Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053403.t1 | XP_003590039.1 | 99.1 | 537 | 5 | 0 | 1 | 537 | 1 | 537 | 1.90E-304 | 1054.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053403.t1 | O48639 | 81.0 | 516 | 96 | 2 | 4 | 519 | 5 | 518 | 6.4e-240 | 831.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053403.t1 | G7I5D0 | 99.1 | 537 | 5 | 0 | 1 | 537 | 1 | 537 | 1.4e-304 | 1054.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene053403 | 0.818002 | 2.46E-52 | -1.69E-46 |
| MS.gene050096 | MS.gene053403 | 0.804153 | 2.48E-49 | -1.69E-46 |
| MS.gene052211 | MS.gene053403 | 0.822511 | 2.28E-53 | -1.69E-46 |
| MS.gene053403 | MS.gene053406 | 0.874561 | 6.14E-68 | -1.69E-46 |
| MS.gene053403 | MS.gene054146 | 0.808508 | 2.99E-50 | -1.69E-46 |
| MS.gene053403 | MS.gene055124 | 0.808374 | 3.20E-50 | -1.69E-46 |
| MS.gene053403 | MS.gene055240 | 0.813798 | 2.13E-51 | -1.69E-46 |
| MS.gene053403 | MS.gene056218 | 0.800548 | 1.37E-48 | -1.69E-46 |
| MS.gene053403 | MS.gene062005 | 0.803514 | 3.36E-49 | -1.69E-46 |
| MS.gene053403 | MS.gene062006 | 0.805791 | 1.13E-49 | -1.69E-46 |
| MS.gene053403 | MS.gene063988 | 0.815874 | 7.39E-52 | -1.69E-46 |
| MS.gene053403 | MS.gene064313 | 0.811335 | 7.37E-51 | -1.69E-46 |
| MS.gene053403 | MS.gene065466 | 0.818396 | 2.00E-52 | -1.69E-46 |
| MS.gene053403 | MS.gene066500 | 0.819441 | 1.16E-52 | -1.69E-46 |
| MS.gene053403 | MS.gene066584 | 0.800921 | 1.15E-48 | -1.69E-46 |
| MS.gene053403 | MS.gene066602 | 0.860415 | 2.10E-63 | -1.69E-46 |
| MS.gene053403 | MS.gene070947 | 0.81303 | 3.15E-51 | -1.69E-46 |
| MS.gene053403 | MS.gene072418 | 0.834379 | 3.10E-56 | -1.69E-46 |
| MS.gene053403 | MS.gene072622 | 0.806899 | 6.57E-50 | -1.69E-46 |
| MS.gene053403 | MS.gene072625 | 0.807577 | 4.72E-50 | -1.69E-46 |
| MS.gene053403 | MS.gene073526 | 0.832281 | 1.03E-55 | -1.69E-46 |
| MS.gene053403 | MS.gene08733 | 0.800073 | 1.71E-48 | -1.69E-46 |
| MS.gene053403 | MS.gene23413 | 0.805697 | 1.18E-49 | -1.69E-46 |
| MS.gene053403 | MS.gene23552 | 0.802958 | 4.38E-49 | -1.69E-46 |
| MS.gene053403 | MS.gene24862 | 0.843602 | 1.27E-58 | -1.69E-46 |
| MS.gene053403 | MS.gene26294 | 0.806493 | 8.01E-50 | -1.69E-46 |
| MS.gene053403 | MS.gene26517 | 0.80033 | 1.52E-48 | -1.69E-46 |
| MS.gene053403 | MS.gene27185 | 0.816178 | 6.32E-52 | -1.69E-46 |
| MS.gene053403 | MS.gene28548 | 0.816607 | 5.07E-52 | -1.69E-46 |
| MS.gene053403 | MS.gene28619 | 0.805857 | 1.09E-49 | -1.69E-46 |
| MS.gene053403 | MS.gene28620 | 0.829081 | 6.28E-55 | -1.69E-46 |
| MS.gene053403 | MS.gene29826 | 0.810446 | 1.15E-50 | -1.69E-46 |
| MS.gene053403 | MS.gene33445 | 0.800653 | 1.30E-48 | -1.69E-46 |
| MS.gene053403 | MS.gene34373 | 0.81797 | 2.50E-52 | -1.69E-46 |
| MS.gene053403 | MS.gene35459 | 0.80572 | 1.16E-49 | -1.69E-46 |
| MS.gene053403 | MS.gene35460 | 0.820867 | 5.47E-53 | -1.69E-46 |
| MS.gene053403 | MS.gene35597 | 0.810696 | 1.01E-50 | -1.69E-46 |
| MS.gene053403 | MS.gene37192 | 0.80069 | 1.28E-48 | -1.69E-46 |
| MS.gene053403 | MS.gene38435 | 0.82031 | 7.34E-53 | -1.69E-46 |
| MS.gene053403 | MS.gene40172 | 0.813851 | 2.08E-51 | -1.69E-46 |
| MS.gene053403 | MS.gene40173 | 0.813923 | 2.00E-51 | -1.69E-46 |
| MS.gene053403 | MS.gene42080 | 0.814121 | 1.81E-51 | -1.69E-46 |
| MS.gene053403 | MS.gene43874 | 0.824426 | 8.12E-54 | -1.69E-46 |
| MS.gene053403 | MS.gene44712 | 0.813764 | 2.17E-51 | -1.69E-46 |
| MS.gene053403 | MS.gene44958 | 0.810629 | 1.05E-50 | -1.69E-46 |
| MS.gene053403 | MS.gene45893 | 0.820832 | 5.57E-53 | -1.69E-46 |
| MS.gene053403 | MS.gene46027 | 0.804727 | 1.88E-49 | -1.69E-46 |
| MS.gene053403 | MS.gene46433 | 0.813228 | 2.85E-51 | -1.69E-46 |
| MS.gene053403 | MS.gene47719 | 0.800828 | 1.20E-48 | -1.69E-46 |
| MS.gene053403 | MS.gene48805 | 0.811961 | 5.39E-51 | -1.69E-46 |
| MS.gene053403 | MS.gene48806 | 0.817308 | 3.53E-52 | -1.69E-46 |
| MS.gene053403 | MS.gene48807 | 0.807249 | 5.54E-50 | -1.69E-46 |
| MS.gene053403 | MS.gene48885 | 0.831785 | 1.37E-55 | -1.69E-46 |
