Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59968.t1 | XP_003628043.1 | 89.4 | 208 | 22 | 0 | 1 | 208 | 234 | 441 | 3.70E-102 | 380.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59968.t1 | Q9FH97 | 43.1 | 209 | 112 | 5 | 1 | 208 | 230 | 432 | 1.1e-38 | 161.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59968.t1 | Q1S5L5 | 89.4 | 208 | 22 | 0 | 1 | 208 | 234 | 441 | 2.6e-102 | 380.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene59968 | 0.851486 | 8.60E-61 | -1.69E-46 |
| MS.gene05016 | MS.gene59968 | 0.825603 | 4.28E-54 | -1.69E-46 |
| MS.gene050584 | MS.gene59968 | 0.800045 | 1.73E-48 | -1.69E-46 |
| MS.gene050585 | MS.gene59968 | 0.800828 | 1.20E-48 | -1.69E-46 |
| MS.gene050586 | MS.gene59968 | 0.836465 | 9.21E-57 | -1.69E-46 |
| MS.gene050587 | MS.gene59968 | 0.808515 | 2.98E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene59968 | 0.840809 | 6.95E-58 | -1.69E-46 |
| MS.gene050808 | MS.gene59968 | 0.821758 | 3.41E-53 | -1.69E-46 |
| MS.gene051789 | MS.gene59968 | 0.817734 | 2.83E-52 | -1.69E-46 |
| MS.gene052665 | MS.gene59968 | 0.812942 | 3.29E-51 | -1.69E-46 |
| MS.gene05456 | MS.gene59968 | 0.823467 | 1.36E-53 | -1.69E-46 |
| MS.gene056553 | MS.gene59968 | 0.801051 | 1.08E-48 | -1.69E-46 |
| MS.gene057060 | MS.gene59968 | 0.813613 | 2.34E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59968.t1 | MTR_8g041770 | 89.423 | 208 | 22 | 0 | 1 | 208 | 234 | 441 | 2.58e-135 | 386 |
| MS.gene59968.t1 | MTR_0190s0020 | 74.519 | 208 | 53 | 0 | 1 | 208 | 235 | 442 | 2.13e-110 | 323 |
| MS.gene59968.t1 | MTR_4g022825 | 62.500 | 208 | 75 | 2 | 1 | 207 | 234 | 439 | 1.29e-90 | 273 |
| MS.gene59968.t1 | MTR_3g088420 | 61.244 | 209 | 78 | 2 | 1 | 208 | 227 | 433 | 3.56e-88 | 266 |
| MS.gene59968.t1 | MTR_4g022720 | 61.722 | 209 | 77 | 2 | 1 | 208 | 229 | 435 | 8.04e-88 | 265 |
| MS.gene59968.t1 | MTR_4g022800 | 61.905 | 210 | 76 | 2 | 1 | 208 | 235 | 442 | 1.53e-87 | 265 |
| MS.gene59968.t1 | MTR_4g022670 | 60.287 | 209 | 80 | 2 | 1 | 208 | 235 | 441 | 1.81e-86 | 262 |
| MS.gene59968.t1 | MTR_8g040780 | 60.194 | 206 | 79 | 2 | 1 | 203 | 22 | 227 | 2.28e-86 | 255 |
| MS.gene59968.t1 | MTR_4g094835 | 60.287 | 209 | 77 | 3 | 1 | 204 | 235 | 442 | 1.20e-85 | 260 |
| MS.gene59968.t1 | MTR_4g094832 | 60.287 | 209 | 77 | 3 | 1 | 204 | 219 | 426 | 9.30e-85 | 257 |
| MS.gene59968.t1 | MTR_3g026310 | 57.820 | 211 | 84 | 2 | 1 | 208 | 240 | 448 | 9.43e-85 | 258 |
