AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60803

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60803.t1 MTR_1g096310 91.129 372 4 1 1 343 1 372 0.0 686
MS.gene60803.t1 MTR_7g011900 58.713 373 121 4 1 343 1 370 7.32e-153 434
MS.gene60803.t1 MTR_7g012040 58.082 365 121 3 8 343 7 368 3.27e-148 422
MS.gene60803.t1 MTR_7g012020 56.011 366 128 4 8 343 7 369 5.67e-143 409
MS.gene60803.t1 MTR_7g011990 54.496 367 129 4 8 343 8 367 7.91e-138 396
MS.gene60803.t1 MTR_7g012070 52.660 376 144 4 1 343 1 375 1.44e-135 390
MS.gene60803.t1 MTR_7g012090 53.191 376 142 4 1 343 1 375 2.41e-135 390
MS.gene60803.t1 MTR_2g055940 55.241 353 124 4 21 343 15 363 3.15e-134 387
MS.gene60803.t1 MTR_3g021430 51.247 361 142 5 13 343 1 357 3.45e-119 348
MS.gene60803.t1 MTR_3g021440 50.425 353 141 5 21 343 22 370 3.16e-115 338
MS.gene60803.t1 MTR_1g036460 46.757 370 160 7 7 343 5 370 3.63e-109 323
MS.gene60803.t1 MTR_7g012020 59.041 271 104 4 8 277 7 271 1.72e-108 319
MS.gene60803.t1 MTR_7g012020 62.857 245 87 3 8 251 7 248 8.07e-108 315
MS.gene60803.t1 MTR_1g036490 45.652 368 164 6 9 343 6 370 1.58e-107 319
MS.gene60803.t1 MTR_1g036510 45.308 373 160 7 12 343 15 384 3.27e-103 308
MS.gene60803.t1 MTR_3g092900 43.956 364 168 7 10 343 6 363 6.45e-95 286
MS.gene60803.t1 MTR_5g098170 39.831 354 179 6 20 343 14 363 1.62e-78 244
MS.gene60803.t1 MTR_1g050220 41.176 323 127 6 26 326 6 287 1.14e-73 230
MS.gene60803.t1 MTR_7g118300 37.838 370 186 8 8 343 16 375 1.24e-69 222
MS.gene60803.t1 MTR_1g036510 48.193 249 115 5 12 249 15 260 1.41e-69 218
MS.gene60803.t1 MTR_1g036510 48.193 249 115 5 12 249 15 260 4.49e-69 218
MS.gene60803.t1 MTR_0591s0010 36.011 361 189 9 18 343 24 377 2.81e-63 206
MS.gene60803.t1 MTR_7g118320 34.605 367 196 9 13 343 4 362 7.11e-63 204
MS.gene60803.t1 MTR_8g068690 35.097 359 195 8 18 343 23 376 5.12e-61 200
MS.gene60803.t1 MTR_8g068750 34.540 359 197 8 18 343 24 377 5.95e-60 197
MS.gene60803.t1 MTR_8g068870 33.880 366 204 8 11 343 3 363 2.18e-55 185
MS.gene60803.t1 MTR_8g024160 31.742 356 165 6 19 343 20 328 2.87e-49 168
MS.gene60803.t1 MTR_6g078850 31.635 373 218 7 3 342 14 382 2.21e-48 170
MS.gene60803.t1 MTR_3g096050 32.800 375 194 12 9 343 2 358 3.91e-46 160
MS.gene60803.t1 MTR_8g068570 33.129 326 154 8 18 310 24 318 8.55e-45 156
MS.gene60803.t1 MTR_6g060290 47.802 182 73 6 8 186 8 170 1.22e-44 151
MS.gene60803.t1 MTR_2g072790 30.460 348 200 7 13 327 1 339 1.30e-44 156
MS.gene60803.t1 MTR_8g068690 37.872 235 139 5 18 249 23 253 2.83e-44 154
MS.gene60803.t1 MTR_8g068730 30.919 359 178 9 18 343 24 345 9.65e-43 151
MS.gene60803.t1 MTR_8g068600 37.073 205 123 4 47 249 28 228 3.69e-37 135
MS.gene60803.t1 MTR_3g096070 31.200 375 177 15 9 343 2 335 9.19e-36 132
MS.gene60803.t1 MTR_3g096050 35.918 245 141 7 9 249 2 234 6.06e-34 126
