Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59135.t1 | AES59867.2 | 94.9 | 914 | 25 | 1 | 6 | 919 | 93 | 984 | 0.00E+00 | 1723.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59135.t1 | F4INA9 | 59.7 | 924 | 331 | 8 | 6 | 919 | 81 | 973 | 1.8e-312 | 1073.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59135.t1 | G7I947 | 94.9 | 914 | 25 | 1 | 6 | 919 | 93 | 984 | 0.0e+00 | 1723.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050560 | MS.gene59135 | 0.806845 | 6.75E-50 | -1.69E-46 |
| MS.gene050787 | MS.gene59135 | 0.810537 | 1.10E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene59135 | 0.832156 | 1.11E-55 | -1.69E-46 |
| MS.gene052011 | MS.gene59135 | -0.811052 | 8.49E-51 | -1.69E-46 |
| MS.gene054183 | MS.gene59135 | 0.805755 | 1.15E-49 | -1.69E-46 |
| MS.gene056723 | MS.gene59135 | 0.810588 | 1.07E-50 | -1.69E-46 |
| MS.gene056846 | MS.gene59135 | 0.806448 | 8.19E-50 | -1.69E-46 |
| MS.gene057469 | MS.gene59135 | 0.808634 | 2.81E-50 | -1.69E-46 |
| MS.gene05811 | MS.gene59135 | 0.806813 | 6.86E-50 | -1.69E-46 |
| MS.gene05842 | MS.gene59135 | 0.811052 | 8.49E-51 | -1.69E-46 |
| MS.gene059420 | MS.gene59135 | 0.8072 | 5.68E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59135.t1 | MTR_1g031140 | 94.858 | 914 | 25 | 1 | 6 | 919 | 93 | 984 | 0.0 | 1781 |
| MS.gene59135.t1 | MTR_3g079900 | 94.588 | 388 | 21 | 0 | 522 | 909 | 1 | 388 | 0.0 | 753 |
| MS.gene59135.t1 | MTR_3g079915 | 97.872 | 141 | 3 | 0 | 308 | 448 | 1 | 141 | 1.42e-91 | 287 |
| MS.gene59135.t1 | MTR_3g079925 | 67.066 | 167 | 33 | 1 | 6 | 172 | 32 | 176 | 4.81e-62 | 208 |
| MS.gene59135.t1 | MTR_3g079925 | 67.683 | 164 | 31 | 1 | 6 | 169 | 45 | 186 | 9.94e-62 | 207 |
| MS.gene59135.t1 | MTR_7g084560 | 34.146 | 410 | 222 | 8 | 464 | 864 | 267 | 637 | 5.51e-59 | 217 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59135.t1 | AT2G01440 | 60.087 | 922 | 331 | 9 | 6 | 919 | 81 | 973 | 0.0 | 1096 |
| MS.gene59135.t1 | AT3G02060 | 34.009 | 444 | 244 | 9 | 464 | 898 | 266 | 669 | 5.73e-62 | 226 |
| MS.gene59135.t1 | AT3G02060 | 34.009 | 444 | 244 | 9 | 464 | 898 | 266 | 669 | 5.73e-62 | 226 |
| MS.gene59135.t1 | AT3G02060 | 34.009 | 444 | 244 | 9 | 464 | 898 | 265 | 668 | 5.93e-62 | 226 |
Find 225 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCTGTTTCAGAAATTATT+TGG | 0.134771 | 1.4:-15728152 | MS.gene59135:CDS |
| GGCCCCTGAGTTGGTGTAAT+TGG | 0.159367 | 1.4:+15717806 | None:intergenic |
| ACTTGTTCGCAATACTATTT+AGG | 0.171715 | 1.4:+15733230 | None:intergenic |
| CTTGCATGCATTGAAGTTAT+TGG | 0.181327 | 1.4:-15727566 | MS.gene59135:CDS |
| GTGATGTATGGAGGAATTTA+TGG | 0.188932 | 1.4:-15735296 | None:intergenic |
| CTTGCAGGTATTTGCTCTTA+TGG | 0.204641 | 1.4:-15735002 | MS.gene59135:intron |
| TGCTCTGAAAGTTCGATAAT+TGG | 0.224352 | 1.4:+15718066 | None:intergenic |
