Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056846.t1 | XP_013468035.1 | 91.2 | 227 | 11 | 4 | 1 | 221 | 1 | 224 | 8.40E-105 | 389.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056846.t1 | O34614 | 41.8 | 141 | 73 | 3 | 83 | 221 | 15 | 148 | 7.1e-20 | 99.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056846.t1 | A0A072VJS6 | 91.2 | 227 | 11 | 4 | 1 | 221 | 1 | 224 | 6.0e-105 | 389.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene056846 | 0.806853 | 6.72E-50 | -1.69E-46 |
| MS.gene050301 | MS.gene056846 | 0.805789 | 1.13E-49 | -1.69E-46 |
| MS.gene051582 | MS.gene056846 | 0.807817 | 4.20E-50 | -1.69E-46 |
| MS.gene052011 | MS.gene056846 | -0.80296 | 4.38E-49 | -1.69E-46 |
| MS.gene052253 | MS.gene056846 | 0.816267 | 6.04E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene056846 | 0.804674 | 1.93E-49 | -1.69E-46 |
| MS.gene055564 | MS.gene056846 | 0.813052 | 3.11E-51 | -1.69E-46 |
| MS.gene056846 | MS.gene057121 | 0.816981 | 4.18E-52 | -1.69E-46 |
| MS.gene056846 | MS.gene05811 | 0.801416 | 9.10E-49 | -1.69E-46 |
| MS.gene056846 | MS.gene05842 | 0.800477 | 1.42E-48 | -1.69E-46 |
| MS.gene056846 | MS.gene05907 | 0.824227 | 9.05E-54 | -1.69E-46 |
| MS.gene056846 | MS.gene062853 | 0.800507 | 1.40E-48 | -1.69E-46 |
| MS.gene056846 | MS.gene063114 | 0.801991 | 6.93E-49 | -1.69E-46 |
| MS.gene056846 | MS.gene06470 | 0.845266 | 4.52E-59 | -1.69E-46 |
| MS.gene056846 | MS.gene06691 | 0.814086 | 1.84E-51 | -1.69E-46 |
| MS.gene056846 | MS.gene068905 | 0.829648 | 4.58E-55 | -1.69E-46 |
| MS.gene056846 | MS.gene06900 | 0.807417 | 5.11E-50 | -1.69E-46 |
| MS.gene056846 | MS.gene073438 | 0.839692 | 1.36E-57 | -1.69E-46 |
| MS.gene056846 | MS.gene07366 | 0.816856 | 4.46E-52 | -1.69E-46 |
| MS.gene056846 | MS.gene07596 | 0.810091 | 1.37E-50 | -1.69E-46 |
| MS.gene056846 | MS.gene20612 | 0.800554 | 1.36E-48 | -1.69E-46 |
| MS.gene056846 | MS.gene20910 | 0.802215 | 6.24E-49 | -1.69E-46 |
| MS.gene056846 | MS.gene22295 | 0.809795 | 1.59E-50 | -1.69E-46 |
| MS.gene056846 | MS.gene22296 | 0.821206 | 4.57E-53 | -1.69E-46 |
| MS.gene056846 | MS.gene22764 | 0.811757 | 5.97E-51 | -1.69E-46 |
| MS.gene056846 | MS.gene24730 | 0.805639 | 1.21E-49 | -1.69E-46 |
| MS.gene056846 | MS.gene28311 | 0.832992 | 6.89E-56 | -1.69E-46 |
| MS.gene056846 | MS.gene29105 | 0.800668 | 1.29E-48 | -1.69E-46 |
| MS.gene056846 | MS.gene31030 | 0.807489 | 4.93E-50 | -1.69E-46 |
| MS.gene056846 | MS.gene34272 | 0.807997 | 3.85E-50 | -1.69E-46 |
| MS.gene056846 | MS.gene38339 | 0.804189 | 2.43E-49 | -1.69E-46 |
| MS.gene056846 | MS.gene39051 | 0.806234 | 9.08E-50 | -1.69E-46 |
| MS.gene056846 | MS.gene39299 | 0.803427 | 3.51E-49 | -1.69E-46 |
| MS.gene056846 | MS.gene39334 | 0.848137 | 7.42E-60 | -1.69E-46 |
| MS.gene056846 | MS.gene43917 | 0.823423 | 1.40E-53 | -1.69E-46 |
| MS.gene056846 | MS.gene44087 | 0.803933 | 2.75E-49 | -1.69E-46 |
| MS.gene056846 | MS.gene45108 | 0.815495 | 8.98E-52 | -1.69E-46 |
| MS.gene056846 | MS.gene45431 | 0.819176 | 1.33E-52 | -1.69E-46 |
| MS.gene056846 | MS.gene47869 | 0.806774 | 6.99E-50 | -1.69E-46 |
| MS.gene056846 | MS.gene51070 | 0.806132 | 9.54E-50 | -1.69E-46 |
| MS.gene056846 | MS.gene57566 | 0.805821 | 1.11E-49 | -1.69E-46 |
| MS.gene056846 | MS.gene58480 | 0.811328 | 7.40E-51 | -1.69E-46 |
| MS.gene056846 | MS.gene59135 | 0.806448 | 8.19E-50 | -1.69E-46 |
| MS.gene056846 | MS.gene61507 | 0.802456 | 5.56E-49 | -1.69E-46 |
| MS.gene056846 | MS.gene64621 | 0.801632 | 8.22E-49 | -1.69E-46 |
| MS.gene056846 | MS.gene65665 | 0.816185 | 6.30E-52 | -1.69E-46 |
| MS.gene056846 | MS.gene66847 | 0.807016 | 6.21E-50 | -1.69E-46 |
| MS.gene056846 | MS.gene77660 | 0.819808 | 9.56E-53 | -1.69E-46 |
| MS.gene056846 | MS.gene79179 | 0.821374 | 4.18E-53 | -1.69E-46 |
| MS.gene056846 | MS.gene80140 | 0.825731 | 4.00E-54 | -1.69E-46 |
| MS.gene056846 | MS.gene82769 | 0.842122 | 3.13E-58 | -1.69E-46 |
| MS.gene056846 | MS.gene83703 | 0.802861 | 4.59E-49 | -1.69E-46 |
| MS.gene056846 | MS.gene86055 | 0.821606 | 3.69E-53 | -1.69E-46 |
| MS.gene056846 | MS.gene87268 | 0.816121 | 6.51E-52 | -1.69E-46 |
| MS.gene056846 | MS.gene89914 | 0.806656 | 7.40E-50 | -1.69E-46 |
| MS.gene056846 | MS.gene91483 | 0.814092 | 1.84E-51 | -1.69E-46 |
| MS.gene056846 | MS.gene96276 | 0.809166 | 2.16E-50 | -1.69E-46 |
| MS.gene056846 | MS.gene97940 | 0.80208 | 6.65E-49 | -1.69E-46 |
| MS.gene056846 | MS.gene99819 | 0.829538 | 4.87E-55 | -1.69E-46 |
| MS.gene056846 | MS.gene99854 | 0.813162 | 2.94E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056846.t1 | MTR_1g060720 | 88.106 | 227 | 18 | 4 | 1 | 221 | 1 | 224 | 8.53e-129 | 364 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056846.t1 | AT1G16445 | 66.477 | 176 | 57 | 1 | 48 | 221 | 57 | 232 | 2.87e-82 | 246 |
Find 46 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGACTGTATCTCCTTTC+TGG | 0.196980 | 1.1:+46158698 | None:intergenic |
| CACCTTAGCATTGCGCAATT+TGG | 0.227250 | 1.1:-46158650 | MS.gene056846:CDS |
| AGATAAGACTTCACTGTTAC+TGG | 0.271461 | 1.1:-46158569 | MS.gene056846:CDS |
| AGAGAAGCAACATTGATTTC+TGG | 0.299262 | 1.1:+46159631 | None:intergenic |
| CAATATTTGCCATAGTAAAA+TGG | 0.299706 | 1.1:-46157850 | MS.gene056846:CDS |
| AGGCTTGTTGCCTTCAACTT+AGG | 0.315106 | 1.1:-46156902 | MS.gene056846:CDS |
| ACCTGAAAAGGGAGAATCTT+TGG | 0.326774 | 1.1:+46159559 | None:intergenic |
| AAGATCAGAAACAACATTAC+TGG | 0.374699 | 1.1:-46156846 | MS.gene056846:CDS |
| TTCAACTTAGGTTATCTTCC+GGG | 0.393992 | 1.1:-46156890 | MS.gene056846:CDS |
| ATGTAAATGGGTACCTGAAA+AGG | 0.416447 | 1.1:+46159547 | None:intergenic |
| GCTTCCTCTTTGGAAAGAAA+AGG | 0.421759 | 1.1:-46159429 | MS.gene056846:CDS |
| CTTCAACTTAGGTTATCTTC+CGG | 0.423144 | 1.1:-46156891 | MS.gene056846:CDS |
| CTCAGTAGTCCTCACCTCAT+TGG | 0.433397 | 1.1:+46158531 | None:intergenic |
| CTGGAGATGTTGGTTGGAGA+AGG | 0.436964 | 1.1:+46159650 | None:intergenic |
| TGGAGAAAGAAGAAGATTGA+AGG | 0.442468 | 1.1:+46159579 | None:intergenic |
| TGTTGGTTGGAGAAGGAAGA+AGG | 0.450022 | 1.1:+46159657 | None:intergenic |
| CTTCCTCTTTGGAAAGAAAA+GGG | 0.462185 | 1.1:-46159428 | MS.gene056846:CDS |
| TTAGCATAGTGGTTTATGTC+GGG | 0.463191 | 1.1:-46156781 | MS.gene056846:CDS |
| GTTGCTGATGAGTCACATAA+TGG | 0.464226 | 1.1:-46158628 | MS.gene056846:CDS |
| AAGAAATATTACCGTCCACC+AGG | 0.491363 | 1.1:+46156755 | None:intergenic |
| CGGAAGATAACCTAAGTTGA+AGG | 0.503757 | 1.1:+46156892 | None:intergenic |
| TTGGAGAAGGAAGAAGGAAG+AGG | 0.510509 | 1.1:+46159663 | None:intergenic |
| AACCAAATTGCGCAATGCTA+AGG | 0.516356 | 1.1:+46158648 | None:intergenic |
| TGATTTCTGGAGATGTTGGT+TGG | 0.525157 | 1.1:+46159644 | None:intergenic |
| ATTATTTCTTTGTTACCTCC+CGG | 0.527941 | 1.1:+46156872 | None:intergenic |
| AGGAGGGCTTATTAGCATAG+TGG | 0.534041 | 1.1:-46156792 | MS.gene056846:CDS |
| TGGAAACATGTTGTCCAGAA+AGG | 0.540821 | 1.1:-46158712 | MS.gene056846:CDS |
| TGTAAATGGGTACCTGAAAA+GGG | 0.548833 | 1.1:+46159548 | None:intergenic |
| TTCAAAGCAATGCCTACGTT+AGG | 0.555593 | 1.1:-46157818 | MS.gene056846:intron |
| ACATTGATTTCTGGAGATGT+TGG | 0.556359 | 1.1:+46159640 | None:intergenic |
| ATTAGCATAGTGGTTTATGT+CGG | 0.565881 | 1.1:-46156782 | MS.gene056846:CDS |
| ACTATGCTAATAAGCCCTCC+TGG | 0.566809 | 1.1:+46156794 | None:intergenic |
| GTTTATGTCGGGCACCCTGG+TGG | 0.569259 | 1.1:-46156770 | MS.gene056846:CDS |
| TAATGGTTATGTGTACGCAT+TGG | 0.580443 | 1.1:-46158611 | MS.gene056846:CDS |
| ATTGATGCGACATGTGGCAA+CGG | 0.582874 | 1.1:-46158679 | MS.gene056846:CDS |
| ATGTCGGGCACCCTGGTGGA+CGG | 0.586367 | 1.1:-46156766 | MS.gene056846:CDS |
| GTGGTTTATGTCGGGCACCC+TGG | 0.587189 | 1.1:-46156773 | MS.gene056846:CDS |
| GCAAAGAGAATTCTAATACC+AGG | 0.619973 | 1.1:-46156812 | MS.gene056846:CDS |
| ACAGTCATTGATGCGACATG+TGG | 0.653812 | 1.1:-46158685 | MS.gene056846:CDS |
| AGAAATATTACCGTCCACCA+GGG | 0.662031 | 1.1:+46156756 | None:intergenic |
| AACTTAGGTTATCTTCCGGG+AGG | 0.667302 | 1.1:-46156887 | MS.gene056846:CDS |
| GAAAATTGAGTACCTAACGT+AGG | 0.670575 | 1.1:+46157806 | None:intergenic |
| AGAGAATTCTAATACCAGGA+GGG | 0.674542 | 1.1:-46156808 | MS.gene056846:CDS |
| TATTTGCCATAGTAAAATGG+AGG | 0.679977 | 1.1:-46157847 | MS.gene056846:CDS |
| AAGAGAATTCTAATACCAGG+AGG | 0.699018 | 1.1:-46156809 | MS.gene056846:CDS |
| AGAATCGCTTAGTTCCAATG+AGG | 0.719596 | 1.1:-46158545 | MS.gene056846:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTATTATTATTTTGTTTAA+TGG | + | chr1.1:46156878-46156897 | None:intergenic | 10.0% |
| !!! | TTATTTTCTTTATGTATTAT+TGG | - | chr1.1:46159458-46159477 | MS.gene056846:intron | 10.0% |
| !! | AAAACATATTTATAAAGTGA+GGG | + | chr1.1:46158271-46158290 | None:intergenic | 15.0% |
| !! | AATTAATTATATAATAGCTC+AGG | + | chr1.1:46159389-46159408 | None:intergenic | 15.0% |
| !! | TAAAACATATTTATAAAGTG+AGG | + | chr1.1:46158272-46158291 | None:intergenic | 15.0% |
| !! | TAGTAAAATTTAAAAGAGTT+TGG | + | chr1.1:46159070-46159089 | None:intergenic | 15.0% |
| !!! | GTTTTTATCAATAACTAATA+TGG | - | chr1.1:46159106-46159125 | MS.gene056846:intron | 15.0% |
| !!! | TAAAGAAAATAATTTTACCA+TGG | + | chr1.1:46159450-46159469 | None:intergenic | 15.0% |
| !! | AAACATATTTATAAAGTGAG+GGG | + | chr1.1:46158270-46158289 | None:intergenic | 20.0% |
| !! | AAATGGAATAAATCAAATGT+TGG | + | chr1.1:46158959-46158978 | None:intergenic | 20.0% |
| !! | ACGAATAAAATGAAAGTAAA+AGG | - | chr1.1:46159273-46159292 | MS.gene056846:intron | 20.0% |
| !! | CTGAAAATATCAATATACAA+CGG | + | chr1.1:46158390-46158409 | None:intergenic | 20.0% |
| !! | TTAACAGAATGATCATTAAA+AGG | + | chr1.1:46158557-46158576 | None:intergenic | 20.0% |
| !!! | AACATTTGATTTATTCCATT+TGG | - | chr1.1:46158958-46158977 | MS.gene056846:intron | 20.0% |
| !!! | ATTATTCATCTTTTCTTCAA+TGG | + | chr1.1:46159211-46159230 | None:intergenic | 20.0% |
| !!! | TCATTGATTCTATAATAGTT+TGG | - | chr1.1:46157547-46157566 | MS.gene056846:intron | 20.0% |
| ! | AACACTATAAGGATGTAAAT+GGG | + | chr1.1:46156944-46156963 | None:intergenic | 25.0% |
| ! | AAGCATTTCTTGAAACTTTA+AGG | - | chr1.1:46159510-46159529 | MS.gene056846:intron | 25.0% |
| ! | AATATGTGTAAATAGTCACA+TGG | - | chr1.1:46158888-46158907 | MS.gene056846:intron | 25.0% |
| ! | AATCCTGAAAACATGAAAAA+AGG | + | chr1.1:46157010-46157029 | None:intergenic | 25.0% |
| ! | ATATGTGTAAATAGTCACAT+GGG | - | chr1.1:46158889-46158908 | MS.gene056846:intron | 25.0% |
| ! | ATCCTGAAAACATGAAAAAA+GGG | + | chr1.1:46157009-46157028 | None:intergenic | 25.0% |
| ! | CAATATTTGCCATAGTAAAA+TGG | - | chr1.1:46158626-46158645 | MS.gene056846:CDS | 25.0% |
| ! | GCTGAAAATGTATACATAAA+AGG | + | chr1.1:46157526-46157545 | None:intergenic | 25.0% |
| ! | TACACATATTCAATTACACT+TGG | + | chr1.1:46158878-46158897 | None:intergenic | 25.0% |
| ! | TCAGTTTGATCATTTATAGA+AGG | + | chr1.1:46158471-46158490 | None:intergenic | 25.0% |
| ! | TGATAAAAACTGTATAGCTA+AGG | + | chr1.1:46159096-46159115 | None:intergenic | 25.0% |
| ! | TTAAAACCCTCATTTGAATA+AGG | - | chr1.1:46157156-46157175 | MS.gene056846:intron | 25.0% |
| ! | TTATATAATAGCTCAGGTTA+TGG | + | chr1.1:46159383-46159402 | None:intergenic | 25.0% |
| ! | TTTGATCATTTATAGAAGGA+TGG | + | chr1.1:46158467-46158486 | None:intergenic | 25.0% |
| !!! | TAATGTATTGTTGTTGCTTT+TGG | - | chr1.1:46159171-46159190 | MS.gene056846:intron | 25.0% |
| !!! | TTTCATTTGTTTTTGTCAGT+AGG | - | chr1.1:46157196-46157215 | MS.gene056846:intron | 25.0% |
| AAGATCAGAAACAACATTAC+TGG | - | chr1.1:46159630-46159649 | MS.gene056846:CDS | 30.0% | |
| AATATGCTGCATATACATGT+AGG | - | chr1.1:46159554-46159573 | MS.gene056846:intron | 30.0% | |
| AGCAAAACCTTATTCAAATG+AGG | + | chr1.1:46157166-46157185 | None:intergenic | 30.0% | |
| ATGATGCAAACAACACTATA+AGG | + | chr1.1:46156955-46156974 | None:intergenic | 30.0% | |
| ATTAGCATAGTGGTTTATGT+CGG | - | chr1.1:46159694-46159713 | MS.gene056846:CDS | 30.0% | |
| ATTTAAAAGAGTTTGGTCCA+TGG | + | chr1.1:46159063-46159082 | None:intergenic | 30.0% | |
| CAACACTATAAGGATGTAAA+TGG | + | chr1.1:46156945-46156964 | None:intergenic | 30.0% | |
| CTCTTTGCTTTATCTTTAGA+GGG | - | chr1.1:46157498-46157517 | MS.gene056846:intron | 30.0% | |
| GCAAAACCTTATTCAAATGA+GGG | + | chr1.1:46157165-46157184 | None:intergenic | 30.0% | |
| GTGAAACAAAATTGGAATTG+AGG | + | chr1.1:46158841-46158860 | None:intergenic | 30.0% | |
| TACTTTACTTGATGCATCTT+AGG | - | chr1.1:46157097-46157116 | MS.gene056846:intron | 30.0% | |
| TATTTGCCATAGTAAAATGG+AGG | - | chr1.1:46158629-46158648 | MS.gene056846:CDS | 30.0% | |
| TCTCTTTGCTTTATCTTTAG+AGG | - | chr1.1:46157497-46157516 | MS.gene056846:intron | 30.0% | |
| TGAAGGTTTCAACTTTCAAT+TGG | - | chr1.1:46157971-46157990 | MS.gene056846:intron | 30.0% | |
| ! | ATTATTTCTTTGTTACCTCC+CGG | + | chr1.1:46159607-46159626 | None:intergenic | 30.0% |
| ! | ATTTGTTGCAGAAGTCTATT+GGG | - | chr1.1:46157597-46157616 | MS.gene056846:intron | 30.0% |
| ! | TTTTATGAGAAAACACCTGA+TGG | + | chr1.1:46159140-46159159 | None:intergenic | 30.0% |
| !! | CAGTATTGAATTCTAGAACT+AGG | - | chr1.1:46158525-46158544 | MS.gene056846:intron | 30.0% |
| !!! | TACCCTTTTTTCATGTTTTC+AGG | - | chr1.1:46157004-46157023 | MS.gene056846:intron | 30.0% |
| AAGAGAATTCTAATACCAGG+AGG | - | chr1.1:46159667-46159686 | MS.gene056846:CDS | 35.0% | |
| ACATCACATTCTATATGCAG+GGG | + | chr1.1:46157289-46157308 | None:intergenic | 35.0% | |
| AGAATTTGCCACAAACGATT+AGG | + | chr1.1:46157480-46157499 | None:intergenic | 35.0% | |
| AGAGAATTCTAATACCAGGA+GGG | - | chr1.1:46159668-46159687 | MS.gene056846:CDS | 35.0% | |
| AGATAAGACTTCACTGTTAC+TGG | - | chr1.1:46157907-46157926 | MS.gene056846:intron | 35.0% | |
| AGCCTCTTGTGTAAAAAACA+GGG | + | chr1.1:46158179-46158198 | None:intergenic | 35.0% | |
| ATAGACTTCTGCAACAAATG+TGG | + | chr1.1:46157596-46157615 | None:intergenic | 35.0% | |
| ATGTAAATGGGTACCTGAAA+AGG | + | chr1.1:46156932-46156951 | None:intergenic | 35.0% | |
| CTTCAACTTAGGTTATCTTC+CGG | - | chr1.1:46159585-46159604 | MS.gene056846:CDS | 35.0% | |
| CTTGTGTAAAAAACAGGGTA+AGG | + | chr1.1:46158174-46158193 | None:intergenic | 35.0% | |
| GAAAATTGAGTACCTAACGT+AGG | + | chr1.1:46158673-46158692 | None:intergenic | 35.0% | |
| GACATCACATTCTATATGCA+GGG | + | chr1.1:46157290-46157309 | None:intergenic | 35.0% | |
| GCAAAGAGAATTCTAATACC+AGG | - | chr1.1:46159664-46159683 | MS.gene056846:CDS | 35.0% | |
| TAATGGTTATGTGTACGCAT+TGG | - | chr1.1:46157865-46157884 | MS.gene056846:CDS | 35.0% | |
| TGGAGAAAGAAGAAGATTGA+AGG | + | chr1.1:46156900-46156919 | None:intergenic | 35.0% | |
| TGTAAATGGGTACCTGAAAA+GGG | + | chr1.1:46156931-46156950 | None:intergenic | 35.0% | |
| TTAGCATAGTGGTTTATGTC+GGG | - | chr1.1:46159695-46159714 | MS.gene056846:CDS | 35.0% | |
| TTCAACTTAGGTTATCTTCC+GGG | - | chr1.1:46159586-46159605 | MS.gene056846:CDS | 35.0% | |
| TTCCCACTTATTCACCTTAA+GGG | + | chr1.1:46157246-46157265 | None:intergenic | 35.0% | |
| TTTCCCACTTATTCACCTTA+AGG | + | chr1.1:46157247-46157266 | None:intergenic | 35.0% | |
| ! | CAACTTCCTCCATTTTACTA+TGG | + | chr1.1:46158638-46158657 | None:intergenic | 35.0% |
| ! | CATTTGTTGCAGAAGTCTAT+TGG | - | chr1.1:46157596-46157615 | MS.gene056846:intron | 35.0% |
| ! | CTTCCTCTTTGGAAAGAAAA+GGG | - | chr1.1:46157048-46157067 | MS.gene056846:intron | 35.0% |
| ! | TCATCTTTTCTTCAATGGTG+AGG | + | chr1.1:46159206-46159225 | None:intergenic | 35.0% |
| !! | ACATTGATTTCTGGAGATGT+TGG | + | chr1.1:46156839-46156858 | None:intergenic | 35.0% |
| !! | AGAGAAGCAACATTGATTTC+TGG | + | chr1.1:46156848-46156867 | None:intergenic | 35.0% |
| !!! | TACCCTGTTTTTTACACAAG+AGG | - | chr1.1:46158174-46158193 | MS.gene056846:intron | 35.0% |
| !!! | TATTGTTTTTGCTCCTACCA+GGG | - | chr1.1:46157739-46157758 | MS.gene056846:intron | 35.0% |
| !!! | TGTTTTAAAAAAGGGCAACC+CGG | - | chr1.1:46158082-46158101 | MS.gene056846:intron | 35.0% |
| !!! | TTATTGTTTTTGCTCCTACC+AGG | - | chr1.1:46157738-46157757 | MS.gene056846:intron | 35.0% |
| AACCAAATTGCGCAATGCTA+AGG | + | chr1.1:46157831-46157850 | None:intergenic | 40.0% | |
| AATATGGATCTCACTCCATC+AGG | - | chr1.1:46159122-46159141 | MS.gene056846:intron | 40.0% | |
| ACCTGAAAAGGGAGAATCTT+TGG | + | chr1.1:46156920-46156939 | None:intergenic | 40.0% | |
| AGAATCGCTTAGTTCCAATG+AGG | - | chr1.1:46157931-46157950 | MS.gene056846:intron | 40.0% | |
| AGGTGAATAAGTGGGAAATC+TGG | - | chr1.1:46157249-46157268 | MS.gene056846:intron | 40.0% | |
| CAATGACTGTATCTCCTTTC+TGG | + | chr1.1:46157781-46157800 | None:intergenic | 40.0% | |
| CACCCTTAAGGTGAATAAGT+GGG | - | chr1.1:46157241-46157260 | MS.gene056846:intron | 40.0% | |
| CAGAAAATATCACCGCAAAC+CGG | - | chr1.1:46158359-46158378 | MS.gene056846:intron | 40.0% | |
| CAGAGAGATGATGCAAGTTA+AGG | + | chr1.1:46158695-46158714 | None:intergenic | 40.0% | |
| CAGCCTCTTGTGTAAAAAAC+AGG | + | chr1.1:46158180-46158199 | None:intergenic | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr1.1:46158148-46158167 | None:intergenic | 40.0% | |
| GAGCTAGAAATTCACCCTTA+AGG | - | chr1.1:46157229-46157248 | MS.gene056846:intron | 40.0% | |
| GCACGCAAGTGAAACAAAAT+TGG | + | chr1.1:46158849-46158868 | None:intergenic | 40.0% | |
| GGACATCACATTCTATATGC+AGG | + | chr1.1:46157291-46157310 | None:intergenic | 40.0% | |
| GGTGAATAAGTGGGAAATCT+GGG | - | chr1.1:46157250-46157269 | MS.gene056846:intron | 40.0% | |
| GTGAATAAGTGGGAAATCTG+GGG | - | chr1.1:46157251-46157270 | MS.gene056846:intron | 40.0% | |
| GTTGCTGATGAGTCACATAA+TGG | - | chr1.1:46157848-46157867 | MS.gene056846:CDS | 40.0% | |
| TAAAAGAGTTTGGTCCATGG+AGG | + | chr1.1:46159060-46159079 | None:intergenic | 40.0% | |
| TACGAAGTCCTAATCGTTTG+TGG | - | chr1.1:46157469-46157488 | MS.gene056846:intron | 40.0% | |
| TATAAAGTGAGGGGTAACCT+TGG | + | chr1.1:46158261-46158280 | None:intergenic | 40.0% | |
| TCAATATACAACGGCTTGTC+CGG | + | chr1.1:46158381-46158400 | None:intergenic | 40.0% | |
| TCACCCTTAAGGTGAATAAG+TGG | - | chr1.1:46157240-46157259 | MS.gene056846:intron | 40.0% | |
| TGGAAACATGTTGTCCAGAA+AGG | - | chr1.1:46157764-46157783 | MS.gene056846:intron | 40.0% | |
| TGTAAATAGTCACATGGGCA+TGG | - | chr1.1:46158894-46158913 | MS.gene056846:intron | 40.0% | |
| TTCAAAGCAATGCCTACGTT+AGG | - | chr1.1:46158658-46158677 | MS.gene056846:CDS | 40.0% | |
| TTGAATTTGAGAAGCCTCCA+TGG | - | chr1.1:46159043-46159062 | MS.gene056846:intron | 40.0% | |
| ! | CGGAAGATAACCTAAGTTGA+AGG | + | chr1.1:46159587-46159606 | None:intergenic | 40.0% |
| ! | GCTTCCTCTTTGGAAAGAAA+AGG | - | chr1.1:46157047-46157066 | MS.gene056846:intron | 40.0% |
| ! | GTTGTTGTTATGTGACCGAA+AGG | + | chr1.1:46158225-46158244 | None:intergenic | 40.0% |
| ! | GTTTTTGTGAGCTTCCTCTT+TGG | - | chr1.1:46157037-46157056 | MS.gene056846:intron | 40.0% |
| ! | TCCAAAGATTCTCCCTTTTC+AGG | - | chr1.1:46156916-46156935 | MS.gene056846:intron | 40.0% |
| ! | TGATTTCTGGAGATGTTGGT+TGG | + | chr1.1:46156835-46156854 | None:intergenic | 40.0% |
| ! | TTGCCCTTTTCTTTCCAAAG+AGG | + | chr1.1:46157054-46157073 | None:intergenic | 40.0% |
| ! | TTTTCTTCAATGGTGAGGCT+TGG | + | chr1.1:46159201-46159220 | None:intergenic | 40.0% |
| !! | GAGCATAACTCAAGTTGGTA+GGG | + | chr1.1:46157312-46157331 | None:intergenic | 40.0% |
| !! | TGAGCATAACTCAAGTTGGT+AGG | + | chr1.1:46157313-46157332 | None:intergenic | 40.0% |
| !! | TGTTTTTGTCAGTAGGCTAG+TGG | - | chr1.1:46157203-46157222 | MS.gene056846:intron | 40.0% |
| AACTTAGGTTATCTTCCGGG+AGG | - | chr1.1:46159589-46159608 | MS.gene056846:CDS | 45.0% | |
| AATAGTCACATGGGCATGGT+CGG | - | chr1.1:46158898-46158917 | MS.gene056846:intron | 45.0% | |
| ACAGTCATTGATGCGACATG+TGG | - | chr1.1:46157791-46157810 | MS.gene056846:intron | 45.0% | |
| ACATGTTTCCATACCCTGGT+AGG | + | chr1.1:46157755-46157774 | None:intergenic | 45.0% | |
| ACTATGCTAATAAGCCCTCC+TGG | + | chr1.1:46159685-46159704 | None:intergenic | 45.0% | |
| AGGAGGGCTTATTAGCATAG+TGG | - | chr1.1:46159684-46159703 | MS.gene056846:CDS | 45.0% | |
| ATTGATGCGACATGTGGCAA+CGG | - | chr1.1:46157797-46157816 | MS.gene056846:intron | 45.0% | |
| CACCTTAGCATTGCGCAATT+TGG | - | chr1.1:46157826-46157845 | MS.gene056846:CDS | 45.0% | |
| GACAACATGTTTCCATACCC+TGG | + | chr1.1:46157759-46157778 | None:intergenic | 45.0% | |
| GCAGAAGTCTATTGGGCAAT+GGG | - | chr1.1:46157604-46157623 | MS.gene056846:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | chr1.1:46158149-46158168 | None:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | + | chr1.1:46158152-46158171 | None:intergenic | 45.0% | |
| GCTTGACATAGCGTTCCAAA+TGG | + | chr1.1:46158976-46158995 | None:intergenic | 45.0% | |
| GTTAGCTGTGCTTGTAACCA+TGG | - | chr1.1:46159430-46159449 | MS.gene056846:CDS | 45.0% | |
| GTTATGTGACCGAAAGGTCA+CGG | + | chr1.1:46158219-46158238 | None:intergenic | 45.0% | |
| TGCAGAAGTCTATTGGGCAA+TGG | - | chr1.1:46157603-46157622 | MS.gene056846:intron | 45.0% | |
| TGCGTGAGCATAACTCAAGT+TGG | + | chr1.1:46157317-46157336 | None:intergenic | 45.0% | |
| TGGAACGCTATGTCAAGCAA+TGG | - | chr1.1:46158978-46158997 | MS.gene056846:intron | 45.0% | |
| TTATGTGACCGAAAGGTCAC+GGG | + | chr1.1:46158218-46158237 | None:intergenic | 45.0% | |
| TTGGAGAAGGAAGAAGGAAG+AGG | + | chr1.1:46156816-46156835 | None:intergenic | 45.0% | |
| ! | TGTTGGTTGGAGAAGGAAGA+AGG | + | chr1.1:46156822-46156841 | None:intergenic | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | - | chr1.1:46158185-46158204 | MS.gene056846:intron | 45.0% |
| ! | TTTTTGCTCCTACCAGGGTA+TGG | - | chr1.1:46157744-46157763 | MS.gene056846:intron | 45.0% |
| !! | AGGCTTGTTGCCTTCAACTT+AGG | - | chr1.1:46159574-46159593 | MS.gene056846:CDS | 45.0% |
| !!! | TATAAATATGTTTTAAAAAA+GGG | - | chr1.1:46158074-46158093 | MS.gene056846:intron | 5.0% |
| !!! | TTATAAATATGTTTTAAAAA+AGG | - | chr1.1:46158073-46158092 | MS.gene056846:intron | 5.0% |
| !!! | TTATTATTATTTTGTTTAAT+GGG | + | chr1.1:46156877-46156896 | None:intergenic | 5.0% |
| ACATTCTATATGCAGGGGCC+GGG | + | chr1.1:46157284-46157303 | None:intergenic | 50.0% | |
| ACTGAAGCTCCCTCATATGC+AGG | - | chr1.1:46158108-46158127 | MS.gene056846:intron | 50.0% | |
| ATAGTCACATGGGCATGGTC+GGG | - | chr1.1:46158899-46158918 | MS.gene056846:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | chr1.1:46158241-46158260 | MS.gene056846:intron | 50.0% | |
| CAATGAGGTGAGGACTACTG+AGG | - | chr1.1:46157946-46157965 | MS.gene056846:intron | 50.0% | |
| CACATTCTATATGCAGGGGC+CGG | + | chr1.1:46157285-46157304 | None:intergenic | 50.0% | |
| CGCTTAGTTCCAATGAGGTG+AGG | - | chr1.1:46157936-46157955 | MS.gene056846:intron | 50.0% | |
| CTCAGTAGTCCTCACCTCAT+TGG | + | chr1.1:46157948-46157967 | None:intergenic | 50.0% | |
| CTGAAGCTCCCTCATATGCA+GGG | - | chr1.1:46158109-46158128 | MS.gene056846:intron | 50.0% | |
| GACTTGAACCCGTGACCTTT+CGG | - | chr1.1:46158207-46158226 | MS.gene056846:intron | 50.0% | |
| TGAGGACTACTGAGGAGTGA+AGG | - | chr1.1:46157954-46157973 | MS.gene056846:intron | 50.0% | |
| ! | CGGGCTTTAGTGGATGATTG+TGG | - | chr1.1:46158918-46158937 | MS.gene056846:intron | 50.0% |
| ! | CTGGAGATGTTGGTTGGAGA+AGG | + | chr1.1:46156829-46156848 | None:intergenic | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | + | chr1.1:46158206-46158225 | None:intergenic | 55.0% | |
| ATGAGGGAGCTTCAGTGCAC+CGG | + | chr1.1:46158104-46158123 | None:intergenic | 55.0% | |
| CATTCTATATGCAGGGGCCG+GGG | + | chr1.1:46157283-46157302 | None:intergenic | 55.0% | |
| TCATATGCAGGGTCCGGGAA+GGG | - | chr1.1:46158120-46158139 | MS.gene056846:intron | 55.0% | |
| TTCCCGGACCCTGCATATGA+GGG | + | chr1.1:46158120-46158139 | None:intergenic | 55.0% | |
| ! | ACAACGGCTTGTCCGGTTTG+CGG | + | chr1.1:46158374-46158393 | None:intergenic | 55.0% |
| ! | GAAATCTGGGGTTCGAACCC+CGG | - | chr1.1:46157263-46157282 | MS.gene056846:intron | 55.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | + | chr1.1:46158252-46158271 | None:intergenic | 60.0% | |
| CATATGCAGGGTCCGGGAAG+GGG | - | chr1.1:46158121-46158140 | MS.gene056846:intron | 60.0% | |
| CTCATATGCAGGGTCCGGGA+AGG | - | chr1.1:46158119-46158138 | MS.gene056846:intron | 60.0% | |
| CTCCCTCATATGCAGGGTCC+GGG | - | chr1.1:46158115-46158134 | MS.gene056846:intron | 60.0% | |
| CTTCCCGGACCCTGCATATG+AGG | + | chr1.1:46158121-46158140 | None:intergenic | 60.0% | |
| GCTCCCTCATATGCAGGGTC+CGG | - | chr1.1:46158114-46158133 | MS.gene056846:intron | 60.0% | |
| GTGGTTTATGTCGGGCACCC+TGG | - | chr1.1:46159703-46159722 | MS.gene056846:CDS | 60.0% | |
| GTTTATGTCGGGCACCCTGG+TGG | - | chr1.1:46159706-46159725 | MS.gene056846:CDS | 60.0% | |
| TGAGGGAGCTTCAGTGCACC+GGG | + | chr1.1:46158103-46158122 | None:intergenic | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | + | chr1.1:46158136-46158155 | None:intergenic | 60.0% |
| ! | TGGGCATGGTCGGGCTTTAG+TGG | - | chr1.1:46158908-46158927 | MS.gene056846:intron | 60.0% |
| ATGTCGGGCACCCTGGTGGA+CGG | - | chr1.1:46159710-46159729 | MS.gene056846:CDS | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | - | chr1.1:46158134-46158153 | MS.gene056846:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 46156763 | 46159735 | 46156763 | ID=MS.gene056846 |
| chr1.1 | mRNA | 46156763 | 46159735 | 46156763 | ID=MS.gene056846.t1;Parent=MS.gene056846 |
| chr1.1 | exon | 46159561 | 46159735 | 46159561 | ID=MS.gene056846.t1.exon1;Parent=MS.gene056846.t1 |
| chr1.1 | CDS | 46159561 | 46159735 | 46159561 | ID=cds.MS.gene056846.t1;Parent=MS.gene056846.t1 |
| chr1.1 | exon | 46159409 | 46159472 | 46159409 | ID=MS.gene056846.t1.exon2;Parent=MS.gene056846.t1 |
| chr1.1 | CDS | 46159409 | 46159472 | 46159409 | ID=cds.MS.gene056846.t1;Parent=MS.gene056846.t1 |
| chr1.1 | exon | 46158546 | 46158738 | 46158546 | ID=MS.gene056846.t1.exon3;Parent=MS.gene056846.t1 |
| chr1.1 | CDS | 46158546 | 46158738 | 46158546 | ID=cds.MS.gene056846.t1;Parent=MS.gene056846.t1 |
| chr1.1 | exon | 46157819 | 46157892 | 46157819 | ID=MS.gene056846.t1.exon4;Parent=MS.gene056846.t1 |
| chr1.1 | CDS | 46157819 | 46157892 | 46157819 | ID=cds.MS.gene056846.t1;Parent=MS.gene056846.t1 |
| chr1.1 | exon | 46156763 | 46156922 | 46156763 | ID=MS.gene056846.t1.exon5;Parent=MS.gene056846.t1 |
| chr1.1 | CDS | 46156763 | 46156922 | 46156763 | ID=cds.MS.gene056846.t1;Parent=MS.gene056846.t1 |
| Gene Sequence |
| Protein sequence |
