Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60080.t1 | XP_003602146.1 | 94.3 | 333 | 19 | 0 | 1 | 333 | 34 | 366 | 6.10E-184 | 653.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60080.t1 | Q84VY3 | 71.2 | 337 | 93 | 2 | 1 | 333 | 55 | 391 | 6.5e-142 | 505.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60080.t1 | G7J653 | 94.3 | 333 | 19 | 0 | 1 | 333 | 34 | 366 | 4.4e-184 | 653.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene60080 | 0.813823 | 2.11E-51 | -1.69E-46 |
| MS.gene050298 | MS.gene60080 | 0.852635 | 4.06E-61 | -1.69E-46 |
| MS.gene050563 | MS.gene60080 | 0.821613 | 3.68E-53 | -1.69E-46 |
| MS.gene050584 | MS.gene60080 | 0.810019 | 1.42E-50 | -1.69E-46 |
| MS.gene050585 | MS.gene60080 | 0.805412 | 1.35E-49 | -1.69E-46 |
| MS.gene050587 | MS.gene60080 | 0.83702 | 6.65E-57 | -1.69E-46 |
| MS.gene052142 | MS.gene60080 | 0.84136 | 4.98E-58 | -1.69E-46 |
| MS.gene053383 | MS.gene60080 | 0.837751 | 4.32E-57 | -1.69E-46 |
| MS.gene05456 | MS.gene60080 | 0.845919 | 3.01E-59 | -1.69E-46 |
| MS.gene059768 | MS.gene60080 | 0.812665 | 3.78E-51 | -1.69E-46 |
| MS.gene060691 | MS.gene60080 | 0.849814 | 2.54E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60080.t1 | MTR_3g090100 | 94.294 | 333 | 19 | 0 | 1 | 333 | 34 | 366 | 0.0 | 662 |
| MS.gene60080.t1 | MTR_3g090020 | 90.991 | 333 | 30 | 0 | 1 | 333 | 34 | 366 | 0.0 | 636 |
| MS.gene60080.t1 | MTR_3g089025 | 82.583 | 333 | 58 | 0 | 1 | 333 | 37 | 369 | 0.0 | 579 |
| MS.gene60080.t1 | MTR_3g090010 | 79.758 | 331 | 67 | 0 | 1 | 331 | 38 | 368 | 0.0 | 562 |
| MS.gene60080.t1 | MTR_1g029150 | 75.749 | 334 | 78 | 1 | 1 | 331 | 55 | 388 | 0.0 | 542 |
| MS.gene60080.t1 | MTR_5g024130 | 66.867 | 332 | 107 | 2 | 1 | 331 | 62 | 391 | 3.83e-169 | 476 |
| MS.gene60080.t1 | MTR_4g087440 | 66.867 | 332 | 107 | 2 | 1 | 331 | 62 | 391 | 5.49e-169 | 476 |
| MS.gene60080.t1 | MTR_3g090110 | 50.847 | 118 | 35 | 1 | 177 | 294 | 1 | 95 | 1.10e-32 | 117 |
| MS.gene60080.t1 | MTR_3g089980 | 59.184 | 98 | 27 | 1 | 197 | 294 | 6 | 90 | 2.32e-29 | 108 |
| MS.gene60080.t1 | MTR_3g089973 | 40.541 | 148 | 44 | 3 | 177 | 324 | 1 | 104 | 2.59e-20 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60080.t1 | AT1G43800 | 70.920 | 337 | 94 | 1 | 1 | 333 | 55 | 391 | 0.0 | 512 |
| MS.gene60080.t1 | AT3G02630 | 65.766 | 333 | 110 | 2 | 1 | 331 | 64 | 394 | 2.37e-166 | 469 |
| MS.gene60080.t1 | AT5G16240 | 65.165 | 333 | 112 | 2 | 1 | 331 | 62 | 392 | 2.66e-164 | 464 |
| MS.gene60080.t1 | AT2G43710 | 63.473 | 334 | 119 | 2 | 1 | 333 | 70 | 401 | 2.97e-160 | 454 |