| ACCCTTGCGCTTGCTTTATA+TGG | 0.228107 | 1.4:-15720595 | MS.gene59135:CDS |
| GCCACTCAAGTAATTGAAAT+TGG | 0.233843 | 1.4:-15717889 | MS.gene59135:CDS |
| GACATTGATTGAGGTGTTAA+AGG | 0.244357 | 1.4:+15734641 | None:intergenic |
| AATTCCTCTCTAATGTCTTT+AGG | 0.250188 | 1.4:+15729987 | None:intergenic |
| CATAACATCCCTGATCTAAT+TGG | 0.250534 | 1.4:-15734977 | MS.gene59135:CDS |
| AAATTATTTGGGATTTAAAA+AGG | 0.251974 | 1.4:-15728140 | MS.gene59135:CDS |
| AAAGACATTAGAGAGGAATT+TGG | 0.258509 | 1.4:-15729984 | MS.gene59135:CDS |
| TAAATGTTGTTCAAAATCTT+TGG | 0.281915 | 1.4:+15734784 | None:intergenic |
| TCTCTAATGTCTTTAGGAAT+TGG | 0.285234 | 1.4:+15729993 | None:intergenic |
| TGGGTTTCATCTTGCTAATA+TGG | 0.287027 | 1.4:-15717689 | MS.gene59135:CDS |
| GCAATTTCCTGCACTTAAAC+TGG | 0.298836 | 1.4:-15716826 | MS.gene59135:CDS |
| CTCAAAGACTGATGATTATA+TGG | 0.304409 | 1.4:-15720659 | MS.gene59135:CDS |
| TGCAGACAGCGTTGAATTCT+CGG | 0.309005 | 1.4:-15722067 | MS.gene59135:CDS |
| TCGACTTCCAATCTGGTAAT+AGG | 0.310055 | 1.4:+15717601 | None:intergenic |
| AAGAAACGTTAGGGAAGTTT+AGG | 0.311725 | 1.4:-15717936 | MS.gene59135:CDS |
| GTTATCTCAGACCGGTTTCC+AGG | 0.312908 | 1.4:-15718006 | MS.gene59135:CDS |
| TACCAAGACCTTCGAGCATT+TGG | 0.317152 | 1.4:+15728310 | None:intergenic |
| TAAATCTTCAATTTCGAGTC+TGG | 0.326921 | 1.4:-15720704 | MS.gene59135:CDS |
| TCCAATGAATCGGCTACTTC+AGG | 0.327507 | 1.4:-15728112 | MS.gene59135:intron |
| CTGTCTCACCAAGAAGGTTT+TGG | 0.334829 | 1.4:-15728211 | MS.gene59135:CDS |
| TTCTGAAACAAATATCATTT+CGG | 0.340676 | 1.4:-15734810 | MS.gene59135:CDS |
| GATATTTCCATCAATTACTT+TGG | 0.341300 | 1.4:-15734876 | MS.gene59135:CDS |
| AGTTATTGGCTCTGGCTATC+AGG | 0.341562 | 1.4:-15727552 | MS.gene59135:intron |
| TTTGAAGGGTAGATACAATA+TGG | 0.347129 | 1.4:+15731150 | None:intergenic |
| AAGGAGCTCCAAAACCTTCT+TGG | 0.359567 | 1.4:+15728203 | None:intergenic |
| GCTTGCGTTGCTTGAAAACT+TGG | 0.369982 | 1.4:-15722315 | MS.gene59135:CDS |
| ATCAAATATAAGTCTCTTGC+GGG | 0.371310 | 1.4:+15729042 | None:intergenic |
| CTTCCATTTCCAATTAGATC+AGG | 0.373423 | 1.4:+15734968 | None:intergenic |
| TTGGAGAAGTCTTATCTTCA+AGG | 0.382863 | 1.4:-15734242 | MS.gene59135:intron |
| TAGCATATGATCGTGGAAAA+TGG | 0.383067 | 1.4:+15734316 | None:intergenic |
| GGTGAAGATGTTAAACTAGA+AGG | 0.386289 | 1.4:+15734692 | None:intergenic |
| AATATTGACGTTCTTGAAGA+TGG | 0.388935 | 1.4:-15731204 | MS.gene59135:CDS |
| TGACCGGAAGTAAGAGTATA+GGG | 0.389140 | 1.4:+15728180 | None:intergenic |
| GGATATTAGTGAAGCTGATC+TGG | 0.391300 | 1.4:-15729065 | MS.gene59135:CDS |
| CGATTGAAATTTCTCCGGTC+TGG | 0.391448 | 1.4:+15722112 | None:intergenic |
| ATCCCTGATCTAATTGGAAA+TGG | 0.392081 | 1.4:-15734971 | MS.gene59135:CDS |
| TAACTATTAGGCGGCTTTCA+TGG | 0.392532 | 1.4:-15722378 | MS.gene59135:intron |
