AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene61424

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61424.t1 MTR_3g023880 47.783 699 314 14 36 717 368 1032 0.0 627
MS.gene61424.t1 MTR_6g061840 46.714 700 321 16 36 716 210 876 0.0 593
MS.gene61424.t1 MTR_5g075310 45.272 698 291 14 36 716 165 788 0.0 580
MS.gene61424.t1 MTR_6g061840 48.187 579 262 12 36 599 210 765 5.73e-174 517
MS.gene61424.t1 MTR_1g023985 39.486 661 352 13 70 717 563 1188 4.52e-159 492
MS.gene61424.t1 MTR_1g114490 39.191 643 343 13 88 717 512 1119 5.61e-154 477
MS.gene61424.t1 MTR_8g041990 40.032 632 241 13 63 691 92 588 1.54e-146 442
MS.gene61424.t1 MTR_1g086640 36.628 688 366 21 62 717 42 691 2.52e-138 424
MS.gene61424.t1 MTR_3g052610 34.783 713 372 18 62 717 39 715 5.35e-130 402
MS.gene61424.t1 MTR_3g054400 35.358 642 366 13 65 691 356 963 1.30e-126 402
MS.gene61424.t1 MTR_2g098440 35.358 642 366 13 65 691 559 1166 1.40e-125 404
MS.gene61424.t1 MTR_2g015320 35.174 688 376 19 70 721 46 699 1.21e-124 387
MS.gene61424.t1 MTR_7g095080 34.444 720 367 16 68 717 39 723 1.74e-123 385
MS.gene61424.t1 MTR_4g485610 35.614 643 344 21 107 717 49 653 8.87e-121 377
MS.gene61424.t1 MTR_6g061840 46.717 396 181 7 36 421 210 585 7.66e-111 348
MS.gene61424.t1 MTR_8g080240 32.087 642 376 16 77 691 4 612 1.61e-105 336
MS.gene61424.t1 MTR_8g080240 32.087 642 376 16 77 691 4 612 2.73e-105 337
MS.gene61424.t1 MTR_8g080240 33.935 554 328 11 77 617 4 532 6.76e-103 327
MS.gene61424.t1 MTR_4g094992 33.594 512 287 16 240 717 25 517 8.63e-79 261
MS.gene61424.t1 MTR_3g014030 30.366 573 341 16 70 616 256 796 6.19e-63 229
MS.gene61424.t1 MTR_3g086770 28.253 584 369 14 53 615 242 796 5.15e-59 217
MS.gene61424.t1 MTR_0267s0070 30.474 548 322 17 95 616 937 1451 4.63e-57 211
MS.gene61424.t1 MTR_1543s0010 36.162 271 161 6 336 598 12 278 2.18e-45 164
MS.gene61424.t1 MTR_4g023590 30.961 281 147 5 69 319 264 527 1.89e-35 145
MS.gene61424.t1 MTR_4g023590 38.000 200 111 5 337 524 690 888 1.64e-27 120
MS.gene61424.t1 MTR_3g055020 35.468 203 125 4 405 605 63 261 5.28e-33 133
MS.gene61424.t1 MTR_4g134790 26.490 604 339 22 74 580 602 1197 8.06e-31 130
MS.gene61424.t1 MTR_4g120070 38.000 200 111 5 337 524 616 814 1.51e-27 120
MS.gene61424.t1 MTR_8g045110 27.528 356 227 13 306 639 116 462 4.12e-27 117
MS.gene61424.t1 MTR_1g109170 27.500 360 222 14 306 639 608 954 2.87e-26 115
MS.gene61424.t1 MTR_1g109170 32.420 219 124 3 68 282 320 518 2.55e-25 112
MS.gene61424.t1 MTR_1g109170 27.500 360 222 14 306 639 608 954 3.49e-26 115
MS.gene61424.t1 MTR_1g109170 32.420 219 124 3 68 282 320 518 2.80e-25 112
MS.gene61424.t1 MTR_1g056490 26.846 447 282 14 302 720 502 931 2.42e-25 112
MS.gene61424.t1 MTR_1g056490 28.125 224 137 5 64 283 218 421 7.21e-21 98.6
MS.gene61424.t1 MTR_8g106630 26.849 365 227 12 302 639 550 901 3.04e-25 112
MS.gene61424.t1 MTR_8g106630 29.278 263 139 6 25 283 244 463 8.98e-25 111
MS.gene61424.t1 MTR_8g044260 27.119 354 232 11 306 639 529 876 1.97e-24 110
