Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59359.t1 | XP_003611986.1 | 99.5 | 627 | 2 | 1 | 1 | 627 | 1 | 626 | 0.00E+00 | 1267.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59359.t1 | O82663 | 88.8 | 634 | 64 | 2 | 1 | 627 | 1 | 634 | 0.0e+00 | 1160.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59359.t1 | G7KDJ3 | 99.5 | 627 | 2 | 1 | 1 | 627 | 1 | 626 | 0.0e+00 | 1267.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050359 | MS.gene59359 | 0.810598 | 1.06E-50 | -1.69E-46 |
| MS.gene056849 | MS.gene59359 | 0.826426 | 2.73E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59359 | MS.gene026963 | PPI |
| MS.gene59359 | MS.gene82919 | PPI |
| MS.gene44056 | MS.gene59359 | PPI |
| MS.gene59359 | MS.gene52620 | PPI |
| MS.gene59359 | MS.gene064542 | PPI |
| MS.gene035805 | MS.gene59359 | PPI |
| MS.gene005189 | MS.gene59359 | PPI |
| MS.gene59359 | MS.gene91547 | PPI |
| MS.gene59359 | MS.gene34192 | PPI |
| MS.gene59359 | MS.gene73119 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59359.t1 | MTR_5g020050 | 99.522 | 627 | 2 | 1 | 1 | 627 | 1 | 626 | 0.0 | 1299 |
| MS.gene59359.t1 | MTR_5g020050 | 99.495 | 594 | 2 | 1 | 1 | 594 | 1 | 593 | 0.0 | 1228 |
| MS.gene59359.t1 | MTR_5g020050 | 99.812 | 533 | 1 | 0 | 95 | 627 | 1 | 533 | 0.0 | 1117 |
| MS.gene59359.t1 | MTR_6g007070 | 33.449 | 577 | 312 | 18 | 43 | 589 | 85 | 619 | 2.59e-78 | 261 |
| MS.gene59359.t1 | MTR_6g007070 | 32.917 | 480 | 253 | 16 | 138 | 587 | 2 | 442 | 1.73e-58 | 204 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59359.t1 | AT5G66760 | 88.801 | 634 | 64 | 2 | 1 | 627 | 1 | 634 | 0.0 | 1157 |
| MS.gene59359.t1 | AT2G18450 | 86.321 | 636 | 74 | 3 | 1 | 627 | 1 | 632 | 0.0 | 1123 |
| MS.gene59359.t1 | AT5G14760 | 33.116 | 613 | 340 | 16 | 5 | 587 | 47 | 619 | 1.50e-80 | 267 |
Find 169 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAGCTGCTTCAACAATTT+TGG | 0.104747 | 5.4:+12192405 | MS.gene59359:CDS |
| GGTTCCATCCTCCATGTTTA+AGG | 0.207924 | 5.4:-12192371 | None:intergenic |
| CCATCCTCTGTTCGAGAAAA+AGG | 0.221341 | 5.4:-12191862 | None:intergenic |
| ATGCAGGTGGTTACCATTAA+AGG | 0.242612 | 5.4:+12194499 | MS.gene59359:intron |
| ACTACCAACCTTCTGTTATA+AGG | 0.253374 | 5.4:-12192763 | None:intergenic |
| GTTATTGAACTAGAGAATTA+TGG | 0.259298 | 5.4:+12191835 | MS.gene59359:CDS |
| ATGAGATCCGAGAGAGTTAT+TGG | 0.260994 | 5.4:-12189685 | None:intergenic |
| GTGCTTCCCTACACATATAT+TGG | 0.266901 | 5.4:-12191804 | None:intergenic |
| ATCTGGATCGTCTCCTTTAA+TGG | 0.276389 | 5.4:-12194512 | None:intergenic |