| MS.gene59968.t1 | MTR_7g026860 | 59.615 | 208 | 80 | 2 | 1 | 208 | 235 | 438 | 3.13e-82 | 251 |
| MS.gene59968.t1 | MTR_4g094842 | 56.311 | 206 | 90 | 0 | 1 | 206 | 241 | 446 | 1.38e-81 | 249 |
| MS.gene59968.t1 | MTR_4g094838 | 58.373 | 209 | 81 | 3 | 1 | 204 | 221 | 428 | 3.88e-81 | 248 |
| MS.gene59968.t1 | MTR_4g094828 | 49.770 | 217 | 99 | 5 | 1 | 208 | 235 | 450 | 1.69e-63 | 203 |
| MS.gene59968.t1 | MTR_4g022760 | 48.558 | 208 | 62 | 1 | 1 | 208 | 235 | 397 | 6.22e-61 | 195 |
| MS.gene59968.t1 | MTR_8g079710 | 49.761 | 209 | 95 | 5 | 1 | 199 | 228 | 436 | 8.43e-60 | 193 |
| MS.gene59968.t1 | MTR_4g022290 | 47.248 | 218 | 102 | 5 | 1 | 206 | 227 | 443 | 4.84e-54 | 179 |
| MS.gene59968.t1 | MTR_4g094825 | 52.980 | 151 | 59 | 2 | 55 | 204 | 248 | 387 | 8.10e-48 | 161 |
| MS.gene59968.t1 | MTR_3g101900 | 40.191 | 209 | 122 | 3 | 2 | 208 | 241 | 448 | 2.41e-46 | 159 |
| MS.gene59968.t1 | MTR_3g102020 | 40.097 | 207 | 121 | 3 | 1 | 205 | 243 | 448 | 5.17e-45 | 155 |
| MS.gene59968.t1 | MTR_3g101930 | 38.942 | 208 | 125 | 2 | 1 | 207 | 248 | 454 | 2.39e-44 | 153 |
| MS.gene59968.t1 | MTR_6g016815 | 43.269 | 208 | 56 | 4 | 1 | 208 | 236 | 381 | 3.00e-44 | 152 |
| MS.gene59968.t1 | MTR_3g101970 | 38.278 | 209 | 126 | 3 | 1 | 207 | 229 | 436 | 4.44e-42 | 147 |
| MS.gene59968.t1 | MTR_3g101960 | 39.024 | 205 | 122 | 3 | 1 | 203 | 242 | 445 | 8.55e-42 | 147 |
| MS.gene59968.t1 | MTR_3g102010 | 39.048 | 210 | 125 | 3 | 1 | 208 | 243 | 451 | 1.50e-41 | 146 |
| MS.gene59968.t1 | MTR_6g034485 | 68.605 | 86 | 27 | 0 | 1 | 86 | 40 | 125 | 2.00e-37 | 127 |
| MS.gene59968.t1 | MTR_5g081960 | 34.536 | 194 | 125 | 2 | 16 | 208 | 294 | 486 | 1.94e-33 | 125 |
| MS.gene59968.t1 | MTR_7g026770 | 55.769 | 104 | 46 | 0 | 1 | 104 | 198 | 301 | 1.28e-32 | 119 |
| MS.gene59968.t1 | MTR_4g015180 | 36.216 | 185 | 116 | 2 | 25 | 208 | 304 | 487 | 6.82e-32 | 120 |
| MS.gene59968.t1 | MTR_3g070170 | 33.831 | 201 | 130 | 3 | 6 | 204 | 267 | 466 | 3.05e-30 | 116 |
| MS.gene59968.t1 | MTR_6g045553 | 31.250 | 208 | 138 | 3 | 1 | 204 | 265 | 471 | 9.05e-27 | 106 |
| MS.gene59968.t1 | MTR_7g026780 | 47.748 | 111 | 33 | 3 | 98 | 208 | 26 | 111 | 1.14e-24 | 94.0 |
| MS.gene59968.t1 | MTR_3g102030 | 33.129 | 163 | 90 | 3 | 1 | 162 | 176 | 320 | 1.88e-21 | 90.1 |
| MS.gene59968.t1 | MTR_7g026870 | 54.286 | 70 | 27 | 1 | 53 | 117 | 82 | 151 | 6.28e-18 | 77.4 |
| MS.gene59968.t1 | MTR_4g007540 | 25.126 | 199 | 144 | 3 | 1 | 195 | 227 | 424 | 1.94e-17 | 80.1 |
