Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60024.t1 | XP_003604378.1 | 100 | 211 | 0 | 0 | 1 | 211 | 1 | 211 | 1.10E-117 | 432.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60024.t1 | Q9SSC7 | 62.7 | 209 | 71 | 5 | 6 | 211 | 5 | 209 | 2.6e-64 | 246.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60024.t1 | B7FGI9 | 100.0 | 211 | 0 | 0 | 1 | 211 | 1 | 211 | 7.8e-118 | 432.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052077 | MS.gene60024 | 0.83354 | 5.03E-56 | -1.69E-46 |
| MS.gene05569 | MS.gene60024 | 0.806658 | 7.39E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene60024 | 0.80497 | 1.67E-49 | -1.69E-46 |
| MS.gene058710 | MS.gene60024 | 0.816506 | 5.34E-52 | -1.69E-46 |
| MS.gene059511 | MS.gene60024 | 0.822143 | 2.77E-53 | -1.69E-46 |
| MS.gene060084 | MS.gene60024 | 0.800271 | 1.56E-48 | -1.69E-46 |
| MS.gene060940 | MS.gene60024 | 0.804124 | 2.51E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60024.t1 | MTR_4g010180 | 100.000 | 211 | 0 | 0 | 1 | 211 | 1 | 211 | 6.41e-159 | 437 |
| MS.gene60024.t1 | MTR_2g103840 | 69.194 | 211 | 64 | 1 | 2 | 211 | 13 | 223 | 6.12e-106 | 304 |
| MS.gene60024.t1 | MTR_2g103850 | 66.507 | 209 | 69 | 1 | 4 | 211 | 16 | 224 | 1.22e-104 | 301 |
| MS.gene60024.t1 | MTR_8g099000 | 35.938 | 192 | 101 | 4 | 18 | 190 | 43 | 231 | 4.87e-29 | 108 |
| MS.gene60024.t1 | MTR_7g072140 | 29.947 | 187 | 125 | 5 | 11 | 194 | 27 | 210 | 4.76e-26 | 100 |
| MS.gene60024.t1 | MTR_8g023060 | 32.418 | 182 | 116 | 4 | 16 | 193 | 20 | 198 | 1.47e-25 | 98.6 |
| MS.gene60024.t1 | MTR_7g072170 | 29.032 | 186 | 126 | 5 | 11 | 193 | 27 | 209 | 1.58e-23 | 94.0 |
| MS.gene60024.t1 | MTR_7g072270 | 27.895 | 190 | 130 | 6 | 7 | 193 | 22 | 207 | 5.69e-23 | 92.4 |
| MS.gene60024.t1 | MTR_7g072120 | 28.804 | 184 | 125 | 5 | 11 | 191 | 27 | 207 | 7.97e-23 | 92.0 |
| MS.gene60024.t1 | MTR_0650s0010 | 29.665 | 209 | 130 | 7 | 1 | 196 | 1 | 205 | 9.97e-22 | 89.0 |
| MS.gene60024.t1 | MTR_4g029430 | 26.667 | 195 | 129 | 7 | 2 | 191 | 10 | 195 | 6.96e-19 | 81.3 |
| MS.gene60024.t1 | MTR_7g072250 | 25.000 | 196 | 128 | 6 | 7 | 190 | 47 | 235 | 6.95e-18 | 79.3 |
| MS.gene60024.t1 | MTR_7g071710 | 26.050 | 119 | 82 | 4 | 80 | 194 | 1 | 117 | 5.26e-13 | 63.5 |
| MS.gene60024.t1 | MTR_7g072270 | 25.850 | 147 | 103 | 5 | 7 | 150 | 22 | 165 | 8.73e-12 | 61.6 |
| MS.gene60024.t1 | MTR_8g097380 | 27.778 | 180 | 116 | 7 | 21 | 193 | 32 | 204 | 1.30e-11 | 61.6 |
| MS.gene60024.t1 | MTR_1g014150 | 25.668 | 187 | 130 | 5 | 4 | 188 | 10 | 189 | 1.34e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60024.t1 | AT3G15810 | 56.459 | 209 | 87 | 2 | 3 | 211 | 16 | 220 | 9.74e-84 | 248 |
| MS.gene60024.t1 | AT1G80120 | 62.679 | 209 | 71 | 5 | 6 | 211 | 5 | 209 | 1.20e-78 | 234 |
| MS.gene60024.t1 | AT2G38640 | 39.888 | 178 | 100 | 4 | 15 | 190 | 20 | 192 | 1.79e-30 | 111 |
| MS.gene60024.t1 | AT5G41590 | 37.297 | 185 | 102 | 7 | 18 | 190 | 37 | 219 | 4.99e-23 | 92.8 |
| MS.gene60024.t1 | AT5G01750 | 27.604 | 192 | 133 | 5 | 6 | 194 | 26 | 214 | 1.28e-20 | 86.3 |
| MS.gene60024.t1 | AT5G20640 | 30.049 | 203 | 125 | 6 | 7 | 194 | 12 | 212 | 2.10e-20 | 85.5 |
| MS.gene60024.t1 | AT2G05910 | 27.041 | 196 | 128 | 5 | 5 | 194 | 2 | 188 | 1.01e-19 | 83.2 |
| MS.gene60024.t1 | AT3G11740 | 26.816 | 179 | 124 | 4 | 20 | 194 | 16 | 191 | 2.54e-19 | 82.4 |
| MS.gene60024.t1 | AT1G53875 | 28.571 | 182 | 114 | 5 | 12 | 186 | 48 | 220 | 4.34e-17 | 77.0 |
| MS.gene60024.t1 | AT1G33840 | 24.084 | 191 | 135 | 3 | 6 | 191 | 26 | 211 | 1.24e-15 | 73.2 |
| MS.gene60024.t1 | AT1G63410 | 27.083 | 192 | 127 | 5 | 5 | 192 | 7 | 189 | 3.56e-13 | 65.9 |
| MS.gene60024.t1 | AT3G16900 | 25.397 | 189 | 114 | 8 | 7 | 191 | 15 | 180 | 1.53e-11 | 61.2 |
| MS.gene60024.t1 | AT2G14560 | 22.115 | 208 | 150 | 5 | 1 | 202 | 1 | 202 | 3.75e-11 | 60.5 |
| MS.gene60024.t1 | AT2G14560 | 22.115 | 208 | 150 | 5 | 1 | 202 | 61 | 262 | 8.35e-11 | 60.5 |
Find 51 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGAGAATTTCTTTGATAA+TGG | 0.240720 | 4.3:-86462482 | MS.gene60024:CDS |
| CTTTGCCATGGGATTGGTTT+TGG | 0.269542 | 4.3:-86462522 | MS.gene60024:CDS |
| GTGAGAATTTCTTTGATAAT+GGG | 0.336997 | 4.3:-86462481 | MS.gene60024:CDS |
| ATTCATCAATCTTCTGTAGT+AGG | 0.340424 | 4.3:+86462437 | None:intergenic |
| CTCAGCCACTAATTTCTTTG+TGG | 0.371663 | 4.3:+86462631 | None:intergenic |
| GTTTGTTGTGTATGATTGTA+AGG | 0.389745 | 4.3:-86464321 | MS.gene60024:CDS |
| TAATGCCACAAAGAAATTAG+TGG | 0.399710 | 4.3:-86462636 | MS.gene60024:CDS |
| AAAATCTTACAGCATCTTTG+TGG | 0.417016 | 4.3:+86462659 | None:intergenic |
| TCTTCCTTATCACGTGTGTT+TGG | 0.423689 | 4.3:+86464266 | None:intergenic |
| TTACAGTTCTGAAAACATCT+AGG | 0.431194 | 4.3:-86464361 | MS.gene60024:CDS |
| TGTGTCCTTTGCCATGGGAT+TGG | 0.448534 | 4.3:-86462528 | MS.gene60024:CDS |
| AAATCTTACAGCATCTTTGT+GGG | 0.461184 | 4.3:+86462660 | None:intergenic |
| TTGGTACTTGATCAGATCAA+TGG | 0.468589 | 4.3:-86462503 | MS.gene60024:CDS |
| GCAAAGGACACATCAAAATC+AGG | 0.471041 | 4.3:+86462539 | None:intergenic |
| TGGACCAAACACACGTGATA+AGG | 0.488839 | 4.3:-86464270 | MS.gene60024:CDS |
| TCCCATCGTTGATGAAGACT+TGG | 0.494963 | 4.3:+86462824 | None:intergenic |
| ATCGTGTACCTCCACTGTTA+TGG | 0.509066 | 4.3:+86462718 | None:intergenic |
| TTGGTCCATACGAGTCAAAC+CGG | 0.510635 | 4.3:+86464285 | None:intergenic |
| TTTGATGTGTCCTTTGCCAT+GGG | 0.516078 | 4.3:-86462533 | MS.gene60024:CDS |
| TCTTCTCACCTTGCGTCGAA+AGG | 0.530749 | 4.3:-86464213 | MS.gene60024:intron |
| TTCATCAATCTTCTGTAGTA+GGG | 0.533840 | 4.3:+86462438 | None:intergenic |
| GGTGTGGAGTACCTCATTGA+AGG | 0.534346 | 4.3:-86462689 | MS.gene60024:CDS |
| TCAATGAGGTACTCCACACC+TGG | 0.537802 | 4.3:+86462692 | None:intergenic |
| AGGGTGCACCGAGGTTTCAA+TGG | 0.544254 | 4.3:+86462457 | None:intergenic |
| AGTACATACCTTTCGACGCA+AGG | 0.559877 | 4.3:+86464205 | None:intergenic |
| CAACGATGGGAAGGATTCAA+AGG | 0.560825 | 4.3:-86462812 | MS.gene60024:CDS |
| ACCAAGCATAACACTAGTGG+TGG | 0.565653 | 4.3:+86462589 | None:intergenic |
| AACCAAGTCTTCATCAACGA+TGG | 0.577300 | 4.3:-86462826 | MS.gene60024:CDS |
| TTTGTTGTGTATGATTGTAA+GGG | 0.578513 | 4.3:-86464320 | MS.gene60024:CDS |
| TTCAAAGGAGAGAGAAAAGA+CGG | 0.580588 | 4.3:-86462797 | MS.gene60024:CDS |
| AGTGGCTGAGATTCGTCGTA+AGG | 0.580670 | 4.3:-86462618 | MS.gene60024:CDS |
| ACCAAGTCTTCATCAACGAT+GGG | 0.589490 | 4.3:-86462825 | MS.gene60024:CDS |
| CCCACCACTAGTGTTATGCT+TGG | 0.591048 | 4.3:-86462590 | MS.gene60024:CDS |
| GGCTGAGATTCGTCGTAAGG+TGG | 0.591532 | 4.3:-86462615 | MS.gene60024:CDS |
| GTGTGGAGTACCTCATTGAA+GGG | 0.603117 | 4.3:-86462688 | MS.gene60024:CDS |
| CTTGTTCTTATGAACACACA+TGG | 0.616126 | 4.3:-86464242 | MS.gene60024:CDS |
| TAATGGGACCATTGAAACCT+CGG | 0.618557 | 4.3:-86462465 | MS.gene60024:CDS |
| GTGGGAAACACCCTTCAATG+AGG | 0.622701 | 4.3:+86462678 | None:intergenic |
| TTTACCAAGCATAACACTAG+TGG | 0.625648 | 4.3:+86462586 | None:intergenic |
| AGTCTTCATCAACGATGGGA+AGG | 0.627932 | 4.3:-86462821 | MS.gene60024:CDS |
| AAGTACCAAAACCAATCCCA+TGG | 0.637046 | 4.3:+86462517 | None:intergenic |
| AAAGATCTTCAATAATCGCA+CGG | 0.646246 | 4.3:-86462751 | MS.gene60024:CDS |
| CAAGCATAACACTAGTGGTG+GGG | 0.647075 | 4.3:+86462591 | None:intergenic |
| CAAAACCAATCCCATGGCAA+AGG | 0.650353 | 4.3:+86462523 | None:intergenic |
| CCAAGCATAACACTAGTGGT+GGG | 0.663464 | 4.3:+86462590 | None:intergenic |
| GGTACACGATAACCCAGGTG+TGG | 0.667191 | 4.3:-86462705 | MS.gene60024:CDS |
| AAGAATGACCATAACAGTGG+AGG | 0.694861 | 4.3:-86462726 | MS.gene60024:CDS |
| GTCAAGAATGACCATAACAG+TGG | 0.699668 | 4.3:-86462729 | MS.gene60024:CDS |
| CAATGAGGTACTCCACACCT+GGG | 0.718093 | 4.3:+86462693 | None:intergenic |
| TTCTGTAGTAGGGTGCACCG+AGG | 0.725146 | 4.3:+86462448 | None:intergenic |
| GTGGAGGTACACGATAACCC+AGG | 0.734091 | 4.3:-86462710 | MS.gene60024:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATATTTATTTAAGTG+TGG | + | chr4.3:86463617-86463636 | None:intergenic | 10.0% |
| !!! | AAGATTTTTTTTATGTGAAT+CGG | + | chr4.3:86463460-86463479 | None:intergenic | 15.0% |
| !!! | TGTATTTTTTAGTTTACAAT+CGG | - | chr4.3:86463170-86463189 | MS.gene60024:intron | 15.0% |
| !!! | GGAAGATATATTTTGTTATT+GGG | - | chr4.3:86463082-86463101 | MS.gene60024:intron | 20.0% |
| ! | ATCTTGAAAAAGAGTGATTA+AGG | + | chr4.3:86463590-86463609 | None:intergenic | 25.0% |
| ! | TTGAATATACAACTGGATTT+GGG | - | chr4.3:86463234-86463253 | MS.gene60024:intron | 25.0% |
| ! | TTTCTTGTTGAATATACAAC+TGG | - | chr4.3:86463227-86463246 | MS.gene60024:intron | 25.0% |
| !! | GTGAGAATTTCTTTGATAAT+GGG | - | chr4.3:86464380-86464399 | MS.gene60024:CDS | 25.0% |
| !! | TTCTTTTTGTGTTCTGTAAT+TGG | - | chr4.3:86462697-86462716 | MS.gene60024:CDS | 25.0% |
| !! | TTTGTTGTGTATGATTGTAA+GGG | - | chr4.3:86462541-86462560 | MS.gene60024:CDS | 25.0% |
| !!! | CGGAAGATATATTTTGTTAT+TGG | - | chr4.3:86463081-86463100 | MS.gene60024:intron | 25.0% |
| AAAATCTTACAGCATCTTTG+TGG | + | chr4.3:86464205-86464224 | None:intergenic | 30.0% | |
| AAAGATCTTCAATAATCGCA+CGG | - | chr4.3:86464110-86464129 | MS.gene60024:intron | 30.0% | |
| AAATCTTACAGCATCTTTGT+GGG | + | chr4.3:86464204-86464223 | None:intergenic | 30.0% | |
| ACAACCAACAAAATCTGAAT+CGG | + | chr4.3:86462763-86462782 | None:intergenic | 30.0% | |
| ACCTAGATCTTTGGTTAAAT+CGG | - | chr4.3:86463061-86463080 | MS.gene60024:intron | 30.0% | |
| AGATTACTATCTCAAGTGAT+AGG | + | chr4.3:86463414-86463433 | None:intergenic | 30.0% | |
| ATCTCTGTCTTAACTAACTT+TGG | - | chr4.3:86462786-86462805 | MS.gene60024:CDS | 30.0% | |
| ATTAGTAACGTTGTACGAAA+AGG | + | chr4.3:86462952-86462971 | None:intergenic | 30.0% | |
| CATATTCAAACCTAGATCTT+TGG | - | chr4.3:86463052-86463071 | MS.gene60024:intron | 30.0% | |
| GAAAAAGAGTGATTAAGGTA+GGG | + | chr4.3:86463585-86463604 | None:intergenic | 30.0% | |
| GGTGAGAATTTCTTTGATAA+TGG | - | chr4.3:86464379-86464398 | MS.gene60024:CDS | 30.0% | |
| GTCCTAAGATAGTGAATATA+CGG | + | chr4.3:86463512-86463531 | None:intergenic | 30.0% | |