| GTTTGAACCCAACATTCCTT+CGG | 0.393103 | 1.4:-15731122 | MS.gene59135:CDS |
| AAAGCAAGCGCAAGGGTCCT+TGG | 0.393595 | 1.4:+15720601 | None:intergenic |
| CGAGTTTCCTATTACCAGAT+TGG | 0.393606 | 1.4:-15717608 | MS.gene59135:CDS |
| AGCTGTTTCAGAAATTATTT+GGG | 0.398821 | 1.4:-15728151 | MS.gene59135:CDS |
| GCCCCTGAGTTGGTGTAATT+GGG | 0.399144 | 1.4:+15717807 | None:intergenic |
| TCAGCTTCACTAATATCCTT+TGG | 0.401300 | 1.4:+15729070 | None:intergenic |
| CAAGCAAGTGTTTATAATGC+TGG | 0.403142 | 1.4:+15722333 | None:intergenic |
| GAGATAACTCATTAAGTGTA+AGG | 0.403540 | 1.4:+15734540 | None:intergenic |
| GGAGAAATTTCAATCGTCAT+TGG | 0.404798 | 1.4:-15722105 | MS.gene59135:CDS |
| CATATAATCATCAGTCTTTG+AGG | 0.409324 | 1.4:+15720660 | None:intergenic |
| GTTTGAACAGGAATCCTTCC+TGG | 0.409760 | 1.4:+15718918 | None:intergenic |
| ACCTGAAGTAGCCGATTCAT+TGG | 0.412932 | 1.4:+15728111 | None:intergenic |
| TTTGAACCCAACATTCCTTC+GGG | 0.416108 | 1.4:-15731121 | MS.gene59135:CDS |
| ATATAAAATTGTCACCTTGT+AGG | 0.418463 | 1.4:+15718857 | None:intergenic |
| CCTTCATCGTTTGAAAGTAC+TGG | 0.419728 | 1.4:-15717725 | MS.gene59135:CDS |
| TGCATTGAAGTTATTGGCTC+TGG | 0.419747 | 1.4:-15727560 | MS.gene59135:CDS |
| ATCAATGTCTTCAATATATG+AGG | 0.420240 | 1.4:-15734627 | MS.gene59135:CDS |
| CAGGAAATTGCTCCAGATCA+TGG | 0.427300 | 1.4:+15716838 | None:intergenic |
| CACCAGGTCCACGTAATAAT+AGG | 0.429367 | 1.4:+15717665 | None:intergenic |
| CTTAAGTGCTTCCCATGATC+TGG | 0.430962 | 1.4:-15716850 | MS.gene59135:CDS |
| CGTTGCTTCTTAGTTAATCC+AGG | 0.431264 | 1.4:+15734494 | None:intergenic |
| ATATTTCCATCAATTACTTT+GGG | 0.431693 | 1.4:-15734875 | MS.gene59135:CDS |
| TTCCAAATGCTCGAAGGTCT+TGG | 0.432542 | 1.4:-15728312 | MS.gene59135:CDS |
| CATGCTCAATATCCGATTCC+CGG | 0.435529 | 1.4:+15733338 | None:intergenic |
| ACATCTGTCAATTGCTTACC+TGG | 0.436492 | 1.4:-15734512 | MS.gene59135:CDS |
| CTCAAGTGGGTTTGTATGAT+GGG | 0.437453 | 1.4:-15734844 | MS.gene59135:CDS |
| GGGCAGTATTTGATGTTTGT+TGG | 0.441166 | 1.4:-15734261 | MS.gene59135:CDS |
| TATTGTATCTACCCTTCAAA+AGG | 0.443035 | 1.4:-15731147 | MS.gene59135:CDS |
| TGATGGATGAGTTGGAAGAT+GGG | 0.443050 | 1.4:-15718110 | MS.gene59135:CDS |
| CCTCAAGTGGGTTTGTATGA+TGG | 0.443194 | 1.4:-15734845 | MS.gene59135:CDS |
| AGCATGTAACCGACAAAGTT+GGG | 0.443905 | 1.4:-15733321 | MS.gene59135:CDS |
| ACAACCATCATCGATGCATC+TGG | 0.444936 | 1.4:+15717856 | None:intergenic |
| ATCTCGTAGTGATCTTTAGT+AGG | 0.446993 | 1.4:+15731237 | None:intergenic |
| AGACAGCCGCTTTGCCTGCT+AGG | 0.450136 | 1.4:-15716792 | MS.gene59135:CDS |
| CTTCCCTATACTCTTACTTC+CGG | 0.450519 | 1.4:-15728183 | MS.gene59135:CDS |
| TACAATTGTGGTTTATTACA+TGG | 0.458064 | 1.4:-15717982 | MS.gene59135:CDS |
| CACAATTGTATCCTGGAAAC+CGG | 0.460527 | 1.4:+15717995 | None:intergenic |
| TTGCTTGGCAAGAAACAATC+TGG | 0.461165 | 1.4:-15717640 | MS.gene59135:CDS |
