Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59329.t1 | XP_013453519.1 | 100 | 183 | 0 | 0 | 1 | 183 | 1 | 183 | 5.90E-104 | 386.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59329.t1 | Q9SDY5 | 85.9 | 184 | 25 | 1 | 1 | 183 | 1 | 184 | 5.8e-92 | 338.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59329.t1 | G7KC51 | 100.0 | 183 | 0 | 0 | 1 | 183 | 4 | 186 | 4.2e-104 | 386.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052309 | MS.gene59329 | 0.805895 | 1.07E-49 | -1.69E-46 |
MS.gene052358 | MS.gene59329 | 0.812352 | 4.43E-51 | -1.69E-46 |
MS.gene052673 | MS.gene59329 | 0.821662 | 3.58E-53 | -1.69E-46 |
MS.gene053054 | MS.gene59329 | 0.81018 | 1.31E-50 | -1.69E-46 |
MS.gene054291 | MS.gene59329 | 0.804535 | 2.06E-49 | -1.69E-46 |
MS.gene05954 | MS.gene59329 | -0.820991 | 5.12E-53 | -1.69E-46 |
MS.gene060137 | MS.gene59329 | 0.830521 | 2.80E-55 | -1.69E-46 |
MS.gene060634 | MS.gene59329 | 0.862229 | 5.87E-64 | -1.69E-46 |
MS.gene061040 | MS.gene59329 | 0.833608 | 4.84E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59329.t1 | MTR_5g019480 | 100.000 | 183 | 0 | 0 | 1 | 183 | 4 | 186 | 2.48e-138 | 383 |
MS.gene59329.t1 | MTR_5g019480 | 100.000 | 183 | 0 | 0 | 1 | 183 | 1 | 183 | 3.03e-138 | 383 |
MS.gene59329.t1 | MTR_5g019480 | 100.000 | 135 | 0 | 0 | 49 | 183 | 1 | 135 | 7.99e-101 | 286 |
MS.gene59329.t1 | MTR_4g073240 | 38.971 | 136 | 80 | 2 | 33 | 166 | 5 | 139 | 2.32e-28 | 103 |
MS.gene59329.t1 | MTR_1g021150 | 36.765 | 136 | 83 | 2 | 33 | 166 | 5 | 139 | 5.18e-27 | 100 |
MS.gene59329.t1 | MTR_5g075580 | 36.765 | 136 | 83 | 2 | 33 | 166 | 5 | 139 | 3.17e-26 | 98.2 |
MS.gene59329.t1 | MTR_3g062450 | 36.765 | 136 | 83 | 2 | 33 | 166 | 5 | 139 | 3.38e-26 | 98.2 |
MS.gene59329.t1 | MTR_8g071040 | 35.766 | 137 | 83 | 3 | 33 | 166 | 5 | 139 | 5.03e-26 | 97.4 |
MS.gene59329.t1 | MTR_7g116940 | 36.029 | 136 | 84 | 2 | 33 | 166 | 5 | 139 | 7.26e-26 | 97.1 |
MS.gene59329.t1 | MTR_4g073240 | 42.308 | 104 | 60 | 0 | 63 | 166 | 7 | 110 | 7.31e-26 | 96.3 |
MS.gene59329.t1 | MTR_1g021150 | 38.261 | 115 | 71 | 0 | 52 | 166 | 33 | 147 | 5.76e-25 | 95.1 |
MS.gene59329.t1 | MTR_5g075580 | 40.385 | 104 | 62 | 0 | 63 | 166 | 7 | 110 | 1.44e-24 | 92.8 |
MS.gene59329.t1 | MTR_7g116940 | 34.965 | 143 | 83 | 3 | 33 | 166 | 5 | 146 | 1.01e-23 | 92.0 |
MS.gene59329.t1 | MTR_2g078010 | 38.333 | 120 | 66 | 2 | 54 | 172 | 30 | 142 | 1.35e-21 | 86.3 |
MS.gene59329.t1 | MTR_2g078010 | 40.000 | 105 | 62 | 1 | 54 | 157 | 30 | 134 | 2.53e-21 | 85.5 |
MS.gene59329.t1 | MTR_4g108080 | 27.778 | 144 | 103 | 1 | 33 | 175 | 8 | 151 | 6.68e-21 | 84.3 |
MS.gene59329.t1 | MTR_8g468530 | 24.837 | 153 | 114 | 1 | 24 | 175 | 15 | 167 | 3.87e-20 | 82.8 |
MS.gene59329.t1 | MTR_4g108080 | 30.275 | 109 | 76 | 0 | 67 | 175 | 43 | 151 | 2.11e-19 | 80.5 |
MS.gene59329.t1 | MTR_7g116940 | 39.000 | 100 | 58 | 2 | 33 | 130 | 5 | 103 | 5.82e-19 | 79.0 |
MS.gene59329.t1 | MTR_2g078010 | 37.500 | 104 | 59 | 1 | 54 | 157 | 51 | 148 | 3.70e-18 | 77.8 |
MS.gene59329.t1 | MTR_4g076200 | 32.090 | 134 | 87 | 2 | 33 | 162 | 36 | 169 | 5.86e-18 | 77.4 |
MS.gene59329.t1 | MTR_4g076200 | 38.144 | 97 | 57 | 1 | 69 | 162 | 32 | 128 | 6.60e-18 | 76.3 |
MS.gene59329.t1 | MTR_5g009020 | 38.824 | 85 | 52 | 0 | 69 | 153 | 73 | 157 | 8.48e-18 | 77.0 |
MS.gene59329.t1 | MTR_3g110110 | 30.075 | 133 | 89 | 3 | 29 | 157 | 3 | 135 | 1.43e-17 | 75.9 |
MS.gene59329.t1 | MTR_1g095510 | 33.962 | 106 | 70 | 0 | 51 | 156 | 65 | 170 | 3.82e-17 | 75.5 |
MS.gene59329.t1 | MTR_1g095510 | 33.962 | 106 | 70 | 0 | 51 | 156 | 11 | 116 | 4.15e-17 | 74.3 |
MS.gene59329.t1 | MTR_4g106690 | 33.043 | 115 | 74 | 3 | 56 | 167 | 27 | 141 | 8.46e-17 | 74.7 |
MS.gene59329.t1 | MTR_4g073240 | 41.892 | 74 | 43 | 0 | 93 | 166 | 4 | 77 | 2.04e-16 | 70.9 |
MS.gene59329.t1 | MTR_2g078010 | 43.590 | 78 | 43 | 1 | 54 | 130 | 30 | 107 | 9.55e-16 | 70.1 |
MS.gene59329.t1 | MTR_4g063490 | 30.833 | 120 | 70 | 1 | 63 | 169 | 40 | 159 | 1.45e-15 | 70.9 |
MS.gene59329.t1 | MTR_8g028920 | 33.000 | 100 | 65 | 2 | 70 | 167 | 3 | 102 | 1.19e-14 | 68.2 |
MS.gene59329.t1 | MTR_8g028920 | 34.615 | 104 | 64 | 4 | 67 | 167 | 39 | 141 | 1.24e-14 | 68.9 |
MS.gene59329.t1 | MTR_3g098780 | 32.743 | 113 | 74 | 2 | 56 | 166 | 30 | 142 | 2.93e-14 | 68.2 |
MS.gene59329.t1 | MTR_3g098780 | 32.743 | 113 | 74 | 2 | 56 | 166 | 54 | 166 | 3.47e-14 | 68.2 |
MS.gene59329.t1 | MTR_8g098595 | 31.068 | 103 | 69 | 2 | 67 | 167 | 24 | 126 | 5.09e-14 | 66.6 |
MS.gene59329.t1 | MTR_2g096690 | 30.000 | 120 | 71 | 1 | 63 | 169 | 40 | 159 | 5.60e-14 | 66.6 |
MS.gene59329.t1 | MTR_4g108080 | 28.972 | 107 | 75 | 1 | 33 | 138 | 8 | 114 | 8.63e-14 | 65.1 |
MS.gene59329.t1 | MTR_4g094872 | 29.915 | 117 | 79 | 2 | 53 | 166 | 33 | 149 | 2.51e-13 | 64.7 |
MS.gene59329.t1 | MTR_8g085690 | 30.709 | 127 | 82 | 3 | 23 | 147 | 16 | 138 | 4.87e-13 | 64.3 |
MS.gene59329.t1 | MTR_2g096690 | 30.000 | 120 | 70 | 2 | 63 | 169 | 40 | 158 | 1.29e-12 | 63.2 |
MS.gene59329.t1 | MTR_7g087590 | 33.684 | 95 | 63 | 0 | 72 | 166 | 54 | 148 | 1.48e-12 | 64.3 |
MS.gene59329.t1 | MTR_5g016630 | 28.571 | 119 | 82 | 2 | 52 | 167 | 32 | 150 | 1.62e-12 | 62.8 |
MS.gene59329.t1 | MTR_1g095510 | 27.523 | 109 | 77 | 1 | 33 | 139 | 45 | 153 | 9.29e-11 | 58.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59329.t1 | AT4G36800 | 85.870 | 184 | 25 | 1 | 1 | 183 | 1 | 184 | 1.83e-120 | 338 |
MS.gene59329.t1 | AT4G36800 | 85.870 | 184 | 25 | 1 | 1 | 183 | 1 | 184 | 1.83e-120 | 338 |
MS.gene59329.t1 | AT2G18600 | 83.243 | 185 | 29 | 1 | 1 | 183 | 1 | 185 | 1.60e-113 | 320 |
MS.gene59329.t1 | AT2G18600 | 83.243 | 185 | 29 | 1 | 1 | 183 | 1 | 185 | 1.60e-113 | 320 |
MS.gene59329.t1 | AT5G56150 | 36.029 | 136 | 84 | 2 | 33 | 166 | 5 | 139 | 1.08e-26 | 99.4 |
MS.gene59329.t1 | AT3G08690 | 37.500 | 136 | 82 | 2 | 33 | 166 | 5 | 139 | 3.04e-26 | 98.2 |
MS.gene59329.t1 | AT3G08690 | 37.500 | 136 | 82 | 2 | 33 | 166 | 5 | 139 | 3.04e-26 | 98.2 |
MS.gene59329.t1 | AT4G27960 | 36.765 | 136 | 83 | 2 | 33 | 166 | 5 | 139 | 3.25e-26 | 98.2 |
MS.gene59329.t1 | AT2G16740 | 36.765 | 136 | 83 | 2 | 33 | 166 | 5 | 139 | 3.39e-26 | 98.2 |
MS.gene59329.t1 | AT5G41700 | 35.294 | 136 | 86 | 1 | 33 | 166 | 5 | 140 | 3.80e-26 | 97.8 |
MS.gene59329.t1 | AT1G64230 | 36.029 | 136 | 84 | 2 | 33 | 166 | 5 | 139 | 5.44e-26 | 97.4 |
MS.gene59329.t1 | AT1G64230 | 36.029 | 136 | 84 | 2 | 33 | 166 | 5 | 139 | 5.44e-26 | 97.4 |
MS.gene59329.t1 | AT5G53300 | 36.029 | 136 | 84 | 2 | 33 | 166 | 5 | 139 | 9.63e-26 | 97.1 |
MS.gene59329.t1 | AT5G53300 | 36.029 | 136 | 84 | 2 | 33 | 166 | 5 | 139 | 9.63e-26 | 97.1 |
MS.gene59329.t1 | AT5G53300 | 36.029 | 136 | 84 | 2 | 33 | 166 | 5 | 139 | 9.63e-26 | 97.1 |
MS.gene59329.t1 | AT4G27960 | 36.765 | 136 | 83 | 2 | 33 | 166 | 35 | 169 | 1.78e-25 | 97.1 |
MS.gene59329.t1 | AT1G64230 | 34.028 | 144 | 85 | 2 | 33 | 166 | 5 | 148 | 2.82e-25 | 95.9 |
MS.gene59329.t1 | AT5G41700 | 35.294 | 136 | 85 | 2 | 33 | 166 | 5 | 139 | 6.26e-25 | 94.7 |
MS.gene59329.t1 | AT5G41700 | 35.294 | 136 | 85 | 2 | 33 | 166 | 5 | 139 | 6.26e-25 | 94.7 |
MS.gene59329.t1 | AT5G41700 | 35.294 | 136 | 85 | 2 | 33 | 166 | 5 | 139 | 6.26e-25 | 94.7 |
MS.gene59329.t1 | AT3G08700 | 34.783 | 138 | 86 | 3 | 33 | 167 | 5 | 141 | 1.16e-24 | 94.0 |
MS.gene59329.t1 | AT3G08700 | 34.783 | 138 | 86 | 3 | 33 | 167 | 5 | 141 | 1.16e-24 | 94.0 |
MS.gene59329.t1 | AT1G64230 | 38.393 | 112 | 68 | 1 | 56 | 166 | 70 | 181 | 2.64e-24 | 94.4 |
MS.gene59329.t1 | AT1G64230 | 38.393 | 112 | 68 | 1 | 56 | 166 | 70 | 181 | 2.64e-24 | 94.4 |
MS.gene59329.t1 | AT5G56150 | 39.815 | 108 | 61 | 3 | 33 | 138 | 5 | 110 | 1.30e-21 | 85.1 |
MS.gene59329.t1 | AT1G78870 | 40.000 | 105 | 62 | 1 | 54 | 157 | 30 | 134 | 2.12e-21 | 85.9 |
MS.gene59329.t1 | AT1G16890 | 39.048 | 105 | 63 | 1 | 54 | 157 | 30 | 134 | 7.24e-21 | 84.3 |
MS.gene59329.t1 | AT1G16890 | 39.048 | 105 | 63 | 1 | 54 | 157 | 39 | 143 | 1.16e-20 | 84.3 |
MS.gene59329.t1 | AT1G16890 | 41.837 | 98 | 56 | 1 | 61 | 157 | 4 | 101 | 1.46e-20 | 82.8 |
MS.gene59329.t1 | AT1G78870 | 41.837 | 98 | 56 | 1 | 61 | 157 | 4 | 101 | 1.61e-20 | 82.8 |
MS.gene59329.t1 | AT2G02760 | 27.083 | 144 | 104 | 1 | 33 | 175 | 8 | 151 | 1.68e-20 | 83.6 |
MS.gene59329.t1 | AT2G02760 | 27.083 | 144 | 104 | 1 | 33 | 175 | 8 | 151 | 1.68e-20 | 83.6 |
MS.gene59329.t1 | AT2G02760 | 27.083 | 144 | 104 | 1 | 33 | 175 | 8 | 151 | 1.68e-20 | 83.6 |