MS.gene60803.t1 MTR_5g074600 25.602 332 200 10 34 329 26 346 1.27e-29 116
MS.gene60803.t1 MTR_5g074680 27.410 332 194 9 34 329 27 347 2.27e-29 116
MS.gene60803.t1 MTR_0079s0070 29.721 323 180 11 41 328 10 320 2.39e-29 115
MS.gene60803.t1 MTR_4g038440 29.721 323 180 11 41 328 44 354 3.09e-29 115
MS.gene60803.t1 MTR_0017s0100 29.969 327 174 15 41 328 44 354 4.68e-29 115
MS.gene60803.t1 MTR_5g074580 26.205 332 198 10 34 329 27 347 6.55e-26 106
MS.gene60803.t1 MTR_5g074540 26.377 345 188 12 34 342 26 340 8.36e-26 105
MS.gene60803.t1 MTR_3g083620 25.697 323 194 8 39 328 38 347 1.34e-25 105
MS.gene60803.t1 MTR_8g068740 28.814 295 165 8 18 309 24 276 7.27e-25 102
MS.gene60803.t1 MTR_4g088345 26.524 328 189 10 38 328 30 342 1.40e-24 102
MS.gene60803.t1 MTR_8g068620 51.190 84 41 0 166 249 2 85 4.27e-24 95.5
MS.gene60803.t1 MTR_7g014510 25.234 321 199 8 41 329 33 344 6.47e-24 100
MS.gene60803.t1 MTR_4g033200 27.247 356 212 10 13 328 1 349 5.90e-23 98.6
MS.gene60803.t1 MTR_1g076940 25.309 324 197 7 41 328 33 347 7.02e-23 98.2
MS.gene60803.t1 MTR_4g079160 26.271 354 201 14 19 328 4 341 9.68e-23 97.8
MS.gene60803.t1 MTR_4g088200 28.024 339 200 10 34 336 26 356 2.18e-22 97.1
MS.gene60803.t1 MTR_4g033015 26.685 356 214 9 13 328 1 349 4.34e-22 95.9
MS.gene60803.t1 MTR_4g088340 25.610 328 192 10 38 328 7 319 4.59e-22 95.5
MS.gene60803.t1 MTR_7g024500 25.305 328 188 10 38 328 29 336 4.25e-21 93.2
MS.gene60803.t1 MTR_7g024520 25.301 332 191 10 34 328 25 336 6.35e-21 92.4
MS.gene60803.t1 MTR_7g014570 25.000 324 191 9 41 329 33 339 5.76e-20 89.7
MS.gene60803.t1 MTR_4g033150 26.769 325 195 8 40 328 32 349 8.86e-20 89.4
MS.gene60803.t1 MTR_5g074610 23.952 334 172 11 34 328 22 312 4.96e-19 87.0
MS.gene60803.t1 MTR_4g038440 31.776 214 129 9 41 249 44 245 2.22e-18 84.0
MS.gene60803.t1 MTR_0794s0020 26.877 253 167 8 16 260 4 246 7.37e-17 79.3
MS.gene60803.t1 MTR_1g076930 26.047 215 144 6 38 248 7 210 3.84e-16 77.4
MS.gene60803.t1 MTR_4g088190 27.326 344 199 10 34 336 26 359 5.96e-15 75.5
MS.gene60803.t1 MTR_4g033170 26.211 351 208 10 17 328 5 343 6.83e-14 72.4
MS.gene60803.t1 MTR_8g068760 38.710 93 55 2 252 343 142 233 1.41e-13 69.7
MS.gene60803.t1 MTR_8g068580 40.217 92 53 2 253 343 43 133 1.13e-12 64.7
MS.gene60803.t1 MTR_4g033085 26.496 351 207 10 17 328 5 343 2.45e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60803.t1 AT5G54160 42.733 344 161 5 20 333 15 352 4.46e-88 269
MS.gene60803.t1 AT1G51990 36.364 363 193 7 12 342 5 361 1.68e-70 224
MS.gene60803.t1 AT1G51990 36.364 363 193 7 12 342 5 361 1.26e-69 222
MS.gene60803.t1 AT1G77520 35.561 374 196 9 6 343 17 381 3.95e-67 216
MS.gene60803.t1 AT1G33030 36.286 350 180 9 28 343 10 350 1.24e-60 198
MS.gene60803.t1 AT1G63140 35.376 359 193 9 21 343 26 381 6.09e-58 192
