AlfalfaGEDB | MS.gene58154

M. sativa cultivar XinJiangDaYe / MS.gene58154

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58154.t1	XP_003630131.2	96.2	235	8	1	1	235	1	234	2.50E-123	451.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58154.t1	Q9SVB7	72.0	125	23	3	122	235	181	304	1.8e-45	184.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58154.t1	G7LBC7	96.2	235	8	1	1	235	1	234	1.8e-123	451.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene58154.t1	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049350	MS.gene58154	0.81753	3.14E-52	-1.69E-46
MS.gene051720	MS.gene58154	0.801277	9.72E-49	-1.69E-46
MS.gene053122	MS.gene58154	0.809543	1.80E-50	-1.69E-46
MS.gene053536	MS.gene58154	0.80026	1.57E-48	-1.69E-46
MS.gene053538	MS.gene58154	0.804829	1.79E-49	-1.69E-46
MS.gene055465	MS.gene58154	0.823842	1.11E-53	-1.69E-46
MS.gene055468	MS.gene58154	0.813098	3.04E-51	-1.69E-46
MS.gene055537	MS.gene58154	0.81306	3.10E-51	-1.69E-46
MS.gene055580	MS.gene58154	-0.806118	9.61E-50	-1.69E-46
MS.gene055764	MS.gene58154	0.807337	5.31E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58154.t1	MTR_8g092140	96.170	235	8	1	1	235	1	234	7.54e-160	442
MS.gene58154.t1	MTR_3g095080	63.710	248	69	12	2	235	4	244	2.35e-86	256
MS.gene58154.t1	MTR_3g095080	59.919	247	56	11	2	235	4	220	3.46e-77	232
MS.gene58154.t1	MTR_3g095080	56.701	194	65	11	2	183	4	190	2.59e-47	155
MS.gene58154.t1	MTR_8g007270	57.343	143	50	3	85	227	89	220	2.32e-46	154
MS.gene58154.t1	MTR_5g043880	67.073	82	26	1	136	217	100	180	1.78e-32	119
MS.gene58154.t1	MTR_7g079010	57.303	89	34	2	132	217	110	197	8.35e-31	113
MS.gene58154.t1	MTR_1g086790	66.234	77	25	1	141	217	139	214	5.89e-30	114
MS.gene58154.t1	MTR_4g094588	69.444	72	21	1	146	217	164	234	7.57e-29	111
MS.gene58154.t1	MTR_2g033820	67.568	74	23	1	144	217	187	259	8.95e-29	112

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58154.t1	AT4G39410	72.000	125	23	3	122	235	181	304	5.49e-59	189
MS.gene58154.t1	AT2G44745	65.600	125	39	3	101	222	83	206	8.44e-48	157
MS.gene58154.t1	AT1G69310	65.060	83	28	1	135	217	122	203	2.23e-33	122
MS.gene58154.t1	AT1G69310	65.060	83	28	1	135	217	122	203	2.23e-33	122
MS.gene58154.t1	AT1G69310	65.060	83	28	1	135	217	122	203	2.23e-33	122
MS.gene58154.t1	AT1G64000	63.415	82	29	1	136	217	90	170	2.14e-30	112
MS.gene58154.t1	AT5G41570	61.176	85	32	1	133	217	71	154	2.16e-30	111
MS.gene58154.t1	AT2G46130	59.091	88	34	2	141	228	11	96	1.24e-29	107
MS.gene58154.t1	AT4G18170	65.854	82	26	2	141	221	153	233	1.86e-29	112
MS.gene58154.t1	AT5G49520	67.568	74	23	1	144	217	205	277	2.44e-29	113