| ATGATGGATGAGTTGGAAGA+TGG | 0.462197 | 1.4:-15718111 | MS.gene59135:CDS |
| GCACTACCCAAAGTAATTGA+TGG | 0.462197 | 1.4:+15734869 | None:intergenic |
| GTCCAACTCGGCCCCTGAGT+TGG | 0.463318 | 1.4:+15717797 | None:intergenic |
| CAAAACCTTCTTGGTGAGAC+AGG | 0.464022 | 1.4:+15728212 | None:intergenic |
| AAGAGGAAGATTTAACAGTA+AGG | 0.469294 | 1.4:-15721995 | MS.gene59135:intron |
| TTGACCGGAAGTAAGAGTAT+AGG | 0.470071 | 1.4:+15728179 | None:intergenic |
| TCGATGGTATATGTTTGAAC+AGG | 0.470456 | 1.4:+15718906 | None:intergenic |
| TGATGTCCCGAAGGAATGTT+GGG | 0.475017 | 1.4:+15731115 | None:intergenic |
| TCAGATTGCAGACCGGGAAT+CGG | 0.476393 | 1.4:-15733350 | MS.gene59135:CDS |
| ATTGCCGTCGACTTCCAATC+TGG | 0.478317 | 1.4:+15717594 | None:intergenic |
| AAATGAAATCTAAAATGAAT+CGG | 0.481089 | 1.4:-15734940 | MS.gene59135:CDS |
| ATTGTATCTACCCTTCAAAA+GGG | 0.481958 | 1.4:-15731146 | MS.gene59135:CDS |
| CCAACTGTTGCTTTACTCAC+TGG | 0.482345 | 1.4:-15722275 | MS.gene59135:CDS |
| AAGCAAGCGCAAGGGTCCTT+GGG | 0.483118 | 1.4:+15720602 | None:intergenic |
| CGTGGACCTGGTGACTTGCT+TGG | 0.483435 | 1.4:-15717655 | MS.gene59135:CDS |
| TGGCCTCTCTTTAGCGCAAA+GGG | 0.484083 | 1.4:+15731170 | None:intergenic |
| TCTTGGTACACAAGTAGAAA+AGG | 0.485150 | 1.4:-15728295 | MS.gene59135:CDS |
| AGCGCAAGGGTCCTTGGGAT+GGG | 0.485659 | 1.4:+15720607 | None:intergenic |
| CAATCTGGTAATAGGAAACT+CGG | 0.485660 | 1.4:+15717609 | None:intergenic |
| AAGCGCAAGGGTCCTTGGGA+TGG | 0.488030 | 1.4:+15720606 | None:intergenic |
| ACCAATTTCAATTACTTGAG+TGG | 0.489380 | 1.4:+15717888 | None:intergenic |
| TCCTTTGTCACTTCCCTCGA+TGG | 0.489814 | 1.4:+15718890 | None:intergenic |
| GGAATTGGATCAACAATGAC+TGG | 0.492228 | 1.4:+15730008 | None:intergenic |
| TGGTTGTCAGATTGCAGACC+GGG | 0.492299 | 1.4:-15733356 | MS.gene59135:CDS |
| CGCTGTCTGCAAACAAACTG+TGG | 0.492730 | 1.4:+15722079 | None:intergenic |
| AAAGGCCGGTTCCAATGAAT+CGG | 0.493622 | 1.4:-15728122 | MS.gene59135:CDS |
| TGAAACAGCTTGCAGTTGAC+CGG | 0.494944 | 1.4:+15728164 | None:intergenic |
| GGGAAGTGACAAAGGATTTG+AGG | 0.495742 | 1.4:-15718883 | MS.gene59135:CDS |
| AGTAGCCGATTCATTGGAAC+CGG | 0.496130 | 1.4:+15728117 | None:intergenic |
| TCATTACTTGAGGTGATTGT+TGG | 0.496922 | 1.4:-15733376 | MS.gene59135:CDS |
| TTTCATGGTTCCAACTGAGT+TGG | 0.497308 | 1.4:-15722363 | MS.gene59135:CDS |
| GTGATGAATTCTGAGAGGTT+TGG | 0.497651 | 1.4:-15717835 | MS.gene59135:CDS |
| GAGCATGTAACCGACAAAGT+TGG | 0.500156 | 1.4:-15733322 | MS.gene59135:CDS |
| TATATTGAAGACATTGATTG+AGG | 0.503798 | 1.4:+15734632 | None:intergenic |
| GCACACGGGGACATTTATGA+TGG | 0.504771 | 1.4:-15734282 | MS.gene59135:CDS |
| TTGTTCAATTTCATTACTTG+AGG | 0.510057 | 1.4:-15733386 | MS.gene59135:CDS |
| AGACGCACATGTTGCTGCAC+TGG | 0.511644 | 1.4:-15717563 | MS.gene59135:intron |