| GCTTTATTGCACACTCTCTA+TGG | 0.278962 | 5.4:+12192068 | MS.gene59359:CDS |
| AGTCTCTCCTTGAGCACATC+TGG | 0.288142 | 5.4:-12193631 | None:intergenic |
| TTTCACCCAACGGGTATATA+TGG | 0.289741 | 5.4:+12192731 | MS.gene59359:CDS |
| AATGCCATGGCTGCCCGTGC+TGG | 0.295116 | 5.4:+12192579 | MS.gene59359:CDS |
| ACTTGGTGCAAATTCACTTT+TGG | 0.296486 | 5.4:+12194600 | MS.gene59359:CDS |
| TCTAGTTCAATAACCGCTTT+TGG | 0.311115 | 5.4:-12191826 | None:intergenic |
| GCATGCGCTGCTGATCGAAC+TGG | 0.312280 | 5.4:+12192041 | MS.gene59359:CDS |
| AGAAGGTCCGATTGGATTAC+AGG | 0.320125 | 5.4:+12197626 | MS.gene59359:CDS |
| GTGCTCAAGGAGAGACTTCC+TGG | 0.346533 | 5.4:+12193637 | MS.gene59359:CDS |
| TACCTACACCACGTCCTTCC+CGG | 0.354952 | 5.4:-12193020 | None:intergenic |
| ACTATTCATTATAAGATCTA+AGG | 0.357085 | 5.4:-12192135 | None:intergenic |
| TTTATTCTGCACCAGGGTTA+TGG | 0.364339 | 5.4:+12192507 | MS.gene59359:intron |
| GTTCCTGGATTGATGGCTGC+TGG | 0.366625 | 5.4:+12194541 | MS.gene59359:CDS |
| TTGAAGACAGAAGTTTGATA+TGG | 0.374329 | 5.4:+12195076 | MS.gene59359:CDS |
| TAATGCACAGTTGGCAAAAC+AGG | 0.377034 | 5.4:-12193715 | None:intergenic |
| GTCTCTCCTTGAGCACATCT+GGG | 0.382428 | 5.4:-12193630 | None:intergenic |
| AGAATATATCAGCGTGCATT+TGG | 0.386840 | 5.4:+12191886 | MS.gene59359:CDS |
| TGCATTAGTTCCTGGATTGA+TGG | 0.400952 | 5.4:+12194534 | MS.gene59359:CDS |
| CTTCTAATGTTTCTTGTGTA+CGG | 0.411591 | 5.4:-12194907 | None:intergenic |
| CCAGAAAACGATTGCATGGC+TGG | 0.413440 | 5.4:+12194796 | MS.gene59359:CDS |
| GATCCAGATGCATTAGTTCC+TGG | 0.418490 | 5.4:+12194526 | MS.gene59359:CDS |
| AATCCAGGAACTAATGCATC+TGG | 0.422975 | 5.4:-12194529 | None:intergenic |
| CCAAAATTGTTGAAGCAGCT+TGG | 0.423552 | 5.4:-12192405 | None:intergenic |
| AAGTGGATGAAACACACTTT+GGG | 0.427082 | 5.4:+12195415 | MS.gene59359:CDS |
| TGGCCAGCATCCTTCTCTAA+AGG | 0.427404 | 5.4:-12194776 | None:intergenic |
| ATGGCTGCCCGTGCTGGGAT+CGG | 0.429577 | 5.4:+12192585 | MS.gene59359:CDS |
| ATGCCATGGCTGCCCGTGCT+GGG | 0.436921 | 5.4:+12192580 | MS.gene59359:CDS |
| TGTCTTCAACCTTGACATCA+TGG | 0.438871 | 5.4:-12195062 | None:intergenic |
| GCCGGATTAAGAGCTGCTAT+TGG | 0.439931 | 5.4:+12189899 | MS.gene59359:CDS |
| GGTGGTCAGAGCTTAAACTT+TGG | 0.442230 | 5.4:+12191907 | MS.gene59359:CDS |
| GATCGATGACTATGGAGATC+CGG | 0.443198 | 5.4:+12193001 | MS.gene59359:CDS |
| TTCCTGGATTGATGGCTGCT+GGG | 0.444126 | 5.4:+12194542 | MS.gene59359:CDS |
| CATGCGCTGCTGATCGAACT+GGG | 0.444697 | 5.4:+12192042 | MS.gene59359:CDS |
| TGTGTTAATTTGCAGATTCT+GGG | 0.444739 | 5.4:+12197597 | MS.gene59359:intron |
| TTCACACACTGTTGCAGCTC+AGG | 0.452239 | 5.4:+12189976 | MS.gene59359:CDS |
| CATTAATACACACGAGCCTT+AGG | 0.454281 | 5.4:-12197694 | None:intergenic |
| GCAGCCTGTGCATCAGTTCA+TGG | 0.461706 | 5.4:+12194568 | MS.gene59359:CDS |
| AAGCAGCTTGGAAACGATGC+AGG | 0.464061 | 5.4:-12192393 | None:intergenic |
| ACATATATTGGATGGCATCC+TGG | 0.467939 | 5.4:-12191792 | None:intergenic |
| TCCAATAGCAGCTCTTAATC+CGG | 0.468520 | 5.4:-12189900 | None:intergenic |
| CAGAGCTTAAACTTTGGAAA+AGG | 0.469151 | 5.4:+12191913 | MS.gene59359:CDS |
| CACAGTTGGCAAAACAGGAA+TGG | 0.470405 | 5.4:-12193710 | None:intergenic |
| AGTTTCAAGATCGATGACTA+TGG | 0.471006 | 5.4:+12192993 | MS.gene59359:CDS |
| GTGGTAGGTGCTGGTGGTGC+CGG | 0.475004 | 5.4:+12189881 | MS.gene59359:CDS |
| ATCGATGACTATGGAGATCC+GGG | 0.485790 | 5.4:+12193002 | MS.gene59359:CDS |
| GACAAATTGAGAAATTCAAA+TGG | 0.487335 | 5.4:+12194818 | MS.gene59359:CDS |
| TCATGCCCGTGAGGACTTCA+CGG | 0.503927 | 5.4:+12195294 | MS.gene59359:CDS |
| GTGGTGAAGGTGGAATTCTT+AGG | 0.505148 | 5.4:+12192902 | MS.gene59359:CDS |
| TCCCCAGCAGCCATCAATCC+AGG | 0.505507 | 5.4:-12194544 | None:intergenic |
| ACAGTTGGCAAAACAGGAAT+GGG | 0.508684 | 5.4:-12193709 | None:intergenic |
| TGTTTAAGGCAATCACTCCT+TGG | 0.510690 | 5.4:-12192357 | None:intergenic |
| CGATCTTGAAACTACATCTC+GGG | 0.511202 | 5.4:-12192983 | None:intergenic |
| GGGTGGCATAAATGCTGCAT+TGG | 0.511697 | 5.4:+12191345 | MS.gene59359:intron |
| ACCTCTCCATGATGATTTGT+GGG | 0.512051 | 5.4:-12193754 | None:intergenic |
| GAAGTGGATGAAACACACTT+TGG | 0.512688 | 5.4:+12195414 | MS.gene59359:CDS |
| AGATAGATGTGATCTTTCTC+AGG | 0.513190 | 5.4:-12193589 | None:intergenic |
| TTTGTGCAATTTCACCCAAC+GGG | 0.515778 | 5.4:+12192722 | MS.gene59359:CDS |
| CTTGATCGAGACTATTGAGT+TGG | 0.516926 | 5.4:+12195204 | MS.gene59359:CDS |
| ATTGCACACTCTCTATGGCC+AGG | 0.517919 | 5.4:+12192073 | MS.gene59359:CDS |
| ACCTCAGCACATACATGCAC+TGG | 0.519071 | 5.4:+12192549 | MS.gene59359:CDS |
| GGTGGCATAAATGCTGCATT+GGG | 0.519373 | 5.4:+12191346 | MS.gene59359:CDS |
| TACCTCTCCATGATGATTTG+TGG | 0.520950 | 5.4:-12193755 | None:intergenic |
| GTGTATTGTGTCTCATAGCC+TGG | 0.521506 | 5.4:-12192091 | None:intergenic |
| CTGCTCCATATATACCCGTT+GGG | 0.522127 | 5.4:-12192736 | None:intergenic |
| GAAACAAAAGCCTTTAGAGA+AGG | 0.529387 | 5.4:+12194766 | MS.gene59359:CDS |
| CCCATGTTATAATGCACAGT+TGG | 0.530509 | 5.4:-12193724 | None:intergenic |
| CTCAAGTCCGATCCCAGCAC+GGG | 0.532597 | 5.4:-12192592 | None:intergenic |
| CAATGCACTCTGCAGAAGCT+AGG | 0.534552 | 5.4:+12195254 | MS.gene59359:CDS |
| CCGTGCTGGGATCGGACTTG+AGG | 0.534940 | 5.4:+12192593 | MS.gene59359:CDS |