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Find 58 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTAACTTTCCCTTCTT+TGG	0.155148	4.2:+9991921	MS.gene58154:CDS
AAAGTTAGGTTTGTTGGGAA+AGG	0.496923	4.2:-9991910	None:intergenic
AACCCAAAGAAGGGAAAGTT+AGG	0.429367	4.2:-9991924	None:intergenic
AACCTAACTTTCCCTTCTTT+GGG	0.323054	4.2:+9991922	MS.gene58154:CDS
AAGGGAAAGTTAGGTTTGTT+GGG	0.400880	4.2:-9991915	None:intergenic
AATAATAGTGGTAAAAGAAA+TGG	0.401015	4.2:+9992489	MS.gene58154:CDS
AATGTCTTGAAGCAAAACCT+AGG	0.659684	4.2:-9992594	None:intergenic
AGATCATCATGATAATCATT+TGG	0.374995	4.2:+9992515	MS.gene58154:CDS
AGATGTAAGTGAAGAAGCTA+TGG	0.510048	4.2:-9991974	None:intergenic
AGCGCTTAGCTGAAGATCCA+AGG	0.615258	4.2:+9993681	MS.gene58154:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAGCCATACATCACATAA+AGG	-	chr4.2:9993503-9993522	None:intergenic	30.0%
ATAGATCCATTGTAAATCCA+TGG	+	chr4.2:9992109-9992128	MS.gene58154:CDS	30.0%
ATGGTAATAACCACATATGA+AGG	+	chr4.2:9993704-9993723	MS.gene58154:CDS	30.0%
ATTTACAATGGATCTATGCA+AGG	-	chr4.2:9992106-9992125	None:intergenic	30.0%
CTAATGTAATCTCTAAGTGT+TGG	-	chr4.2:9992261-9992280	None:intergenic	30.0%
CTCAATCTGACAATTTCTTA+TGG	+	chr4.2:9993771-9993790	MS.gene58154:CDS	30.0%
GGTCAAATGTAGTTATTATG+GGG	+	chr4.2:9992896-9992915	MS.gene58154:intron	30.0%
TCATCATGATAATCATTTGG+GGG	+	chr4.2:9992518-9992537	MS.gene58154:CDS	30.0%
TGTTGACAACAACTTATTTG+AGG	+	chr4.2:9991852-9991871	MS.gene58154:CDS	30.0%
AAACCTAACTTTCCCTTCTT+TGG	+	chr4.2:9991921-9991940	MS.gene58154:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	9991838	9993796	9991838	ID=MS.gene58154
chr4.2	mRNA	9991838	9993796	9991838	ID=MS.gene58154.t1;Parent=MS.gene58154
chr4.2	exon	9991838	9992130	9991838	ID=MS.gene58154.t1.exon1;Parent=MS.gene58154.t1
chr4.2	CDS	9991838	9992130	9991838	ID=cds.MS.gene58154.t1;Parent=MS.gene58154.t1
chr4.2	exon	9992452	9992700	9992452	ID=MS.gene58154.t1.exon2;Parent=MS.gene58154.t1
chr4.2	CDS	9992452	9992700	9992452	ID=cds.MS.gene58154.t1;Parent=MS.gene58154.t1
chr4.2	exon	9993631	9993796	9993631	ID=MS.gene58154.t1.exon3;Parent=MS.gene58154.t1
chr4.2	CDS	9993631	9993796	9993631	ID=cds.MS.gene58154.t1;Parent=MS.gene58154.t1