MS.gene60803.t1 AT1G63140 35.376 359 193 9 21 343 46 401 1.28e-57 192
MS.gene60803.t1 AT1G77530 36.096 374 194 9 6 343 17 381 1.00e-55 186
MS.gene60803.t1 AT1G21130 35.694 353 186 10 26 343 27 373 3.45e-55 185
MS.gene60803.t1 AT1G21110 35.127 353 188 10 26 343 27 373 1.39e-53 181
MS.gene60803.t1 AT1G21100 35.127 353 188 10 26 343 27 373 5.91e-53 179
MS.gene60803.t1 AT5G53810 35.088 342 184 7 38 343 39 378 4.14e-52 177
MS.gene60803.t1 AT1G21120 34.561 353 190 10 26 343 27 373 5.73e-52 176
MS.gene60803.t1 AT1G21120 34.278 353 191 10 26 343 75 421 1.45e-51 176
MS.gene60803.t1 AT1G76790 33.613 357 190 9 26 343 17 365 4.68e-46 160
MS.gene60803.t1 AT3G53140 31.429 350 191 8 17 327 5 344 2.22e-43 153
MS.gene60803.t1 AT1G33030 36.905 252 148 6 28 277 10 252 1.05e-42 149
MS.gene60803.t1 AT1G33030 36.905 252 148 6 28 277 10 252 2.11e-42 148
MS.gene60803.t1 AT5G37170 33.129 326 146 10 56 343 43 334 6.56e-41 146
MS.gene60803.t1 AT1G63140 37.295 244 140 6 21 253 46 287 5.17e-39 140
MS.gene60803.t1 AT1G77530 38.554 249 140 5 6 249 17 257 9.06e-39 139
MS.gene60803.t1 AT1G63140 37.179 234 140 5 21 249 46 277 3.87e-38 138
MS.gene60803.t1 AT1G21130 40.789 228 126 6 26 249 27 249 1.31e-36 134
MS.gene60803.t1 AT1G62900 37.931 203 94 4 172 343 4 205 1.00e-34 126
MS.gene60803.t1 AT5G37170 37.374 198 91 5 178 343 38 234 6.14e-32 120
MS.gene60803.t1 AT5G37170 37.433 187 84 5 189 343 1 186 4.32e-29 111
MS.gene60803.t1 AT4G35160 27.717 368 202 13 9 328 16 367 3.38e-25 105
MS.gene60803.t1 AT4G35150 30.734 218 102 8 162 336 105 316 7.07e-24 100

Find 70 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCTTTATTAATGGATATT+TGG 0.122440 1.2:+72223622 None:intergenic
AAGTTAATTCCCTTTATTAA+TGG 0.172707 1.2:+72223614 None:intergenic
TCACTTGTGTTTGGTTCTTC+TGG 0.194077 1.2:+72223119 None:intergenic
TCTATCCAGGATGAACTTTA+AGG 0.194998 1.2:-72223873 MS.gene60803:intron
TGATGAAAGTAGAGGTTATT+TGG 0.221768 1.2:-72224191 MS.gene60803:CDS
GAAAATGCACCACCACTTTC+AGG 0.245970 1.2:-72223572 MS.gene60803:intron
ACGGCAAGCAACTTGAAATT+TGG 0.263471 1.2:+72222989 None:intergenic
ATCCAAATATCCATTAATAA+AGG 0.266045 1.2:-72223624 MS.gene60803:CDS
TGCCGTGCTTTCAACAGTTT+GGG 0.308799 1.2:-72222972 MS.gene60803:CDS
TTGCCGTGCTTTCAACAGTT+TGG 0.318040 1.2:-72222973 MS.gene60803:CDS
TTAGATTCTTCACTTGTGTT+TGG 0.326373 1.2:+72223110 None:intergenic
ATCCTGCATTGTTACAAGTT+TGG 0.339882 1.2:-72224144 MS.gene60803:intron
GTTCTGAGGTAGCACTAATT+TGG 0.352301 1.2:+72224533 None:intergenic
GATTTGTTCAAGAACGTTCA+TGG 0.364216 1.2:-72223827 MS.gene60803:CDS
AGCATCCGGTCAAGCCTATT+AGG 0.381108 1.2:+72224322 None:intergenic
GGTGGTGCCGAGAGAGTTTA+CGG 0.386591 1.2:-72224244 MS.gene60803:CDS
AGCACTCGGACTTGCCTAAT+AGG 0.390804 1.2:-72224336 MS.gene60803:CDS
AGTGACAAAGTATGAATTCA+TGG 0.400109 1.2:-72223804 MS.gene60803:CDS