| MS.gene053403 | MS.gene50279 | 0.858114 | 1.03E-62 | -1.69E-46 |
| MS.gene053403 | MS.gene50786 | 0.800148 | 1.65E-48 | -1.69E-46 |
| MS.gene053403 | MS.gene51523 | 0.824433 | 8.09E-54 | -1.69E-46 |
| MS.gene053403 | MS.gene52370 | 0.813521 | 2.45E-51 | -1.69E-46 |
| MS.gene053403 | MS.gene54029 | 0.847718 | 9.69E-60 | -1.69E-46 |
| MS.gene053403 | MS.gene54574 | 0.800862 | 1.18E-48 | -1.69E-46 |
| MS.gene053403 | MS.gene55012 | 0.807839 | 4.15E-50 | -1.69E-46 |
| MS.gene053403 | MS.gene56509 | 0.811899 | 5.56E-51 | -1.69E-46 |
| MS.gene053403 | MS.gene58107 | 0.806981 | 6.32E-50 | -1.69E-46 |
| MS.gene053403 | MS.gene59002 | 0.810787 | 9.69E-51 | -1.69E-46 |
| MS.gene053403 | MS.gene59003 | 0.805058 | 1.60E-49 | -1.69E-46 |
| MS.gene053403 | MS.gene60803 | 0.828062 | 1.11E-54 | -1.69E-46 |
| MS.gene053403 | MS.gene60804 | 0.814786 | 1.29E-51 | -1.69E-46 |
| MS.gene053403 | MS.gene61142 | 0.813217 | 2.86E-51 | -1.69E-46 |
| MS.gene053403 | MS.gene61143 | 0.818898 | 1.54E-52 | -1.69E-46 |
| MS.gene053403 | MS.gene63914 | 0.815212 | 1.04E-51 | -1.69E-46 |
| MS.gene053403 | MS.gene65040 | 0.810079 | 1.38E-50 | -1.69E-46 |
| MS.gene053403 | MS.gene65497 | 0.883633 | 3.80E-71 | -1.69E-46 |
| MS.gene053403 | MS.gene65500 | 0.857763 | 1.31E-62 | -1.69E-46 |
| MS.gene053403 | MS.gene65823 | 0.808512 | 2.99E-50 | -1.69E-46 |
| MS.gene053403 | MS.gene65834 | 0.821781 | 3.36E-53 | -1.69E-46 |
| MS.gene053403 | MS.gene65948 | 0.899725 | 1.49E-77 | -1.69E-46 |
| MS.gene053403 | MS.gene65951 | 0.862739 | 4.09E-64 | -1.69E-46 |
| MS.gene053403 | MS.gene68453 | 0.801937 | 7.11E-49 | -1.69E-46 |
| MS.gene053403 | MS.gene69966 | 0.822628 | 2.14E-53 | -1.69E-46 |
| MS.gene053403 | MS.gene70253 | 0.803707 | 3.07E-49 | -1.69E-46 |
| MS.gene053403 | MS.gene71251 | 0.814111 | 1.82E-51 | -1.69E-46 |
| MS.gene053403 | MS.gene75472 | 0.825875 | 3.69E-54 | -1.69E-46 |
| MS.gene053403 | MS.gene76737 | 0.800904 | 1.16E-48 | -1.69E-46 |
| MS.gene053403 | MS.gene76738 | 0.81079 | 9.67E-51 | -1.69E-46 |
| MS.gene053403 | MS.gene77032 | 0.803088 | 4.12E-49 | -1.69E-46 |
| MS.gene053403 | MS.gene77033 | 0.802865 | 4.58E-49 | -1.69E-46 |
| MS.gene053403 | MS.gene79220 | 0.827208 | 1.78E-54 | -1.69E-46 |
| MS.gene053403 | MS.gene79221 | 0.806645 | 7.44E-50 | -1.69E-46 |
| MS.gene053403 | MS.gene79624 | 0.804558 | 2.04E-49 | -1.69E-46 |
| MS.gene053403 | MS.gene80293 | 0.810278 | 1.25E-50 | -1.69E-46 |
| MS.gene053403 | MS.gene80744 | 0.855312 | 6.86E-62 | -1.69E-46 |
| MS.gene053403 | MS.gene81349 | 0.817248 | 3.64E-52 | -1.69E-46 |
| MS.gene053403 | MS.gene82183 | 0.801405 | 9.15E-49 | -1.69E-46 |
| MS.gene053403 | MS.gene82244 | 0.817872 | 2.63E-52 | -1.69E-46 |
| MS.gene053403 | MS.gene82245 | 0.823072 | 1.69E-53 | -1.69E-46 |
| MS.gene053403 | MS.gene83329 | 0.818322 | 2.08E-52 | -1.69E-46 |
| MS.gene053403 | MS.gene85494 | 0.80411 | 2.53E-49 | -1.69E-46 |
| MS.gene053403 | MS.gene87056 | 0.847018 | 1.51E-59 | -1.69E-46 |
| MS.gene053403 | MS.gene87450 | 0.813391 | 2.62E-51 | -1.69E-46 |
| MS.gene053403 | MS.gene87750 | 0.835841 | 1.33E-56 | -1.69E-46 |
| MS.gene053403 | MS.gene91973 | 0.802392 | 5.73E-49 | -1.69E-46 |
| MS.gene053403 | MS.gene92334 | 0.80306 | 4.17E-49 | -1.69E-46 |
| MS.gene053403 | MS.gene92507 | 0.806937 | 6.45E-50 | -1.69E-46 |
| MS.gene053403 | MS.gene93632 | 0.806582 | 7.67E-50 | -1.69E-46 |
| MS.gene053403 | MS.gene95804 | 0.826592 | 2.49E-54 | -1.69E-46 |
| MS.gene053403 | MS.gene98322 | 0.811087 | 8.34E-51 | -1.69E-46 |
| MS.gene053403 | MS.gene99062 | 0.853138 | 2.91E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053403.t1 | MTR_1g043220 | 99.069 | 537 | 5 | 0 | 1 | 537 | 1 | 537 | 0.0 | 1092 |
| MS.gene053403.t1 | MTR_1g043290 | 98.308 | 532 | 9 | 0 | 1 | 532 | 1 | 532 | 0.0 | 1075 |
| MS.gene053403.t1 | MTR_1g043200 | 98.491 | 530 | 8 | 0 | 1 | 530 | 1 | 530 | 0.0 | 1073 |
| MS.gene053403.t1 | MTR_1g074930 | 85.009 | 527 | 79 | 0 | 1 | 527 | 1 | 527 | 0.0 | 946 |
| MS.gene053403.t1 | MTR_3g082700 | 78.543 | 508 | 108 | 1 | 4 | 511 | 5 | 511 | 0.0 | 839 |