| AATGACGATTGAAATTTCTC+CGG | 0.513924 | 1.4:+15722107 | None:intergenic |
| TTTGGGTAGTGCTCCTCAAG+TGG | 0.515223 | 1.4:-15734858 | MS.gene59135:CDS |
| CCAGATGATGATGGATGAGT+TGG | 0.516635 | 1.4:-15718118 | MS.gene59135:intron |
| CACCAACTCAGGGGCCGAGT+TGG | 0.517789 | 1.4:-15717799 | MS.gene59135:CDS |
| CCTGCACTTAAACTGGAGCT+TGG | 0.519333 | 1.4:-15716819 | MS.gene59135:CDS |
| AATAAACCACAATTGTATCC+TGG | 0.525067 | 1.4:+15717988 | None:intergenic |
| GCCTTGTTCCGCGTCCAACT+CGG | 0.525727 | 1.4:+15717785 | None:intergenic |
| GGAAGATTCTCAAAAGAAAG+TGG | 0.525817 | 1.4:-15734582 | MS.gene59135:CDS |
| TTTCAGGGTGATGTTGGATG+TGG | 0.527128 | 1.4:-15727608 | MS.gene59135:intron |
| TGGCCCAATTACACCAACTC+AGG | 0.527566 | 1.4:-15717810 | MS.gene59135:CDS |
| CGCTTTGGTGTGATTCAAAG+AGG | 0.530319 | 1.4:-15722012 | MS.gene59135:CDS |
| TTGGGTAGTGCTCCTCAAGT+GGG | 0.534669 | 1.4:-15734857 | MS.gene59135:CDS |
| TTCTTGCCAAGCAAGTCACC+AGG | 0.535464 | 1.4:+15717649 | None:intergenic |
| TTCCATTTCCAATTAGATCA+GGG | 0.538775 | 1.4:+15734969 | None:intergenic |
| AAAATTGGATCAAGTTACTA+GGG | 0.539797 | 1.4:-15734603 | MS.gene59135:CDS |
| ACAATTGTGGTTTATTACAT+GGG | 0.540012 | 1.4:-15717981 | MS.gene59135:CDS |
| TGGAAATATCCTACACATCA+AGG | 0.540440 | 1.4:+15734889 | None:intergenic |
| CAGATAACCGACTTACCACC+AGG | 0.541332 | 1.4:-15718936 | MS.gene59135:CDS |
| AGGAAATTGCTCCAGATCAT+GGG | 0.542959 | 1.4:+15716839 | None:intergenic |
| AGGATTTGAGGATGCCTACA+AGG | 0.545223 | 1.4:-15718871 | MS.gene59135:intron |
| CTCGGCCTTACGTATTGCTG+TGG | 0.546224 | 1.4:-15722049 | MS.gene59135:CDS |
| GACTTGATCAATCACCTAGC+AGG | 0.546791 | 1.4:+15716778 | None:intergenic |
| GTGGATGAGCAGCATCGCTT+TGG | 0.547311 | 1.4:-15722027 | MS.gene59135:CDS |
| ATCTCAAAGTTATCTCAGAC+CGG | 0.549467 | 1.4:-15718014 | MS.gene59135:CDS |
| CGGTTTCCAGGATACAATTG+TGG | 0.550814 | 1.4:-15717994 | MS.gene59135:CDS |
| GAAGATTCTCAAAAGAAAGT+GGG | 0.551057 | 1.4:-15734581 | MS.gene59135:CDS |
| CACCATATAAAGCAAGCGCA+AGG | 0.551892 | 1.4:+15720593 | None:intergenic |
| CTCAGGGGCCGAGTTGGACG+CGG | 0.553537 | 1.4:-15717793 | MS.gene59135:CDS |
| ATGATGTCCCGAAGGAATGT+TGG | 0.554639 | 1.4:+15731114 | None:intergenic |
| CCAAGCTCCAGTTTAAGTGC+AGG | 0.555098 | 1.4:+15716819 | None:intergenic |
| ATGTTGCAGGGTATCCAGAC+CGG | 0.555872 | 1.4:-15722126 | MS.gene59135:intron |
| TGTTCCAGATGCATCGATGA+TGG | 0.557877 | 1.4:-15717860 | MS.gene59135:CDS |
| CATCAAATATAAGTCTCTTG+CGG | 0.558668 | 1.4:+15729041 | None:intergenic |
| GGCCTTACGTATTGCTGTGG+TGG | 0.559193 | 1.4:-15722046 | MS.gene59135:CDS |
| ACGTTAGGGAAGTTTAGGAC+TGG | 0.563325 | 1.4:-15717931 | MS.gene59135:CDS |
| CCAGTACTTTCAAACGATGA+AGG | 0.564004 | 1.4:+15717725 | None:intergenic |
| GCCGAGTTGGACGCGGAACA+AGG | 0.565761 | 1.4:-15717786 | MS.gene59135:CDS |