GTTATCCTCCTTGGTAATGT+AGG 0.401834 1.2:+72224555 None:intergenic
ACTAATTTGGTTATCCTCCT+TGG 0.402910 1.2:+72224546 None:intergenic
TCCAAATATCCATTAATAAA+GGG 0.404369 1.2:-72223623 MS.gene60803:CDS
TGAAATATACACTGGATTTG+AGG 0.429712 1.2:-72223705 MS.gene60803:CDS
CACAAAGCTTTATCACCAAA+TGG 0.430052 1.2:-72223170 MS.gene60803:CDS
ATAGCTAAGGCAACACCATC+TGG 0.438383 1.2:-72224409 MS.gene60803:CDS
AAATAACCTCTACTTTCATC+AGG 0.441916 1.2:+72224193 None:intergenic
GAGAAATTGAGCAAACTCTC+TGG 0.445194 1.2:-72223017 MS.gene60803:CDS
GAAATATACACTGGATTTGA+GGG 0.446533 1.2:-72223704 MS.gene60803:CDS
GTTGATGTTGGAGGTGGAAG+TGG 0.451719 1.2:-72223668 MS.gene60803:CDS
ATAGCAGCATTTAACACTGC+TGG 0.468445 1.2:+72224454 None:intergenic
CTCATGTTTATCACAGTTGG+TGG 0.480360 1.2:-72223065 MS.gene60803:CDS
ATATCAACATTAGTTGATGT+TGG 0.501358 1.2:-72223680 MS.gene60803:CDS
ACATTAGTTGATGTTGGAGG+TGG 0.504612 1.2:-72223674 MS.gene60803:CDS
GAGAGTTTACGGACTCTCAA+TGG 0.504711 1.2:-72224233 MS.gene60803:CDS
AATCTCATGTTTATCACAGT+TGG 0.506086 1.2:-72223068 MS.gene60803:CDS
CTCGGCACCACCATCCTCAA+TGG 0.508530 1.2:+72224255 None:intergenic
TGCTGGATAAACAAGATTAG+TGG 0.509486 1.2:+72224471 None:intergenic
TTTATTTGAGATCATAGCTA+AGG 0.511778 1.2:-72224422 MS.gene60803:CDS
TAGCAAGCAAACGCAGCATC+CGG 0.515114 1.2:+72224308 None:intergenic
TTTCAACAGTTTGGGAGTGA+TGG 0.524643 1.2:-72222964 MS.gene60803:CDS
TGTTTATCACAGTTGGTGGA+AGG 0.529690 1.2:-72223061 MS.gene60803:CDS
TCCGAGTGCTGCGTTGATGC+TGG 0.530284 1.2:+72224349 None:intergenic
GTTTATCACAGTTGGTGGAA+GGG 0.544261 1.2:-72223060 MS.gene60803:CDS
ATCCTCAATGGTTTGAGTAG+TGG 0.545005 1.2:+72224267 None:intergenic
ACTTGCCTAATAGGCTTGAC+CGG 0.546431 1.2:-72224327 MS.gene60803:CDS
TACCAAACTTGTAACAATGC+AGG 0.552486 1.2:+72224142 None:intergenic
AAAGTATGAATTCATGGGAA+AGG 0.556043 1.2:-72223798 MS.gene60803:CDS
ACCAGCATCAACGCAGCACT+CGG 0.557596 1.2:-72224350 MS.gene60803:CDS
TATCATGTTATACCTGAAAG+TGG 0.563244 1.2:+72223560 None:intergenic
GTGACAAAGTATGAATTCAT+GGG 0.563593 1.2:-72223803 MS.gene60803:CDS
AATTTAGAAGCAATTTCTGA+TGG 0.564927 1.2:+72224373 None:intergenic
TTCCACTACTCAAACCATTG+AGG 0.566219 1.2:-72224269 MS.gene60803:CDS
TCAACATTAGTTGATGTTGG+AGG 0.568137 1.2:-72223677 MS.gene60803:CDS
CTCCCAAACTGTTGAAAGCA+CGG 0.568203 1.2:+72222970 None:intergenic
TGAGAGTCCGTAAACTCTCT+CGG 0.571590 1.2:+72224237 None:intergenic
AGAATGCTTGAAATATACAC+TGG 0.575900 1.2:-72223713 MS.gene60803:CDS
GAACTTTAAGGAAGCAGTGG+TGG 0.580228 1.2:-72223861 MS.gene60803:CDS
CTCTACTTTCATCAGGGACA+AGG 0.594593 1.2:+72224200 None:intergenic
ACTGTCTTCAGTTTGTTCTG+AGG 0.597743 1.2:+72224519 None:intergenic
CAGTGCATGTCTTTCAGCAA+TGG 0.602261 1.2:-72224500 MS.gene60803:CDS
CTTGTCCCTGATGAAAGTAG+AGG 0.618925 1.2:-72224199 MS.gene60803:CDS
AAATGGAAAAGTGATTATTG+TGG 0.620942 1.2:-72223153 MS.gene60803:CDS