| MS.gene59968.t1 | MTR_8g075610 | 24.631 | 203 | 138 | 3 | 1 | 195 | 216 | 411 | 6.31e-16 | 75.9 |
| MS.gene59968.t1 | MTR_2g064495 | 24.242 | 198 | 147 | 2 | 1 | 195 | 226 | 423 | 2.45e-15 | 73.9 |
| MS.gene59968.t1 | MTR_2g105330 | 24.242 | 198 | 147 | 2 | 1 | 195 | 226 | 423 | 5.64e-15 | 73.2 |
| MS.gene59968.t1 | MTR_4g127650 | 23.364 | 214 | 146 | 3 | 1 | 197 | 236 | 448 | 1.63e-14 | 71.6 |
| MS.gene59968.t1 | MTR_3g098980 | 25.532 | 188 | 133 | 3 | 2 | 189 | 238 | 418 | 1.33e-13 | 68.9 |
| MS.gene59968.t1 | MTR_3g026950 | 26.484 | 219 | 123 | 7 | 1 | 192 | 229 | 436 | 3.97e-13 | 67.8 |
| MS.gene59968.t1 | MTR_7g026880 | 55.556 | 54 | 22 | 1 | 155 | 208 | 2 | 53 | 5.78e-13 | 61.6 |
| MS.gene59968.t1 | MTR_3g049150 | 24.528 | 212 | 126 | 6 | 1 | 189 | 229 | 429 | 1.02e-12 | 66.6 |
| MS.gene59968.t1 | MTR_3g049140 | 24.038 | 208 | 137 | 7 | 1 | 192 | 27 | 229 | 2.06e-12 | 64.7 |
| MS.gene59968.t1 | MTR_6g015815 | 25.000 | 200 | 144 | 3 | 1 | 198 | 258 | 453 | 3.44e-12 | 65.1 |
| MS.gene59968.t1 | MTR_4g097090 | 25.728 | 206 | 135 | 6 | 1 | 189 | 236 | 440 | 6.21e-12 | 64.3 |
| MS.gene59968.t1 | MTR_6g015320 | 25.500 | 200 | 138 | 5 | 1 | 195 | 251 | 444 | 7.29e-12 | 63.9 |
| MS.gene59968.t1 | MTR_8g096530 | 27.848 | 158 | 105 | 3 | 2 | 157 | 232 | 382 | 1.63e-11 | 62.8 |
| MS.gene59968.t1 | MTR_6g015315 | 24.883 | 213 | 130 | 8 | 1 | 198 | 248 | 445 | 1.74e-11 | 62.8 |
| MS.gene59968.t1 | MTR_7g014250 | 25.000 | 208 | 141 | 6 | 1 | 199 | 249 | 450 | 3.82e-11 | 62.0 |
| MS.gene59968.t1 | MTR_6g015850 | 25.871 | 201 | 140 | 5 | 1 | 198 | 256 | 450 | 4.09e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59968.t1 | AT5G67150 | 41.429 | 210 | 119 | 3 | 1 | 208 | 239 | 446 | 4.24e-53 | 176 |
| MS.gene59968.t1 | AT3G50270 | 39.906 | 213 | 122 | 3 | 1 | 208 | 237 | 448 | 4.76e-48 | 163 |
| MS.gene59968.t1 | AT5G67160 | 43.062 | 209 | 112 | 5 | 1 | 208 | 230 | 432 | 1.03e-47 | 162 |
| MS.gene59968.t1 | AT3G50280 | 39.524 | 210 | 121 | 3 | 1 | 205 | 102 | 310 | 6.41e-46 | 154 |
| MS.gene59968.t1 | AT3G50300 | 43.590 | 195 | 104 | 3 | 1 | 190 | 232 | 425 | 2.79e-45 | 155 |
| MS.gene59968.t1 | AT3G50280 | 39.524 | 210 | 121 | 3 | 1 | 205 | 232 | 440 | 1.04e-44 | 154 |
| MS.gene59968.t1 | AT5G07860 | 40.191 | 209 | 120 | 4 | 1 | 207 | 243 | 448 | 2.80e-42 | 148 |
| MS.gene59968.t1 | AT5G42830 | 38.095 | 210 | 127 | 3 | 1 | 208 | 241 | 449 | 4.13e-40 | 142 |
| MS.gene59968.t1 | AT5G01210 | 33.469 | 245 | 125 | 4 | 1 | 208 | 226 | 469 | 5.07e-39 | 140 |
| MS.gene59968.t1 | AT5G38130 | 40.206 | 194 | 110 | 3 | 1 | 189 | 250 | 442 | 1.19e-37 | 136 |
| MS.gene59968.t1 | AT5G07870 | 38.679 | 212 | 123 | 4 | 1 | 208 | 253 | 461 | 2.79e-37 | 135 |
| MS.gene59968.t1 | AT3G50290 | 46.250 | 160 | 80 | 3 | 1 | 155 | 111 | 269 | 7.97e-36 | 127 |
| MS.gene59968.t1 | AT5G07850 | 38.532 | 218 | 116 | 7 | 1 | 208 | 244 | 453 | 9.03e-36 | 130 |
| MS.gene59968.t1 | AT2G39980 | 37.838 | 185 | 113 | 2 | 25 | 208 | 297 | 480 | 1.80e-34 | 127 |
| MS.gene59968.t1 | AT5G23940 | 31.731 | 208 | 137 | 3 | 1 | 204 | 242 | 448 | 1.68e-29 | 114 |
| MS.gene59968.t1 | AT5G48930 | 25.628 | 199 | 143 | 3 | 1 | 195 | 227 | 424 | 2.23e-16 | 77.0 |
| MS.gene59968.t1 | AT2G19070 | 28.302 | 212 | 135 | 5 | 1 | 197 | 234 | 443 | 4.82e-16 | 76.3 |
| MS.gene59968.t1 | AT3G29590 | 23.383 | 201 | 151 | 2 | 2 | 199 | 242 | 442 | 9.77e-13 | 66.6 |
| MS.gene59968.t1 | AT5G61160 | 26.633 | 199 | 128 | 6 | 5 | 195 | 250 | 438 | 1.50e-12 | 66.2 |
| MS.gene59968.t1 | AT1G28680 | 28.571 | 161 | 107 | 4 | 2 | 160 | 235 | 389 | 1.73e-11 | 62.8 |
| MS.gene59968.t1 | AT3G29635 | 24.873 | 197 | 132 | 5 | 2 | 189 | 249 | 438 | 9.73e-11 | 60.8 |
Find 42 sgRNAs with CRISPR-Local
Find 53 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACCCTGGTTTAATGTTTA+TGG | 0.116946 | 8.4:-57711346 | MS.gene59968:CDS |
| GGAAATATTTGTGTGTTTAA+AGG | 0.251922 | 8.4:-57711262 | MS.gene59968:CDS |
| TGGTAATGATCCTGAGTTTA+TGG | 0.261735 | 8.4:-57711179 | MS.gene59968:CDS |
| GGGAGTGAAAATAATGAAAA+TGG | 0.264658 | 8.4:-57711283 | MS.gene59968:CDS |
| CCATTGAAAGAGGATTATTT+TGG | 0.285934 | 8.4:-57711574 | MS.gene59968:CDS |
| AATGTTTATGGTAATGATTT+TGG | 0.340175 | 8.4:-57711334 | MS.gene59968:CDS |
| GTGCATTATGTGGTGGTTAT+AGG | 0.349094 | 8.4:-57711619 | MS.gene59968:CDS |
| AAAATTCAAAGCCAACTTAG+AGG | 0.353981 | 8.4:-57711734 | MS.gene59968:CDS |
| CCAAAATAATCCTCTTTCAA+TGG | 0.374389 | 8.4:+57711574 | None:intergenic |
| CAATTGCCTCCAAAGTTTCA+TGG | 0.386784 | 8.4:+57711200 | None:intergenic |
| TGGACTTGGTAAAGGTGCTT+TGG | 0.409489 | 8.4:-57711494 | MS.gene59968:CDS |
| CATGAAACTTTGGAGGCAAT+TGG | 0.418429 | 8.4:-57711199 | MS.gene59968:CDS |
| AGGTGTAGAAGATGGTAGTA+TGG | 0.424099 | 8.4:-57711242 | MS.gene59968:CDS |
| TTTGGTTGGGGAAAACCTGT+GGG | 0.472290 | 8.4:-57711316 | MS.gene59968:CDS |
