG | + | chr8.3:11013909-11013928 | MS.gene58026:CDS | 40.0% |
| ! | TAGAATGGCGTGACACTTTT+GGG | + | chr8.3:11016188-11016207 | MS.gene58026:CDS | 40.0% |
| !! | GCTGGATCTCTAAAATACCT+TGG | + | chr8.3:11014808-11014827 | MS.gene58026:intron | 40.0% |
| ACAACATAGCTCGAAATGCG+CGG | - | chr8.3:11015907-11015926 | None:intergenic | 45.0% | |
| AGGCTTCATCAAATTGGCCA+AGG | - | chr8.3:11014285-11014304 | None:intergenic | 45.0% | |
| AGGTAGATGAGTTGCCAATG+AGG | - | chr8.3:11015812-11015831 | None:intergenic | 45.0% | |
| ATGTCGCATGATCGGAACAA+AGG | + | chr8.3:11013943-11013962 | MS.gene58026:CDS | 45.0% | |
| CATAGGTCTATCTCTTCAGG+TGG | + | chr8.3:11015326-11015345 | MS.gene58026:intron | 45.0% | |
| CATGGGAGTGACATGAAAAG+AGG | - | chr8.3:11015691-11015710 | None:intergenic | 45.0% | |
| CCTGCTAAATCAAACCAACC+AGG | - | chr8.3:11016094-11016113 | None:intergenic | 45.0% | |
| CTTTCCCCATCACTTTCTAC+CGG | + | chr8.3:11015875-11015894 | MS.gene58026:CDS | 45.0% | |
| GGACTTTGTTCTATGTGACG+CGG | + | chr8.3:11016050-11016069 | MS.gene58026:CDS | 45.0% | |
| GTTGCCAATGAGGTTGACAT+AGG | - | chr8.3:11015802-11015821 | None:intergenic | 45.0% | |
| GTTGTCAAGAGGAACAAAGG+AGG | + | chr8.3:11013868-11013887 | MS.gene58026:CDS | 45.0% | |
| TAGTCCCATGGCTGTAATAC+CGG | - | chr8.3:11015837-11015856 | None:intergenic | 45.0% | |
| TGTAAGAGATCCACCACATG+AGG | - | chr8.3:11014305-11014324 | None:intergenic | 45.0% | |
| TTTGATGAAGCCTCATGTGG+TGG | + | chr8.3:11014292-11014311 | MS.gene58026:CDS | 45.0% | |
| ! | CTAGAATGGCGTGACACTTT+TGG | + | chr8.3:11016187-11016206 | MS.gene58026:CDS | 45.0% |
| !! | CCTGGTTGGTTTGATTTAGC+AGG | + | chr8.3:11016091-11016110 | MS.gene58026:CDS | 45.0% |
| !! | TCTGTTTCTTGGGTTGACCT+TGG | + | chr8.3:11014265-11014284 | MS.gene58026:CDS | 45.0% |
| !! | TGACACTTTTGGGTGTGACA+AGG | + | chr8.3:11016198-11016217 | MS.gene58026:CDS | 45.0% |
| AATGACCTGCAGGTAACAGC+TGG | - | chr8.3:11014475-11014494 | None:intergenic | 50.0% | |
| ACACAACACCAATGACCTGC+AGG | - | chr8.3:11014485-11014504 | None:intergenic | 50.0% | |
| AGCTGTTACCTGCAGGTCAT+TGG | + | chr8.3:11014474-11014493 | MS.gene58026:intron | 50.0% | |
| ATATGCCAGCTGTTACCTGC+AGG | + | chr8.3:11014467-11014486 | MS.gene58026:intron | 50.0% | |
| CTAGCCGGTATTACAGCCAT+GGG | + | chr8.3:11015830-11015849 | MS.gene58026:CDS | 50.0% | |
| GCAACACAAGCATGAACTGC+AGG | - | chr8.3:11015959-11015978 | None:intergenic | 50.0% | |
| GCTAGTGTAACATTGCGTCG+AGG | - | chr8.3:11015995-11016014 | None:intergenic | 50.0% | |
| GGGAGTGACATGAAAAGAGG+TGG | - | chr8.3:11015688-11015707 | None:intergenic | 50.0% | |
| GTTCTATGTGACGCGGATAC+CGG | + | chr8.3:11016057-11016076 | MS.gene58026:CDS | 50.0% | |
| TCGAAATGCGCGGTGTTTAC+CGG | - | chr8.3:11015897-11015916 | None:intergenic | 50.0% | |
| TGGCAACTCATCTACCTAGC+CGG | + | chr8.3:11015815-11015834 | MS.gene58026:CDS | 50.0% | |
| ATACCGGAAAGATGGAGGCC+TGG | + | chr8.3:11016073-11016092 | MS.gene58026:CDS | 55.0% | |
| CAACCAGGCCTCCATCTTTC+CGG | - | chr8.3:11016079-11016098 | None:intergenic | 55.0% | |
| CCTAGCCGGTATTACAGCCA+TGG | + | chr8.3:11015829-11015848 | MS.gene58026:CDS | 55.0% | |
| GGTGGCAAATGCTGCTAGAG+AGG | - | chr8.3:11015670-11015689 | None:intergenic | 55.0% | |
| TGACGCGGATACCGGAAAGA+TGG | + | chr8.3:11016065-11016084 | MS.gene58026:CDS | 55.0% | |
| ! | CCATGGCTGTAATACCGGCT+AGG | - | chr8.3:11015832-11015851 | None:intergenic | 55.0% |
| CGCGGATACCGGAAAGATGG+AGG | + | chr8.3:11016068-11016087 | MS.gene58026:CDS | 60.0% | |
| CGGAAAGATGGAGGCCTGGT+TGG | + | chr8.3:11016077-11016096 | MS.gene58026:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 11013844 | 11016225 | 11013844 | ID=MS.gene58026 |
| chr8.3 | mRNA | 11013844 | 11016225 | 11013844 | ID=MS.gene58026.t1;Parent=MS.gene58026 |
| chr8.3 | exon | 11013844 | 11014121 | 11013844 | ID=MS.gene58026.t1.exon1;Parent=MS.gene58026.t1 |
| chr8.3 | CDS | 11013844 | 11014121 | 11013844 | ID=cds.MS.gene58026.t1;Parent=MS.gene58026.t1 |
| chr8.3 | exon | 11014247 | 11014336 | 11014247 | ID=MS.gene58026.t1.exon2;Parent=MS.gene58026.t1 |
| chr8.3 | CDS | 11014247 | 11014336 | 11014247 | ID=cds.MS.gene58026.t1;Parent=MS.gene58026.t1 |
| chr8.3 | exon | 11015331 | 11015382 | 11015331 | ID=MS.gene58026.t1.exon3;Parent=MS.gene58026.t1 |
| chr8.3 | CDS | 11015331 | 11015382 | 11015331 | ID=cds.MS.gene58026.t1;Parent=MS.gene58026.t1 |
| chr8.3 | exon | 11015545 | 11015647 | 11015545 | ID=MS.gene58026.t1.exon4;Parent=MS.gene58026.t1 |
| chr8.3 | CDS | 11015545 | 11015647 | 11015545 | ID=cds.MS.gene58026.t1;Parent=MS.gene58026.t1 |
| chr8.3 | exon | 11015738 | 11016225 | 11015738 | ID=MS.gene58026.t1.exon5;Parent=MS.gene58026.t1 |
| chr8.3 | CDS | 11015738 | 11016225 | 11015738 | ID=cds.MS.gene58026.t1;Parent=MS.gene58026.t1 |
| Gene Sequence |
| Protein sequence |