GATGAACTTTAAGGAAGCAG+TGG 0.634636 1.2:-72223864 MS.gene60803:CDS
GTTTACGGACTCTCAATGGT+CGG 0.636343 1.2:-72224229 MS.gene60803:CDS
ACTACTCAAACCATTGAGGA+TGG 0.637452 1.2:-72224265 MS.gene60803:CDS
GGGAAATTCCTACATTACCA+AGG 0.642464 1.2:-72224563 MS.gene60803:CDS
AATAACCTCTACTTTCATCA+GGG 0.648899 1.2:+72224194 None:intergenic
ACTCAAACCATTGAGGATGG+TGG 0.675966 1.2:-72224262 MS.gene60803:CDS
GGTGACATGAAAGCACCAGA+TGG 0.713263 1.2:+72224394 None:intergenic
AAATTCCTACATTACCAAGG+AGG 0.730361 1.2:-72224560 MS.gene60803:CDS
CATGTTATACCTGAAAGTGG+TGG 0.738842 1.2:+72223563 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGGATATATATAAGTTATAA+AGG - chr1.2:72223491-72223510 MS.gene60803:intron 15.0%
!! TCATACATATATAAAATCAA+GGG - chr1.2:72223416-72223435 MS.gene60803:intron 15.0%
!! AAGTTAATTCCCTTTATTAA+TGG + chr1.2:72223904-72223923 None:intergenic 20.0%
!! AGTAAAACTTTAGTATAAGA+TGG + chr1.2:72224019-72224038 None:intergenic 20.0%
!! ATATTCACCTATTAAACATA+TGG - chr1.2:72223468-72223487 MS.gene60803:intron 20.0%
!! ATCCAAATATCCATTAATAA+AGG - chr1.2:72223891-72223910 MS.gene60803:intron 20.0%
!! CTCATACATATATAAAATCA+AGG - chr1.2:72223415-72223434 MS.gene60803:intron 20.0%
!! TCCAAATATCCATTAATAAA+GGG - chr1.2:72223892-72223911 MS.gene60803:intron 20.0%
!!! CCAAATTTTTAACAAATCAA+TGG - chr1.2:72223753-72223772 MS.gene60803:CDS 20.0%
!!! CCATTGATTTGTTAAAAATT+TGG + chr1.2:72223756-72223775 None:intergenic 20.0%
! AAATGGAAAAGTGATTATTG+TGG - chr1.2:72224362-72224381 MS.gene60803:CDS 25.0%
! AATTTAGAAGCAATTTCTGA+TGG + chr1.2:72223145-72223164 None:intergenic 25.0%
! ATATCCTCCATATGTTTAAT+AGG + chr1.2:72223478-72223497 None:intergenic 25.0%
! TTAAGCTAATTGTAGCAATT+AGG - chr1.2:72223575-72223594 MS.gene60803:CDS 25.0%
!! ATATCAACATTAGTTGATGT+TGG - chr1.2:72223835-72223854 MS.gene60803:CDS 25.0%
!! ATTTTTCATCTGACCAATTA+TGG + chr1.2:72224302-72224321 None:intergenic 25.0%
!! GACTTTGTTTACATAATTGT+AGG - chr1.2:72224269-72224288 MS.gene60803:CDS 25.0%
!! TCCCTTTATTAATGGATATT+TGG + chr1.2:72223896-72223915 None:intergenic 25.0%
!! TTTATTTGAGATCATAGCTA+AGG - chr1.2:72223093-72223112 MS.gene60803:CDS 25.0%
!!! ACAATAATCACTTTTCCATT+TGG + chr1.2:72224363-72224382 None:intergenic 25.0%
!!! TCTTACTTTTGTTCCAATTA+TGG - chr1.2:72223605-72223624 MS.gene60803:CDS 25.0%
AAAGTATGAATTCATGGGAA+AGG - chr1.2:72223717-72223736 MS.gene60803:CDS 30.0%
AAATAACCTCTACTTTCATC+AGG + chr1.2:72223325-72223344 None:intergenic 30.0%
AATAACCTCTACTTTCATCA+GGG + chr1.2:72223324-72223343 None:intergenic 30.0%
AATCTCATGTTTATCACAGT+TGG - chr1.2:72224447-72224466 MS.gene60803:CDS 30.0%
ACTAAAGCTTAGACCATAAT+TGG + chr1.2:72223621-72223640 None:intergenic 30.0%
AGAATGCTTGAAATATACAC+TGG - chr1.2:72223802-72223821 MS.gene60803:CDS 30.0%