Gene Sequence

>MS.gene58154

ATGTCTCAAATTATTGTTGACAACAACTTATTTGAGGAGGAGGATCAGATTCCCACACAAATGGGGTTCATTCCTTTCCCAACAAACCTAACTTTCCCTTCTTTGGGTTGCAATCAATCTTTGAAAGCCTTCAGTTCCATAGCTTCTTCACTTACATCTGAATCAGATTCTACATCAAATCTAACACAAACCCTACTCACAACCAATCCTCAAAAATCAAAAGAATACCTCACTTCTAGCTTTGGAGGAAGTACTCCATTCCTATCCTTGCATAGATCCATTGTAAATCCATGGTGAGACAAAAACAATTCAATTCTCATATTTGTTTTATCATGTACCAAAAAAAGTTAAAAATTAAAATTAAAATTAGAGACGGAAAAATTAATATTTGGTTACCATATTTTACCAAATTTGATGTCTCCAACACTTAGAGATTACATTAGAGACATATTTCGTATTTTTTTCGTTTTTAAATTTCCGTTGCTACTTCAATTTATTTTAGCTAATTAGTTAATTAACTGTTTTTTCTTAATCTTGCTAAAGAGATGCTATTGCTATATATATATAGATTGTCTGACGGGTGTTGTAAATTTGTTTCATATATATATATATAGGGCAATATTGGGAGGAGAAGTAATAAGTAATTGCATGAATAATAGTGGTAAAAGAAATGGAGTAGATCATCATGATAATCATTTGGGGGTTTCTGCTACCATGAAAATGAAGAAAATGAAGGGAAGAAAGAAAGTGAGAGAGCCTAGGTTTTGCTTCAAGACATTGAGTACTGATGTGGATGTGTTGGATGATGGTTACAAGTGGAGGAAGTATGGACAAAAAGTTGTAAAGAACACACAACATCCCAGGTATATCAACTAAAAATTCAAGGGTTCTCTTTTTTTGTCTTACTTTGATAATTACTCAATTAATGTTGTAATAATTGTCACATTTCATTTGAAAAAAAAAAATCAAAAAGTTTGTTGCTTTTAATTTTAATATAGTTTTAATTGATTTTTTTTCTTCTAACCGTAACTCTAAATATTACAGTATCCATGAAAAATGGTCAAATGTAGTTATTATGGGGTGGAGGAAGTGATAATTTGAAAGAATTAATATATTTGATTTGATACTATATATTGAAACCTTGATTCATTGTGTCCCAAACTTACATGAGCTATGCTATATCTCTAGAAAAAAAACATTAAGAATTCTTCAAGAATAAAAAGCAACCAATCACAATGCACTATTTGTCACAATTCAAGGAGGTGTGGCTGAAAAATAGTAAGTGGACAAATAAATCATGCAATTAAAACTTGCCACATGTGTCTTGAAAAATTCTTGATGCTATTTTTCTAGATAAATAGCATTTTCCAACTTACATATGTTCTCTCTCCAATCTCCACACCCTTCTTTCCTTCATTATTATTTTTTTCATCACAACTGATTAGCTTTAATTTACTGGCTTCGGGAAGGTTTTAATATTTCTCTGAGTAATAACGTAAAGATAATTAAAGATTCCTTTCACTACATGCATATGCAAAAGAAACTTGTTCGGAATGATACTAATTTGTCAATGTTATGAGTTATGACTAATAATTATGACCCTCAAATGTTAAGTATAGAGTATATATATATCCTCACATGTGATCACTTTTCCTAGGTGGACCTTTATGTGATGTATGGCTATTGATTAATTCTTTGTGTTTTGAAGGTTTTGTTTTTAACGTACTTTATTTTGGACTGCTGATTAATTACCAAGTTAATTGTCTCATATAATGAATATTAAAAATGTGTAGAAGCTATTACCGTTGCACACAAGAGAATTGTCGTGTAAAGAAACGTGTGGAGCGCTTAGCTGAAGATCCAAGGATGGTAATAACCACATATGAAGGAAGACATGTACATTCTCCATCCAATGATCTTGAAGACTCTCAAACTCAATCTGACAATTTCTTATGGTAG

Protein sequence

>MS.gene58154.t1

MSQIIVDNNLFEEEDQIPTQMGFIPFPTNLTFPSLGCNQSLKAFSSIASSLTSESDSTSNLTQTLLTTNPQKSKEYLTSSFGGSTPFLSLHRSIVNPWAILGGEVISNCMNNSGKRNGVDHHDNHLGVSATMKMKKMKGRKKVREPRFCFKTLSTDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQENCRVKKRVERLAEDPRMVITTYEGRHVHSPSNDLEDSQTQSDNFLW