| CTTTGTACTAGCCTCTAAGT+TGG | 0.485280 | 8.4:+57711723 | None:intergenic |
| GTTGATTCCTCCATTGAAAG+AGG | 0.486725 | 8.4:-57711584 | MS.gene59968:CDS |
| CATAATGCACTTCTTCTTGA+GGG | 0.502724 | 8.4:+57711632 | None:intergenic |
| CAAGACAATGGACTTGGTAA+AGG | 0.507284 | 8.4:-57711502 | MS.gene59968:CDS |
| GCACTTCTTCTTGAGGGTCA+AGG | 0.528530 | 8.4:+57711638 | None:intergenic |
| TTCAATGGAGGAATCAACCT+TGG | 0.531124 | 8.4:+57711589 | None:intergenic |
| AATTGCCTCCAAAGTTTCAT+GGG | 0.532415 | 8.4:+57711201 | None:intergenic |
| GTGTTTGTCCCATGAAACTT+TGG | 0.534872 | 8.4:-57711209 | MS.gene59968:CDS |
| GTACAATAGTAAAACATTAG+TGG | 0.537819 | 8.4:-57711377 | MS.gene59968:CDS |
| TACAATAGTAAAACATTAGT+GGG | 0.542055 | 8.4:-57711376 | MS.gene59968:CDS |
| TCCGTTGTTAGCATGAAAGT+TGG | 0.545219 | 8.4:-57711535 | MS.gene59968:CDS |
| ACATAATGCACTTCTTCTTG+AGG | 0.564314 | 8.4:+57711631 | None:intergenic |
| TTGGTTGGGGAAAACCTGTG+GGG | 0.567130 | 8.4:-57711315 | MS.gene59968:CDS |
| TGGTTGGGGAAAACCTGTGG+GGG | 0.578502 | 8.4:-57711314 | MS.gene59968:CDS |
| TTTGTCCCATGAAACTTTGG+AGG | 0.591981 | 8.4:-57711206 | MS.gene59968:CDS |
| AAATAATCCTCTTTCAATGG+AGG | 0.592205 | 8.4:+57711577 | None:intergenic |
| GTGTTTAAAGGTGTAGAAGA+TGG | 0.594759 | 8.4:-57711250 | MS.gene59968:CDS |
| TTGTTGCAAGACAATGGACT+TGG | 0.601437 | 8.4:-57711508 | MS.gene59968:CDS |
| ATACCAAGAGTAATAAAACT+AGG | 0.607573 | 8.4:+57711400 | None:intergenic |
| GGTGATTTGTTGCAAGACAA+TGG | 0.609643 | 8.4:-57711514 | MS.gene59968:CDS |
| TGGTTATAGGCGTTAGACCA+AGG | 0.625694 | 8.4:-57711606 | MS.gene59968:CDS |
| TCAAGAAGAAGTGCATTATG+TGG | 0.629418 | 8.4:-57711629 | MS.gene59968:CDS |
| GTCACAACATCCATAAACTC+AGG | 0.634083 | 8.4:+57711169 | None:intergenic |
| AGAAGAAGTGCATTATGTGG+TGG | 0.641210 | 8.4:-57711626 | MS.gene59968:CDS |
| TAGTGGGTAGTAGTTCACCC+TGG | 0.662355 | 8.4:-57711360 | MS.gene59968:CDS |
| ATTACCATAAACATTAAACC+AGG | 0.672703 | 8.4:+57711342 | None:intergenic |
| ACCAACTTTCATGCTAACAA+CGG | 0.674514 | 8.4:+57711534 | None:intergenic |
| TTACCATAAACATTAAACCA+GGG | 0.701842 | 8.4:+57711343 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAATAGTAAAACATTAGT+GGG | - | chr8.4:57711559-57711578 | MS.gene59968:CDS | 20.0% |
| !!! | AATGTTTATGGTAATGATTT+TGG | - | chr8.4:57711601-57711620 | MS.gene59968:CDS | 20.0% |
| ! | ATACCAAGAGTAATAAAACT+AGG | + | chr8.4:57711538-57711557 | None:intergenic | 25.0% |
| ! | ATTACCATAAACATTAAACC+AGG | + | chr8.4:57711596-57711615 | None:intergenic | 25.0% |
| ! | GGAAATATTTGTGTGTTTAA+AGG | - | chr8.4:57711673-57711692 | MS.gene59968:CDS | 25.0% |
| ! | GTACAATAGTAAAACATTAG+TGG | - | chr8.4:57711558-57711577 | MS.gene59968:CDS | 25.0% |
| ! | TTACCATAAACATTAAACCA+GGG | + | chr8.4:57711595-57711614 | None:intergenic | 25.0% |
| !!! | TTATGGTAATGATTTTGGTT+GGG | - | chr8.4:57711606-57711625 | MS.gene59968:CDS | 25.0% |
| !!! | TTTATGGTAATGATTTTGGT+TGG | - | chr8.4:57711605-57711624 | MS.gene59968:CDS | 25.0% |
| AAAATTCAAAGCCAACTTAG+AGG | - | chr8.4:57711201-57711220 | MS.gene59968:CDS | 30.0% | |
| AAATAATCCTCTTTCAATGG+AGG | + | chr8.4:57711361-57711380 | None:intergenic | 30.0% | |
| CCAAAATAATCCTCTTTCAA+TGG | + | chr8.4:57711364-57711383 | None:intergenic | 30.0% | |
| GGGAGTGAAAATAATGAAAA+TGG | - | chr8.4:57711652-57711671 | MS.gene59968:CDS | 30.0% | |
| ! | AAGCACTTTTCACACATATT+TGG | - | chr8.4:57711251-57711270 | MS.gene59968:CDS | 30.0% |
| ! | CCATTGAAAGAGGATTATTT+TGG | - | chr8.4:57711361-57711380 | MS.gene59968:CDS | 30.0% |
| !!! | ACACCTAGTTTTATTACTCT+TGG | - | chr8.4:57711532-57711551 | MS.gene59968:CDS | 30.0% |
| !!! | TATGGTAATGATTTTGGTTG+GGG | - | chr8.4:57711607-57711626 | MS.gene59968:CDS | 30.0% |
| AATTGCCTCCAAAGTTTCAT+GGG | + | chr8.4:57711737-57711756 | None:intergenic | 35.0% | |
| ACATAATGCACTTCTTCTTG+AGG | + | chr8.4:57711307-57711326 | None:intergenic | 35.0% | |
| ACCAACTTTCATGCTAACAA+CGG | + | chr8.4:57711404-57711423 | None:intergenic | 35.0% | |
| CATAATGCACTTCTTCTTGA+GGG | + | chr8.4:57711306-57711325 | None:intergenic | 35.0% | |
| TCACCCTGGTTTAATGTTTA+TGG | - | chr8.4:57711589-57711608 | MS.gene59968:CDS | 35.0% | |
| TGAAAAATGACTACGAGAGT+TGG | - | chr8.4:57711503-57711522 | MS.gene59968:CDS | 35.0% | |
| ! | GTGTTTAAAGGTGTAGAAGA+TGG | - | chr8.4:57711685-57711704 | MS.gene59968:CDS | 35.0% |
| ! | TCAAGAAGAAGTGCATTATG+TGG | - | chr8.4:57711306-57711325 | MS.gene59968:CDS | 35.0% |
| ! | TGGTAATGATCCTGAGTTTA+TGG | - | chr8.4:57711756-57711775 | MS.gene59968:CDS | 35.0% |
| AGGTGTAGAAGATGGTAGTA+TGG | - | chr8.4:57711693-57711712 | MS.gene59968:CDS | 40.0% | |
| CAATTGCCTCCAAAGTTTCA+TGG | + | chr8.4:57711738-57711757 | None:intergenic | 40.0% | |
| GTCACAACATCCATAAACTC+AGG | + | chr8.4:57711769-57711788 | None:intergenic | 40.0% | |
| GTGCATTATGTGGTGGTTAT+AGG | - | chr8.4:57711316-57711335 | MS.gene59968:CDS | 40.0% | |
| GTGTTTGTCCCATGAAACTT+TGG | - | chr8.4:57711726-57711745 | MS.gene59968:CDS | 40.0% | |
| TCCGTTGTTAGCATGAAAGT+TGG | - | chr8.4:57711400-57711419 | MS.gene59968:CDS | 40.0% | |
| TTCAATGGAGGAATCAACCT+TGG | + | chr8.4:57711349-57711368 | None:intergenic | 40.0% | |
| TTTGTCCCATGAAACTTTGG+AGG | - | chr8.4:57711729-57711748 | MS.gene59968:CDS | 40.0% | |
| ! | AGAAGAAGTGCATTATGTGG+TGG | - | chr8.4:57711309-57711328 | MS.gene59968:CDS | 40.0% |
| ! | CAAGACAATGGACTTGGTAA+AGG | - | chr8.4:57711433-57711452 | MS.gene59968:CDS | 40.0% |
| ! | CATGAAACTTTGGAGGCAAT+TGG | - | chr8.4:57711736-57711755 | MS.gene59968:CDS | 40.0% |
| ! | CTTTGTACTAGCCTCTAAGT+TGG | + | chr8.4:57711215-57711234 | None:intergenic | 40.0% |
| ! | GTTGATTCCTCCATTGAAAG+AGG | - | chr8.4:57711351-57711370 | MS.gene59968:CDS | 40.0% |
| ! | TTCTTGAGGGTCAAGGTTTT+TGG | + | chr8.4:57711293-57711312 | None:intergenic | 40.0% |
| ! | TTGTTGCAAGACAATGGACT+TGG | - | chr8.4:57711427-57711446 | MS.gene59968:CDS | 40.0% |
| !! | GGTGATTTGTTGCAAGACAA+TGG | - | chr8.4:57711421-57711440 | MS.gene59968:CDS | 40.0% |
| TGGTTATAGGCGTTAGACCA+AGG | - | chr8.4:57711329-57711348 | MS.gene59968:CDS | 45.0% | |
| TTTGGTTGGGGAAAACCTGT+GGG | - | chr8.4:57711619-57711638 | MS.gene59968:CDS | 45.0% | |
| !! | TGGACTTGGTAAAGGTGCTT+TGG | - | chr8.4:57711441-57711460 | MS.gene59968:CDS | 45.0% |
| !! | TTTTGGTTGGGGAAAACCTG+TGG | - | chr8.4:57711618-57711637 | MS.gene59968:CDS | 45.0% |
| GCACTTCTTCTTGAGGGTCA+AGG | + | chr8.4:57711300-57711319 | None:intergenic | 50.0% | |
| TTGGTTGGGGAAAACCTGTG+GGG | - | chr8.4:57711620-57711639 | MS.gene59968:CDS | 50.0% | |
| ! | TAGTGGGTAGTAGTTCACCC+TGG | - | chr8.4:57711575-57711594 | MS.gene59968:CDS | 50.0% |
| AAACCTGTGGGGGTTCGAAC+TGG | - | chr8.4:57711631-57711650 | MS.gene59968:CDS | 55.0% | |
| AACCTGTGGGGGTTCGAACT+GGG | - | chr8.4:57711632-57711651 | MS.gene59968:CDS | 55.0% | |
| TGGTTGGGGAAAACCTGTGG+GGG | - | chr8.4:57711621-57711640 | MS.gene59968:CDS | 55.0% | |
| CTCCCAGTTCGAACCCCCAC+AGG | + | chr8.4:57711637-57711656 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 57711166 | 57711791 | 57711166 | ID=MS.gene59968 |
| chr8.4 | mRNA | 57711166 | 57711791 | 57711166 | ID=MS.gene59968.t1;Parent=MS.gene59968 |
| chr8.4 | exon | 57711166 | 57711791 | 57711166 | ID=MS.gene59968.t1.exon1;Parent=MS.gene59968.t1 |
| chr8.4 | CDS | 57711166 | 57711791 | 57711166 | ID=cds.MS.gene59968.t1;Parent=MS.gene59968.t1 |
| Gene Sequence |
| Protein sequence |