AGTGACAAAGTATGAATTCA+TGG - chr1.2:72223711-72223730 MS.gene60803:CDS 30.0%
GAAATATACACTGGATTTGA+GGG - chr1.2:72223811-72223830 MS.gene60803:CDS 30.0%
GTGACAAAGTATGAATTCAT+GGG - chr1.2:72223712-72223731 MS.gene60803:CDS 30.0%
TATACTTACCTTCAGTATCA+TGG + chr1.2:72224145-72224164 None:intergenic 30.0%
TATCATGTTATACCTGAAAG+TGG + chr1.2:72223958-72223977 None:intergenic 30.0%
TGAAATATACACTGGATTTG+AGG - chr1.2:72223810-72223829 MS.gene60803:CDS 30.0%
TGATGAAAGTAGAGGTTATT+TGG - chr1.2:72223324-72223343 MS.gene60803:intron 30.0%
TTAGATTCTTCACTTGTGTT+TGG + chr1.2:72224408-72224427 None:intergenic 30.0%
TTCACCTATTAAACATATGG+AGG - chr1.2:72223471-72223490 MS.gene60803:intron 30.0%
! ATACCACCAACTTTTGTTAA+GGG - chr1.2:72224070-72224089 MS.gene60803:intron 30.0%
! TATACCACCAACTTTTGTTA+AGG - chr1.2:72224069-72224088 MS.gene60803:intron 30.0%
! TGGTGCATTTTCAATAACTT+GGG + chr1.2:72223935-72223954 None:intergenic 30.0%
AAAATCAAGGGATAGTGACT+TGG - chr1.2:72223428-72223447 MS.gene60803:intron 35.0%
AAATTCCTACATTACCAAGG+AGG - chr1.2:72222955-72222974 MS.gene60803:CDS 35.0%
AATCCCTTAACAAAAGTTGG+TGG + chr1.2:72224076-72224095 None:intergenic 35.0%
ACTAATTTGGTTATCCTCCT+TGG + chr1.2:72222972-72222991 None:intergenic 35.0%
ATCCTGCATTGTTACAAGTT+TGG - chr1.2:72223371-72223390 MS.gene60803:intron 35.0%
CTCAATCCCTTAACAAAAGT+TGG + chr1.2:72224079-72224098 None:intergenic 35.0%
TACCAAACTTGTAACAATGC+AGG + chr1.2:72223376-72223395 None:intergenic 35.0%
TCTATCCAGGATGAACTTTA+AGG - chr1.2:72223642-72223661 MS.gene60803:CDS 35.0%
TGCTGGATAAACAAGATTAG+TGG + chr1.2:72223047-72223066 None:intergenic 35.0%
! CACAAAGCTTTATCACCAAA+TGG - chr1.2:72224345-72224364 MS.gene60803:CDS 35.0%
! CTAAGCTTTAGTTTCTATCC+AGG - chr1.2:72223629-72223648 MS.gene60803:CDS 35.0%
! GATTTGTTCAAGAACGTTCA+TGG - chr1.2:72223688-72223707 MS.gene60803:CDS 35.0%
! GGTGCATTTTCAATAACTTG+GGG + chr1.2:72223934-72223953 None:intergenic 35.0%
! GTGGTGCATTTTCAATAACT+TGG + chr1.2:72223936-72223955 None:intergenic 35.0%
! TCAACATTAGTTGATGTTGG+AGG - chr1.2:72223838-72223857 MS.gene60803:CDS 35.0%
ACGGCAAGCAACTTGAAATT+TGG + chr1.2:72224529-72224548 None:intergenic 40.0%
ACTACTCAAACCATTGAGGA+TGG - chr1.2:72223250-72223269 MS.gene60803:intron 40.0%
ATAGCAGCATTTAACACTGC+TGG + chr1.2:72223064-72223083 None:intergenic 40.0%
ATCCTCAATGGTTTGAGTAG+TGG + chr1.2:72223251-72223270 None:intergenic 40.0%
ATGTTTGCAAGTGTTCCACA+GGG - chr1.2:72224114-72224133 MS.gene60803:intron 40.0%
CATGTTATACCTGAAAGTGG+TGG + chr1.2:72223955-72223974 None:intergenic 40.0%
CTCATGTTTATCACAGTTGG+TGG - chr1.2:72224450-72224469 MS.gene60803:CDS 40.0%
GAGAAATTGAGCAAACTCTC+TGG - chr1.2:72224498-72224517 MS.gene60803:CDS 40.0%
GGGAAATTCCTACATTACCA+AGG - chr1.2:72222952-72222971 MS.gene60803:CDS 40.0%
TATGTTTGCAAGTGTTCCAC+AGG - chr1.2:72224113-72224132 MS.gene60803:intron 40.0%