| TTGGTTGTCAGATTGCAGAC+CGG | 0.566943 | 1.4:-15733357 | MS.gene59135:CDS |
| GATGGATGAGTTGGAAGATG+GGG | 0.572787 | 1.4:-15718109 | MS.gene59135:CDS |
| TGTATCTACCCTTCAAAAGG+GGG | 0.574846 | 1.4:-15731144 | MS.gene59135:CDS |
| TATCCCTTTGCGCTAAAGAG+AGG | 0.577247 | 1.4:-15731173 | MS.gene59135:CDS |
| ATGGCCTCTCTTTAGCGCAA+AGG | 0.577278 | 1.4:+15731169 | None:intergenic |
| ACGACATCTCCTTGATGTGT+AGG | 0.579277 | 1.4:-15734898 | MS.gene59135:CDS |
| TACTGGAGCAATCATCAGAT+GGG | 0.589389 | 1.4:-15717708 | MS.gene59135:CDS |
| TGGATCAACAATGACTGGCA+AGG | 0.594831 | 1.4:+15730013 | None:intergenic |
| ATCTTCAATTTCGAGTCTGG+AGG | 0.595795 | 1.4:-15720701 | MS.gene59135:CDS |
| TTCAGGGTGATGTTGGATGT+GGG | 0.597686 | 1.4:-15727607 | MS.gene59135:intron |
| GCAGACATGGCAAGAACATG+TGG | 0.598690 | 1.4:+15720634 | None:intergenic |
| ATGGTCCTGTCTCACCAAGA+AGG | 0.599941 | 1.4:-15728217 | MS.gene59135:CDS |
| TCCTTCGGGACATCATTGCA+AGG | 0.600821 | 1.4:-15731107 | MS.gene59135:intron |
| GATTGAGGTGTTAAAGGACA+AGG | 0.601011 | 1.4:+15734647 | None:intergenic |
| GAAGGATTGACATACAAAGA+AGG | 0.601579 | 1.4:+15734710 | None:intergenic |
| TTGTATCTACCCTTCAAAAG+GGG | 0.603929 | 1.4:-15731145 | MS.gene59135:CDS |
| GGCCCAATTACACCAACTCA+GGG | 0.604595 | 1.4:-15717809 | MS.gene59135:CDS |
| ACACTGTGTGTACAAAGGAA+TGG | 0.606966 | 1.4:-15728236 | MS.gene59135:CDS |
| GTACTGGAGCAATCATCAGA+TGG | 0.606977 | 1.4:-15717709 | MS.gene59135:CDS |
| TAAAAGTAAAACGTGTGCCA+CGG | 0.607986 | 1.4:+15733260 | None:intergenic |
| ACCATATAAAGCAAGCGCAA+GGG | 0.608898 | 1.4:+15720594 | None:intergenic |
| ACAAGCGCGGATTATTCGCA+AGG | 0.610496 | 1.4:-15722237 | MS.gene59135:intron |
| CGGAAGTAAGAGTATAGGGA+AGG | 0.611652 | 1.4:+15728184 | None:intergenic |
| GTTCAAACATATACCATCGA+GGG | 0.613078 | 1.4:-15718903 | MS.gene59135:CDS |
| ATCCACCACAGCAATACGTA+AGG | 0.613184 | 1.4:+15722044 | None:intergenic |
| ACCATCGAGGGAAGTGACAA+AGG | 0.613822 | 1.4:-15718891 | MS.gene59135:CDS |
| CCAGTGAGTAAAGCAACAGT+TGG | 0.614716 | 1.4:+15722275 | None:intergenic |
| TGGATTGCAACCAACTCAGT+TGG | 0.614757 | 1.4:+15722353 | None:intergenic |
| AATCTGGTAATAGGAAACTC+GGG | 0.616903 | 1.4:+15717610 | None:intergenic |
| AATCCTTCCTGGTGGTAAGT+CGG | 0.617389 | 1.4:+15718929 | None:intergenic |
| ATGGATGAGTTGGAAGATGG+GGG | 0.618804 | 1.4:-15718108 | MS.gene59135:CDS |
| GCTGTCTGCAAACAAACTGT+GGG | 0.622441 | 1.4:+15722080 | None:intergenic |
| CGATTCTTCAGAGGTAAGAG+AGG | 0.624675 | 1.4:-15734759 | MS.gene59135:CDS |
| TGGGATGGGAGTAGCAGACA+TGG | 0.625483 | 1.4:+15720621 | None:intergenic |
| CCATCATACAAACCCACTTG+AGG | 0.625602 | 1.4:+15734845 | None:intergenic |
| GGTACACAAGTAGAAAAGGA+TGG | 0.625886 | 1.4:-15728291 | MS.gene59135:CDS |
| ACCTTGCAATGATGTCCCGA+AGG | 0.628557 | 1.4:+15731106 | None:intergenic |
| TGGTGATATGTCACTGACAC+AGG | 0.629735 | 1.4:-15720575 | MS.gene59135:intron |