| MS.gene60080.t1 | AT2G43710 | 63.473 | 334 | 119 | 2 | 1 | 333 | 70 | 401 | 3.65e-160 | 453 |
| MS.gene60080.t1 | AT3G02610 | 62.832 | 339 | 119 | 3 | 1 | 333 | 74 | 411 | 4.89e-160 | 454 |
| MS.gene60080.t1 | AT3G02610 | 62.832 | 339 | 119 | 3 | 1 | 333 | 76 | 413 | 5.41e-160 | 453 |
| MS.gene60080.t1 | AT5G16230 | 62.575 | 334 | 120 | 3 | 4 | 333 | 69 | 401 | 2.83e-158 | 449 |
| MS.gene60080.t1 | AT3G02620 | 61.357 | 339 | 124 | 3 | 1 | 333 | 69 | 406 | 7.10e-157 | 445 |
| MS.gene60080.t1 | AT3G02620 | 61.357 | 339 | 124 | 3 | 1 | 333 | 66 | 403 | 7.30e-157 | 445 |
| MS.gene60080.t1 | AT5G16230 | 62.270 | 326 | 118 | 3 | 12 | 333 | 1 | 325 | 2.07e-154 | 436 |
| MS.gene60080.t1 | AT3G02620 | 61.585 | 328 | 119 | 3 | 12 | 333 | 1 | 327 | 1.19e-152 | 432 |
Find 82 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATGATTATCTTGTGGTTT+TGG | 0.263671 | 6.1:+34756391 | MS.gene60080:CDS |
| AATCTTGCGATGCATCATTT+TGG | 0.286538 | 6.1:-34757524 | None:intergenic |
| CCAACTTGTTTATCCATGTT+TGG | 0.336928 | 6.1:-34756451 | None:intergenic |
| GTCTCACACCATGGGCTATA+TGG | 0.350432 | 6.1:+34756501 | MS.gene60080:CDS |
| CTCTCAGGGCCTGCACTTGA+TGG | 0.353548 | 6.1:-34756349 | None:intergenic |
| TGCACCTAGATTAAGAAAAC+TGG | 0.364017 | 6.1:+34757747 | MS.gene60080:CDS |
| GGGCTATATGGTCACGCTCT+TGG | 0.370720 | 6.1:+34756513 | MS.gene60080:CDS |
| TGCCAGCTCCAATCAAATAT+TGG | 0.374430 | 6.1:-34756625 | None:intergenic |
| TGTTCAAATCACTAGAGAAA+TGG | 0.378630 | 6.1:+34756228 | MS.gene60080:CDS |
| CTTGATTAGACGATGGAGAT+TGG | 0.392791 | 6.1:+34757666 | MS.gene60080:CDS |
| GTTCAAATCACTAGAGAAAT+GGG | 0.399384 | 6.1:+34756229 | MS.gene60080:CDS |
| AAGACTATCCAATATTTGAT+TGG | 0.400329 | 6.1:+34756617 | MS.gene60080:CDS |
| GCTCAGCCGTTCGATCTCTC+AGG | 0.408301 | 6.1:-34756364 | None:intergenic |
| GGCTGCCAGCATTCCTCCAC+AGG | 0.422913 | 6.1:-34756281 | None:intergenic |
| GTGTACACAAAACCCATGTA+TGG | 0.438769 | 6.1:-34757310 | None:intergenic |
| AGATCAATCACAAATTCTCT+TGG | 0.444851 | 6.1:+34757797 | MS.gene60080:CDS |
| GATGGAGTTGGCGACGAGAC+TGG | 0.447459 | 6.1:+34756473 | MS.gene60080:CDS |
| TGGAGATTGGAGAAGATTGA+GGG | 0.448075 | 6.1:+34757679 | MS.gene60080:CDS |
| TCTGCAGTGGCACAACGTAT+TGG | 0.460018 | 6.1:+34757604 | MS.gene60080:CDS |
| ATCCAATATTTGATTGGAGC+TGG | 0.463614 | 6.1:+34756623 | MS.gene60080:CDS |
| AAACTGGAAGAGCGTCTTGA+TGG | 0.465202 | 6.1:+34757763 | MS.gene60080:CDS |
| TACCGAAAACAACCCATACA+TGG | 0.467155 | 6.1:+34757297 | MS.gene60080:CDS |
| AGTTGATCCCACCGAGGCTA+TGG | 0.482931 | 6.1:+34757492 | MS.gene60080:CDS |
| ATGGAGATTGGAGAAGATTG+AGG | 0.484391 | 6.1:+34757678 | MS.gene60080:CDS |