TGCTTCCTTAAAGTTCATCC+TGG + chr1.2:72223650-72223669 None:intergenic 40.0%
TGTTAAGGGATTGAGCATGT+TGG - chr1.2:72224084-72224103 MS.gene60803:intron 40.0%
TTCCACTACTCAAACCATTG+AGG - chr1.2:72223246-72223265 MS.gene60803:intron 40.0%
TTTCAACAGTTTGGGAGTGA+TGG - chr1.2:72224551-72224570 MS.gene60803:CDS 40.0%
! ACATTAGTTGATGTTGGAGG+TGG - chr1.2:72223841-72223860 MS.gene60803:CDS 40.0%
! ACTGTCTTCAGTTTGTTCTG+AGG + chr1.2:72222999-72223018 None:intergenic 40.0%
! GATGAACTTTAAGGAAGCAG+TGG - chr1.2:72223651-72223670 MS.gene60803:CDS 40.0%
!! GTTATCCTCCTTGGTAATGT+AGG + chr1.2:72222963-72222982 None:intergenic 40.0%
!! GTTCTGAGGTAGCACTAATT+TGG + chr1.2:72222985-72223004 None:intergenic 40.0%
!! GTTTATCACAGTTGGTGGAA+GGG - chr1.2:72224455-72224474 MS.gene60803:CDS 40.0%
!! TCACTTGTGTTTGGTTCTTC+TGG + chr1.2:72224399-72224418 None:intergenic 40.0%
!! TGTTTATCACAGTTGGTGGA+AGG - chr1.2:72224454-72224473 MS.gene60803:CDS 40.0%
ACTCAAACCATTGAGGATGG+TGG - chr1.2:72223253-72223272 MS.gene60803:intron 45.0%
ACTTGCCTAATAGGCTTGAC+CGG - chr1.2:72223188-72223207 MS.gene60803:CDS 45.0%
ATAGCTAAGGCAACACCATC+TGG - chr1.2:72223106-72223125 MS.gene60803:CDS 45.0%
CAGTGCATGTCTTTCAGCAA+TGG - chr1.2:72223015-72223034 MS.gene60803:CDS 45.0%
CTCCCAAACTGTTGAAAGCA+CGG + chr1.2:72224548-72224567 None:intergenic 45.0%
CTCTACTTTCATCAGGGACA+AGG + chr1.2:72223318-72223337 None:intergenic 45.0%
CTTGTCCCTGATGAAAGTAG+AGG - chr1.2:72223316-72223335 MS.gene60803:intron 45.0%
GAAAATGCACCACCACTTTC+AGG - chr1.2:72223943-72223962 MS.gene60803:intron 45.0%
GAGAGTTTACGGACTCTCAA+TGG - chr1.2:72223282-72223301 MS.gene60803:intron 45.0%
GTTTACGGACTCTCAATGGT+CGG - chr1.2:72223286-72223305 MS.gene60803:intron 45.0%
TAAGGGATTGAGCATGTTGG+AGG - chr1.2:72224087-72224106 MS.gene60803:intron 45.0%
TGAGAGTCCGTAAACTCTCT+CGG + chr1.2:72223281-72223300 None:intergenic 45.0%
TGCCGTGCTTTCAACAGTTT+GGG - chr1.2:72224543-72224562 MS.gene60803:CDS 45.0%
TGTAGGCTGTGTGCCATAAT+TGG - chr1.2:72224286-72224305 MS.gene60803:CDS 45.0%
TTGCCGTGCTTTCAACAGTT+TGG - chr1.2:72224542-72224561 MS.gene60803:CDS 45.0%
! GAACTTTAAGGAAGCAGTGG+TGG - chr1.2:72223654-72223673 MS.gene60803:CDS 45.0%
AGCACTCGGACTTGCCTAAT+AGG - chr1.2:72223179-72223198 MS.gene60803:CDS 50.0%
AGCATCCGGTCAAGCCTATT+AGG + chr1.2:72223196-72223215 None:intergenic 50.0%
AGTATCATGGCATCACCCTG+TGG + chr1.2:72224132-72224151 None:intergenic 50.0%
GGGTGATGCCATGATACTGA+AGG - chr1.2:72224134-72224153 MS.gene60803:intron 50.0%
GTTGATGTTGGAGGTGGAAG+TGG - chr1.2:72223847-72223866 MS.gene60803:CDS 50.0%
TAGCAAGCAAACGCAGCATC+CGG + chr1.2:72223210-72223229 None:intergenic 50.0%
!! GGTGACATGAAAGCACCAGA+TGG + chr1.2:72223124-72223143 None:intergenic 50.0%
ACCAGCATCAACGCAGCACT+CGG - chr1.2:72223165-72223184 MS.gene60803:CDS 55.0%
