AlfalfaGEDB | MS.gene59329

M. sativa cultivar XinJiangDaYe / MS.gene59329

KEGG: K10579
GO: -
PFAM: PF00179.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59329.t1	XP_013453519.1	100	183	0	0	1	183	1	183	5.90E-104	386.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59329.t1	Q9SDY5	85.9	184	25	1	1	183	1	184	5.8e-92	338.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59329.t1	G7KC51	100.0	183	0	0	1	183	4	186	4.2e-104	386.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052309	MS.gene59329	0.805895	1.07E-49	-1.69E-46
MS.gene052358	MS.gene59329	0.812352	4.43E-51	-1.69E-46
MS.gene052673	MS.gene59329	0.821662	3.58E-53	-1.69E-46
MS.gene053054	MS.gene59329	0.81018	1.31E-50	-1.69E-46
MS.gene054291	MS.gene59329	0.804535	2.06E-49	-1.69E-46
MS.gene05954	MS.gene59329	-0.820991	5.12E-53	-1.69E-46
MS.gene060137	MS.gene59329	0.830521	2.80E-55	-1.69E-46
MS.gene060634	MS.gene59329	0.862229	5.87E-64	-1.69E-46
MS.gene061040	MS.gene59329	0.833608	4.84E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59329.t1	MTR_5g019480	100.000	183	0	0	1	183	4	186	2.48e-138	383
MS.gene59329.t1	MTR_5g019480	100.000	183	0	0	1	183	1	183	3.03e-138	383
MS.gene59329.t1	MTR_5g019480	100.000	135	0	0	49	183	1	135	7.99e-101	286
MS.gene59329.t1	MTR_4g073240	38.971	136	80	2	33	166	5	139	2.32e-28	103
MS.gene59329.t1	MTR_1g021150	36.765	136	83	2	33	166	5	139	5.18e-27	100
MS.gene59329.t1	MTR_5g075580	36.765	136	83	2	33	166	5	139	3.17e-26	98.2
MS.gene59329.t1	MTR_3g062450	36.765	136	83	2	33	166	5	139	3.38e-26	98.2
MS.gene59329.t1	MTR_8g071040	35.766	137	83	3	33	166	5	139	5.03e-26	97.4
MS.gene59329.t1	MTR_7g116940	36.029	136	84	2	33	166	5	139	7.26e-26	97.1
MS.gene59329.t1	MTR_4g073240	42.308	104	60	0	63	166	7	110	7.31e-26	96.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59329.t1	AT4G36800	85.870	184	25	1	1	183	1	184	1.83e-120	338
MS.gene59329.t1	AT4G36800	85.870	184	25	1	1	183	1	184	1.83e-120	338
MS.gene59329.t1	AT2G18600	83.243	185	29	1	1	183	1	185	1.60e-113	320
MS.gene59329.t1	AT2G18600	83.243	185	29	1	1	183	1	185	1.60e-113	320
MS.gene59329.t1	AT5G56150	36.029	136	84	2	33	166	5	139	1.08e-26	99.4
MS.gene59329.t1	AT3G08690	37.500	136	82	2	33	166	5	139	3.04e-26	98.2
MS.gene59329.t1	AT3G08690	37.500	136	82	2	33	166	5	139	3.04e-26	98.2
MS.gene59329.t1	AT4G27960	36.765	136	83	2	33	166	5	139	3.25e-26	98.2
MS.gene59329.t1	AT2G16740	36.765	136	83	2	33	166	5	139	3.39e-26	98.2
MS.gene59329.t1	AT5G41700	35.294	136	86	1	33	166	5	140	3.80e-26	97.8

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Find 50 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGTGAGGAGGGCAATGTC+TGG	0.519089	5.4:+11808144	MS.gene59329:CDS
AATATAAACACTGTCATCTA+TGG	0.349971	5.4:+11807934	MS.gene59329:CDS
AATTGCATGGTGCAAGACTT+TGG	0.456157	5.4:-11807331	None:intergenic
ACAGTGTTTATATTAAGGAC+AGG	0.514717	5.4:-11807925	None:intergenic
ACGTTAGATTCAAACATCTT+TGG	0.304621	5.4:-11808126	None:intergenic
AGATGACAGTGTTTATATTA+AGG	0.283684	5.4:-11807930	None:intergenic
AGATGTTTGAATCTAACGTG+AGG	0.675157	5.4:+11808130	MS.gene59329:CDS
AGCAGCGGCATCATGATTCA+GGG	0.539634	5.4:-11808088	None:intergenic
AGCATGGTTTACATACAGCG+GGG	0.717629	5.4:-11808192	None:intergenic
ATAGATGGGAGACACATTGA+AGG	0.544925	5.4:-11807685	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAAAGGAGGAAGAGAA+TGG	-	chr5.4:11806182-11806201	None:intergenic	30.0%
AAATAAAGGAGGAAGAGAAT+GGG	-	chr5.4:11806181-11806200	None:intergenic	30.0%
ACAGTGTTTATATTAAGGAC+AGG	-	chr5.4:11807928-11807947	None:intergenic	30.0%
ACATGATATAAAGACAGCAT+AGG	-	chr5.4:11807510-11807529	None:intergenic	30.0%
ACGTTAGATTCAAACATCTT+TGG	-	chr5.4:11808129-11808148	None:intergenic	30.0%
ATTAGTCAGCTTAAACATGT+AGG	+	chr5.4:11807111-11807130	MS.gene59329:intron	30.0%
CATGATATAAAGACAGCATA+GGG	-	chr5.4:11807509-11807528	None:intergenic	30.0%
GGTTATCACTTAACAAGTAT+AGG	-	chr5.4:11806901-11806920	None:intergenic	30.0%
GTATCATTATGTGTATATGC+AGG	+	chr5.4:11807837-11807856	MS.gene59329:intron	30.0%
TAAAATCCACCATAAGAGTA+TGG	-	chr5.4:11806480-11806499	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	11805551	11808206	11805551	ID=MS.gene59329
chr5.4	mRNA	11805551	11808206	11805551	ID=MS.gene59329.t1;Parent=MS.gene59329
chr5.4	exon	11805551	11805659	11805551	ID=MS.gene59329.t1.exon1;Parent=MS.gene59329.t1
chr5.4	CDS	11805551	11805659	11805551	ID=cds.MS.gene59329.t1;Parent=MS.gene59329.t1
chr5.4	exon	11807311	11807419	11807311	ID=MS.gene59329.t1.exon2;Parent=MS.gene59329.t1
chr5.4	CDS	11807311	11807419	11807311	ID=cds.MS.gene59329.t1;Parent=MS.gene59329.t1
chr5.4	exon	11807665	11807743	11807665	ID=MS.gene59329.t1.exon3;Parent=MS.gene59329.t1
chr5.4	CDS	11807665	11807743	11807665	ID=cds.MS.gene59329.t1;Parent=MS.gene59329.t1
chr5.4	exon	11807859	11807975	11807859	ID=MS.gene59329.t1.exon4;Parent=MS.gene59329.t1
chr5.4	CDS	11807859	11807975	11807859	ID=cds.MS.gene59329.t1;Parent=MS.gene59329.t1
chr5.4	exon	11808069	11808206	11808069	ID=MS.gene59329.t1.exon5;Parent=MS.gene59329.t1
chr5.4	CDS	11808069	11808206	11808069	ID=cds.MS.gene59329.t1;Parent=MS.gene59329.t1

Gene Sequence

>MS.gene59329

ATGATTAAACTATTTAAAGTAAAGGAAAAGCAAAGAGAACAAGCTGAAAATGCCAGTAATGGAGTACCTGTTAAGAAGCAAAGTGCTGGCGAGTTGCGTCTTCACAAAGGTTACCTTCTTATTAAATTGTTTACTTTTTTTGTGTTTCATTGTGTTAAATTTGTGTGGCACTTGCCCCTACCCATGGCCAGAATACTTGAATCGAGAGGGAAAGGTGAACAATAAAGGTTTAGTGCTAATGTGTAGTTGCCATAGCAGGAATTTTTTGGGGGCTTCGTTGTTTGGGCCTTGGAGTGTGACTGGAGAGGATGCCAGCGAGAATGAAATCCAGAAATAAATTACACAAATATCTTGGCTGTTTCATTTGACTACCGAAGATATATGTTTTGGTTTGCTGCTTTACATTCTAGAAGTTTTTACTTGATATAGGATGAAAATGAAAAGCATAATCTACATAATGTAGTTAGGTTTTGAACAGAACATTTTTTTTTTTTTTTTTTCACACTGAATGTCATACAGCTTGCATTTTGTAATATTGCAGCTGCTCTCACAATCATCTCCTGCAATTGTGGTCTCTTCTCTAGTGAACGACCAGTCTTCAGTAAACTGTGGATATTTAATGATTGGCCCATTCTCTTCCTCCTTTATTTTTCAGAGTCTTAATCGCTGTCTATCTCTCTATTTCCTTTTCATCCCTATTTATATATTTCTTTCTTTGTGACTCTGTCCTCATTGTTAATTGATTCAAGAGCTGCTAACAATGATACTTTTGGTGAATTTAATTTCTTGCAATATGTTTCTAGTTTATCGCTCTTGAAAGTTATTAGTTCTTTTTCTATTTTGTTAATTCTGCAGTTTTTGTGTGTGTGTATGTTATACTCCTATGAAAACCTCCATGCTTCTACTATAAGCTGCAATGTCATCTGCCATACTCTTATGGTGGATTTTAGGCTTGCGCCATGTACCACCATCATCCTCTAATAACATTGCATAAAATGAGTAAAATTGGACAAAGGTAGATGTATGTTGTTTTATTATTTTTTCGGATGAGACGCAGAAAGAAACAAGGTAGAGATAAGTGAATGGAAAACCTTGAGATTGTGGTAGTAAGAATGATCTAGGTTAGCAAGGTTGCATTGTTTTCCGTGAAAATTTACTGTAGGCTCTCCTGCTTTGAGGAGGACAGGGACCAGATAGTTTATTGTTGAATGATTTTTAATTTAAATATTGTGTATTCTCACGGTATATTATGACAAAAGAAAATTGTAGAAGCAAATAATGATTCCTATATTTGATTTTCTTCTGTTCTGGTGGCCGTGAAGTGTGAATGCTCTTATGCTTGGAGTGCCTATACTTGTTAAGTGATAACCTTGGGGGTGAGAAAACCATGTGATTGTTCTTTTTCTTTCTTGGGCGGCTGTATATTCTCCCAGTATATTTAATGAAGGCTTTTTATCTTGAGAATTGGAGTTTATTCTCAATAACATCCTTAGTAATTTTATTAGTGATTTTTCATGAAAGGAAACTTCTTTTGTGGATAAACAAGTAATTCATCTGACCATTAGTCAGCTTAAACATGTAGGCTGCTATCCTGTGAAGAGTTACAAGCTCACTAGGTGAACTAAGATATCATTTCTCAAGCTGTACTGTTTTTAGCTGCTGTTCTGAGACATTTCTTATGTCGTTTTTCAATCTTTGTCTATAGTTTCCGCCACTTTATTTTGTTATACAAGTCTTTTCACAGTGAATGTTTCTTTCAGATATAAGTGAGCTGAATCTACCAAAGTCTTGCACCATGCAATTTCCCAATGGCAAAGATGACCTGATGAACTTCGAAGTTTTGATTCGACCCGATGATGGATATTACTTGTAAGGAAGTTTCCACTTTATCTTTTTGTTATTTTCTACCTGTAGCCTAACTTTAAAATTGATTCTTGTTTTTAAGGCCTTGATGTCCCTATGCTGTCTTTATATCATGTTATTTGTTTGGTTTGCTTTCATCTTTAAATGCTAAATTAAATGTATAATCTGGTAGTAAGACCTACACGTCACCCTCAAAATGACGAAAAAACAGAAAATCTTGTTAACCACCTCTATGCTGTTTTTTGTTACAGAGGAGGTGCATTTTTGTTTTCCTTCAATGTGTCTCCCATCTATCCACATGAAGCACCCAAGGTGAAGTGCAAGACAAAGGTAGGATCAACTTCGTTATGTATTTGACTACAATTCATGCTTCTGGGTGTCTGCCTTGTTTTCATATTCTGTTTTAATGTAGTAACTTTATTTGTATCATTATGTGTATATGCAGGTCTACCATCCAAATATTGACTTGGAAGGAAATGTGTGTCTCAACATCTTAAGAGAAGACTGGAAACCTGTCCTTAATATAAACACTGTCATCTATGGCTTGTATCATCTCTTCACGGTATGGCTCTGTTTTTTAACATATCAGGGTTTTGATATTTGAACGGGGATACTTGAAATTTATGGACTCTAATCTGTTACTTATTGTGTGCAGGAGCCAAATTACGAGGATCCCCTGAATCATGATGCCGCTGCTGTCTTGAGAGATAATCCAAAGATGTTTGAATCTAACGTGAGGAGGGCAATGTCTGGTGGGTATGTGGGACAAACCTTCTTCCCCCGCTGTATGTAA

Protein sequence

>MS.gene59329.t1

MIKLFKVKEKQREQAENASNGVPVKKQSAGELRLHKDISELNLPKSCTMQFPNGKDDLMNFEVLIRPDDGYYLGGAFLFSFNVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLYHLFTEPNYEDPLNHDAAAVLRDNPKMFESNVRRAMSGGYVGQTFFPRCM