| GTTGAATATACAACTGGATT+TGG | - | chr4.3:86463233-86463252 | MS.gene60024:intron | 30.0% | |
| TAATGCCACAAAGAAATTAG+TGG | - | chr4.3:86464225-86464244 | MS.gene60024:CDS | 30.0% | |
| TATTCCTTTGACTGAAATCA+AGG | + | chr4.3:86463817-86463836 | None:intergenic | 30.0% | |
| TCCTAACATAGTGAAATCTT+GGG | + | chr4.3:86463489-86463508 | None:intergenic | 30.0% | |
| TGAAAAAGAGTGATTAAGGT+AGG | + | chr4.3:86463586-86463605 | None:intergenic | 30.0% | |
| ! | GATCTTTTCACATTGAAGAT+TGG | + | chr4.3:86464097-86464116 | None:intergenic | 30.0% |
| ! | TAGATGTTTTCAGAACTGTA+AGG | + | chr4.3:86462501-86462520 | None:intergenic | 30.0% |
| !! | AAAACATCTAGGTTTTTCAG+TGG | - | chr4.3:86462511-86462530 | MS.gene60024:CDS | 30.0% |
| !! | GGTATGTTTGATTTGCAATT+AGG | + | chr4.3:86463564-86463583 | None:intergenic | 30.0% |
| !! | GTTTGTTGTGTATGATTGTA+AGG | - | chr4.3:86462540-86462559 | MS.gene60024:CDS | 30.0% |
| !! | TTACAGTTCTGAAAACATCT+AGG | - | chr4.3:86462500-86462519 | MS.gene60024:CDS | 30.0% |
| AAACTGTTCACGCAACTAAA+CGG | + | chr4.3:86463534-86463553 | None:intergenic | 35.0% | |
| ATATACAACTGGATTTGGGA+TGG | - | chr4.3:86463238-86463257 | MS.gene60024:intron | 35.0% | |
| CCTAACATAGTGAAATCTTG+GGG | + | chr4.3:86463488-86463507 | None:intergenic | 35.0% | |
| CTTGTTCTTATGAACACACA+TGG | - | chr4.3:86462619-86462638 | MS.gene60024:CDS | 35.0% | |
| GACCGTATATTCACTATCTT+AGG | - | chr4.3:86463507-86463526 | MS.gene60024:intron | 35.0% | |
| GTACGAAAAGGATATCTAGT+TGG | + | chr4.3:86462940-86462959 | None:intergenic | 35.0% | |
| GTCCTAACATAGTGAAATCT+TGG | + | chr4.3:86463490-86463509 | None:intergenic | 35.0% | |
| TATGGGTTCAAATCTAGTGT+TGG | - | chr4.3:86463338-86463357 | MS.gene60024:intron | 35.0% | |
| TCCGATTTAACCAAAGATCT+AGG | + | chr4.3:86463065-86463084 | None:intergenic | 35.0% | |
| TTCAAAGGAGAGAGAAAAGA+CGG | - | chr4.3:86464064-86464083 | MS.gene60024:intron | 35.0% | |
| TTGGTACTTGATCAGATCAA+TGG | - | chr4.3:86464358-86464377 | MS.gene60024:CDS | 35.0% | |
| TTTACCAAGCATAACACTAG+TGG | + | chr4.3:86464278-86464297 | None:intergenic | 35.0% | |
| ! | TGTTTTCAGAACTGTAAGGT+TGG | + | chr4.3:86462497-86462516 | None:intergenic | 35.0% |
| !! | TGTCACACATTAGTTCTACA+CGG | + | chr4.3:86462986-86463005 | None:intergenic | 35.0% |
| AACCAAGTCTTCATCAACGA+TGG | - | chr4.3:86464035-86464054 | MS.gene60024:intron | 40.0% | |
| AAGAATGACCATAACAGTGG+AGG | - | chr4.3:86464135-86464154 | MS.gene60024:intron | 40.0% | |