! GGTGGTGCCGAGAGAGTTTA+CGG - chr1.2:72223271-72223290 MS.gene60803:intron 55.0%
CTCGGCACCACCATCCTCAA+TGG + chr1.2:72223263-72223282 None:intergenic 60.0%
! TCCGAGTGCTGCGTTGATGC+TGG + chr1.2:72223169-72223188 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 72222950 72224587 72222950 ID=MS.gene60803
chr1.2 mRNA 72222950 72224587 72222950 ID=MS.gene60803.t1;Parent=MS.gene60803
chr1.2 exon 72224145 72224587 72224145 ID=MS.gene60803.t1.exon1;Parent=MS.gene60803.t1
chr1.2 CDS 72224145 72224587 72224145 ID=cds.MS.gene60803.t1;Parent=MS.gene60803.t1
chr1.2 exon 72223573 72223886 72223573 ID=MS.gene60803.t1.exon2;Parent=MS.gene60803.t1
chr1.2 CDS 72223573 72223886 72223573 ID=cds.MS.gene60803.t1;Parent=MS.gene60803.t1
chr1.2 exon 72222950 72223224 72222950 ID=MS.gene60803.t1.exon3;Parent=MS.gene60803.t1
chr1.2 CDS 72222950 72223224 72222950 ID=cds.MS.gene60803.t1;Parent=MS.gene60803.t1
Gene Sequence

>MS.gene60803

ATGGGAAATTCCTACATTACCAAGGAGGATAACCAAATTAGTGCTACCTCAGAACAAACTGAAGACAGTGCATGTCTTTCAGCAATGGTACTTACCACTAATCTTGTTTATCCAGCAGTGTTAAATGCTGCTATTGATCTCAATTTATTTGAGATCATAGCTAAGGCAACACCATCTGGTGCTTTCATGTCACCATCAGAAATTGCTTCTAAATTACCAGCATCAACGCAGCACTCGGACTTGCCTAATAGGCTTGACCGGATGCTGCGTTTGCTTGCTAGTTATTCTGTTCTTACTTCCACTACTCAAACCATTGAGGATGGTGGTGCCGAGAGAGTTTACGGACTCTCAATGGTCGGAAAATACCTTGTCCCTGATGAAAGTAGAGGTTATTTGGCTTCATTTACTACATTTCTATGTTATCCTGCATTGTTACAAGTTTGGTAAGTTATTTATTTCTCATTTCTCATACATATATAAAATCAAGGGATAGTGACTTGGATAAATAGTTTAATTAAATATTCACCTATTAAACATATGGAGGATATATATAAGTTATAAAGGTAGCTTTATAAAAAAAAAAAAAAAAAGTTAATATAAATAATGTTAAAGAGAAAGTGATAGTTTAAGCTAATTGTAGCAATTAGGTATTTAATCTTACTTTTGTTCCAATTATGGTCTAAGCTTTAGTTTCTATCCAGGATGAACTTTAAGGAAGCAGTGGTGGATGAAGACATTGATTTGTTCAAGAACGTTCATGGAGTGACAAAGTATGAATTCATGGGAAAGGATAAAAAAATGAACCAAATTTTTAACAAATCAATGGTTGATGTATGTGCTACAGAGATGAAAAGAATGCTTGAAATATACACTGGATTTGAGGGAATATCAACATTAGTTGATGTTGGAGGTGGAAGTGGAAGAAATCTTGAATTGATAATATCCAAATATCCATTAATAAAGGGAATTAACTTTGATCTTCCCCAAGTTATTGAAAATGCACCACCACTTTCAGGTATAACATGATATATAATAATTTTTCTTCACATATATCATTATCAACATGCCATCTTATACTAAAGTTTTACTTTGCATGTATATTATAATTAATAAAGTATATATACCACCAACTTTTGTTAAGGGATTGAGCATGTTGGAGGAGATATGTTTGCAAGTGTTCCACAGGGTGATGCCATGATACTGAAGGTAAGTATATAAATATTAATTAGTTAGATCTAACTGATTAATTAATTACTTGAAACTTTATAGATTAATTTATCTGATTTTTTTAATTAAAGTGCTAACTACAACTTTTTGTTGACTTTGTTTACATAATTGTAGGCTGTGTGCCATAATTGGTCAGATGAAAAATGCATTGAGTTTTTGAGCAATTGTCACAAAGCTTTATCACCAAATGGAAAAGTGATTATTGTGGAGTTCATATTGCCAGAAGAACCAAACACAAGTGAAGAATCTAAGCTTGTTTCAACTCTTGACAATCTCATGTTTATCACAGTTGGTGGAAGGGAAAGAACTGAGAAACAATATGAGAAATTGAGCAAACTCTCTGGATTTTCCAAATTTCAAGTTGCTTGCCGTGCTTTCAACAGTTTGGGAGTGATGGAATTTTATAAATGA
Protein sequence

>MS.gene60803.t1

MGNSYITKEDNQISATSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPSGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTQTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK