Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59880.t1 | XP_013445262.1 | 78 | 436 | 71 | 1 | 1 | 436 | 1 | 411 | 3.40E-73 | 285.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59880.t1 | D9UC01 | 35.6 | 104 | 67 | 0 | 24 | 127 | 16 | 119 | 4.0e-14 | 80.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59880.t1 | A0A072TR16 | 78.0 | 436 | 71 | 1 | 1 | 436 | 1 | 411 | 2.4e-73 | 285.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049698 | MS.gene59880 | 0.804622 | 1.98E-49 | -1.69E-46 |
| MS.gene05017 | MS.gene59880 | 0.813272 | 2.78E-51 | -1.69E-46 |
| MS.gene058909 | MS.gene59880 | 0.841152 | 5.65E-58 | -1.69E-46 |
| MS.gene058912 | MS.gene59880 | 0.838765 | 2.37E-57 | -1.69E-46 |
| MS.gene05894 | MS.gene59880 | 0.801596 | 8.36E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59880.t1 | MTR_8g046245 | 86.758 | 438 | 29 | 3 | 1 | 436 | 1 | 411 | 0.0 | 715 |
| MS.gene59880.t1 | MTR_3g007660 | 33.895 | 475 | 202 | 20 | 1 | 436 | 1 | 402 | 4.16e-47 | 167 |
| MS.gene59880.t1 | MTR_5g087480 | 34.266 | 143 | 86 | 5 | 15 | 153 | 4 | 142 | 1.48e-13 | 71.6 |
| MS.gene59880.t1 | MTR_5g087450 | 35.417 | 96 | 61 | 1 | 22 | 117 | 12 | 106 | 4.53e-13 | 69.3 |
| MS.gene59880.t1 | MTR_3g007480 | 26.793 | 474 | 264 | 24 | 24 | 436 | 9 | 460 | 6.10e-13 | 70.9 |
| MS.gene59880.t1 | MTR_5g087480 | 29.064 | 203 | 132 | 6 | 15 | 208 | 4 | 203 | 6.88e-13 | 70.1 |
| MS.gene59880.t1 | MTR_5g087470 | 33.333 | 117 | 71 | 2 | 15 | 125 | 4 | 119 | 7.01e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59880.t1 | AT5G04890 | 37.113 | 97 | 61 | 0 | 24 | 120 | 16 | 112 | 4.63e-17 | 82.8 |
| MS.gene59880.t1 | AT2G27140 | 38.889 | 90 | 54 | 1 | 22 | 111 | 12 | 100 | 1.20e-16 | 79.3 |
| MS.gene59880.t1 | AT5G20970 | 36.458 | 96 | 60 | 1 | 16 | 111 | 2 | 96 | 1.62e-13 | 70.5 |
Find 63 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTCATGTTTATCTTCC+TGG | 0.169791 | 8.3:-53393019 | MS.gene59880:intron |
| GAGAGTTCCTTGTTCAAATT+TGG | 0.170610 | 8.3:+53392613 | None:intergenic |
| CATTTAGAGCACCAACTTTC+CGG | 0.225720 | 8.3:-53393117 | MS.gene59880:CDS |
| TCCATTCTTCCCTTCTTGAT+TGG | 0.243777 | 8.3:+53391773 | None:intergenic |
| CCATTCTTCCCTTCTTGATT+GGG | 0.284831 | 8.3:+53391774 | None:intergenic |
| TCATTGCTAATTGTTTCTTT+AGG | 0.292280 | 8.3:+53392344 | None:intergenic |
| TCAAAATGGTAAAGAGGATT+TGG | 0.306061 | 8.3:-53392111 | MS.gene59880:CDS |
| TCACGAAAGTTGAGGGTTAC+AGG | 0.325893 | 8.3:-53392722 | MS.gene59880:CDS |
| GTGTCTATGGATGTTGGTTT+TGG | 0.330660 | 8.3:+53392287 | None:intergenic |
| CATTATAGTTCTCCCTTAAG+AGG | 0.334811 | 8.3:+53391602 | None:intergenic |
| GTTCTAGTGATTGCTGCATT+TGG | 0.340403 | 8.3:-53391648 | MS.gene59880:CDS |
| CTCCATTTGTTAACTGGAAT+CGG | 0.348473 | 8.3:+53392692 | None:intergenic |
| TCTAAATCTTTATTATTTGA+AGG | 0.357574 | 8.3:+53392518 | None:intergenic |
| AACAAATGAAAAGGCTCAAA+AGG | 0.366924 | 8.3:-53392051 | MS.gene59880:CDS |
| TTGGAGCCTATGTGTCATAT+TGG | 0.385338 | 8.3:-53391629 | MS.gene59880:CDS |
| TGATTCTTGCTTGACTCATA+AGG | 0.387472 | 8.3:+53391885 | None:intergenic |
| GGTTACCAAAGAAAATTTAG+AGG | 0.391549 | 8.3:-53391991 | MS.gene59880:CDS |
| TCAAATGAAGATTGAGTTGC+TGG | 0.398349 | 8.3:-53392750 | MS.gene59880:CDS |
| ATAGATGAAAAGCCTCAAAA+TGG | 0.404493 | 8.3:-53392125 | MS.gene59880:CDS |
| AATTTAGAGGAAAAGATAGT+AGG | 0.419722 | 8.3:-53391978 | MS.gene59880:CDS |
| AATAGATGAAAAGCCTCAAA+AGG | 0.421979 | 8.3:-53392252 | MS.gene59880:CDS |
| AATTTGCTGCTACTTCTTCT+CGG | 0.423071 | 8.3:-53391743 | MS.gene59880:CDS |
| ACATGAAGAAGGTAAGCTTC+AGG | 0.423364 | 8.3:+53393031 | None:intergenic |
| TTTCTGGAACAGGATATGTT+TGG | 0.435725 | 8.3:+53392660 | None:intergenic |
| ACTTGTGATGATTGTGAAGT+TGG | 0.436730 | 8.3:+53392569 | None:intergenic |
| GTTTCTTTCATCTCTGATAG+AGG | 0.440166 | 8.3:+53393055 | None:intergenic |
| CAATGACAATAACCCTCAAA+AGG | 0.440997 | 8.3:-53392327 | MS.gene59880:CDS |
| TTGGTTCTCTCTATGGATGT+TGG | 0.448014 | 8.3:+53392155 | None:intergenic |
| GACCGATTCCAGTTAACAAA+TGG | 0.451924 | 8.3:-53392694 | MS.gene59880:CDS |
| CCCAATCAAGAAGGGAAGAA+TGG | 0.459931 | 8.3:-53391774 | MS.gene59880:CDS |
| TTGGTTCTCTCTGTGGATGT+TGG | 0.461455 | 8.3:+53392080 | None:intergenic |
| CTGAAGATGCTGAGAAAGAA+AGG | 0.464414 | 8.3:-53391947 | MS.gene59880:CDS |
| TTCTTCCCTTCTTGATTGGG+AGG | 0.466684 | 8.3:+53391777 | None:intergenic |
| ATAGATGAAAAGCCGCAAAA+TGG | 0.474454 | 8.3:-53392197 | MS.gene59880:CDS |
| TTGGTTGTGTCTATGGATGT+TGG | 0.475530 | 8.3:+53392281 | None:intergenic |
| TGCTCCAAATGTTCCAGAGA+AGG | 0.484905 | 8.3:-53391823 | MS.gene59880:CDS |
| CAAAACACAAACAAATGAAA+AGG | 0.491199 | 8.3:-53392060 | MS.gene59880:CDS |
| GCCGCAAAATGGTCAAGTAT+TGG | 0.497366 | 8.3:-53392186 | MS.gene59880:CDS |
| TCAATGCTTTGAGAAGTTTG+AGG | 0.520952 | 8.3:+53392407 | None:intergenic |
| AAATGTTCCAGAGAAGGAAA+AGG | 0.521289 | 8.3:-53391817 | MS.gene59880:CDS |
| GAAAGTTGCGACCGGAAAGT+TGG | 0.529825 | 8.3:+53393106 | None:intergenic |
| CAGGAAGATAAACATGAAGA+AGG | 0.535239 | 8.3:+53393020 | None:intergenic |
| AATGACAATAACCCTCAAAA+GGG | 0.540210 | 8.3:-53392326 | MS.gene59880:CDS |
| GAAAGAAAGGAACTCAAAGA+AGG | 0.547668 | 8.3:-53391934 | MS.gene59880:CDS |
| ACAAATGAAAAGGCTCAAAA+GGG | 0.550919 | 8.3:-53392050 | MS.gene59880:CDS |
| AAAGCCTCAAAATGGTAAAG+AGG | 0.553368 | 8.3:-53392117 | MS.gene59880:CDS |
| GGACATGTCACGAAAGTTGA+GGG | 0.556517 | 8.3:-53392729 | MS.gene59880:CDS |
| TAAAGATTTAGATGAAGCAA+AGG | 0.558689 | 8.3:-53392507 | MS.gene59880:CDS |
| AGAATTCCTCCCAATCAAGA+AGG | 0.561804 | 8.3:-53391783 | MS.gene59880:CDS |
| AGACATTTAGCTGAAAATGT+AGG | 0.570668 | 8.3:-53391678 | MS.gene59880:CDS |
| GGAAAACCAATATGACACAT+AGG | 0.573601 | 8.3:+53391623 | None:intergenic |
| CTTGAAGCCAAATTTGAACA+AGG | 0.579441 | 8.3:-53392620 | MS.gene59880:CDS |
| TGGACATGTCACGAAAGTTG+AGG | 0.582103 | 8.3:-53392730 | MS.gene59880:CDS |
| AGAAAGGAACTCAAAGAAGG+AGG | 0.597966 | 8.3:-53391931 | MS.gene59880:CDS |
| ATAGATGAAAAGCCTCAAAA+GGG | 0.602281 | 8.3:-53392251 | MS.gene59880:CDS |
| GACGAACTGAAAGTTGCGAC+CGG | 0.608677 | 8.3:+53393098 | None:intergenic |
| GTTTCTTTAGGAATTTGAGA+TGG | 0.609368 | 8.3:+53392356 | None:intergenic |
| GAATTCCTCCCAATCAAGAA+GGG | 0.614961 | 8.3:-53391782 | MS.gene59880:CDS |
| TTTGTGACAAGAATTGCAGA+AGG | 0.621365 | 8.3:-53391720 | MS.gene59880:CDS |
| AAAGGCTCAAAAGGGTGAAG+AGG | 0.622355 | 8.3:-53392042 | MS.gene59880:CDS |
| TTGTGACAAGAATTGCAGAA+GGG | 0.648697 | 8.3:-53391719 | MS.gene59880:CDS |
| TCCTGTTCCAGAAAATAGTG+TGG | 0.670105 | 8.3:-53392651 | MS.gene59880:CDS |
| ATTGCAGAAGGGAAATTGAG+TGG | 0.672004 | 8.3:-53391708 | MS.gene59880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTAAATCTTTATTATTTGA+AGG | + | chr8.3:53392241-53392260 | None:intergenic | 15.0% |
| !! | TATCATATGAATTGTACTTA+CGG | + | chr8.3:53391798-53391817 | None:intergenic | 20.0% |
| !!! | TATTTCTGTTTTGATTTTGT+AGG | - | chr8.3:53391971-53391990 | MS.gene59880:CDS | 20.0% |
| !!! | TCAAAACAGAAATATAGTTT+TGG | + | chr8.3:53391965-53391984 | None:intergenic | 20.0% |
| ! | AAAGTCAAAATTTGTGTGTA+TGG | - | chr8.3:53391922-53391941 | MS.gene59880:CDS | 25.0% |
| ! | AATTTAGAGGAAAAGATAGT+AGG | - | chr8.3:53392778-53392797 | MS.gene59880:intron | 25.0% |
| ! | CAAAACACAAACAAATGAAA+AGG | - | chr8.3:53392696-53392715 | MS.gene59880:CDS | 25.0% |
| ! | TAAAGATTTAGATGAAGCAA+AGG | - | chr8.3:53392249-53392268 | MS.gene59880:CDS | 25.0% |
| !! | ACCAATTTCTCTATTGTTTT+TGG | + | chr8.3:53392748-53392767 | None:intergenic | 25.0% |
| !! | CTTTTCATCTATTTGTGTTT+TGG | + | chr8.3:53392623-53392642 | None:intergenic | 25.0% |
| !! | CTTTTCATTTGTTTGTGTTT+TGG | + | chr8.3:53392698-53392717 | None:intergenic | 25.0% |
| !! | CTTTTCCTCTAAATTTTCTT+TGG | + | chr8.3:53392773-53392792 | None:intergenic | 25.0% |
| !! | TCATTGCTAATTGTTTCTTT+AGG | + | chr8.3:53392415-53392434 | None:intergenic | 25.0% |
| !! | TGATTTTGTAGGTTTTACAA+AGG | - | chr8.3:53391982-53392001 | MS.gene59880:CDS | 25.0% |
| !!! | AATTTTCTCCATTTGTTAAC+TGG | + | chr8.3:53392073-53392092 | None:intergenic | 25.0% |
| !!! | CTTTTCATCTATTTGCTTTT+TGG | + | chr8.3:53392497-53392516 | None:intergenic | 25.0% |
| !!! | TTTTGGTTTGATTATATAGC+AGG | + | chr8.3:53391948-53391967 | None:intergenic | 25.0% |
| AACAAATGAAAAGGCTCAAA+AGG | - | chr8.3:53392705-53392724 | MS.gene59880:CDS | 30.0% | |
| AATAGATGAAAAGCCTCAAA+AGG | - | chr8.3:53392504-53392523 | MS.gene59880:CDS | 30.0% | |
| AATGACAATAACCCTCAAAA+GGG | - | chr8.3:53392430-53392449 | MS.gene59880:CDS | 30.0% | |
| ACAAATGAAAAGGCTCAAAA+GGG | - | chr8.3:53392706-53392725 | MS.gene59880:CDS | 30.0% | |
| AGACATTTAGCTGAAAATGT+AGG | - | chr8.3:53393078-53393097 | MS.gene59880:CDS | 30.0% | |
| ATAGATGAAAAGCCTCAAAA+GGG | - | chr8.3:53392505-53392524 | MS.gene59880:CDS | 30.0% | |
| ATAGATGAAAAGCCTCAAAA+TGG | - | chr8.3:53392505-53392524 | MS.gene59880:CDS | 30.0% | |
| GCCAAAAACAATAGAGAAAT+TGG | - | chr8.3:53392744-53392763 | MS.gene59880:CDS | 30.0% | |
| GGTTACCAAAGAAAATTTAG+AGG | - | chr8.3:53392765-53392784 | MS.gene59880:CDS | 30.0% | |
| TCAAAATGGTAAAGAGGATT+TGG | - | chr8.3:53392645-53392664 | MS.gene59880:CDS | 30.0% | |
| ! | AAATCCTCTTTACCATTTTG+AGG | + | chr8.3:53392646-53392665 | None:intergenic | 30.0% |
| ! | GTTTCTTTAGGAATTTGAGA+TGG | + | chr8.3:53392403-53392422 | None:intergenic | 30.0% |
| !! | ATGCCTTTAACTTGTTTACA+TGG | - | chr8.3:53391763-53391782 | MS.gene59880:CDS | 30.0% |
| !! | GTTGATTCTTCCAATTTTTG+TGG | + | chr8.3:53392307-53392326 | None:intergenic | 30.0% |
| !!! | CTTTTTTCTACTTCTTGTTG+AGG | + | chr8.3:53392217-53392236 | None:intergenic | 30.0% |
| AAAGCCTCAAAATGGTAAAG+AGG | - | chr8.3:53392639-53392658 | MS.gene59880:CDS | 35.0% | |
| AAATGTTCCAGAGAAGGAAA+AGG | - | chr8.3:53392939-53392958 | MS.gene59880:intron | 35.0% | |
| ACTTGTGATGATTGTGAAGT+TGG | + | chr8.3:53392190-53392209 | None:intergenic | 35.0% | |
| ATAGATGAAAAGCCGCAAAA+TGG | - | chr8.3:53392559-53392578 | MS.gene59880:CDS | 35.0% | |
| CAATGACAATAACCCTCAAA+AGG | - | chr8.3:53392429-53392448 | MS.gene59880:CDS | 35.0% | |
| CAGGAAGATAAACATGAAGA+AGG | + | chr8.3:53391739-53391758 | None:intergenic | 35.0% | |
| CGACCATGTAAACAAGTTAA+AGG | + | chr8.3:53391769-53391788 | None:intergenic | 35.0% | |
| CTTCTTCATGTTTATCTTCC+TGG | - | chr8.3:53391737-53391756 | MS.gene59880:CDS | 35.0% | |
| CTTGAAGCCAAATTTGAACA+AGG | - | chr8.3:53392136-53392155 | MS.gene59880:CDS | 35.0% | |
| GAAAGAAAGGAACTCAAAGA+AGG | - | chr8.3:53392822-53392841 | MS.gene59880:intron | 35.0% | |
| GAGAGTTCCTTGTTCAAATT+TGG | + | chr8.3:53392146-53392165 | None:intergenic | 35.0% | |
| GGAAAACCAATATGACACAT+AGG | + | chr8.3:53393136-53393155 | None:intergenic | 35.0% | |
| GTTTCTTTCATCTCTGATAG+AGG | + | chr8.3:53391704-53391723 | None:intergenic | 35.0% | |
| TATTCCACCACCACAAAAAT+TGG | - | chr8.3:53392294-53392313 | MS.gene59880:CDS | 35.0% | |
| TGATTCTTGCTTGACTCATA+AGG | + | chr8.3:53392874-53392893 | None:intergenic | 35.0% | |
| TTGTGACAAGAATTGCAGAA+GGG | - | chr8.3:53393037-53393056 | MS.gene59880:CDS | 35.0% | |
| TTTGTGACAAGAATTGCAGA+AGG | - | chr8.3:53393036-53393055 | MS.gene59880:CDS | 35.0% | |
| ! | AATTCTTCTTGACCCTTTTG+AGG | + | chr8.3:53392520-53392539 | None:intergenic | 35.0% |
| ! | AATTCTTGTTGACCCTTTTG+AGG | + | chr8.3:53392445-53392464 | None:intergenic | 35.0% |
| ! | ACAAGTTAAAGGCATATACC+AGG | + | chr8.3:53391758-53391777 | None:intergenic | 35.0% |
| ! | ATTCTTGTTGACCCTTTTGA+GGG | + | chr8.3:53392444-53392463 | None:intergenic | 35.0% |
| ! | CTCCATTTGTTAACTGGAAT+CGG | + | chr8.3:53392067-53392086 | None:intergenic | 35.0% |
| ! | GATTCTTCCAATTTTTGTGG+TGG | + | chr8.3:53392304-53392323 | None:intergenic | 35.0% |
| ! | GGCTTTTCATCTATTGATGT+TGG | + | chr8.3:53392553-53392572 | None:intergenic | 35.0% |
| ! | TCAAATGAAGATTGAGTTGC+TGG | - | chr8.3:53392006-53392025 | MS.gene59880:CDS | 35.0% |
| ! | TCCAATACTTGACCATTTTG+CGG | + | chr8.3:53392574-53392593 | None:intergenic | 35.0% |
| !! | AATTTGCTGCTACTTCTTCT+CGG | - | chr8.3:53393013-53393032 | MS.gene59880:intron | 35.0% |
| !! | TCAATGCTTTGAGAAGTTTG+AGG | + | chr8.3:53392352-53392371 | None:intergenic | 35.0% |
| !! | TTTCTGGAACAGGATATGTT+TGG | + | chr8.3:53392099-53392118 | None:intergenic | 35.0% |
| !!! | TTGCTTTTTGGTTGTGTCTA+TGG | + | chr8.3:53392485-53392504 | None:intergenic | 35.0% |
| !!! | TTGTGTTTTGGTTCTCTCTA+TGG | + | chr8.3:53392611-53392630 | None:intergenic | 35.0% |
| !!! | TTTTCCTTCTCTGGAACATT+TGG | + | chr8.3:53392940-53392959 | None:intergenic | 35.0% |
| !!! | TTTTTGTGGTGGTGGAATAT+TGG | + | chr8.3:53392293-53392312 | None:intergenic | 35.0% |
| ACATGAAGAAGGTAAGCTTC+AGG | + | chr8.3:53391728-53391747 | None:intergenic | 40.0% | |
| AGAAAGGAACTCAAAGAAGG+AGG | - | chr8.3:53392825-53392844 | MS.gene59880:intron | 40.0% | |
| AGAATTCCTCCCAATCAAGA+AGG | - | chr8.3:53392973-53392992 | MS.gene59880:intron | 40.0% | |
| ATTGCAGAAGGGAAATTGAG+TGG | - | chr8.3:53393048-53393067 | MS.gene59880:CDS | 40.0% | |
| CCATTCTTCCCTTCTTGATT+GGG | + | chr8.3:53392985-53393004 | None:intergenic | 40.0% | |
| CTGAAGATGCTGAGAAAGAA+AGG | - | chr8.3:53392809-53392828 | MS.gene59880:intron | 40.0% | |
| GAATTCCTCCCAATCAAGAA+GGG | - | chr8.3:53392974-53392993 | MS.gene59880:intron | 40.0% | |
| GTTCTAGTGATTGCTGCATT+TGG | - | chr8.3:53393108-53393127 | MS.gene59880:CDS | 40.0% | |
| TCCATTCTTCCCTTCTTGAT+TGG | + | chr8.3:53392986-53393005 | None:intergenic | 40.0% | |
| TCCTGTTCCAGAAAATAGTG+TGG | - | chr8.3:53392105-53392124 | MS.gene59880:CDS | 40.0% | |
| TTGGAGCCTATGTGTCATAT+TGG | - | chr8.3:53393127-53393146 | MS.gene59880:CDS | 40.0% | |
| TTGGTTGTGTCTATGGATGT+TGG | + | chr8.3:53392478-53392497 | None:intergenic | 40.0% | |
| ! | CATTTAGAGCACCAACTTTC+CGG | - | chr8.3:53391639-53391658 | MS.gene59880:CDS | 40.0% |
| ! | GACCGATTCCAGTTAACAAA+TGG | - | chr8.3:53392062-53392081 | MS.gene59880:CDS | 40.0% |
| ! | TCTTCCAATTTTTGTGGTGG+TGG | + | chr8.3:53392301-53392320 | None:intergenic | 40.0% |
| ! | TTCTCTGCCACACTATTTTC+TGG | + | chr8.3:53392115-53392134 | None:intergenic | 40.0% |
| ! | TTGGTTCTCTCTATGGATGT+TGG | + | chr8.3:53392604-53392623 | None:intergenic | 40.0% |
| !!! | GTGTCTATGGATGTTGGTTT+TGG | + | chr8.3:53392472-53392491 | None:intergenic | 40.0% |
| !!! | TTGTGTTTTGGTTCTCTCTG+TGG | + | chr8.3:53392686-53392705 | None:intergenic | 40.0% |
| AAAGGCTCAAAAGGGTGAAG+AGG | - | chr8.3:53392714-53392733 | MS.gene59880:CDS | 45.0% | |
| CCCAATCAAGAAGGGAAGAA+TGG | - | chr8.3:53392982-53393001 | MS.gene59880:intron | 45.0% | |
| GCCGCAAAATGGTCAAGTAT+TGG | - | chr8.3:53392570-53392589 | MS.gene59880:CDS | 45.0% | |
| GGACATGTCACGAAAGTTGA+GGG | - | chr8.3:53392027-53392046 | MS.gene59880:CDS | 45.0% | |
| TCACGAAAGTTGAGGGTTAC+AGG | - | chr8.3:53392034-53392053 | MS.gene59880:CDS | 45.0% | |
| TGCTCCAAATGTTCCAGAGA+AGG | - | chr8.3:53392933-53392952 | MS.gene59880:intron | 45.0% | |
| TGGACATGTCACGAAAGTTG+AGG | - | chr8.3:53392026-53392045 | MS.gene59880:CDS | 45.0% | |
| TTCTTCCCTTCTTGATTGGG+AGG | + | chr8.3:53392982-53393001 | None:intergenic | 45.0% | |
| ! | ACAATGACACAGTTGATGCG+AGG | + | chr8.3:53391869-53391888 | None:intergenic | 45.0% |
| ! | CAAGCTTCCTTTTCCTTCTC+TGG | + | chr8.3:53392949-53392968 | None:intergenic | 45.0% |
| ! | TTGGTTCTCTCTGTGGATGT+TGG | + | chr8.3:53392679-53392698 | None:intergenic | 45.0% |
| !!! | GCCACACTATTTTCTGGAAC+AGG | + | chr8.3:53392109-53392128 | None:intergenic | 45.0% |
| GAAAGTTGCGACCGGAAAGT+TGG | + | chr8.3:53391653-53391672 | None:intergenic | 50.0% | |
| GACGAACTGAAAGTTGCGAC+CGG | + | chr8.3:53391661-53391680 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 53391617 | 53393161 | 53391617 | ID=MS.gene59880 |
| chr8.3 | mRNA | 53391617 | 53393161 | 53391617 | ID=MS.gene59880.t1;Parent=MS.gene59880 |
| chr8.3 | exon | 53393020 | 53393161 | 53393020 | ID=MS.gene59880.t1.exon1;Parent=MS.gene59880.t1 |
| chr8.3 | CDS | 53393020 | 53393161 | 53393020 | ID=cds.MS.gene59880.t1;Parent=MS.gene59880.t1 |
| chr8.3 | exon | 53391617 | 53392785 | 53391617 | ID=MS.gene59880.t1.exon2;Parent=MS.gene59880.t1 |
| chr8.3 | CDS | 53391617 | 53392785 | 53391617 | ID=cds.MS.gene59880.t1;Parent=MS.gene59880.t1 |
| Gene Sequence |
| Protein sequence |