MS.gene59329.t1 | AT2G02760 | 27.083 | 144 | 104 | 1 | 33 | 175 | 8 | 151 | 1.68e-20 | 83.6 |
MS.gene59329.t1 | AT1G14400 | 27.083 | 144 | 104 | 1 | 33 | 175 | 8 | 151 | 6.30e-20 | 82.0 |
MS.gene59329.t1 | AT1G14400 | 27.083 | 144 | 104 | 1 | 33 | 175 | 8 | 151 | 6.30e-20 | 82.0 |
MS.gene59329.t1 | AT5G53300 | 37.500 | 104 | 62 | 2 | 33 | 134 | 5 | 107 | 6.08e-19 | 78.2 |
MS.gene59329.t1 | AT1G78870 | 41.414 | 99 | 56 | 2 | 61 | 157 | 4 | 102 | 9.14e-19 | 78.2 |
MS.gene59329.t1 | AT5G62540 | 27.273 | 143 | 103 | 1 | 33 | 174 | 8 | 150 | 1.63e-18 | 78.2 |
MS.gene59329.t1 | AT3G20060 | 37.500 | 88 | 55 | 0 | 69 | 156 | 32 | 119 | 6.05e-18 | 76.3 |
MS.gene59329.t1 | AT3G20060 | 37.500 | 88 | 55 | 0 | 69 | 156 | 77 | 164 | 9.56e-18 | 77.0 |
MS.gene59329.t1 | AT3G13550 | 32.061 | 131 | 86 | 2 | 17 | 145 | 24 | 153 | 9.97e-18 | 77.0 |
MS.gene59329.t1 | AT3G13550 | 32.540 | 126 | 82 | 2 | 17 | 140 | 24 | 148 | 1.17e-17 | 76.6 |
MS.gene59329.t1 | AT5G41700 | 38.384 | 99 | 58 | 2 | 33 | 129 | 5 | 102 | 1.47e-17 | 75.5 |
MS.gene59329.t1 | AT5G25760 | 30.827 | 133 | 88 | 3 | 29 | 157 | 3 | 135 | 1.62e-17 | 75.9 |
MS.gene59329.t1 | AT5G25760 | 30.827 | 133 | 88 | 3 | 29 | 157 | 3 | 135 | 1.62e-17 | 75.9 |
MS.gene59329.t1 | AT1G36340 | 34.821 | 112 | 72 | 1 | 56 | 166 | 34 | 145 | 2.19e-17 | 75.5 |
MS.gene59329.t1 | AT1G36340 | 34.821 | 112 | 72 | 1 | 56 | 166 | 34 | 145 | 2.19e-17 | 75.5 |
MS.gene59329.t1 | AT5G41340 | 38.462 | 104 | 60 | 4 | 67 | 167 | 39 | 141 | 1.07e-16 | 74.3 |
MS.gene59329.t1 | AT1G50490 | 36.364 | 88 | 56 | 0 | 69 | 156 | 76 | 163 | 1.09e-16 | 74.3 |
MS.gene59329.t1 | AT1G63800 | 37.500 | 104 | 61 | 4 | 67 | 167 | 39 | 141 | 1.75e-16 | 73.9 |
MS.gene59329.t1 | AT1G63800 | 37.500 | 104 | 61 | 4 | 67 | 167 | 24 | 126 | 2.33e-16 | 73.2 |
MS.gene59329.t1 | AT5G41340 | 36.000 | 100 | 62 | 2 | 70 | 167 | 7 | 106 | 5.15e-16 | 71.6 |
MS.gene59329.t1 | AT1G78870 | 43.590 | 78 | 43 | 1 | 54 | 130 | 30 | 107 | 5.53e-16 | 70.5 |
MS.gene59329.t1 | AT3G24515 | 33.607 | 122 | 73 | 2 | 53 | 166 | 36 | 157 | 9.77e-16 | 74.3 |
MS.gene59329.t1 | AT5G50870 | 35.417 | 96 | 61 | 1 | 72 | 166 | 47 | 142 | 1.10e-15 | 72.0 |
MS.gene59329.t1 | AT2G46030 | 34.783 | 115 | 72 | 3 | 56 | 167 | 27 | 141 | 3.16e-15 | 70.5 |
MS.gene59329.t1 | AT2G46030 | 34.783 | 115 | 72 | 3 | 56 | 167 | 27 | 141 | 3.16e-15 | 70.5 |
MS.gene59329.t1 | AT3G24515 | 35.577 | 104 | 63 | 1 | 67 | 166 | 79 | 182 | 4.71e-15 | 72.4 |
MS.gene59329.t1 | AT2G46030 | 34.783 | 115 | 72 | 3 | 56 | 167 | 30 | 144 | 5.87e-15 | 69.7 |
MS.gene59329.t1 | AT2G46030 | 34.783 | 115 | 72 | 3 | 56 | 167 | 30 | 144 | 5.87e-15 | 69.7 |
MS.gene59329.t1 | AT2G46030 | 35.088 | 114 | 71 | 3 | 56 | 166 | 99 | 212 | 7.17e-15 | 70.9 |
MS.gene59329.t1 | AT5G50870 | 38.667 | 75 | 45 | 1 | 72 | 145 | 47 | 121 | 4.93e-14 | 67.8 |
MS.gene59329.t1 | AT3G57870 | 30.769 | 117 | 78 | 2 | 53 | 166 | 34 | 150 | 8.60e-14 | 66.2 |
MS.gene59329.t1 | AT5G59300 | 29.167 | 120 | 72 | 1 | 63 | 169 | 40 | 159 | 4.81e-13 | 64.3 |
MS.gene59329.t1 | AT3G55380 | 29.412 | 119 | 71 | 1 | 64 | 169 | 42 | 160 | 4.95e-13 | 64.3 |
MS.gene59329.t1 | AT3G46460 | 28.333 | 120 | 73 | 1 | 63 | 169 | 40 | 159 | 5.74e-13 | 63.9 |
MS.gene59329.t1 | AT5G05080 | 33.684 | 95 | 63 | 0 | 72 | 166 | 54 | 148 | 8.73e-13 | 65.1 |
MS.gene59329.t1 | AT5G05080 | 33.684 | 95 | 63 | 0 | 72 | 166 | 54 | 148 | 8.73e-13 | 65.1 |
MS.gene59329.t1 | AT5G05080 | 33.684 | 95 | 63 | 0 | 72 | 166 | 54 | 148 | 8.73e-13 | 65.1 |
MS.gene59329.t1 | AT5G05080 | 33.684 | 95 | 63 | 0 | 72 | 166 | 54 | 148 | 8.73e-13 | 65.1 |
MS.gene59329.t1 | AT3G46460 | 27.523 | 109 | 66 | 1 | 74 | 169 | 9 | 117 | 8.17e-11 | 57.4 |
MS.gene59329.t1 | AT3G46460 | 27.523 | 109 | 66 | 1 | 74 | 169 | 9 | 117 | 8.17e-11 | 57.4 |
Find 50 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCCTTCCAAGTCAATATT+TGG | 0.142980 | 5.4:-11807868 | None:intergenic |
TTCAGGGGATCCTCGTAATT+TGG | 0.241596 | 5.4:-11808072 | None:intergenic |
CAGCAGCGGCATCATGATTC+AGG | 0.258270 | 5.4:-11808089 | None:intergenic |
CCAGCACTTTGCTTCTTAAC+AGG | 0.282485 | 5.4:-11805617 | None:intergenic |
AGATGACAGTGTTTATATTA+AGG | 0.283684 | 5.4:-11807930 | None:intergenic |
CTTAACAGGTACTCCATTAC+TGG | 0.300967 | 5.4:-11805603 | None:intergenic |
ACGTTAGATTCAAACATCTT+TGG | 0.304621 | 5.4:-11808126 | None:intergenic |
AATATAAACACTGTCATCTA+TGG | 0.349971 | 5.4:+11807934 | MS.gene59329:CDS |
TTTGTCTTGCACTTCACCTT+GGG | 0.370105 | 5.4:-11807720 | None:intergenic |
GGGTGCTTCATGTGGATAGA+TGG | 0.399776 | 5.4:-11807700 | None:intergenic |
GGCAATGTCTGGTGGGTATG+TGG | 0.402485 | 5.4:+11808155 | MS.gene59329:CDS |
CTTTGTCTTGCACTTCACCT+TGG | 0.407733 | 5.4:-11807721 | None:intergenic |
CATCAGGTCATCTTTGCCAT+TGG | 0.416464 | 5.4:-11807356 | None:intergenic |
ATCAGGTCATCTTTGCCATT+GGG | 0.429309 | 5.4:-11807355 | None:intergenic |
TCAAAACTTCGAAGTTCATC+AGG | 0.454455 | 5.4:-11807372 | None:intergenic |
AATTGCATGGTGCAAGACTT+TGG | 0.456157 | 5.4:-11807331 | None:intergenic |
TACAAGTAATATCCATCATC+GGG | 0.483744 | 5.4:-11807400 | None:intergenic |
GAGCATGGTTTACATACAGC+GGG | 0.483927 | 5.4:-11808193 | None:intergenic |
GATTAAACTATTTAAAGTAA+AGG | 0.497569 | 5.4:+11805553 | MS.gene59329:CDS |
TTCACCTTGGGTGCTTCATG+TGG | 0.501905 | 5.4:-11807708 | None:intergenic |
CATCCAAATATTGACTTGGA+AGG | 0.507990 | 5.4:+11807865 | MS.gene59329:CDS |
GCAATGTCTGGTGGGTATGT+GGG | 0.513890 | 5.4:+11808156 | MS.gene59329:CDS |
ACAGTGTTTATATTAAGGAC+AGG | 0.514717 | 5.4:-11807925 | None:intergenic |
AACGTGAGGAGGGCAATGTC+TGG | 0.519089 | 5.4:+11808144 | MS.gene59329:CDS |
TCAACATCTTAAGAGAAGAC+TGG | 0.523814 | 5.4:+11807899 | MS.gene59329:CDS |
TTACAAGTAATATCCATCAT+CGG | 0.536160 | 5.4:-11807401 | None:intergenic |
TGGCTTGTATCATCTCTTCA+CGG | 0.539377 | 5.4:+11807954 | MS.gene59329:CDS |
AGCAGCGGCATCATGATTCA+GGG | 0.539634 | 5.4:-11808088 | None:intergenic |
CTACCATCCAAATATTGACT+TGG | 0.541780 | 5.4:+11807861 | MS.gene59329:CDS |
ATAGATGGGAGACACATTGA+AGG | 0.544925 | 5.4:-11807685 | None:intergenic |
CTTCCAAGTCAATATTTGGA+TGG | 0.548559 | 5.4:-11807864 | None:intergenic |
CAAGCTGAAAATGCCAGTAA+TGG | 0.548896 | 5.4:+11805590 | MS.gene59329:CDS |
GTGAGGAGGGCAATGTCTGG+TGG | 0.572486 | 5.4:+11808147 | MS.gene59329:CDS |
TTTGCCATTGGGAAATTGCA+TGG | 0.574210 | 5.4:-11807344 | None:intergenic |
CCTGTTAAGAAGCAAAGTGC+TGG | 0.575364 | 5.4:+11805617 | MS.gene59329:CDS |
GGTGCTTCATGTGGATAGAT+GGG | 0.590678 | 5.4:-11807699 | None:intergenic |
GTTTGAATCTAACGTGAGGA+GGG | 0.600082 | 5.4:+11808134 | MS.gene59329:CDS |
TGCACCATGCAATTTCCCAA+TGG | 0.605830 | 5.4:+11807340 | MS.gene59329:CDS |
TGTTTGAATCTAACGTGAGG+AGG | 0.616720 | 5.4:+11808133 | MS.gene59329:CDS |
CTATCCACATGAAGCACCCA+AGG | 0.621344 | 5.4:+11807704 | MS.gene59329:CDS |
TGAGGAGGGCAATGTCTGGT+GGG | 0.628174 | 5.4:+11808148 | MS.gene59329:CDS |
GGCGAGTTGCGTCTTCACAA+AGG | 0.628980 | 5.4:+11805638 | MS.gene59329:CDS |
CAAGGTGAAGTGCAAGACAA+AGG | 0.630470 | 5.4:+11807722 | MS.gene59329:CDS |
GCAGCGGCATCATGATTCAG+GGG | 0.671229 | 5.4:-11808087 | None:intergenic |
TGAGCATGGTTTACATACAG+CGG | 0.671953 | 5.4:-11808194 | None:intergenic |
AGATGTTTGAATCTAACGTG+AGG | 0.675157 | 5.4:+11808130 | MS.gene59329:CDS |
GCATGGTTTACATACAGCGG+GGG | 0.678401 | 5.4:-11808191 | None:intergenic |
TGTGCAGGAGCCAAATTACG+AGG | 0.709133 | 5.4:+11808062 | MS.gene59329:intron |
ATTATCTCTCAAGACAGCAG+CGG | 0.713092 | 5.4:-11808103 | None:intergenic |
AGCATGGTTTACATACAGCG+GGG | 0.717629 | 5.4:-11808192 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAGAAAGAAATATATAAAT+AGG | - | chr5.4:11806248-11806267 | None:intergenic | 10.0% |
!! | AAGAAAGAAATATATAAATA+GGG | - | chr5.4:11806247-11806266 | None:intergenic | 10.0% |
!!! | ATGTTGTTTTATTATTTTTT+CGG | + | chr5.4:11806574-11806593 | MS.gene59329:intron | 10.0% |
!! | AAAATAACAAAAAGATAAAG+TGG | - | chr5.4:11807435-11807454 | None:intergenic | 15.0% |
!! | AAGTAAACAATTTAATAAGA+AGG | - | chr5.4:11805667-11805686 | None:intergenic | 15.0% |
!! | AATAAATTACACAAATATCT+TGG | + | chr5.4:11805883-11805902 | MS.gene59329:intron | 15.0% |
!! | AATCACTAATAAAATTACTA+AGG | - | chr5.4:11807041-11807060 | None:intergenic | 15.0% |
!! | ATATTTGTGTAATTTATTTC+TGG | - | chr5.4:11805881-11805900 | None:intergenic | 15.0% |
!!! | AAAATTGATTCTTGTTTTTA+AGG | + | chr5.4:11807474-11807493 | MS.gene59329:intron | 15.0% |
!!! | GATTAAACTATTTAAAGTAA+AGG | + | chr5.4:11805553-11805572 | MS.gene59329:CDS | 15.0% |
!!! | TTTATATCATGTTATTTGTT+TGG | + | chr5.4:11807518-11807537 | MS.gene59329:intron | 15.0% |
!! | AACAGAAGAAAATCAAATAT+AGG | - | chr5.4:11806838-11806857 | None:intergenic | 20.0% |
!! | ACTTGTATAACAAAATAAAG+TGG | - | chr5.4:11807265-11807284 | None:intergenic | 20.0% |
!! | ATAATCTACATAATGTAGTT+AGG | + | chr5.4:11805996-11806015 | MS.gene59329:intron | 20.0% |
!! | ATATATAAATAGGGATGAAA+AGG | - | chr5.4:11806238-11806257 | None:intergenic | 20.0% |
!! | GCTAAATTAAATGTATAATC+TGG | + | chr5.4:11807560-11807579 | MS.gene59329:intron | 20.0% |
!! | TAAAACAGAATATGAAAACA+AGG | - | chr5.4:11807800-11807819 | None:intergenic | 20.0% |
!! | TTAAATATTGTGTATTCTCA+CGG | + | chr5.4:11806771-11806790 | MS.gene59329:intron | 20.0% |
!! | TTGCATAAAATGAGTAAAAT+TGG | + | chr5.4:11806537-11806556 | MS.gene59329:intron | 20.0% |
!!! | ATTAAGACTCTGAAAAATAA+AGG | - | chr5.4:11806195-11806214 | None:intergenic | 20.0% |
!!! | ATTTTATGCAATGTTATTAG+AGG | - | chr5.4:11806528-11806547 | None:intergenic | 20.0% |
!!! | CAAGAATCAATTTTAAAGTT+AGG | - | chr5.4:11807468-11807487 | None:intergenic | 20.0% |
!!! | TAGAAGTTTTTACTTGATAT+AGG | + | chr5.4:11805958-11805977 | MS.gene59329:intron | 20.0% |
!!! | TATTAGTGATTTTTCATGAA+AGG | + | chr5.4:11807050-11807069 | MS.gene59329:intron | 20.0% |
! | AAAGAAAAAGAACAATCACA+TGG | - | chr5.4:11806939-11806958 | None:intergenic | 25.0% |
! | AAAGCCTTCATTAAATATAC+TGG | - | chr5.4:11806983-11807002 | None:intergenic | 25.0% |
! | AAATGAGTAAAATTGGACAA+AGG | + | chr5.4:11806544-11806563 | MS.gene59329:intron | 25.0% |
! | AACTGTGGATATTTAATGAT+TGG | + | chr5.4:11806155-11806174 | MS.gene59329:intron | 25.0% |
! | AAGCCTTCATTAAATATACT+GGG | - | chr5.4:11806982-11807001 | None:intergenic | 25.0% |
! | AATATAAACACTGTCATCTA+TGG | + | chr5.4:11807934-11807953 | MS.gene59329:CDS | 25.0% |
! | AGATGACAGTGTTTATATTA+AGG | - | chr5.4:11807933-11807952 | None:intergenic | 25.0% |
! | CAAACCAAAACATATATCTT+CGG | - | chr5.4:11805925-11805944 | None:intergenic | 25.0% |
! | TCATTCAACAATAAACTATC+TGG | - | chr5.4:11806743-11806762 | None:intergenic | 25.0% |
! | TCTTGAATCAATTAACAATG+AGG | - | chr5.4:11806281-11806300 | None:intergenic | 25.0% |
! | TGTATAACAAAATAAAGTGG+CGG | - | chr5.4:11807262-11807281 | None:intergenic | 25.0% |
! | TTACAAGTAATATCCATCAT+CGG | - | chr5.4:11807404-11807423 | None:intergenic | 25.0% |
! | TTCATTGTGTTAAATTTGTG+TGG | + | chr5.4:11805696-11805715 | MS.gene59329:intron | 25.0% |
!! | GATTGTTCTTTTTCTTTCTT+GGG | + | chr5.4:11806942-11806961 | MS.gene59329:intron | 25.0% |
!! | TGATTGTTCTTTTTCTTTCT+TGG | + | chr5.4:11806941-11806960 | MS.gene59329:intron | 25.0% |
!!! | CTCTGTTTTTTAACATATCA+GGG | + | chr5.4:11807982-11808001 | MS.gene59329:intron | 25.0% |
!!! | TATTTGATTTTCTTCTGTTC+TGG | + | chr5.4:11806839-11806858 | MS.gene59329:intron | 25.0% |
AAAATAAAGGAGGAAGAGAA+TGG | - | chr5.4:11806182-11806201 | None:intergenic | 30.0% | |
AAATAAAGGAGGAAGAGAAT+GGG | - | chr5.4:11806181-11806200 | None:intergenic | 30.0% | |
ACAGTGTTTATATTAAGGAC+AGG | - | chr5.4:11807928-11807947 | None:intergenic | 30.0% | |
ACATGATATAAAGACAGCAT+AGG | - | chr5.4:11807510-11807529 | None:intergenic | 30.0% | |
ACGTTAGATTCAAACATCTT+TGG | - | chr5.4:11808129-11808148 | None:intergenic | 30.0% | |
ATTAGTCAGCTTAAACATGT+AGG | + | chr5.4:11807111-11807130 | MS.gene59329:intron | 30.0% | |
CATGATATAAAGACAGCATA+GGG | - | chr5.4:11807509-11807528 | None:intergenic | 30.0% | |
GGTTATCACTTAACAAGTAT+AGG | - | chr5.4:11806901-11806920 | None:intergenic | 30.0% | |
GTATCATTATGTGTATATGC+AGG | + | chr5.4:11807837-11807856 | MS.gene59329:intron | 30.0% | |
TAAAATCCACCATAAGAGTA+TGG | - | chr5.4:11806480-11806499 | None:intergenic | 30.0% | |
TACAAGTAATATCCATCATC+GGG | - | chr5.4:11807403-11807422 | None:intergenic | 30.0% | |
TACATGTTTAAGCTGACTAA+TGG | - | chr5.4:11807112-11807131 | None:intergenic | 30.0% | |
TCTCCCAGTATATTTAATGA+AGG | + | chr5.4:11806976-11806995 | MS.gene59329:intron | 30.0% | |
TGTAACAAAAAACAGCATAG+AGG | - | chr5.4:11807644-11807663 | None:intergenic | 30.0% | |
TTTCCGTGAAAATTTACTGT+AGG | + | chr5.4:11806691-11806710 | MS.gene59329:intron | 30.0% | |
TTTCCTTCCAAGTCAATATT+TGG | - | chr5.4:11807871-11807890 | None:intergenic | 30.0% | |
! | AAGACTCTGAAAAATAAAGG+AGG | - | chr5.4:11806192-11806211 | None:intergenic | 30.0% |
! | ACTACCGAAGATATATGTTT+TGG | + | chr5.4:11805918-11805937 | MS.gene59329:intron | 30.0% |
! | ACTTGTTAAGTGATAACCTT+GGG | + | chr5.4:11806903-11806922 | MS.gene59329:intron | 30.0% |
! | AGGCTTTTTATCTTGAGAAT+TGG | + | chr5.4:11806996-11807015 | MS.gene59329:intron | 30.0% |
! | ATGAAAGGAAACTTCTTTTG+TGG | + | chr5.4:11807065-11807084 | MS.gene59329:intron | 30.0% |
! | TACTTGTTAAGTGATAACCT+TGG | + | chr5.4:11806902-11806921 | MS.gene59329:intron | 30.0% |
!! | GATGATGGATATTACTTGTA+AGG | + | chr5.4:11807403-11807422 | MS.gene59329:intron | 30.0% |
!! | TCAGGGTTTTGATATTTGAA+CGG | + | chr5.4:11807999-11808018 | MS.gene59329:intron | 30.0% |
!!! | ATACTCTTATGGTGGATTTT+AGG | + | chr5.4:11806479-11806498 | MS.gene59329:intron | 30.0% |
!!! | CAATTTTAAAGTTAGGCTAC+AGG | - | chr5.4:11807461-11807480 | None:intergenic | 30.0% |
!!! | CTGTTTTTTCGTCATTTTGA+GGG | - | chr5.4:11807605-11807624 | None:intergenic | 30.0% |
!!! | GCTCTGTTTTTTAACATATC+AGG | + | chr5.4:11807981-11808000 | MS.gene59329:intron | 30.0% |
!!! | TATGCTGTTTTTTGTTACAG+AGG | + | chr5.4:11807645-11807664 | MS.gene59329:intron | 30.0% |
!!! | TCTGTTTTTTCGTCATTTTG+AGG | - | chr5.4:11807606-11807625 | None:intergenic | 30.0% |
AACAAAAAACAGCATAGAGG+TGG | - | chr5.4:11807641-11807660 | None:intergenic | 35.0% | |
AAGAATGATCTAGGTTAGCA+AGG | + | chr5.4:11806659-11806678 | MS.gene59329:intron | 35.0% | |
AATGGAAAACCTTGAGATTG+TGG | + | chr5.4:11806632-11806651 | MS.gene59329:intron | 35.0% | |
ACAAGGTAGAGATAAGTGAA+TGG | + | chr5.4:11806614-11806633 | MS.gene59329:intron | 35.0% | |
ACGGGGATACTTGAAATTTA+TGG | + | chr5.4:11808018-11808037 | MS.gene59329:intron | 35.0% | |
AGATGTTTGAATCTAACGTG+AGG | + | chr5.4:11808130-11808149 | MS.gene59329:CDS | 35.0% | |
CTTCCAAGTCAATATTTGGA+TGG | - | chr5.4:11807867-11807886 | None:intergenic | 35.0% | |
CTTGTTAAGTGATAACCTTG+GGG | + | chr5.4:11806904-11806923 | MS.gene59329:intron | 35.0% | |
GCAATGTTATTAGAGGATGA+TGG | - | chr5.4:11806521-11806540 | None:intergenic | 35.0% | |
TCAAAACTTCGAAGTTCATC+AGG | - | chr5.4:11807375-11807394 | None:intergenic | 35.0% | |
TCAACATCTTAAGAGAAGAC+TGG | + | chr5.4:11807899-11807918 | MS.gene59329:CDS | 35.0% | |
TGACTACAATTCATGCTTCT+GGG | + | chr5.4:11807768-11807787 | MS.gene59329:intron | 35.0% | |
TGTGGTAGTAAGAATGATCT+AGG | + | chr5.4:11806650-11806669 | MS.gene59329:intron | 35.0% | |
TTCTTACTACCACAATCTCA+AGG | - | chr5.4:11806644-11806663 | None:intergenic | 35.0% | |
TTGACTACAATTCATGCTTC+TGG | + | chr5.4:11807767-11807786 | MS.gene59329:intron | 35.0% | |
TTGTTAAGTGATAACCTTGG+GGG | + | chr5.4:11806905-11806924 | MS.gene59329:intron | 35.0% | |
! | ATCTGTTACTTATTGTGTGC+AGG | + | chr5.4:11808047-11808066 | MS.gene59329:intron | 35.0% |
! | ATGTTATTAGAGGATGATGG+TGG | - | chr5.4:11806518-11806537 | None:intergenic | 35.0% |
! | CTACCATCCAAATATTGACT+TGG | + | chr5.4:11807861-11807880 | MS.gene59329:CDS | 35.0% |
! | GAGCCTACAGTAAATTTTCA+CGG | - | chr5.4:11806697-11806716 | None:intergenic | 35.0% |
! | GCTGCTAACAATGATACTTT+TGG | + | chr5.4:11806301-11806320 | MS.gene59329:intron | 35.0% |
! | TGTTCTTTTTCTTTCTTGGG+CGG | + | chr5.4:11806945-11806964 | MS.gene59329:intron | 35.0% |
! | TTGATTTTCTTCTGTTCTGG+TGG | + | chr5.4:11806842-11806861 | MS.gene59329:intron | 35.0% |
!! | AGGGTTTTGATATTTGAACG+GGG | + | chr5.4:11808001-11808020 | MS.gene59329:intron | 35.0% |
!! | ATAAGAGCATTCACACTTCA+CGG | - | chr5.4:11806868-11806887 | None:intergenic | 35.0% |
!! | CAGGGTTTTGATATTTGAAC+GGG | + | chr5.4:11808000-11808019 | MS.gene59329:intron | 35.0% |
!! | CATCCAAATATTGACTTGGA+AGG | + | chr5.4:11807865-11807884 | MS.gene59329:CDS | 35.0% |
!!! | TGCCATAGCAGGAATTTTTT+GGG | + | chr5.4:11805798-11805817 | MS.gene59329:intron | 35.0% |
!!! | TTGCCATAGCAGGAATTTTT+TGG | + | chr5.4:11805797-11805816 | MS.gene59329:intron | 35.0% |
AATTGCATGGTGCAAGACTT+TGG | - | chr5.4:11807334-11807353 | None:intergenic | 40.0% | |
ACAATCATCTCCTGCAATTG+TGG | + | chr5.4:11806100-11806119 | MS.gene59329:intron | 40.0% | |
AGTGTGAATGCTCTTATGCT+TGG | + | chr5.4:11806871-11806890 | MS.gene59329:intron | 40.0% | |
ATACTTGAATCGAGAGGGAA+AGG | + | chr5.4:11805743-11805762 | MS.gene59329:intron | 40.0% | |
ATAGATGGGAGACACATTGA+AGG | - | chr5.4:11807688-11807707 | None:intergenic | 40.0% | |
ATCAGGTCATCTTTGCCATT+GGG | - | chr5.4:11807358-11807377 | None:intergenic | 40.0% | |
ATCCACAGTTTACTGAAGAC+TGG | - | chr5.4:11806145-11806164 | None:intergenic | 40.0% | |
ATGAGACGCAGAAAGAAACA+AGG | + | chr5.4:11806597-11806616 | MS.gene59329:intron | 40.0% | |
ATTATCTCTCAAGACAGCAG+CGG | - | chr5.4:11808106-11808125 | None:intergenic | 40.0% | |
CAAGCTGAAAATGCCAGTAA+TGG | + | chr5.4:11805590-11805609 | MS.gene59329:CDS | 40.0% | |
CCAGAATACTTGAATCGAGA+GGG | + | chr5.4:11805738-11805757 | MS.gene59329:intron | 40.0% | |
CTTAACAGGTACTCCATTAC+TGG | - | chr5.4:11805606-11805625 | None:intergenic | 40.0% | |
GAGGGAAAGGTGAACAATAA+AGG | + | chr5.4:11805756-11805775 | MS.gene59329:intron | 40.0% | |
GATTCAAGTATTCTGGCCAT+GGG | - | chr5.4:11805734-11805753 | None:intergenic | 40.0% | |
GTTTGAATCTAACGTGAGGA+GGG | + | chr5.4:11808134-11808153 | MS.gene59329:CDS | 40.0% | |
TAATGTGTAGTTGCCATAGC+AGG | + | chr5.4:11805787-11805806 | MS.gene59329:intron | 40.0% | |
TGAAGAGTTACAAGCTCACT+AGG | + | chr5.4:11807145-11807164 | MS.gene59329:intron | 40.0% | |
TGCAGCTTATAGTAGAAGCA+TGG | - | chr5.4:11806447-11806466 | None:intergenic | 40.0% | |
TGTATCATCTCTTCACGGTA+TGG | + | chr5.4:11807959-11807978 | MS.gene59329:intron | 40.0% | |
TGTCATCTGCCATACTCTTA+TGG | + | chr5.4:11806468-11806487 | MS.gene59329:intron | 40.0% | |
TGTTTGAATCTAACGTGAGG+AGG | + | chr5.4:11808133-11808152 | MS.gene59329:CDS | 40.0% | |
TTTCTGGATTTCATTCTCGC+TGG | - | chr5.4:11805865-11805884 | None:intergenic | 40.0% | |
TTTGCCATTGGGAAATTGCA+TGG | - | chr5.4:11807347-11807366 | None:intergenic | 40.0% | |
TTTGTCTTGCACTTCACCTT+GGG | - | chr5.4:11807723-11807742 | None:intergenic | 40.0% | |
! | AGCTTATAGTAGAAGCATGG+AGG | - | chr5.4:11806444-11806463 | None:intergenic | 40.0% |
! | TGGCTTGTATCATCTCTTCA+CGG | + | chr5.4:11807954-11807973 | MS.gene59329:CDS | 40.0% |
!! | AGAAGCATGGAGGTTTTCAT+AGG | - | chr5.4:11806434-11806453 | None:intergenic | 40.0% |
!!! | CCATAGCAGGAATTTTTTGG+GGG | + | chr5.4:11805800-11805819 | MS.gene59329:intron | 40.0% |
!!! | GCCATAGCAGGAATTTTTTG+GGG | + | chr5.4:11805799-11805818 | MS.gene59329:intron | 40.0% |
!!! | GCTGTTTTTTGTTACAGAGG+AGG | + | chr5.4:11807648-11807667 | MS.gene59329:intron | 40.0% |
AAGACAGCATAGGGACATCA+AGG | - | chr5.4:11807500-11807519 | None:intergenic | 45.0% | |
AAGTATTCTGGCCATGGGTA+GGG | - | chr5.4:11805729-11805748 | None:intergenic | 45.0% | |
AGAGAAGAGACCACAATTGC+AGG | - | chr5.4:11806113-11806132 | None:intergenic | 45.0% | |
CAAGGTGAAGTGCAAGACAA+AGG | + | chr5.4:11807722-11807741 | MS.gene59329:CDS | 45.0% | |
CATCAGGTCATCTTTGCCAT+TGG | - | chr5.4:11807359-11807378 | None:intergenic | 45.0% | |
CATCTGCCATACTCTTATGG+TGG | + | chr5.4:11806471-11806490 | MS.gene59329:intron | 45.0% | |
CCAGCACTTTGCTTCTTAAC+AGG | - | chr5.4:11805620-11805639 | None:intergenic | 45.0% | |
CCCCCAAAAAATTCCTGCTA+TGG | - | chr5.4:11805803-11805822 | None:intergenic | 45.0% | |
CCCTCTCGATTCAAGTATTC+TGG | - | chr5.4:11805741-11805760 | None:intergenic | 45.0% | |
CCTGTTAAGAAGCAAAGTGC+TGG | + | chr5.4:11805617-11805636 | MS.gene59329:CDS | 45.0% | |
CGATTCAAGTATTCTGGCCA+TGG | - | chr5.4:11805735-11805754 | None:intergenic | 45.0% | |
CTTTGTCTTGCACTTCACCT+TGG | - | chr5.4:11807724-11807743 | None:intergenic | 45.0% | |
GACCAGTCTTCAGTAAACTG+TGG | + | chr5.4:11806140-11806159 | MS.gene59329:intron | 45.0% | |
GCCAGAATACTTGAATCGAG+AGG | + | chr5.4:11805737-11805756 | MS.gene59329:intron | 45.0% | |
GGTGCTTCATGTGGATAGAT+GGG | - | chr5.4:11807702-11807721 | None:intergenic | 45.0% | |
GTGAAGTGCAAGACAAAGGT+AGG | + | chr5.4:11807726-11807745 | MS.gene59329:intron | 45.0% | |
GTGAGCTTGTAACTCTTCAC+AGG | - | chr5.4:11807144-11807163 | None:intergenic | 45.0% | |
TGCACCATGCAATTTCCCAA+TGG | + | chr5.4:11807340-11807359 | MS.gene59329:CDS | 45.0% | |
TTCAGGGGATCCTCGTAATT+TGG | - | chr5.4:11808075-11808094 | None:intergenic | 45.0% | |
!! | TAGAGGATGATGGTGGTACA+TGG | - | chr5.4:11806511-11806530 | None:intergenic | 45.0% |
!! | TCATTTTGAGGGTGACGTGT+AGG | - | chr5.4:11807594-11807613 | None:intergenic | 45.0% |
!! | TTTTGGGGGCTTCGTTGTTT+GGG | + | chr5.4:11805814-11805833 | MS.gene59329:intron | 45.0% |
!! | TTTTTGGGGGCTTCGTTGTT+TGG | + | chr5.4:11805813-11805832 | MS.gene59329:intron | 45.0% |
!!! | GTTTTGATTCGACCCGATGA+TGG | + | chr5.4:11807388-11807407 | MS.gene59329:CDS | 45.0% |
AGCAGCGGCATCATGATTCA+GGG | - | chr5.4:11808091-11808110 | None:intergenic | 50.0% | |
AGTATTCTGGCCATGGGTAG+GGG | - | chr5.4:11805728-11805747 | None:intergenic | 50.0% | |
CAAGTATTCTGGCCATGGGT+AGG | - | chr5.4:11805730-11805749 | None:intergenic | 50.0% | |
GGGTGCTTCATGTGGATAGA+TGG | - | chr5.4:11807703-11807722 | None:intergenic | 50.0% | |
TGTGCAGGAGCCAAATTACG+AGG | + | chr5.4:11808062-11808081 | MS.gene59329:intron | 50.0% | |
TTACATACAGCGGGGGAAGA+AGG | - | chr5.4:11808187-11808206 | None:intergenic | 50.0% | |
TTCACCTTGGGTGCTTCATG+TGG | - | chr5.4:11807711-11807730 | None:intergenic | 50.0% | |
! | ACATGGTTTTCTCACCCCCA+AGG | - | chr5.4:11806922-11806941 | None:intergenic | 50.0% |
! | CTATCCACATGAAGCACCCA+AGG | + | chr5.4:11807704-11807723 | MS.gene59329:CDS | 50.0% |
! | GCAATGTCTGGTGGGTATGT+GGG | + | chr5.4:11808156-11808175 | MS.gene59329:CDS | 50.0% |
AACGTGAGGAGGGCAATGTC+TGG | + | chr5.4:11808144-11808163 | MS.gene59329:CDS | 55.0% | |
CAGCAGCGGCATCATGATTC+AGG | - | chr5.4:11808092-11808111 | None:intergenic | 55.0% | |
CTGTAGGCTCTCCTGCTTTG+AGG | + | chr5.4:11806707-11806726 | MS.gene59329:intron | 55.0% | |
GCAGCGGCATCATGATTCAG+GGG | - | chr5.4:11808090-11808109 | None:intergenic | 55.0% | |
GGCGAGTTGCGTCTTCACAA+AGG | + | chr5.4:11805638-11805657 | MS.gene59329:CDS | 55.0% | |
TCCTCTCCAGTCACACTCCA+AGG | - | chr5.4:11805840-11805859 | None:intergenic | 55.0% | |
TGAGGAGGGCAATGTCTGGT+GGG | + | chr5.4:11808148-11808167 | MS.gene59329:CDS | 55.0% | |
TTTGGGCCTTGGAGTGTGAC+TGG | + | chr5.4:11805831-11805850 | MS.gene59329:intron | 55.0% | |
! | GGCAATGTCTGGTGGGTATG+TGG | + | chr5.4:11808155-11808174 | MS.gene59329:CDS | 55.0% |
!! | CTCCTGCTTTGAGGAGGACA+GGG | + | chr5.4:11806716-11806735 | MS.gene59329:intron | 55.0% |
!! | TAGGCTCTCCTGCTTTGAGG+AGG | + | chr5.4:11806710-11806729 | MS.gene59329:intron | 55.0% |
!! | TCTCCTGCTTTGAGGAGGAC+AGG | + | chr5.4:11806715-11806734 | MS.gene59329:intron | 55.0% |
GCCTTGGAGTGTGACTGGAG+AGG | + | chr5.4:11805836-11805855 | MS.gene59329:intron | 60.0% | |
GGGCTTCGTTGTTTGGGCCT+TGG | + | chr5.4:11805820-11805839 | MS.gene59329:intron | 60.0% | |
GTCCCTGTCCTCCTCAAAGC+AGG | - | chr5.4:11806721-11806740 | None:intergenic | 60.0% | |
GTGAGGAGGGCAATGTCTGG+TGG | + | chr5.4:11808147-11808166 | MS.gene59329:CDS | 60.0% | |
GTGGCACTTGCCCCTACCCA+TGG | + | chr5.4:11805715-11805734 | MS.gene59329:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 11805551 | 11808206 | 11805551 | ID=MS.gene59329 |
chr5.4 | mRNA | 11805551 | 11808206 | 11805551 | ID=MS.gene59329.t1;Parent=MS.gene59329 |
chr5.4 | exon | 11805551 | 11805659 | 11805551 | ID=MS.gene59329.t1.exon1;Parent=MS.gene59329.t1 |
chr5.4 | CDS | 11805551 | 11805659 | 11805551 | ID=cds.MS.gene59329.t1;Parent=MS.gene59329.t1 |
chr5.4 | exon | 11807311 | 11807419 | 11807311 | ID=MS.gene59329.t1.exon2;Parent=MS.gene59329.t1 |
chr5.4 | CDS | 11807311 | 11807419 | 11807311 | ID=cds.MS.gene59329.t1;Parent=MS.gene59329.t1 |
chr5.4 | exon | 11807665 | 11807743 | 11807665 | ID=MS.gene59329.t1.exon3;Parent=MS.gene59329.t1 |
chr5.4 | CDS | 11807665 | 11807743 | 11807665 | ID=cds.MS.gene59329.t1;Parent=MS.gene59329.t1 |
chr5.4 | exon | 11807859 | 11807975 | 11807859 | ID=MS.gene59329.t1.exon4;Parent=MS.gene59329.t1 |
chr5.4 | CDS | 11807859 | 11807975 | 11807859 | ID=cds.MS.gene59329.t1;Parent=MS.gene59329.t1 |
chr5.4 | exon | 11808069 | 11808206 | 11808069 | ID=MS.gene59329.t1.exon5;Parent=MS.gene59329.t1 |
chr5.4 | CDS | 11808069 | 11808206 | 11808069 | ID=cds.MS.gene59329.t1;Parent=MS.gene59329.t1 |
Gene Sequence |
Protein sequence |