| GGCTATGGCCACCATAGCCT+CGG | 0.489653 | 6.1:-34757503 | None:intergenic |
| TTCACAAAGTGTGTTGCCAT+TGG | 0.492726 | 6.1:+34756253 | MS.gene60080:CDS |
| AAAACCACAAGATAATCATC+TGG | 0.498146 | 6.1:-34756389 | None:intergenic |
| TTTATCCATGTTTGGTACGT+AGG | 0.501588 | 6.1:-34756443 | None:intergenic |
| TCTCTTTAGCCAACCTACCT+AGG | 0.503420 | 6.1:-34757372 | None:intergenic |
| CTCTCACTTGCACGCATATG+CGG | 0.504929 | 6.1:+34757403 | MS.gene60080:CDS |
| GTACGTAGGCAATGCTTCCT+CGG | 0.510676 | 6.1:-34756429 | None:intergenic |
| TCGGAAGGTAGTGATGAGTC+TGG | 0.523237 | 6.1:-34756317 | None:intergenic |
| TCTCACTTGCACGCATATGC+GGG | 0.524777 | 6.1:+34757404 | MS.gene60080:CDS |
| GCTTCCAGATGATTATCTTG+TGG | 0.527931 | 6.1:+34756385 | MS.gene60080:CDS |
| CCCGCTCACTTGATGCATGA+TGG | 0.529067 | 6.1:+34757553 | MS.gene60080:CDS |
| AACTGGAAGAGCGTCTTGAT+GGG | 0.529372 | 6.1:+34757764 | MS.gene60080:CDS |
| CCAAACATGGATAAACAAGT+TGG | 0.530351 | 6.1:+34756451 | MS.gene60080:CDS |
| AAAACTTATCTATATCTCTC+CGG | 0.537755 | 6.1:+34756569 | MS.gene60080:CDS |
| CATTGCCTACGTACCAAACA+TGG | 0.538689 | 6.1:+34756438 | MS.gene60080:CDS |
| ATATTTGATTGGAGCTGGCA+TGG | 0.538813 | 6.1:+34756628 | MS.gene60080:CDS |
| AAATGTGGCTCGCTCTTGAA+AGG | 0.540932 | 6.1:-34757335 | None:intergenic |
| TCAAACCTGTGGAGGAATGC+TGG | 0.543810 | 6.1:+34756276 | MS.gene60080:CDS |
| CCATCATGCATCAAGTGAGC+GGG | 0.549039 | 6.1:-34757553 | None:intergenic |
| TCCTCCACAGGTTTGACCAA+TGG | 0.550904 | 6.1:-34756269 | None:intergenic |
| ATAAACAAGTTGGATGGAGT+TGG | 0.559959 | 6.1:+34756461 | MS.gene60080:CDS |
| CGCATATGCGTGCAAGTGAG+AGG | 0.561577 | 6.1:-34757402 | None:intergenic |
| TGAGTTCATCCATCAAGTGC+AGG | 0.567672 | 6.1:+34756340 | MS.gene60080:CDS |
| TATGGCCACCATAGCCTCGG+TGG | 0.570103 | 6.1:-34757500 | None:intergenic |
| ACATGGATAAACAAGTTGGA+TGG | 0.572710 | 6.1:+34756455 | MS.gene60080:CDS |
| ATTGAGGGTTTGACAAGCGA+AGG | 0.578019 | 6.1:+34757694 | MS.gene60080:CDS |
| CTCAGCCGTTCGATCTCTCA+GGG | 0.579284 | 6.1:-34756363 | None:intergenic |
| TTGTTCATGGTGTAGGATGT+GGG | 0.582554 | 6.1:+34757274 | MS.gene60080:intron |
| TGTCACACGGCAACCTAGGT+AGG | 0.586115 | 6.1:+34757359 | MS.gene60080:CDS |
| CATGCACATATCAACTCGAC+CGG | 0.587049 | 6.1:-34756588 | None:intergenic |
| TGATCCCACCGAGGCTATGG+TGG | 0.588287 | 6.1:+34757495 | MS.gene60080:CDS |
| TGGTTCAAGTCTCACACCAT+GGG | 0.600203 | 6.1:+34756493 | MS.gene60080:CDS |
| TTTGTGTCACACGGCAACCT+AGG | 0.600519 | 6.1:+34757355 | MS.gene60080:CDS |
| TAGAGTTCTTGATTAGACGA+TGG | 0.605110 | 6.1:+34757659 | MS.gene60080:CDS |