| GACCTATTATTACGTGGACC+TGG | 0.631359 | 1.4:-15717667 | MS.gene59135:CDS |
| GAATTCTGAGAGGTTTGGAA+TGG | 0.632033 | 1.4:-15717830 | MS.gene59135:CDS |
| TTTCAAACGATGAAGGCCAC+TGG | 0.635677 | 1.4:+15717732 | None:intergenic |
| ACATTTATACGATTCTTCAG+AGG | 0.636619 | 1.4:-15734768 | MS.gene59135:CDS |
| CTAATCTACAGAATGCACAC+GGG | 0.637931 | 1.4:-15734296 | MS.gene59135:CDS |
| GCAGAAGCAGCACGAAGCTG+AGG | 0.639554 | 1.4:+15718039 | None:intergenic |
| AAATAACACTGTGTGTACAA+AGG | 0.641684 | 1.4:-15728241 | MS.gene59135:CDS |
| ATTACCAGATTGGAAGTCGA+CGG | 0.641804 | 1.4:-15717598 | MS.gene59135:CDS |
| CACACGGGGACATTTATGAT+GGG | 0.644132 | 1.4:-15734281 | MS.gene59135:CDS |
| ATTTGTTTCAGAATATGTTG+TGG | 0.648943 | 1.4:+15734820 | None:intergenic |
| CAATTATTCCAAATGCTCGA+AGG | 0.649656 | 1.4:-15728318 | MS.gene59135:CDS |
| AGATAACTGTGGGTTTCACA+CGG | 0.649674 | 1.4:-15734462 | MS.gene59135:intron |
| TTAATATCATCAACTGCCAG+TGG | 0.651291 | 1.4:-15717748 | MS.gene59135:CDS |
| GTGAGCAACTAGATAACTGT+GGG | 0.657830 | 1.4:-15734472 | MS.gene59135:CDS |
| TGTCTGCTACTCCCATCCCA+AGG | 0.667833 | 1.4:-15720618 | MS.gene59135:CDS |
| GCTAATCTACAGAATGCACA+CGG | 0.668201 | 1.4:-15734297 | MS.gene59135:CDS |
| CATAGCATGTGTGAGTGGCA+AGG | 0.670366 | 1.4:-15733194 | MS.gene59135:intron |
| CGTGAGCAACTAGATAACTG+TGG | 0.671660 | 1.4:-15734473 | MS.gene59135:CDS |
| AAGATTCTCAAAAGAAAGTG+GGG | 0.672414 | 1.4:-15734580 | MS.gene59135:CDS |
| TAACCGACTTACCACCAGGA+AGG | 0.674759 | 1.4:-15718932 | MS.gene59135:CDS |
| AATATGGACCTATTATTACG+TGG | 0.675630 | 1.4:-15717673 | MS.gene59135:CDS |
| TGTAGATTAGCATATGATCG+TGG | 0.678884 | 1.4:+15734309 | None:intergenic |
| AATTCCTAAAGACATTAGAG+AGG | 0.682353 | 1.4:-15729991 | MS.gene59135:CDS |
| AGAGACATAGCATGTGTGAG+TGG | 0.682414 | 1.4:-15733199 | MS.gene59135:CDS |
| CAATCACCTAGCAGGCAAAG+CGG | 0.695432 | 1.4:+15716786 | None:intergenic |
| TGAACAGGAATCCTTCCTGG+TGG | 0.697461 | 1.4:+15718921 | None:intergenic |
| CAACCCCACTAAAACAAGCG+CGG | 0.702736 | 1.4:-15722250 | MS.gene59135:CDS |
| TGTTCAAACATATACCATCG+AGG | 0.717968 | 1.4:-15718904 | MS.gene59135:CDS |
| TAATCTACAGAATGCACACG+GGG | 0.721253 | 1.4:-15734295 | MS.gene59135:CDS |
| TGGTTGTGATGAATTCTGAG+AGG | 0.736566 | 1.4:-15717840 | MS.gene59135:CDS |
| GCCCAATTACACCAACTCAG+GGG | 0.737840 | 1.4:-15717808 | MS.gene59135:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 15716785 | 15735311 | 15716785 | ID=MS.gene59135 |
| chr1.4 | mRNA | 15716785 | 15735311 | 15716785 | ID=MS.gene59135.t1;Parent=MS.gene59135 |
| chr1.4 | exon | 15735297 | 15735311 | 15735297 | ID=MS.gene59135.t1.exon1;Parent=MS.gene59135.t1 |
| chr1.4 | CDS | 15735297 | 15735311 | 15735297 | ID=cds.MS.gene59135.t1;Parent=MS.gene59135.t1 |