| MS.gene053403.t1 | MTR_1g069935 | 75.382 | 524 | 125 | 2 | 4 | 527 | 5 | 524 | 0.0 | 821 |
| MS.gene053403.t1 | MTR_7g096870 | 75.188 | 532 | 128 | 2 | 4 | 535 | 5 | 532 | 0.0 | 816 |
| MS.gene053403.t1 | MTR_7g096880 | 76.772 | 508 | 112 | 2 | 4 | 511 | 5 | 506 | 0.0 | 798 |
| MS.gene053403.t1 | MTR_1g074940 | 75.734 | 511 | 106 | 4 | 4 | 511 | 5 | 500 | 0.0 | 790 |
| MS.gene053403.t1 | MTR_1g069930 | 68.482 | 514 | 159 | 2 | 4 | 517 | 5 | 515 | 0.0 | 743 |
| MS.gene053403.t1 | MTR_1g028600 | 62.121 | 528 | 185 | 5 | 5 | 532 | 3 | 515 | 0.0 | 646 |
| MS.gene053403.t1 | MTR_5g068140 | 58.165 | 545 | 201 | 6 | 1 | 528 | 1 | 535 | 0.0 | 618 |
| MS.gene053403.t1 | MTR_4g083960 | 54.307 | 534 | 218 | 11 | 1 | 528 | 1 | 514 | 0.0 | 536 |
| MS.gene053403.t1 | MTR_3g084110 | 24.512 | 461 | 278 | 18 | 68 | 515 | 69 | 472 | 4.51e-16 | 81.3 |
| MS.gene053403.t1 | MTR_7g005910 | 22.779 | 439 | 274 | 16 | 86 | 514 | 92 | 475 | 2.55e-14 | 75.9 |
| MS.gene053403.t1 | MTR_1g116660 | 21.364 | 440 | 274 | 15 | 89 | 514 | 97 | 478 | 3.42e-12 | 69.3 |
| MS.gene053403.t1 | MTR_7g446340 | 23.491 | 464 | 293 | 16 | 75 | 529 | 104 | 514 | 1.79e-11 | 67.0 |
| MS.gene053403.t1 | MTR_6g007340 | 23.491 | 464 | 293 | 16 | 75 | 529 | 104 | 514 | 1.79e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053403.t1 | AT5G43360 | 81.008 | 516 | 96 | 2 | 4 | 519 | 5 | 518 | 0.0 | 856 |
| MS.gene053403.t1 | AT5G43350 | 80.233 | 516 | 100 | 2 | 4 | 519 | 5 | 518 | 0.0 | 852 |
| MS.gene053403.t1 | AT3G54700 | 80.426 | 516 | 96 | 2 | 4 | 519 | 5 | 515 | 0.0 | 852 |
| MS.gene053403.t1 | AT3G54700 | 80.426 | 516 | 96 | 2 | 4 | 519 | 5 | 515 | 0.0 | 852 |
| MS.gene053403.t1 | AT2G38940 | 77.778 | 513 | 113 | 1 | 4 | 516 | 5 | 516 | 0.0 | 838 |
| MS.gene053403.t1 | AT2G32830 | 76.145 | 524 | 123 | 2 | 7 | 529 | 8 | 530 | 0.0 | 829 |
| MS.gene053403.t1 | AT5G43370 | 80.039 | 516 | 101 | 2 | 4 | 519 | 5 | 518 | 0.0 | 820 |
| MS.gene053403.t1 | AT5G43370 | 80.039 | 516 | 101 | 2 | 4 | 519 | 5 | 518 | 0.0 | 820 |
| MS.gene053403.t1 | AT5G43340 | 65.764 | 517 | 158 | 4 | 7 | 521 | 9 | 508 | 0.0 | 705 |
| MS.gene053403.t1 | AT1G76430 | 48.889 | 540 | 251 | 11 | 4 | 534 | 3 | 526 | 8.35e-173 | 499 |
| MS.gene053403.t1 | AT1G20860 | 50.095 | 529 | 246 | 9 | 5 | 529 | 3 | 517 | 3.32e-170 | 492 |
| MS.gene053403.t1 | AT1G20860 | 50.095 | 529 | 246 | 9 | 5 | 529 | 55 | 569 | 9.75e-170 | 493 |
| MS.gene053403.t1 | AT4G08878 | 64.368 | 261 | 90 | 2 | 30 | 290 | 13 | 270 | 1.74e-113 | 338 |
| MS.gene053403.t1 | AT4G08895 | 55.714 | 140 | 30 | 1 | 321 | 460 | 23 | 130 | 8.40e-47 | 160 |
| MS.gene053403.t1 | AT2G43330 | 23.077 | 468 | 275 | 17 | 68 | 514 | 72 | 475 | 2.15e-11 | 66.6 |
Find 111 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTCTTCTTTGCTAATTT+TGG | 0.173620 | 1.4:+27580960 | MS.gene053403:CDS |
| CACTTTGTTTCTTTAGGTTT+TGG | 0.183884 | 1.4:+27580106 | MS.gene053403:CDS |
| GTTGCTTCAGGACTCTCTTT+TGG | 0.216739 | 1.4:+27580057 | MS.gene053403:CDS |
| GCAGTACTGTTCCGGGTTAC+TGG | 0.231450 | 1.4:+27580784 | MS.gene053403:CDS |
| TGCGTTGTGCAGTACTGTTC+CGG | 0.245438 | 1.4:+27580776 | MS.gene053403:CDS |
| GCCGTGTAACGAGCGGTTTC+TGG | 0.257283 | 1.4:-27580432 | None:intergenic |
| AATTATTCTTTGGTTGGCTT+GGG | 0.264750 | 1.4:+27579974 | MS.gene053403:CDS |
| TGGTTGGCTTGGGGACAAAA+TGG | 0.266103 | 1.4:+27579984 | MS.gene053403:CDS |
| TATATTTGATCACAAATATA+AGG | 0.273690 | 1.4:+27580284 | MS.gene053403:CDS |
| GTGGTTTGTTCTGTTGCTTC+AGG | 0.274743 | 1.4:+27580045 | MS.gene053403:CDS |
| CTAGCTGGCCAATTATTCTT+TGG | 0.275331 | 1.4:+27579964 | MS.gene053403:CDS |
| TCTCTTGTCACAAAGTTGTT+AGG | 0.275819 | 1.4:+27579847 | MS.gene053403:CDS |
| TGGCAACACTTTGTTTCTTT+AGG | 0.286390 | 1.4:+27580100 | MS.gene053403:CDS |
| GGTGCAATTGTTGGTGCATT+TGG | 0.288648 | 1.4:+27581077 | MS.gene053403:CDS |
| GATCCTACCAAGACTGATAA+AGG | 0.289352 | 1.4:+27581125 | MS.gene053403:CDS |
| TGCCTCAATTTGATTATGTT+TGG | 0.291088 | 1.4:+27580346 | MS.gene053403:CDS |
| TTCACTACAATTGTGATTGC+TGG | 0.295521 | 1.4:+27579784 | MS.gene053403:CDS |
| CAAGCCAACCAAAGAATAAT+TGG | 0.296172 | 1.4:-27579972 | None:intergenic |
| CAATTATTCTTTGGTTGGCT+TGG | 0.296970 | 1.4:+27579973 | MS.gene053403:CDS |
| ACACTTGGTGGAAGTGTTCC+TGG | 0.300768 | 1.4:-27579904 | None:intergenic |
| AGCAAGGAAGAGAATAGAAT+TGG | 0.305550 | 1.4:+27580915 | MS.gene053403:CDS |
| CGACATGGTTGGGCTTTGTT+TGG | 0.309208 | 1.4:+27580600 | MS.gene053403:CDS |
| TCAGTCATGTCTGGAGAATT+AGG | 0.311053 | 1.4:+27579718 | None:intergenic |
| AGTGTTGCCATAACACTCTT+TGG | 0.315160 | 1.4:-27580087 | None:intergenic |
| ACAACAAATGTTGTAGCATT+TGG | 0.339412 | 1.4:-27580984 | None:intergenic |
| GTTCCTGGTCTTGTTGGATT+TGG | 0.357998 | 1.4:-27579889 | None:intergenic |
| CTTGGTGTTATCAACTTTGT+TGG | 0.363864 | 1.4:+27581188 | MS.gene053403:CDS |
| GCGTTGTGCAGTACTGTTCC+GGG | 0.367157 | 1.4:+27580777 | MS.gene053403:CDS |
| TCCTTCTTGCTCGGTGGCCT+CGG | 0.375458 | 1.4:-27581291 | None:intergenic |
| AAAGGGTATCCAACCGGTAT+TGG | 0.377035 | 1.4:+27581143 | MS.gene053403:CDS |
| GTTACTGGTGTTGCACTTGT+TGG | 0.381988 | 1.4:+27579937 | MS.gene053403:CDS |
| AGTGTTCAATCAGCTGTTAC+TGG | 0.388463 | 1.4:+27579922 | MS.gene053403:CDS |
| GGAAGTGTTCCTGGTCTTGT+TGG | 0.393755 | 1.4:-27579895 | None:intergenic |
| AAGGGTATCCAACCGGTATT+GGG | 0.400842 | 1.4:+27581144 | MS.gene053403:CDS |
| CTCTTGTCACAAAGTTGTTA+GGG | 0.407797 | 1.4:+27579848 | MS.gene053403:CDS |
| TCCTTGCTCCAATGATCATA+TGG | 0.411149 | 1.4:-27580900 | None:intergenic |
| TGGAGACTTATTCTTATGTT+CGG | 0.411605 | 1.4:+27580366 | MS.gene053403:CDS |
| CTGGCCAATTATTCTTTGGT+TGG | 0.426319 | 1.4:+27579968 | MS.gene053403:CDS |
| ATTCGCAGCACGACATGGTT+GGG | 0.435527 | 1.4:+27580590 | MS.gene053403:CDS |
| CAATCACAATTGTAGTGAAA+TGG | 0.437274 | 1.4:-27579780 | None:intergenic |
| TTGCCATACCATATGATCAT+TGG | 0.440480 | 1.4:+27580892 | MS.gene053403:CDS |
| AGCTGCAGCGGATATGTCTA+AGG | 0.440556 | 1.4:+27580479 | MS.gene053403:CDS |
| TGTTTGGAACATGCAGTACT+TGG | 0.440697 | 1.4:+27580616 | MS.gene053403:CDS |
| TCGTTTCGCTATTCAAATGA+TGG | 0.440848 | 1.4:+27580836 | MS.gene053403:CDS |
| GAACCGCGGTCCTTCTTGCT+CGG | 0.441123 | 1.4:-27581300 | None:intergenic |
| TTGGTGTTATCAACTTTGTT+GGG | 0.442467 | 1.4:+27581189 | MS.gene053403:CDS |
| GTAACAAATTCAGTCATGTC+TGG | 0.451043 | 1.4:+27579709 | None:intergenic |
| TTTACTTGTGCCGGAATCAA+AGG | 0.452241 | 1.4:+27581223 | MS.gene053403:CDS |
| TGGATACCCTTTATCAGTCT+TGG | 0.453429 | 1.4:-27581132 | None:intergenic |
| GGTTGGCTTGGGGACAAAAT+GGG | 0.456779 | 1.4:+27579985 | MS.gene053403:CDS |
| TGGTTTAACTCTTATTCTCA+TGG | 0.457780 | 1.4:+27580023 | MS.gene053403:CDS |
| TGCTACAACATTTGTTGTAC+CGG | 0.469717 | 1.4:+27580989 | MS.gene053403:CDS |
| TCAGCTGCTGCAGGAAAGGC+AGG | 0.471662 | 1.4:+27581056 | MS.gene053403:CDS |
| AAGAACTCTCTTATCATGCT+TGG | 0.472490 | 1.4:+27581170 | MS.gene053403:CDS |
| AGAGTTGAGTGGAGAGAACG+AGG | 0.476579 | 1.4:+27581259 | MS.gene053403:CDS |
| CATGGAATCTCAGCTGCTGC+AGG | 0.483171 | 1.4:+27581047 | MS.gene053403:CDS |
| CAGCTGCTTTGACGTACTAC+TGG | 0.485410 | 1.4:+27580397 | MS.gene053403:CDS |
| CAGTAGTACGTCAAAGCAGC+TGG | 0.487577 | 1.4:-27580396 | None:intergenic |
| TTCTTAATCCCAATACCGGT+TGG | 0.488319 | 1.4:-27581152 | None:intergenic |
| GCACTTGTTGGAACACTAGC+TGG | 0.493587 | 1.4:+27579949 | MS.gene053403:CDS |
| GCAAGGAAGAGAATAGAATT+GGG | 0.494872 | 1.4:+27580916 | MS.gene053403:CDS |
| ATCCTACCAAGACTGATAAA+GGG | 0.497221 | 1.4:+27581126 | MS.gene053403:CDS |
| TACAATTGTGATTGCTGGAA+TGG | 0.498880 | 1.4:+27579789 | MS.gene053403:CDS |
| AATTCGCAGCACGACATGGT+TGG | 0.501532 | 1.4:+27580589 | MS.gene053403:CDS |
| ATTATTCTTTGGTTGGCTTG+GGG | 0.503981 | 1.4:+27579975 | MS.gene053403:CDS |
| CGTTTCGCTATTCAAATGAT+GGG | 0.506889 | 1.4:+27580837 | MS.gene053403:CDS |
| ACAATTGTGATTGCTGGAAT+GGG | 0.509483 | 1.4:+27579790 | MS.gene053403:CDS |
| ATCAAGTCCAAAGAGTGTTA+TGG | 0.512765 | 1.4:+27580080 | MS.gene053403:CDS |
| GGCACTAACAATGATGCAGC+TGG | 0.513729 | 1.4:-27580327 | None:intergenic |
| TTACTTGTGCCGGAATCAAA+GGG | 0.516902 | 1.4:+27581224 | MS.gene053403:CDS |
| AGAGTTCTTAATCCCAATAC+CGG | 0.517475 | 1.4:-27581156 | None:intergenic |
| GGTAGCGTTTATCGATTACA+TGG | 0.520286 | 1.4:+27580812 | MS.gene053403:CDS |
| AATCTCAGCTGCTGCAGGAA+AGG | 0.521693 | 1.4:+27581052 | MS.gene053403:CDS |
| TGGAATTGTTGCTTTGATTG+TGG | 0.522228 | 1.4:+27580257 | MS.gene053403:CDS |
| GTAACAGCTGATTGAACACT+TGG | 0.522608 | 1.4:-27579919 | None:intergenic |
| AGTGATAAAAGGAATAGTTA+TGG | 0.524232 | 1.4:+27580552 | MS.gene053403:CDS |
| ACTGATAAAGGGTATCCAAC+CGG | 0.524868 | 1.4:+27581137 | MS.gene053403:CDS |
| AGGTTAAGGTCTACTTGTCA+TGG | 0.528893 | 1.4:+27581029 | MS.gene053403:CDS |
| GAACGAGGGAGAAGGTGCCG+AGG | 0.534515 | 1.4:+27581274 | MS.gene053403:CDS |
| GTTATGCACTTTACTTGTGC+CGG | 0.539506 | 1.4:+27581214 | MS.gene053403:CDS |
| GACATGATTGTAGCTGAAAG+AGG | 0.545050 | 1.4:-27580156 | None:intergenic |
| CTCCAAACATAATCAAATTG+AGG | 0.545090 | 1.4:-27580348 | None:intergenic |
| TGTTCCGGGTTACTGGTTCA+CGG | 0.545707 | 1.4:+27580791 | MS.gene053403:CDS |
| AGTTGAACTTGAAGTTGAAG+AGG | 0.547307 | 1.4:+27580509 | MS.gene053403:CDS |
| AGTGGAGAGAACGAGGGAGA+AGG | 0.555943 | 1.4:+27581266 | MS.gene053403:CDS |
| ACTTGAAGTTGAAGAGGAGA+AGG | 0.556695 | 1.4:+27580515 | MS.gene053403:CDS |
| GGAATCAAAGGGAAAATCGT+TGG | 0.559818 | 1.4:+27581235 | MS.gene053403:CDS |
| GCCAGAAACCGCTCGTTACA+CGG | 0.562042 | 1.4:+27580431 | MS.gene053403:CDS |
| GGAAAGGCAGGTGCAATTGT+TGG | 0.566386 | 1.4:+27581068 | MS.gene053403:CDS |
| GCCGAGGCCACCGAGCAAGA+AGG | 0.568635 | 1.4:+27581290 | MS.gene053403:CDS |
| ACAGCTGATTGAACACTTGG+TGG | 0.569082 | 1.4:-27579916 | None:intergenic |
| CGCAATTGGATGGATCCCTC+CGG | 0.569595 | 1.4:+27580695 | MS.gene053403:CDS |
| TTTAACTCTTATTCTCATGG+TGG | 0.573974 | 1.4:+27580026 | MS.gene053403:CDS |
| GAACCAAATCCAACAAGACC+AGG | 0.579480 | 1.4:+27579886 | MS.gene053403:CDS |
| GCTCCAATGATCATATGGTA+TGG | 0.582429 | 1.4:-27580895 | None:intergenic |
| AGAAATGAATGCAATTCATG+AGG | 0.592937 | 1.4:+27580722 | MS.gene053403:CDS |
| CAAGTAGACCTTAACCTAGC+CGG | 0.597095 | 1.4:-27581023 | None:intergenic |
| GAGTTGAGTGGAGAGAACGA+GGG | 0.600479 | 1.4:+27581260 | MS.gene053403:CDS |
| ACCATATGATCATTGGAGCA+AGG | 0.612455 | 1.4:+27580899 | MS.gene053403:CDS |
| TACCCTTTATCAGTCTTGGT+AGG | 0.618148 | 1.4:-27581128 | None:intergenic |
| TAGTTATGGCTTGTTCAGCA+AGG | 0.618878 | 1.4:+27580566 | MS.gene053403:CDS |
| ACATGATTGTAGCTGAAAGA+GGG | 0.622142 | 1.4:-27580155 | None:intergenic |
| CCGCGGTCCTTCTTGCTCGG+TGG | 0.622837 | 1.4:-27581297 | None:intergenic |
| GAACGCGAAACAAGCTGCAG+CGG | 0.635840 | 1.4:+27580467 | MS.gene053403:CDS |
| AAATCGTTGGAAGAGTTGAG+TGG | 0.638926 | 1.4:+27581248 | MS.gene053403:CDS |
| AAGGAATTCGCAGCACGACA+TGG | 0.645567 | 1.4:+27580585 | MS.gene053403:CDS |
| GCTACCGTGAACCAGTAACC+CGG | 0.646440 | 1.4:-27580795 | None:intergenic |
| AACAAGAGCCGTGTAACGAG+CGG | 0.663708 | 1.4:-27580439 | None:intergenic |
| AGTGCTAAATGCACTTGATG+TGG | 0.688145 | 1.4:+27579741 | MS.gene053403:CDS |
| GTAGCGTTTATCGATTACAT+GGG | 0.697486 | 1.4:+27580813 | MS.gene053403:CDS |
| CCACCGAGCAAGAAGGACCG+CGG | 0.718090 | 1.4:+27581297 | MS.gene053403:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTTGATCACAAATATA+AGG | + | chr1.4:27580284-27580303 | MS.gene053403:CDS | 15.0% |
| !! | AAAAAATGACTAGTGATAAA+AGG | + | chr1.4:27580541-27580560 | MS.gene053403:CDS | 20.0% |
| ! | AGTGATAAAAGGAATAGTTA+TGG | + | chr1.4:27580552-27580571 | MS.gene053403:CDS | 25.0% |
| ! | TATGCTAACAAAAAAACTAG+AGG | + | chr1.4:27580183-27580202 | MS.gene053403:CDS | 25.0% |
| !! | ACATTCTTCTTTGCTAATTT+TGG | + | chr1.4:27580960-27580979 | MS.gene053403:CDS | 25.0% |
| !! | ATGGGAAGAAAAAAAGTATA+TGG | + | chr1.4:27580003-27580022 | MS.gene053403:CDS | 25.0% |
| ACAACAAATGTTGTAGCATT+TGG | - | chr1.4:27580987-27581006 | None:intergenic | 30.0% | |
| AGAAATGAATGCAATTCATG+AGG | + | chr1.4:27580722-27580741 | MS.gene053403:CDS | 30.0% | |
| CAATCACAATTGTAGTGAAA+TGG | - | chr1.4:27579783-27579802 | None:intergenic | 30.0% | |
| CTCCAAACATAATCAAATTG+AGG | - | chr1.4:27580351-27580370 | None:intergenic | 30.0% | |
| TGCCTCAATTTGATTATGTT+TGG | + | chr1.4:27580346-27580365 | MS.gene053403:CDS | 30.0% | |
| TGGAGACTTATTCTTATGTT+CGG | + | chr1.4:27580366-27580385 | MS.gene053403:CDS | 30.0% | |
| TGGTTTAACTCTTATTCTCA+TGG | + | chr1.4:27580023-27580042 | MS.gene053403:CDS | 30.0% | |
| TTTAACTCTTATTCTCATGG+TGG | + | chr1.4:27580026-27580045 | MS.gene053403:CDS | 30.0% | |
| ! | ATTGCATTCATTTCTTTTGC+CGG | - | chr1.4:27580717-27580736 | None:intergenic | 30.0% |
| ! | TAGTCAGAATCTTTTCCAAA+AGG | + | chr1.4:27580662-27580681 | MS.gene053403:CDS | 30.0% |
| !! | AATTATTCTTTGGTTGGCTT+GGG | + | chr1.4:27579974-27579993 | MS.gene053403:CDS | 30.0% |
| !! | CACTTTGTTTCTTTAGGTTT+TGG | + | chr1.4:27580106-27580125 | MS.gene053403:CDS | 30.0% |
| !! | TTGGTGTTATCAACTTTGTT+GGG | + | chr1.4:27581189-27581208 | MS.gene053403:CDS | 30.0% |
| AAGAACTCTCTTATCATGCT+TGG | + | chr1.4:27581170-27581189 | MS.gene053403:CDS | 35.0% | |
| ACAATTGTGATTGCTGGAAT+GGG | + | chr1.4:27579790-27579809 | MS.gene053403:CDS | 35.0% | |
| ACATGATTGTAGCTGAAAGA+GGG | - | chr1.4:27580158-27580177 | None:intergenic | 35.0% | |
| AGAGTTCTTAATCCCAATAC+CGG | - | chr1.4:27581159-27581178 | None:intergenic | 35.0% | |
| AGCAAGGAAGAGAATAGAAT+TGG | + | chr1.4:27580915-27580934 | MS.gene053403:CDS | 35.0% | |
| AGTTGAACTTGAAGTTGAAG+AGG | + | chr1.4:27580509-27580528 | MS.gene053403:CDS | 35.0% | |
| ATCCTACCAAGACTGATAAA+GGG | + | chr1.4:27581126-27581145 | MS.gene053403:CDS | 35.0% | |
| CAAGCCAACCAAAGAATAAT+TGG | - | chr1.4:27579975-27579994 | None:intergenic | 35.0% | |
| CGTTTCGCTATTCAAATGAT+GGG | + | chr1.4:27580837-27580856 | MS.gene053403:CDS | 35.0% | |
| CTCTTGTCACAAAGTTGTTA+GGG | + | chr1.4:27579848-27579867 | MS.gene053403:CDS | 35.0% | |
| GCAAGGAAGAGAATAGAATT+GGG | + | chr1.4:27580916-27580935 | MS.gene053403:CDS | 35.0% | |
| TACAATTGTGATTGCTGGAA+TGG | + | chr1.4:27579789-27579808 | MS.gene053403:CDS | 35.0% | |
| TCGTTTCGCTATTCAAATGA+TGG | + | chr1.4:27580836-27580855 | MS.gene053403:CDS | 35.0% | |
| TCTCTTGTCACAAAGTTGTT+AGG | + | chr1.4:27579847-27579866 | MS.gene053403:CDS | 35.0% | |
| TTCACTACAATTGTGATTGC+TGG | + | chr1.4:27579784-27579803 | MS.gene053403:CDS | 35.0% | |
| TTGCCATACCATATGATCAT+TGG | + | chr1.4:27580892-27580911 | MS.gene053403:CDS | 35.0% | |
| ! | AACGATTTTCCCTTTGATTC+CGG | - | chr1.4:27581236-27581255 | None:intergenic | 35.0% |
| ! | CAATTATTCTTTGGTTGGCT+TGG | + | chr1.4:27579973-27579992 | MS.gene053403:CDS | 35.0% |
| ! | GTAGCGTTTATCGATTACAT+GGG | + | chr1.4:27580813-27580832 | MS.gene053403:CDS | 35.0% |
| ! | TGGCAACACTTTGTTTCTTT+AGG | + | chr1.4:27580100-27580119 | MS.gene053403:CDS | 35.0% |
| ! | TTGCGCTAAAAATGTCCTTT+TGG | - | chr1.4:27580680-27580699 | None:intergenic | 35.0% |
| !! | ATCAAGTCCAAAGAGTGTTA+TGG | + | chr1.4:27580080-27580099 | MS.gene053403:CDS | 35.0% |
| !! | ATGCAAGGTTTTGGTATCTT+AGG | + | chr1.4:27580231-27580250 | MS.gene053403:CDS | 35.0% |
| !! | ATGCAGTACTTGGTTTTTGT+TGG | + | chr1.4:27580626-27580645 | MS.gene053403:CDS | 35.0% |
| !! | ATTATTCTTTGGTTGGCTTG+GGG | + | chr1.4:27579975-27579994 | MS.gene053403:CDS | 35.0% |
| !! | CTTGGTGTTATCAACTTTGT+TGG | + | chr1.4:27581188-27581207 | MS.gene053403:CDS | 35.0% |
| !! | GTTTTTGCTATGCAAGGTTT+TGG | + | chr1.4:27580222-27580241 | MS.gene053403:CDS | 35.0% |
| !! | TGCTACAACATTTGTTGTAC+CGG | + | chr1.4:27580989-27581008 | MS.gene053403:CDS | 35.0% |
| !! | TGGAATTGTTGCTTTGATTG+TGG | + | chr1.4:27580257-27580276 | MS.gene053403:CDS | 35.0% |
| !!! | AAGGACATTTTTAGCGCAAT+TGG | + | chr1.4:27580681-27580700 | MS.gene053403:CDS | 35.0% |
| !!! | ACATTTTTAGCGCAATTGGA+TGG | + | chr1.4:27580685-27580704 | MS.gene053403:CDS | 35.0% |
| !!! | TGTTTCTTTAGGTTTTGGCT+TGG | + | chr1.4:27580111-27580130 | MS.gene053403:CDS | 35.0% |
| !!! | TTTAGGTTTTGGCTTGGTTT+TGG | + | chr1.4:27580117-27580136 | MS.gene053403:CDS | 35.0% |
| !!! | TTTTGGCTTGGTTTTGGTAT+TGG | + | chr1.4:27580123-27580142 | MS.gene053403:CDS | 35.0% |
| AAATCGTTGGAAGAGTTGAG+TGG | + | chr1.4:27581248-27581267 | MS.gene053403:CDS | 40.0% | |
| ACCATATGATCATTGGAGCA+AGG | + | chr1.4:27580899-27580918 | MS.gene053403:CDS | 40.0% | |
| ACTTGAAGTTGAAGAGGAGA+AGG | + | chr1.4:27580515-27580534 | MS.gene053403:CDS | 40.0% | |
| AGGTTAAGGTCTACTTGTCA+TGG | + | chr1.4:27581029-27581048 | MS.gene053403:CDS | 40.0% | |
| AGTGCTAAATGCACTTGATG+TGG | + | chr1.4:27579741-27579760 | MS.gene053403:CDS | 40.0% | |
| AGTGTTCAATCAGCTGTTAC+TGG | + | chr1.4:27579922-27579941 | MS.gene053403:CDS | 40.0% | |
| AGTGTTGCCATAACACTCTT+TGG | - | chr1.4:27580090-27580109 | None:intergenic | 40.0% | |
| CTAGCTGGCCAATTATTCTT+TGG | + | chr1.4:27579964-27579983 | MS.gene053403:CDS | 40.0% | |
| CTGGCCAATTATTCTTTGGT+TGG | + | chr1.4:27579968-27579987 | MS.gene053403:CDS | 40.0% | |
| GACATGATTGTAGCTGAAAG+AGG | - | chr1.4:27580159-27580178 | None:intergenic | 40.0% | |
| GATCCTACCAAGACTGATAA+AGG | + | chr1.4:27581125-27581144 | MS.gene053403:CDS | 40.0% | |
| GCTCCAATGATCATATGGTA+TGG | - | chr1.4:27580898-27580917 | None:intergenic | 40.0% | |
| GGAATCAAAGGGAAAATCGT+TGG | + | chr1.4:27581235-27581254 | MS.gene053403:CDS | 40.0% | |
| GTAACAGCTGATTGAACACT+TGG | - | chr1.4:27579922-27579941 | None:intergenic | 40.0% | |
| GTTATGCACTTTACTTGTGC+CGG | + | chr1.4:27581214-27581233 | MS.gene053403:CDS | 40.0% | |
| TACCCTTTATCAGTCTTGGT+AGG | - | chr1.4:27581131-27581150 | None:intergenic | 40.0% | |
| TCCTTGCTCCAATGATCATA+TGG | - | chr1.4:27580903-27580922 | None:intergenic | 40.0% | |
| TGGATACCCTTTATCAGTCT+TGG | - | chr1.4:27581135-27581154 | None:intergenic | 40.0% | |
| TTACTTGTGCCGGAATCAAA+GGG | + | chr1.4:27581224-27581243 | MS.gene053403:CDS | 40.0% | |
| TTCTTAATCCCAATACCGGT+TGG | - | chr1.4:27581155-27581174 | None:intergenic | 40.0% | |
| TTTACTTGTGCCGGAATCAA+AGG | + | chr1.4:27581223-27581242 | MS.gene053403:CDS | 40.0% | |
| ! | AGATTTTTCCGGCTAGGTTA+AGG | + | chr1.4:27581015-27581034 | MS.gene053403:CDS | 40.0% |
| ! | AGCTGGATTTTCTTCAAAGG+TGG | - | chr1.4:27580313-27580332 | None:intergenic | 40.0% |
| ! | CATTCATTTCTTTTGCCGGA+GGG | - | chr1.4:27580713-27580732 | None:intergenic | 40.0% |
| ! | GCTGGATTTTCTTCAAAGGT+GGG | - | chr1.4:27580312-27580331 | None:intergenic | 40.0% |
| ! | GGTAGCGTTTATCGATTACA+TGG | + | chr1.4:27580812-27580831 | MS.gene053403:CDS | 40.0% |
| ! | TGCAGCTGGATTTTCTTCAA+AGG | - | chr1.4:27580316-27580335 | None:intergenic | 40.0% |
| ! | TGTTTGGAACATGCAGTACT+TGG | + | chr1.4:27580616-27580635 | MS.gene053403:CDS | 40.0% |
| !! | ACTGATAAAGGGTATCCAAC+CGG | + | chr1.4:27581137-27581156 | MS.gene053403:CDS | 40.0% |
| !! | CAAGGTTTTGGTATCTTAGG+TGG | + | chr1.4:27580234-27580253 | MS.gene053403:CDS | 40.0% |
| !! | TAGTTATGGCTTGTTCAGCA+AGG | + | chr1.4:27580566-27580585 | MS.gene053403:CDS | 40.0% |
| ACAGCTGATTGAACACTTGG+TGG | - | chr1.4:27579919-27579938 | None:intergenic | 45.0% | |
| CAAGTAGACCTTAACCTAGC+CGG | - | chr1.4:27581026-27581045 | None:intergenic | 45.0% | |
| GAACCAAATCCAACAAGACC+AGG | + | chr1.4:27579886-27579905 | MS.gene053403:CDS | 45.0% | |
| GGTGCAATTGTTGGTGCATT+TGG | + | chr1.4:27581077-27581096 | MS.gene053403:CDS | 45.0% | |
| ! | CAAGCTACATTTTCGAACCG+CGG | - | chr1.4:27581317-27581336 | None:intergenic | 45.0% |
| ! | GCATTCATTTCTTTTGCCGG+AGG | - | chr1.4:27580714-27580733 | None:intergenic | 45.0% |
| ! | GTTGCTTCAGGACTCTCTTT+TGG | + | chr1.4:27580057-27580076 | MS.gene053403:CDS | 45.0% |
| !! | AAAGGGTATCCAACCGGTAT+TGG | + | chr1.4:27581143-27581162 | MS.gene053403:CDS | 45.0% |
| !! | AAGGGTATCCAACCGGTATT+GGG | + | chr1.4:27581144-27581163 | MS.gene053403:CDS | 45.0% |
| !! | GGTTTTGGTATCTTAGGTGG+TGG | + | chr1.4:27580237-27580256 | MS.gene053403:CDS | 45.0% |
| !! | GTGGTTTGTTCTGTTGCTTC+AGG | + | chr1.4:27580045-27580064 | MS.gene053403:CDS | 45.0% |
| !! | GTTACTGGTGTTGCACTTGT+TGG | + | chr1.4:27579937-27579956 | MS.gene053403:CDS | 45.0% |
| !! | GTTCCTGGTCTTGTTGGATT+TGG | - | chr1.4:27579892-27579911 | None:intergenic | 45.0% |
| !! | TGTACCGGCAGAGATTTTTC+CGG | + | chr1.4:27581004-27581023 | MS.gene053403:CDS | 45.0% |
| !!! | GCTGCTGTTTTTGCTATGCA+AGG | + | chr1.4:27580216-27580235 | MS.gene053403:CDS | 45.0% |
| !!! | TGGCTTGGTTTTGGTATTGG+TGG | + | chr1.4:27580126-27580145 | MS.gene053403:CDS | 45.0% |
| AACAAGAGCCGTGTAACGAG+CGG | - | chr1.4:27580442-27580461 | None:intergenic | 50.0% | |
| AAGGAATTCGCAGCACGACA+TGG | + | chr1.4:27580585-27580604 | MS.gene053403:CDS | 50.0% | |
| AATCTCAGCTGCTGCAGGAA+AGG | + | chr1.4:27581052-27581071 | MS.gene053403:CDS | 50.0% | |
| AATTCGCAGCACGACATGGT+TGG | + | chr1.4:27580589-27580608 | MS.gene053403:CDS | 50.0% | |
| AGAGTTGAGTGGAGAGAACG+AGG | + | chr1.4:27581259-27581278 | MS.gene053403:CDS | 50.0% | |
| AGCTGCAGCGGATATGTCTA+AGG | + | chr1.4:27580479-27580498 | MS.gene053403:CDS | 50.0% | |
| ATTCGCAGCACGACATGGTT+GGG | + | chr1.4:27580590-27580609 | MS.gene053403:CDS | 50.0% | |
| CAGTAGTACGTCAAAGCAGC+TGG | - | chr1.4:27580399-27580418 | None:intergenic | 50.0% | |
| CTAGCCGGAAAAATCTCTGC+CGG | - | chr1.4:27581011-27581030 | None:intergenic | 50.0% | |
| GAGTTGAGTGGAGAGAACGA+GGG | + | chr1.4:27581260-27581279 | MS.gene053403:CDS | 50.0% | |
| GGAAAGGCAGGTGCAATTGT+TGG | + | chr1.4:27581068-27581087 | MS.gene053403:CDS | 50.0% | |
| GGCACTAACAATGATGCAGC+TGG | - | chr1.4:27580330-27580349 | None:intergenic | 50.0% | |
| TGCGTTGTGCAGTACTGTTC+CGG | + | chr1.4:27580776-27580795 | MS.gene053403:CDS | 50.0% | |
| ! | CAGCTGCTTTGACGTACTAC+TGG | + | chr1.4:27580397-27580416 | MS.gene053403:CDS | 50.0% |
| ! | GCACTTGTTGGAACACTAGC+TGG | + | chr1.4:27579949-27579968 | MS.gene053403:CDS | 50.0% |
| !! | ACACTTGGTGGAAGTGTTCC+TGG | - | chr1.4:27579907-27579926 | None:intergenic | 50.0% |
| !! | CGACATGGTTGGGCTTTGTT+TGG | + | chr1.4:27580600-27580619 | MS.gene053403:CDS | 50.0% |
| !! | GGAAGTGTTCCTGGTCTTGT+TGG | - | chr1.4:27579898-27579917 | None:intergenic | 50.0% |
| !! | GGTTGGCTTGGGGACAAAAT+GGG | + | chr1.4:27579985-27580004 | MS.gene053403:CDS | 50.0% |
| !! | TGGTTGGCTTGGGGACAAAA+TGG | + | chr1.4:27579984-27580003 | MS.gene053403:CDS | 50.0% |
| !! | TGTTCCGGGTTACTGGTTCA+CGG | + | chr1.4:27580791-27580810 | MS.gene053403:CDS | 50.0% |
| AGTGGAGAGAACGAGGGAGA+AGG | + | chr1.4:27581266-27581285 | MS.gene053403:CDS | 55.0% | |
| CATGGAATCTCAGCTGCTGC+AGG | + | chr1.4:27581047-27581066 | MS.gene053403:CDS | 55.0% | |
| CGCAATTGGATGGATCCCTC+CGG | + | chr1.4:27580695-27580714 | MS.gene053403:CDS | 55.0% | |
| GAACGCGAAACAAGCTGCAG+CGG | + | chr1.4:27580467-27580486 | MS.gene053403:CDS | 55.0% | |
| GCAGTACTGTTCCGGGTTAC+TGG | + | chr1.4:27580784-27580803 | MS.gene053403:CDS | 55.0% | |
| GCCAGAAACCGCTCGTTACA+CGG | + | chr1.4:27580431-27580450 | MS.gene053403:CDS | 55.0% | |
| GCGTTGTGCAGTACTGTTCC+GGG | + | chr1.4:27580777-27580796 | MS.gene053403:CDS | 55.0% | |
| GCTACCGTGAACCAGTAACC+CGG | - | chr1.4:27580798-27580817 | None:intergenic | 55.0% | |
| ! | CGGCAGAGATTTTTCCGGCT+AGG | + | chr1.4:27581009-27581028 | MS.gene053403:CDS | 55.0% |
| GAACCGCGGTCCTTCTTGCT+CGG | - | chr1.4:27581303-27581322 | None:intergenic | 60.0% | |
| GCCGTGTAACGAGCGGTTTC+TGG | - | chr1.4:27580435-27580454 | None:intergenic | 60.0% | |
| TCAGCTGCTGCAGGAAAGGC+AGG | + | chr1.4:27581056-27581075 | MS.gene053403:CDS | 60.0% | |
| ! | TCCTTCTTGCTCGGTGGCCT+CGG | - | chr1.4:27581294-27581313 | None:intergenic | 60.0% |
| CCACCGAGCAAGAAGGACCG+CGG | + | chr1.4:27581297-27581316 | MS.gene053403:CDS | 65.0% | |
| !! | GAACGAGGGAGAAGGTGCCG+AGG | + | chr1.4:27581274-27581293 | MS.gene053403:CDS | 65.0% |
| CCGCGGTCCTTCTTGCTCGG+TGG | - | chr1.4:27581300-27581319 | None:intergenic | 70.0% | |
| GCCGAGGCCACCGAGCAAGA+AGG | + | chr1.4:27581290-27581309 | MS.gene053403:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 27579724 | 27581337 | 27579724 | ID=MS.gene053403 |
| chr1.4 | mRNA | 27579724 | 27581337 | 27579724 | ID=MS.gene053403.t1;Parent=MS.gene053403 |
| chr1.4 | exon | 27579724 | 27581337 | 27579724 | ID=MS.gene053403.t1.exon1;Parent=MS.gene053403.t1 |
| chr1.4 | CDS | 27579724 | 27581337 | 27579724 | ID=cds.MS.gene053403.t1;Parent=MS.gene053403.t1 |
| Gene Sequence |
| Protein sequence |