| AAGTACCAAAACCAATCCCA+TGG | + | chr4.3:86464347-86464366 | None:intergenic | 40.0% | |
| ACCAAGTCTTCATCAACGAT+GGG | - | chr4.3:86464036-86464055 | MS.gene60024:intron | 40.0% | |
| CCAACTGATCGAGCAATTAT+GGG | - | chr4.3:86463321-86463340 | MS.gene60024:intron | 40.0% | |
| CCCCAAGATTTCACTATGTT+AGG | - | chr4.3:86463485-86463504 | MS.gene60024:intron | 40.0% | |
| CTCAGCCACTAATTTCTTTG+TGG | + | chr4.3:86464233-86464252 | None:intergenic | 40.0% | |
| GCAAAGGACACATCAAAATC+AGG | + | chr4.3:86464325-86464344 | None:intergenic | 40.0% | |
| GTCAAGAATGACCATAACAG+TGG | - | chr4.3:86464132-86464151 | MS.gene60024:intron | 40.0% | |
| TAATGGGACCATTGAAACCT+CGG | - | chr4.3:86464396-86464415 | MS.gene60024:CDS | 40.0% | |
| TCCAACTGATCGAGCAATTA+TGG | - | chr4.3:86463320-86463339 | MS.gene60024:intron | 40.0% | |
| TCTTCCTTATCACGTGTGTT+TGG | + | chr4.3:86462598-86462617 | None:intergenic | 40.0% | |
| TGCACCTTGATTTCAGTCAA+AGG | - | chr4.3:86463810-86463829 | MS.gene60024:intron | 40.0% | |
| TTTGATGTGTCCTTTGCCAT+GGG | - | chr4.3:86464328-86464347 | MS.gene60024:CDS | 40.0% | |
| ! | TTTTGATGTGTCCTTTGCCA+TGG | - | chr4.3:86464327-86464346 | MS.gene60024:CDS | 40.0% |
| !! | CTAGGTTTTTCAGTGGTGAT+GGG | - | chr4.3:86462518-86462537 | MS.gene60024:CDS | 40.0% |
| !! | TCTAGGTTTTTCAGTGGTGA+TGG | - | chr4.3:86462517-86462536 | MS.gene60024:CDS | 40.0% |
| !!! | CTCACCGATTCAGATTTTGT+TGG | - | chr4.3:86462756-86462775 | MS.gene60024:CDS | 40.0% |
| ACCAAGCATAACACTAGTGG+TGG | + | chr4.3:86464275-86464294 | None:intergenic | 45.0% | |
| AGTACATACCTTTCGACGCA+AGG | + | chr4.3:86462659-86462678 | None:intergenic | 45.0% | |
| AGTCTTCATCAACGATGGGA+AGG | - | chr4.3:86464040-86464059 | MS.gene60024:intron | 45.0% | |
| AGTTGCGTGAACAGTTTGAG+AGG | - | chr4.3:86463537-86463556 | MS.gene60024:intron | 45.0% | |
| ATCGTGTACCTCCACTGTTA+TGG | + | chr4.3:86464146-86464165 | None:intergenic | 45.0% | |
| CAAAACCAATCCCATGGCAA+AGG | + | chr4.3:86464341-86464360 | None:intergenic | 45.0% | |
| CAACGATGGGAAGGATTCAA+AGG | - | chr4.3:86464049-86464068 | MS.gene60024:intron | 45.0% | |
| CAAGCATAACACTAGTGGTG+GGG | + | chr4.3:86464273-86464292 | None:intergenic | 45.0% | |
| CCAAGCATAACACTAGTGGT+GGG | + | chr4.3:86464274-86464293 | None:intergenic | 45.0% | |
| CCCATAATTGCTCGATCAGT+TGG | + | chr4.3:86463324-86463343 | None:intergenic | 45.0% | |
| TGGACCAAACACACGTGATA+AGG | - | chr4.3:86462591-86462610 | MS.gene60024:CDS | 45.0% | |
| TTGGTCCATACGAGTCAAAC+CGG | + | chr4.3:86462579-86462598 | None:intergenic | 45.0% | |