| TGCAGAGTGCATTGTGACGC+AGG | 0.536303 | 5.4:-12195245 | None:intergenic |
| ATGTGGCGTTGCGTCGCTCG+TGG | 0.539513 | 5.4:+12189630 | MS.gene59359:CDS |
| GATCCCAGCACGGGCAGCCA+TGG | 0.541289 | 5.4:-12192583 | None:intergenic |
| ATATATCAGCGTGCATTTGG+TGG | 0.542986 | 5.4:+12191889 | MS.gene59359:CDS |
| TCCTGGATTGATGGCTGCTG+GGG | 0.543390 | 5.4:+12194543 | MS.gene59359:CDS |
| AACTAACCGTGAAGTCCTCA+CGG | 0.544443 | 5.4:-12195300 | None:intergenic |
| GTTGCAGAAATTCATAAGCC+AGG | 0.544526 | 5.4:+12194658 | MS.gene59359:CDS |
| TCCAATGTATTCAAATGCAC+AGG | 0.545981 | 5.4:-12197649 | None:intergenic |
| GCTATTGGACTTTCTGAACA+TGG | 0.547624 | 5.4:+12189914 | MS.gene59359:CDS |
| TAATACACACGAGCCTTAGG+AGG | 0.547973 | 5.4:-12197691 | None:intergenic |
| GTTCATGGTGCCAACAGACT+TGG | 0.548733 | 5.4:+12194583 | MS.gene59359:CDS |
| TGCCATCCAATATATGTGTA+GGG | 0.549829 | 5.4:+12191798 | MS.gene59359:CDS |
| ATGCCATCCAATATATGTGT+AGG | 0.552173 | 5.4:+12191797 | MS.gene59359:CDS |
| GCACAGGCCTGTAATCCAAT+CGG | 0.553394 | 5.4:-12197633 | None:intergenic |
| TCGATCTTGAAACTACATCT+CGG | 0.553813 | 5.4:-12192984 | None:intergenic |
| ACACAAGAAACATTAGAAGA+AGG | 0.555710 | 5.4:+12194911 | MS.gene59359:CDS |
| GGTTGAATCATTCCCTCCTA+AGG | 0.556270 | 5.4:+12197678 | MS.gene59359:CDS |
| GTCAATTAATTGATAAAACG+TGG | 0.556470 | 5.4:+12195031 | MS.gene59359:CDS |
| GAAATATGACTGAAGATGAC+TGG | 0.557787 | 5.4:+12191368 | MS.gene59359:CDS |
| GCCTGTGCATTTGAATACAT+TGG | 0.557956 | 5.4:+12197648 | MS.gene59359:CDS |
| GATGCAGTTGTGGTAGGTGC+TGG | 0.560650 | 5.4:+12189872 | MS.gene59359:CDS |
| GGAGAACGAGAAGGTCCGAT+TGG | 0.562403 | 5.4:+12197618 | MS.gene59359:CDS |
| GATCAGCAGCGCATGCGCAA+CGG | 0.562643 | 5.4:-12192034 | None:intergenic |
| GGCATTCCCACAAATCATCA+TGG | 0.562992 | 5.4:+12193748 | MS.gene59359:CDS |
| AGATCCTCCAATAACTCTCT+CGG | 0.565822 | 5.4:+12189678 | MS.gene59359:CDS |
| TTAGGTTCTCGTGGTGAAGG+TGG | 0.566896 | 5.4:+12192892 | MS.gene59359:intron |
| AGACAAGAGATGATGAGAAG+TGG | 0.572116 | 5.4:+12195398 | MS.gene59359:intron |
| TGAATTTGCACCAAGTCTGT+TGG | 0.572143 | 5.4:-12194593 | None:intergenic |
| CCTGCTCCATATATACCCGT+TGG | 0.576795 | 5.4:-12192737 | None:intergenic |
| ATGGAGATCCGGGAAGGACG+TGG | 0.577137 | 5.4:+12193012 | MS.gene59359:CDS |
| CCAACGGGTATATATGGAGC+AGG | 0.577748 | 5.4:+12192737 | MS.gene59359:CDS |
| TTTGAATACATTGGATGATG+AGG | 0.579255 | 5.4:+12197657 | MS.gene59359:CDS |
| AAGCCTTTAGAGAAGGATGC+TGG | 0.580540 | 5.4:+12194773 | MS.gene59359:CDS |
| CAACAGTGTGTGAACGAGTT+GGG | 0.581861 | 5.4:-12189967 | None:intergenic |
| GCACATACATGCACTGGAGA+TGG | 0.583607 | 5.4:+12192555 | MS.gene59359:CDS |
| GTTTGTGCAATTTCACCCAA+CGG | 0.583893 | 5.4:+12192721 | MS.gene59359:CDS |
| GGCACCATGAACTGATGCAC+AGG | 0.585331 | 5.4:-12194572 | None:intergenic |
| GCAGGTTGCCTTATAACAGA+AGG | 0.587925 | 5.4:+12192755 | MS.gene59359:CDS |
| GCAGTTGTGGTAGGTGCTGG+TGG | 0.588394 | 5.4:+12189875 | MS.gene59359:CDS |
| GGAGAGTTTCCATGATGTCA+AGG | 0.594515 | 5.4:+12195053 | MS.gene59359:CDS |
| ACACTGTCAAAGGAAGTGAT+TGG | 0.595632 | 5.4:+12191407 | MS.gene59359:CDS |
| TTCCCTACACATATATTGGA+TGG | 0.601606 | 5.4:-12191800 | None:intergenic |
| CAGATTCTGGGAGAACGAGA+AGG | 0.601740 | 5.4:+12197609 | MS.gene59359:intron |
| GCCAACTGTGCATTATAACA+TGG | 0.602535 | 5.4:+12193723 | MS.gene59359:CDS |
| GATCTTATAATGAATAGTGA+TGG | 0.605150 | 5.4:+12192140 | MS.gene59359:CDS |
| TCTATAATCTACAGGAGACC+AGG | 0.605175 | 5.4:+12191774 | MS.gene59359:intron |
| AGGAGTGATTGCCTTAAACA+TGG | 0.608685 | 5.4:+12192360 | MS.gene59359:CDS |
| GATGCAAGATCCTTTGCTGT+AGG | 0.609186 | 5.4:-12192961 | None:intergenic |
| TCAATTAATTGATAAAACGT+GGG | 0.614071 | 5.4:+12195032 | MS.gene59359:CDS |
| TGCTGGTGTGGATGTTACAA+AGG | 0.614475 | 5.4:+12193684 | MS.gene59359:CDS |
| CACATGTACGACACTGTCAA+AGG | 0.616446 | 5.4:+12191397 | MS.gene59359:CDS |
| ATTGCCTTAAACATGGAGGA+TGG | 0.617847 | 5.4:+12192367 | MS.gene59359:CDS |
| GCAACAGTGTGTGAACGAGT+TGG | 0.618205 | 5.4:-12189968 | None:intergenic |
| ACGATATGCTCCTACAGCAA+AGG | 0.620667 | 5.4:+12192951 | MS.gene59359:CDS |
| ATCCGGGAAGGACGTGGTGT+AGG | 0.620698 | 5.4:+12193018 | MS.gene59359:CDS |
| GCAGCAGTTTCAGAGATACC+AGG | 0.622188 | 5.4:-12193655 | None:intergenic |
| TCTCTCCTTGAGCACATCTG+GGG | 0.622970 | 5.4:-12193629 | None:intergenic |
| CACTGGAGATGGCAATGCCA+TGG | 0.623010 | 5.4:+12192566 | MS.gene59359:CDS |
| AGATCCGAGAGAGTTATTGG+AGG | 0.624161 | 5.4:-12189682 | None:intergenic |
| AGCAGCTTGGAAACGATGCA+GGG | 0.624947 | 5.4:-12192392 | None:intergenic |
| CCTCAAGTCCGATCCCAGCA+CGG | 0.631679 | 5.4:-12192593 | None:intergenic |
| TCCAGTGCATGTATGTGCTG+AGG | 0.632447 | 5.4:-12192550 | None:intergenic |
| CTGGCCAGAAAACGATTGCA+TGG | 0.633199 | 5.4:+12194792 | MS.gene59359:CDS |
| AAATATGATGCAGTTGTGGT+AGG | 0.635444 | 5.4:+12189866 | MS.gene59359:CDS |
| ATGACTATGGAGATCCGGGA+AGG | 0.637410 | 5.4:+12193006 | MS.gene59359:CDS |
| GGAATTCTTAGGAATAGCGA+GGG | 0.637607 | 5.4:+12192913 | MS.gene59359:CDS |
| CTCTCCTTGAGCACATCTGG+GGG | 0.639375 | 5.4:-12193628 | None:intergenic |
| GTCAAAGGAAGTGATTGGCT+AGG | 0.646721 | 5.4:+12191412 | MS.gene59359:CDS |
| TAGAGGAGCTCATGCCCGTG+AGG | 0.651502 | 5.4:+12195285 | MS.gene59359:CDS |
| GGATGTGTAGGTAGTTGCCA+AGG | 0.653439 | 5.4:+12192340 | MS.gene59359:intron |
| AATACACACGAGCCTTAGGA+GGG | 0.653658 | 5.4:-12197690 | None:intergenic |
| TCATAAATATGATGCAGTTG+TGG | 0.657398 | 5.4:+12189862 | MS.gene59359:CDS |
| GAAGCTAGGAAAGAGAGTAG+AGG | 0.661823 | 5.4:+12195268 | MS.gene59359:CDS |
| TGGAATTCTTAGGAATAGCG+AGG | 0.663327 | 5.4:+12192912 | MS.gene59359:CDS |
| TCCCACAAATCATCATGGAG+AGG | 0.663523 | 5.4:+12193753 | MS.gene59359:CDS |
| ACTAACCGTGAAGTCCTCAC+GGG | 0.668557 | 5.4:-12195299 | None:intergenic |
| TGACTGAAGATGACTGGAGG+TGG | 0.670220 | 5.4:+12191374 | MS.gene59359:CDS |
| TGAACGAGTTGGGAAAAGCT+TGG | 0.674771 | 5.4:-12189957 | None:intergenic |
| CTCAATAGTCTCGATCAAGT+CGG | 0.674901 | 5.4:-12195200 | None:intergenic |
| CCAACTGTGCATTATAACAT+GGG | 0.676041 | 5.4:+12193724 | MS.gene59359:CDS |
| ACTGTGCATTATAACATGGG+TGG | 0.685484 | 5.4:+12193727 | MS.gene59359:CDS |
| GAGCGAGTCTTACACCGTCG+TGG | 0.686915 | 5.4:+12189838 | MS.gene59359:intron |
| GTGTAGGGAAGCACCAAAAG+CGG | 0.703329 | 5.4:+12191813 | MS.gene59359:CDS |
| GAGGATCTGTTAGAAGAACG+TGG | 0.703865 | 5.4:-12189663 | None:intergenic |
| ATCATATTTATGATCCACGA+CGG | 0.704232 | 5.4:-12189852 | None:intergenic |
| GAATTCTTAGGAATAGCGAG+GGG | 0.709202 | 5.4:+12192914 | MS.gene59359:CDS |
| AGTGATTGCCTTAAACATGG+AGG | 0.738491 | 5.4:+12192363 | MS.gene59359:CDS |
| AGTGGATGAAACACACTTTG+GGG | 0.750579 | 5.4:+12195416 | MS.gene59359:CDS |
| AATTCTTAGGAATAGCGAGG+GGG | 0.754649 | 5.4:+12192915 | MS.gene59359:CDS |
| ATATGACTGAAGATGACTGG+AGG | 0.760494 | 5.4:+12191371 | MS.gene59359:CDS |
| AGAAAATCAAGTTACCCCAG+TGG | 0.762989 | 5.4:-12192428 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 12189630 | 12197714 | 12189630 | ID=MS.gene59359 |
| chr5.4 | mRNA | 12189630 | 12197714 | 12189630 | ID=MS.gene59359.t1;Parent=MS.gene59359 |
| chr5.4 | exon | 12189630 | 12189725 | 12189630 | ID=MS.gene59359.t1.exon1;Parent=MS.gene59359.t1 |
| chr5.4 | CDS | 12189630 | 12189725 | 12189630 | ID=cds.MS.gene59359.t1;Parent=MS.gene59359.t1 |
| chr5.4 | exon | 12189839 | 12189997 | 12189839 | ID=MS.gene59359.t1.exon2;Parent=MS.gene59359.t1 |
| chr5.4 | CDS | 12189839 | 12189997 | 12189839 | ID=cds.MS.gene59359.t1;Parent=MS.gene59359.t1 |
| chr5.4 | exon | 12191346 | 12191433 | 12191346 | ID=MS.gene59359.t1.exon3;Parent=MS.gene59359.t1 |
| chr5.4 | CDS | 12191346 | 12191433 | 12191346 | ID=cds.MS.gene59359.t1;Parent=MS.gene59359.t1 |
| chr5.4 | exon | 12191788 | 12191934 | 12191788 | ID=MS.gene59359.t1.exon4;Parent=MS.gene59359.t1 |
| chr5.4 | CDS | 12191788 | 12191934 | 12191788 | ID=cds.MS.gene59359.t1;Parent=MS.gene59359.t1 |
| chr5.4 | exon | 12192021 | 12192161 | 12192021 | ID=MS.gene59359.t1.exon5;Parent=MS.gene59359.t1 |
| chr5.4 | CDS | 12192021 | 12192161 | 12192021 | ID=cds.MS.gene59359.t1;Parent=MS.gene59359.t1 |
| chr5.4 | exon | 12192350 | 12192435 | 12192350 | ID=MS.gene59359.t1.exon6;Parent=MS.gene59359.t1 |
| chr5.4 | CDS | 12192350 | 12192435 | 12192350 | ID=cds.MS.gene59359.t1;Parent=MS.gene59359.t1 |
| chr5.4 | exon | 12192522 | 12192614 | 12192522 | ID=MS.gene59359.t1.exon7;Parent=MS.gene59359.t1 |
| chr5.4 | CDS | 12192522 | 12192614 | 12192522 | ID=cds.MS.gene59359.t1;Parent=MS.gene59359.t1 |
| chr5.4 | exon | 12192713 | 12192776 | 12192713 | ID=MS.gene59359.t1.exon8;Parent=MS.gene59359.t1 |
| chr5.4 | CDS | 12192713 | 12192776 | 12192713 | ID=cds.MS.gene59359.t1;Parent=MS.gene59359.t1 |
| chr5.4 | exon | 12192896 | 12193039 | 12192896 | ID=MS.gene59359.t1.exon9;Parent=MS.gene59359.t1 |
| chr5.4 | CDS | 12192896 | 12193039 | 12192896 | ID=cds.MS.gene59359.t1;Parent=MS.gene59359.t1 |
| chr5.4 | exon | 12193587 | 12193774 | 12193587 | ID=MS.gene59359.t1.exon10;Parent=MS.gene59359.t1 |
| chr5.4 | CDS | 12193587 | 12193774 | 12193587 | ID=cds.MS.gene59359.t1;Parent=MS.gene59359.t1 |
| chr5.4 | exon | 12194505 | 12194679 | 12194505 | ID=MS.gene59359.t1.exon11;Parent=MS.gene59359.t1 |
| chr5.4 | CDS | 12194505 | 12194679 | 12194505 | ID=cds.MS.gene59359.t1;Parent=MS.gene59359.t1 |
| chr5.4 | exon | 12194762 | 12194932 | 12194762 | ID=MS.gene59359.t1.exon12;Parent=MS.gene59359.t1 |
| chr5.4 | CDS | 12194762 | 12194932 | 12194762 | ID=cds.MS.gene59359.t1;Parent=MS.gene59359.t1 |
| chr5.4 | exon | 12195028 | 12195097 | 12195028 | ID=MS.gene59359.t1.exon13;Parent=MS.gene59359.t1 |
| chr5.4 | CDS | 12195028 | 12195097 | 12195028 | ID=cds.MS.gene59359.t1;Parent=MS.gene59359.t1 |
| chr5.4 | exon | 12195195 | 12195315 | 12195195 | ID=MS.gene59359.t1.exon14;Parent=MS.gene59359.t1 |
| chr5.4 | CDS | 12195195 | 12195315 | 12195195 | ID=cds.MS.gene59359.t1;Parent=MS.gene59359.t1 |
| chr5.4 | exon | 12195400 | 12195437 | 12195400 | ID=MS.gene59359.t1.exon15;Parent=MS.gene59359.t1 |
| chr5.4 | CDS | 12195400 | 12195437 | 12195400 | ID=cds.MS.gene59359.t1;Parent=MS.gene59359.t1 |
| chr5.4 | exon | 12197612 | 12197714 | 12197612 | ID=MS.gene59359.t1.exon16;Parent=MS.gene59359.t1 |
| chr5.4 | CDS | 12197612 | 12197714 | 12197612 | ID=cds.MS.gene59359.t1;Parent=MS.gene59359.t1 |
| Gene Sequence |
| Protein sequence |