| TCCATCATGCATCAAGTGAG+CGG | 0.608659 | 6.1:-34757554 | None:intergenic |
| CTGGTTCAAGTCTCACACCA+TGG | 0.612232 | 6.1:+34756492 | MS.gene60080:CDS |
| GCAGGCCCTGAGAGATCGAA+CGG | 0.616767 | 6.1:+34756358 | MS.gene60080:CDS |
| CGAGCCACATTTGTGTCACA+CGG | 0.618843 | 6.1:+34757346 | MS.gene60080:CDS |
| ATGGCCACCATAGCCTCGGT+GGG | 0.619166 | 6.1:-34757499 | None:intergenic |
| TGCAATTATAAAACTTCACA+CGG | 0.621217 | 6.1:-34757839 | None:intergenic |
| GAGCGTGACCATATAGCCCA+TGG | 0.625365 | 6.1:-34756509 | None:intergenic |
| ACCGAAAACAACCCATACAT+GGG | 0.628237 | 6.1:+34757298 | MS.gene60080:CDS |
| GTTGCCATTGGTCAAACCTG+TGG | 0.631709 | 6.1:+34756265 | MS.gene60080:CDS |
| ACACGGCAACCTAGGTAGGT+TGG | 0.632318 | 6.1:+34757363 | MS.gene60080:CDS |
| GGTAGGTTGGCTAAAGAGAG+AGG | 0.635441 | 6.1:+34757376 | MS.gene60080:CDS |
| TGTACACAAAACCCATGTAT+GGG | 0.636404 | 6.1:-34757309 | None:intergenic |
| GAATGCATATGTGAGGATTG+TGG | 0.642224 | 6.1:+34757456 | MS.gene60080:CDS |
| GAGTCTGGCAACAAATTATG+TGG | 0.650290 | 6.1:-34756302 | None:intergenic |
| GCCATTGGTCAAACCTGTGG+AGG | 0.654988 | 6.1:+34756268 | MS.gene60080:CDS |
| CACTTGATGGATGAACTCAT+CGG | 0.663477 | 6.1:-34756336 | None:intergenic |
| GTCACGAGAATGCATATGTG+AGG | 0.664895 | 6.1:+34757449 | MS.gene60080:CDS |
| ACCGCTGAAGAAAATAGACA+TGG | 0.664992 | 6.1:+34756536 | MS.gene60080:CDS |
| CTCGTGACGCTTCTCATCAG+CGG | 0.665409 | 6.1:-34757434 | None:intergenic |
| TGATGGATGAACTCATCGGA+AGG | 0.673548 | 6.1:-34756332 | None:intergenic |
| CATGCACAAGAGTTTGTGTG+TGG | 0.720139 | 6.1:+34757721 | MS.gene60080:CDS |
| GTTGCCGTGTGACACAAATG+TGG | 0.723814 | 6.1:-34757350 | None:intergenic |
| GGTCGGTGGCATGATCACCG+AGG | 0.744020 | 6.1:+34756412 | MS.gene60080:CDS |
| TCTAGAAGTTGATCCCACCG+AGG | 0.786898 | 6.1:+34757486 | MS.gene60080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATGAAAAATGTTATT+TGG | - | chr6.1:34757248-34757267 | None:intergenic | 10.0% |
| !! | ATAAATTAATTGATTGTTCA+TGG | + | chr6.1:34757261-34757280 | MS.gene60080:intron | 15.0% |
| !! | TAATAAATCGTATTTGTGTA+TGG | - | chr6.1:34756927-34756946 | None:intergenic | 20.0% |
| ! | AAAACTTATCTATATCTCTC+CGG | + | chr6.1:34756569-34756588 | MS.gene60080:CDS | 25.0% |
| ! | AAGACTATCCAATATTTGAT+TGG | + | chr6.1:34756617-34756636 | MS.gene60080:CDS | 25.0% |
| ! | ACAATGCATAATATATGCAA+AGG | + | chr6.1:34757056-34757075 | MS.gene60080:intron | 25.0% |
| ! | GAACGACTATTAAAAAATAG+TGG | - | chr6.1:34757120-34757139 | None:intergenic | 25.0% |
| !!! | ATTTGTTATTCTCGTTAGTT+TGG | - | chr6.1:34756829-34756848 | None:intergenic | 25.0% |
| !!! | TTCTATTTCTTTTTCTTTCG+AGG | + | chr6.1:34757209-34757228 | MS.gene60080:intron | 25.0% |
| AAAACCACAAGATAATCATC+TGG | - | chr6.1:34756392-34756411 | None:intergenic | 30.0% | |
| ACATATACATGCACACAATA+TGG | + | chr6.1:34756682-34756701 | MS.gene60080:intron | 30.0% | |
| AGATCAATCACAAATTCTCT+TGG | + | chr6.1:34757797-34757816 | MS.gene60080:CDS | 30.0% | |
| AGCTCACAAAGATAAAATAG+AGG | - | chr6.1:34757019-34757038 | None:intergenic | 30.0% | |
| ATATGTATAGATGACAGTGA+CGG | - | chr6.1:34756668-34756687 | None:intergenic | 30.0% | |
| GTTCAAATCACTAGAGAAAT+GGG | + | chr6.1:34756229-34756248 | MS.gene60080:CDS | 30.0% | |
| TAATTGATTGTTCATGGTGT+AGG | + | chr6.1:34757267-34757286 | MS.gene60080:intron | 30.0% | |
| TGTTCAAATCACTAGAGAAA+TGG | + | chr6.1:34756228-34756247 | MS.gene60080:CDS | 30.0% | |
| ! | AGATGATTATCTTGTGGTTT+TGG | + | chr6.1:34756391-34756410 | MS.gene60080:CDS | 30.0% |
| ! | TCTTCCAGTTTTCTTAATCT+AGG | - | chr6.1:34757754-34757773 | None:intergenic | 30.0% |
| ! | TTGAACACTTCTTTCTTTTC+AGG | - | chr6.1:34756215-34756234 | None:intergenic | 30.0% |
| !!! | ATAGTGGTGTCTTTTTTTTG+CGG | - | chr6.1:34757104-34757123 | None:intergenic | 30.0% |
| ATCCAATATTTGATTGGAGC+TGG | + | chr6.1:34756623-34756642 | MS.gene60080:CDS | 35.0% | |
| CATAATATATGCAAAGGTCC+GGG | + | chr6.1:34757062-34757081 | MS.gene60080:intron | 35.0% | |
| CCAAACATGGATAAACAAGT+TGG | + | chr6.1:34756451-34756470 | MS.gene60080:CDS | 35.0% | |
| GCATAATATATGCAAAGGTC+CGG | + | chr6.1:34757061-34757080 | MS.gene60080:intron | 35.0% | |
| TAGAGTTCTTGATTAGACGA+TGG | + | chr6.1:34757659-34757678 | MS.gene60080:CDS | 35.0% | |
| TGCACCTAGATTAAGAAAAC+TGG | + | chr6.1:34757747-34757766 | MS.gene60080:CDS | 35.0% | |
| TGTACACAAAACCCATGTAT+GGG | - | chr6.1:34757312-34757331 | None:intergenic | 35.0% | |
| TTTATCCATGTTTGGTACGT+AGG | - | chr6.1:34756446-34756465 | None:intergenic | 35.0% | |
| ! | AATCTTGCGATGCATCATTT+TGG | - | chr6.1:34757527-34757546 | None:intergenic | 35.0% |
| ! | ACATGGATAAACAAGTTGGA+TGG | + | chr6.1:34756455-34756474 | MS.gene60080:CDS | 35.0% |
| ! | ATAAACAAGTTGGATGGAGT+TGG | + | chr6.1:34756461-34756480 | MS.gene60080:CDS | 35.0% |
| ! | CCAACTTGTTTATCCATGTT+TGG | - | chr6.1:34756454-34756473 | None:intergenic | 35.0% |
| ! | CGTTAGTTTGGCAAATGTAT+GGG | - | chr6.1:34756817-34756836 | None:intergenic | 35.0% |
| ! | TCCATGTCTATTTTCTTCAG+CGG | - | chr6.1:34756540-34756559 | None:intergenic | 35.0% |
| ! | TCGTTAGTTTGGCAAATGTA+TGG | - | chr6.1:34756818-34756837 | None:intergenic | 35.0% |
| !!! | GATTATCTTGTGGTTTTGGT+CGG | + | chr6.1:34756395-34756414 | MS.gene60080:CDS | 35.0% |
| ACCGAAAACAACCCATACAT+GGG | + | chr6.1:34757298-34757317 | MS.gene60080:CDS | 40.0% | |
| ACCGCTGAAGAAAATAGACA+TGG | + | chr6.1:34756536-34756555 | MS.gene60080:CDS | 40.0% | |
| ATATTTGATTGGAGCTGGCA+TGG | + | chr6.1:34756628-34756647 | MS.gene60080:CDS | 40.0% | |
| ATGGAGATTGGAGAAGATTG+AGG | + | chr6.1:34757678-34757697 | MS.gene60080:CDS | 40.0% | |
| ATTGTTCATGGTGTAGGATG+TGG | + | chr6.1:34757273-34757292 | MS.gene60080:intron | 40.0% | |
| CTGCAGAAAAATGATCGAAG+AGG | - | chr6.1:34757591-34757610 | None:intergenic | 40.0% | |
| CTTGATTAGACGATGGAGAT+TGG | + | chr6.1:34757666-34757685 | MS.gene60080:CDS | 40.0% | |
| CTTTGTGAGCTTAACTCAGT+TGG | + | chr6.1:34757028-34757047 | MS.gene60080:intron | 40.0% | |
| GAATGCATATGTGAGGATTG+TGG | + | chr6.1:34757456-34757475 | MS.gene60080:CDS | 40.0% | |
| GAGTCTGGCAACAAATTATG+TGG | - | chr6.1:34756305-34756324 | None:intergenic | 40.0% | |
| GCTTCCAGATGATTATCTTG+TGG | + | chr6.1:34756385-34756404 | MS.gene60080:CDS | 40.0% | |
| GTGTACACAAAACCCATGTA+TGG | - | chr6.1:34757313-34757332 | None:intergenic | 40.0% | |
| TACCGAAAACAACCCATACA+TGG | + | chr6.1:34757297-34757316 | MS.gene60080:CDS | 40.0% | |
| TGCCAGCTCCAATCAAATAT+TGG | - | chr6.1:34756628-34756647 | None:intergenic | 40.0% | |
| TGGAGATTGGAGAAGATTGA+GGG | + | chr6.1:34757679-34757698 | MS.gene60080:CDS | 40.0% | |
| TTCACAAAGTGTGTTGCCAT+TGG | + | chr6.1:34756253-34756272 | MS.gene60080:CDS | 40.0% | |
| TTGTTCATGGTGTAGGATGT+GGG | + | chr6.1:34757274-34757293 | MS.gene60080:intron | 40.0% | |
| ! | AAAAATGATCGAAGAGGCGT+GGG | - | chr6.1:34757585-34757604 | None:intergenic | 40.0% |
| ! | CACTTGATGGATGAACTCAT+CGG | - | chr6.1:34756339-34756358 | None:intergenic | 40.0% |
| !! | ACCCATGTATGGGTTGTTTT+CGG | - | chr6.1:34757302-34757321 | None:intergenic | 40.0% |
| !! | CTTCGATCATTTTTCTGCAG+TGG | + | chr6.1:34757591-34757610 | MS.gene60080:CDS | 40.0% |
| !!! | TGTCTTTTTTTTGCGGTGGT+CGG | - | chr6.1:34757097-34757116 | None:intergenic | 40.0% |
| AAATGTGGCTCGCTCTTGAA+AGG | - | chr6.1:34757338-34757357 | None:intergenic | 45.0% | |
| ATTGAGGGTTTGACAAGCGA+AGG | + | chr6.1:34757694-34757713 | MS.gene60080:CDS | 45.0% | |
| CATGCACAAGAGTTTGTGTG+TGG | + | chr6.1:34757721-34757740 | MS.gene60080:CDS | 45.0% | |
| CATGCACATATCAACTCGAC+CGG | - | chr6.1:34756591-34756610 | None:intergenic | 45.0% | |
| CATTGCCTACGTACCAAACA+TGG | + | chr6.1:34756438-34756457 | MS.gene60080:CDS | 45.0% | |
| GAAAAATGATCGAAGAGGCG+TGG | - | chr6.1:34757586-34757605 | None:intergenic | 45.0% | |
| GTCACGAGAATGCATATGTG+AGG | + | chr6.1:34757449-34757468 | MS.gene60080:CDS | 45.0% | |
| TCCATCATGCATCAAGTGAG+CGG | - | chr6.1:34757557-34757576 | None:intergenic | 45.0% | |
| TCTCTTTAGCCAACCTACCT+AGG | - | chr6.1:34757375-34757394 | None:intergenic | 45.0% | |
| TGAGTTCATCCATCAAGTGC+AGG | + | chr6.1:34756340-34756359 | MS.gene60080:CDS | 45.0% | |
| TGCACTCGTAACACGTATGT+GGG | - | chr6.1:34756895-34756914 | None:intergenic | 45.0% | |
| TGGTTCAAGTCTCACACCAT+GGG | + | chr6.1:34756493-34756512 | MS.gene60080:CDS | 45.0% | |
| ! | TGATGGATGAACTCATCGGA+AGG | - | chr6.1:34756335-34756354 | None:intergenic | 45.0% |
| !! | AAACTGGAAGAGCGTCTTGA+TGG | + | chr6.1:34757763-34757782 | MS.gene60080:CDS | 45.0% |
| !! | AACTGGAAGAGCGTCTTGAT+GGG | + | chr6.1:34757764-34757783 | MS.gene60080:CDS | 45.0% |
| !!! | GCGATGCATCATTTTGGCTA+TGG | - | chr6.1:34757521-34757540 | None:intergenic | 45.0% |
| !!! | GTCTTTTTTTTGCGGTGGTC+GGG | - | chr6.1:34757096-34757115 | None:intergenic | 45.0% |
| !!! | GTGGTGTCTTTTTTTTGCGG+TGG | - | chr6.1:34757101-34757120 | None:intergenic | 45.0% |
| !!! | TATCTTGTGGTTTTGGTCGG+TGG | + | chr6.1:34756398-34756417 | MS.gene60080:CDS | 45.0% |
| CACATACGTGTTACGAGTGC+AGG | + | chr6.1:34756894-34756913 | MS.gene60080:intron | 50.0% | |
| CCATCATGCATCAAGTGAGC+GGG | - | chr6.1:34757556-34757575 | None:intergenic | 50.0% | |
| CGAGCCACATTTGTGTCACA+CGG | + | chr6.1:34757346-34757365 | MS.gene60080:CDS | 50.0% | |
| CTCTCACTTGCACGCATATG+CGG | + | chr6.1:34757403-34757422 | MS.gene60080:CDS | 50.0% | |
| CTGCACTCGTAACACGTATG+TGG | - | chr6.1:34756896-34756915 | None:intergenic | 50.0% | |
| CTGGTTCAAGTCTCACACCA+TGG | + | chr6.1:34756492-34756511 | MS.gene60080:CDS | 50.0% | |
| GTACGTAGGCAATGCTTCCT+CGG | - | chr6.1:34756432-34756451 | None:intergenic | 50.0% | |
| GTTGCCATTGGTCAAACCTG+TGG | + | chr6.1:34756265-34756284 | MS.gene60080:CDS | 50.0% | |
| GTTGCCGTGTGACACAAATG+TGG | - | chr6.1:34757353-34757372 | None:intergenic | 50.0% | |
| TCAAACCTGTGGAGGAATGC+TGG | + | chr6.1:34756276-34756295 | MS.gene60080:CDS | 50.0% | |
| TCCTCCACAGGTTTGACCAA+TGG | - | chr6.1:34756272-34756291 | None:intergenic | 50.0% | |
| TCGGAAGGTAGTGATGAGTC+TGG | - | chr6.1:34756320-34756339 | None:intergenic | 50.0% | |
| TCTCACTTGCACGCATATGC+GGG | + | chr6.1:34757404-34757423 | MS.gene60080:CDS | 50.0% | |
| TCTGCAGTGGCACAACGTAT+TGG | + | chr6.1:34757604-34757623 | MS.gene60080:CDS | 50.0% | |
| TTTGTGTCACACGGCAACCT+AGG | + | chr6.1:34757355-34757374 | MS.gene60080:CDS | 50.0% | |
| ! | GGTAGGTTGGCTAAAGAGAG+AGG | + | chr6.1:34757376-34757395 | MS.gene60080:CDS | 50.0% |
| ! | GTCTCACACCATGGGCTATA+TGG | + | chr6.1:34756501-34756520 | MS.gene60080:CDS | 50.0% |
| ! | TCTAGAAGTTGATCCCACCG+AGG | + | chr6.1:34757486-34757505 | MS.gene60080:CDS | 50.0% |
| ACACGGCAACCTAGGTAGGT+TGG | + | chr6.1:34757363-34757382 | MS.gene60080:CDS | 55.0% | |
| AGTTGATCCCACCGAGGCTA+TGG | + | chr6.1:34757492-34757511 | MS.gene60080:CDS | 55.0% | |
| CCCGCTCACTTGATGCATGA+TGG | + | chr6.1:34757553-34757572 | MS.gene60080:CDS | 55.0% | |
| CGCATATGCGTGCAAGTGAG+AGG | - | chr6.1:34757405-34757424 | None:intergenic | 55.0% | |
| CTCAGCCGTTCGATCTCTCA+GGG | - | chr6.1:34756366-34756385 | None:intergenic | 55.0% | |
| CTCGTGACGCTTCTCATCAG+CGG | - | chr6.1:34757437-34757456 | None:intergenic | 55.0% | |
| GAGCGTGACCATATAGCCCA+TGG | - | chr6.1:34756512-34756531 | None:intergenic | 55.0% | |
| GCCATTGGTCAAACCTGTGG+AGG | + | chr6.1:34756268-34756287 | MS.gene60080:CDS | 55.0% | |
| GGGCTATATGGTCACGCTCT+TGG | + | chr6.1:34756513-34756532 | MS.gene60080:CDS | 55.0% | |
| GGTGGTCGGGATTTGAATCC+CGG | - | chr6.1:34757083-34757102 | None:intergenic | 55.0% | |
| TGTCACACGGCAACCTAGGT+AGG | + | chr6.1:34757359-34757378 | MS.gene60080:CDS | 55.0% | |
| ATGGCCACCATAGCCTCGGT+GGG | - | chr6.1:34757502-34757521 | None:intergenic | 60.0% | |
| CTCTCAGGGCCTGCACTTGA+TGG | - | chr6.1:34756352-34756371 | None:intergenic | 60.0% | |
| GATGGAGTTGGCGACGAGAC+TGG | + | chr6.1:34756473-34756492 | MS.gene60080:CDS | 60.0% | |
| GCAGGCCCTGAGAGATCGAA+CGG | + | chr6.1:34756358-34756377 | MS.gene60080:CDS | 60.0% | |
| GCTCAGCCGTTCGATCTCTC+AGG | - | chr6.1:34756367-34756386 | None:intergenic | 60.0% | |
| GGCTATGGCCACCATAGCCT+CGG | - | chr6.1:34757506-34757525 | None:intergenic | 60.0% | |
| TATGGCCACCATAGCCTCGG+TGG | - | chr6.1:34757503-34757522 | None:intergenic | 60.0% | |
| TGATCCCACCGAGGCTATGG+TGG | + | chr6.1:34757495-34757514 | MS.gene60080:CDS | 60.0% | |
| GGCTGCCAGCATTCCTCCAC+AGG | - | chr6.1:34756284-34756303 | None:intergenic | 65.0% | |
| GGTCGGTGGCATGATCACCG+AGG | + | chr6.1:34756412-34756431 | MS.gene60080:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 34756206 | 34757846 | 34756206 | ID=MS.gene60080 |
| chr6.1 | mRNA | 34756206 | 34757846 | 34756206 | ID=MS.gene60080.t1;Parent=MS.gene60080 |
| chr6.1 | exon | 34756206 | 34756649 | 34756206 | ID=MS.gene60080.t1.exon1;Parent=MS.gene60080.t1 |
| chr6.1 | CDS | 34756206 | 34756649 | 34756206 | ID=cds.MS.gene60080.t1;Parent=MS.gene60080.t1 |
| chr6.1 | exon | 34757289 | 34757846 | 34757289 | ID=MS.gene60080.t1.exon2;Parent=MS.gene60080.t1 |
| chr6.1 | CDS | 34757289 | 34757846 | 34757289 | ID=cds.MS.gene60080.t1;Parent=MS.gene60080.t1 |
| Gene Sequence |
| Protein sequence |