| ! | GTAAGGGACAACTCGTTTTC+CGG | - | chr4.3:86462557-86462576 | MS.gene60024:CDS | 45.0% |
| ! | GTGTGGAGTACCTCATTGAA+GGG | - | chr4.3:86464173-86464192 | MS.gene60024:intron | 45.0% |
| ! | TCCCATCGTTGATGAAGACT+TGG | + | chr4.3:86464040-86464059 | None:intergenic | 45.0% |
| !! | GTTTTCCGGTTTGACTCGTA+TGG | - | chr4.3:86462571-86462590 | MS.gene60024:CDS | 45.0% |
| !!! | CTTTGCCATGGGATTGGTTT+TGG | - | chr4.3:86464339-86464358 | MS.gene60024:CDS | 45.0% |
| !! | AAAAAAATATTATACATATT+TGG | - | chr4.3:86462893-86462912 | MS.gene60024:intron | 5.0% |
| !! | AAATTAAATAAATATGTTAT+TGG | + | chr4.3:86463210-86463229 | None:intergenic | 5.0% |
| AGTGGCTGAGATTCGTCGTA+AGG | - | chr4.3:86464243-86464262 | MS.gene60024:CDS | 50.0% | |
| CCCACCACTAGTGTTATGCT+TGG | - | chr4.3:86464271-86464290 | MS.gene60024:CDS | 50.0% | |
| GTGGGAAACACCCTTCAATG+AGG | + | chr4.3:86464186-86464205 | None:intergenic | 50.0% | |
| TCTTCTCACCTTGCGTCGAA+AGG | - | chr4.3:86462648-86462667 | MS.gene60024:CDS | 50.0% | |
| TGTGTCCTTTGCCATGGGAT+TGG | - | chr4.3:86464333-86464352 | MS.gene60024:CDS | 50.0% | |
| ! | CAATGAGGTACTCCACACCT+GGG | + | chr4.3:86464171-86464190 | None:intergenic | 50.0% |
| ! | GGTGTGGAGTACCTCATTGA+AGG | - | chr4.3:86464172-86464191 | MS.gene60024:intron | 50.0% |
| ! | TCAATGAGGTACTCCACACC+TGG | + | chr4.3:86464172-86464191 | None:intergenic | 50.0% |
| AGGGTGCACCGAGGTTTCAA+TGG | + | chr4.3:86464407-86464426 | None:intergenic | 55.0% | |
| GGCTGAGATTCGTCGTAAGG+TGG | - | chr4.3:86464246-86464265 | MS.gene60024:CDS | 55.0% | |
| GGTACACGATAACCCAGGTG+TGG | - | chr4.3:86464156-86464175 | MS.gene60024:intron | 55.0% | |
| TTCTGTAGTAGGGTGCACCG+AGG | + | chr4.3:86464416-86464435 | None:intergenic | 55.0% | |
| ! | GTGGAGGTACACGATAACCC+AGG | - | chr4.3:86464151-86464170 | MS.gene60024:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 86462442 | 86464441 | 86462442 | ID=MS.gene60024 |
| chr4.3 | mRNA | 86462442 | 86464441 | 86462442 | ID=MS.gene60024.t1;Parent=MS.gene60024 |
| chr4.3 | exon | 86464214 | 86464441 | 86464214 | ID=MS.gene60024.t1.exon1;Parent=MS.gene60024.t1 |
| chr4.3 | CDS | 86464214 | 86464441 | 86464214 | ID=cds.MS.gene60024.t1;Parent=MS.gene60024.t1 |
| chr4.3 | exon | 86462442 | 86462849 | 86462442 | ID=MS.gene60024.t1.exon2;Parent=MS.gene60024.t1 |
| chr4.3 | CDS | 86462442 | 86462849 | 86462442 | ID=cds.MS.gene60024.t1;Parent=MS.gene60024.t1 |
| Gene Sequence |
| Protein sequence |