| chr1.4 | exon | 15734463 | 15735017 | 15734463 | ID=MS.gene59135.t1.exon2;Parent=MS.gene59135.t1 |
| chr1.4 | CDS | 15734463 | 15735017 | 15734463 | ID=cds.MS.gene59135.t1;Parent=MS.gene59135.t1 |
| chr1.4 | exon | 15734243 | 15734355 | 15734243 | ID=MS.gene59135.t1.exon3;Parent=MS.gene59135.t1 |
| chr1.4 | CDS | 15734243 | 15734355 | 15734243 | ID=cds.MS.gene59135.t1;Parent=MS.gene59135.t1 |
| chr1.4 | exon | 15733195 | 15733423 | 15733195 | ID=MS.gene59135.t1.exon4;Parent=MS.gene59135.t1 |
| chr1.4 | CDS | 15733195 | 15733423 | 15733195 | ID=cds.MS.gene59135.t1;Parent=MS.gene59135.t1 |
| chr1.4 | exon | 15731108 | 15731271 | 15731108 | ID=MS.gene59135.t1.exon5;Parent=MS.gene59135.t1 |
| chr1.4 | CDS | 15731108 | 15731271 | 15731108 | ID=cds.MS.gene59135.t1;Parent=MS.gene59135.t1 |
| chr1.4 | exon | 15729965 | 15730046 | 15729965 | ID=MS.gene59135.t1.exon6;Parent=MS.gene59135.t1 |
| chr1.4 | CDS | 15729965 | 15730046 | 15729965 | ID=cds.MS.gene59135.t1;Parent=MS.gene59135.t1 |
| chr1.4 | exon | 15729024 | 15729113 | 15729024 | ID=MS.gene59135.t1.exon7;Parent=MS.gene59135.t1 |
| chr1.4 | CDS | 15729024 | 15729113 | 15729024 | ID=cds.MS.gene59135.t1;Parent=MS.gene59135.t1 |
| chr1.4 | exon | 15728113 | 15728346 | 15728113 | ID=MS.gene59135.t1.exon8;Parent=MS.gene59135.t1 |
| chr1.4 | CDS | 15728113 | 15728346 | 15728113 | ID=cds.MS.gene59135.t1;Parent=MS.gene59135.t1 |
| chr1.4 | exon | 15727553 | 15727624 | 15727553 | ID=MS.gene59135.t1.exon9;Parent=MS.gene59135.t1 |
| chr1.4 | CDS | 15727553 | 15727624 | 15727553 | ID=cds.MS.gene59135.t1;Parent=MS.gene59135.t1 |
| chr1.4 | exon | 15722238 | 15722390 | 15722238 | ID=MS.gene59135.t1.exon10;Parent=MS.gene59135.t1 |
| chr1.4 | CDS | 15722238 | 15722390 | 15722238 | ID=cds.MS.gene59135.t1;Parent=MS.gene59135.t1 |
| chr1.4 | exon | 15721996 | 15722139 | 15721996 | ID=MS.gene59135.t1.exon11;Parent=MS.gene59135.t1 |
| chr1.4 | CDS | 15721996 | 15722139 | 15721996 | ID=cds.MS.gene59135.t1;Parent=MS.gene59135.t1 |
| chr1.4 | exon | 15720576 | 15720734 | 15720576 | ID=MS.gene59135.t1.exon12;Parent=MS.gene59135.t1 |
| chr1.4 | CDS | 15720576 | 15720734 | 15720576 | ID=cds.MS.gene59135.t1;Parent=MS.gene59135.t1 |
| chr1.4 | exon | 15718872 | 15718955 | 15718872 | ID=MS.gene59135.t1.exon13;Parent=MS.gene59135.t1 |
| chr1.4 | CDS | 15718872 | 15718955 | 15718872 | ID=cds.MS.gene59135.t1;Parent=MS.gene59135.t1 |
| chr1.4 | exon | 15717564 | 15718136 | 15717564 | ID=MS.gene59135.t1.exon14;Parent=MS.gene59135.t1 |
| chr1.4 | CDS | 15717564 | 15718136 | 15717564 | ID=cds.MS.gene59135.t1;Parent=MS.gene59135.t1 |
| chr1.4 | exon | 15716785 | 15716877 | 15716785 | ID=MS.gene59135.t1.exon15;Parent=MS.gene59135.t1 |
| chr1.4 | CDS | 15716785 | 15716877 | 15716785 | ID=cds.MS.gene59135.t1;Parent=MS.gene59135.t1 |
| Gene Sequence |
| Protein sequence |