MS.gene61424.t1 MTR_8g044260 29.545 220 131 4 68 283 240 439 2.09e-20 97.1
MS.gene61424.t1 MTR_5g090430 25.683 366 239 12 306 645 441 799 5.61e-23 105
MS.gene61424.t1 MTR_5g090430 24.887 221 151 5 67 283 64 273 3.30e-18 90.1
MS.gene61424.t1 MTR_5g090430 25.683 366 239 12 306 645 554 912 7.86e-23 105
MS.gene61424.t1 MTR_5g090430 24.887 221 151 5 67 283 177 386 3.97e-18 89.7
MS.gene61424.t1 MTR_4g134790 30.201 298 179 11 306 580 909 1200 7.94e-21 98.6
MS.gene61424.t1 MTR_4g134790 26.457 223 131 5 74 283 602 804 4.38e-16 83.2
MS.gene61424.t1 MTR_1g088590 23.399 406 233 12 70 428 23 397 3.22e-19 93.2
MS.gene61424.t1 MTR_6g086240 48.718 78 40 0 39 116 32 109 2.69e-18 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61424.t1 AT1G32490 45.923 699 328 12 36 717 359 1024 0.0 611
MS.gene61424.t1 AT1G32490 45.923 699 328 12 36 717 349 1014 0.0 611
MS.gene61424.t1 AT2G35340 46.132 698 327 12 36 717 222 886 0.0 609
MS.gene61424.t1 AT2G35340 46.132 698 327 12 36 717 360 1024 0.0 608
MS.gene61424.t1 AT4G16680 44.211 665 324 12 66 717 124 754 0.0 542
MS.gene61424.t1 AT3G26560 39.486 661 352 13 70 717 508 1133 1.16e-157 487
MS.gene61424.t1 AT3G62310 35.756 688 372 19 62 717 46 695 1.49e-138 424
MS.gene61424.t1 AT2G47250 35.871 683 364 21 69 717 57 699 1.28e-137 422
MS.gene61424.t1 AT5G13010 35.614 643 363 13 65 691 546 1153 4.06e-128 410
MS.gene61424.t1 AT4G18465 35.199 679 376 15 70 716 41 687 6.96e-127 393
MS.gene61424.t1 AT1G26370 33.333 717 368 19 62 703 20 701 1.51e-116 367
MS.gene61424.t1 AT4G16680 43.243 444 223 6 66 503 204 624 6.18e-113 355
MS.gene61424.t1 AT3G62310 36.779 503 273 9 62 541 46 526 2.65e-109 343
MS.gene61424.t1 AT3G62310 36.747 498 270 9 62 536 46 521 4.61e-108 340
MS.gene61424.t1 AT1G27900 32.777 659 383 16 76 703 3 632 4.13e-107 342
MS.gene61424.t1 AT1G27900 34.892 556 327 10 76 617 3 537 2.44e-105 332
MS.gene61424.t1 AT1G27900 34.892 556 327 10 76 617 3 537 4.63e-105 332
MS.gene61424.t1 AT5G10370 29.392 592 362 17 36 602 262 822 7.54e-65 234
MS.gene61424.t1 AT4G01020 28.495 558 346 15 67 602 293 819 1.92e-61 224
MS.gene61424.t1 AT2G35920 25.634 749 424 22 67 720 160 870 1.79e-54 202
MS.gene61424.t1 AT2G35920 25.871 746 426 23 67 720 250 960 1.91e-54 202
MS.gene61424.t1 AT2G35920 25.931 752 424 23 64 720 215 928 2.91e-54 202
MS.gene61424.t1 AT1G58050 23.874 666 372 21 68 625 588 1226 7.10e-40 159
MS.gene61424.t1 AT5G14900 32.653 245 145 8 481 717 36 268 8.47e-33 129
MS.gene61424.t1 AT1G33390 29.329 283 152 6 69 320 233 498 3.28e-32 134
MS.gene61424.t1 AT1G33390 36.190 210 116 7 319 518 633 834 2.91e-24 109
MS.gene61424.t1 AT1G33390 29.329 283 152 6 69 320 233 498 3.28e-32 134
MS.gene61424.t1 AT1G33390 36.190 210 116 7 319 518 633 834 2.91e-24 109
MS.gene61424.t1 AT2G01130 29.268 328 208 12 302 614 495 813 2.39e-26 116
MS.gene61424.t1 AT2G01130 29.091 220 132 3 68 283 211 410 3.07e-22 103
MS.gene61424.t1 AT2G01130 29.268 328 208 12 302 614 430 748 2.54e-26 116
MS.gene61424.t1 AT2G01130 29.091 220 132 3 68 283 146 345 3.28e-22 102
MS.gene61424.t1 AT1G48650 28.045 353 229 10 306 639 579 925 3.75e-26 115
MS.gene61424.t1 AT1G48650 33.645 214 118 4 74 283 296 489 4.39e-26 115
MS.gene61424.t1 AT1G48650 28.045 353 229 10 306 639 579 925 4.07e-26 115
MS.gene61424.t1 AT1G48650 33.645 214 118 4 74 283 296 489 4.89e-26 115
MS.gene61424.t1 AT5G04895 28.412 359 221 13 306 639 540 887 1.27e-25 114
MS.gene61424.t1 AT5G04895 31.019 216 125 4 72 283 255 450 5.15e-24 108
MS.gene61424.t1 AT1G58060 25.770 357 229 11 306 632 916 1266 3.32e-21 100
MS.gene61424.t1 AT1G58060 28.077 260 148 8 68 308 605 844 2.60e-18 90.5
MS.gene61424.t1 AT2G30800 24.541 436 279 18 306 705 209 630 6.11e-21 99.0
MS.gene61424.t1 AT2G30800 24.541 436 279 18 306 705 552 973 1.01e-20 98.2
MS.gene61424.t1 AT2G30800 25.877 228 141 6 63 283 173 379 1.09e-19 95.1
MS.gene61424.t1 AT1G06670 26.301 365 238 13 306 645 576 934 2.54e-20 97.1
MS.gene61424.t1 AT1G06670 24.779 226 142 5 68 286 208 412 1.93e-18 91.3
MS.gene61424.t1 AT1G06670 26.301 365 238 13 306 645 576 934 3.36e-20 96.7
MS.gene61424.t1 AT1G06670 24.779 226 142 5 68 286 208 412 2.12e-18 90.9
MS.gene61424.t1 AT2G47680 25.495 404 232 15 76 438 25 400 2.28e-19 94.0

Find 146 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAACATCCTTATCAATTTA+TGG 0.136072 6.3:-79704133 MS.gene61424:CDS
TAGGAAAATCCGTTTATATT+TGG 0.210148 6.3:-79703447 MS.gene61424:CDS
TCATCCTTCCCTTTAGAAAT+TGG 0.251448 6.3:+79705024 None:intergenic
AGGAATTTGTGAAGTCTTTC+CGG 0.264236 6.3:+79704945 None:intergenic
AAGCTTACACACCCAGCTTT+AGG 0.267420 6.3:-79703296 MS.gene61424:CDS
TCTGAAGTTATGGCTTTCTA+TGG 0.282818 6.3:-79703831 MS.gene61424:CDS
AGACTTCCTTGAGTTTATAA+AGG 0.287796 6.3:-79705148 MS.gene61424:CDS
TATAACAGAGCTCGCTGTTC+TGG 0.289623 6.3:-79704025 MS.gene61424:CDS
TATATGGTCTCCAACATTTC+CGG 0.294932 6.3:+79703565 None:intergenic
AACCATAAAATTAGAAGCTT+CGG 0.297466 6.3:-79704280 MS.gene61424:CDS
TCTGATAACATTGGATGAAC+TGG 0.325736 6.3:+79703734 None:intergenic
CTGGCGTTTAGCGACTTCTT+TGG 0.341804 6.3:-79704493 MS.gene61424:CDS
AACTAACCCTAAAAGAATAT+CGG 0.342499 6.3:+79704588 None:intergenic
ACCATAAAATTAGAAGCTTC+GGG 0.350989 6.3:-79704279 MS.gene61424:CDS
TTAATTATTGCAGGAGAAAC+AGG 0.354015 6.3:-79704970 MS.gene61424:CDS
TCATGAAATATAATCAATTC+AGG 0.358748 6.3:+79703209 None:intergenic
CGACATCTTTAGAGCTTGTA+AGG 0.360992 6.3:+79703396 None:intergenic
TCTTCTTCTTCTTTACCCTT+TGG 0.362270 6.3:+79703620 None:intergenic
AGAACTCTCGCCCGGCAAAA+TGG 0.370988 6.3:-79703511 MS.gene61424:CDS
AGAAGCTTCGGGATTGGAAT+TGG 0.372269 6.3:-79704268 MS.gene61424:CDS
AGGTCAGCACGCTCTACTTC+AGG 0.373717 6.3:+79703932 None:intergenic
TAAAGGGAAGGATGACTTGC+TGG 0.376286 6.3:-79705016 MS.gene61424:CDS
CTTCGCATACACCCTTGTTC+GGG 0.378754 6.3:-79703248 MS.gene61424:CDS
AGCTTACACACCCAGCTTTA+GGG 0.384144 6.3:-79703295 MS.gene61424:CDS
CATACACCCTTGTTCGGGAT+TGG 0.384256 6.3:-79703243 MS.gene61424:CDS
CGGGATTGGAATTGGTGAAT+TGG 0.387505 6.3:-79704260 MS.gene61424:CDS
TTGATATAATATATATCAAC+TGG 0.387767 6.3:+79704433 None:intergenic
CTTTATTCCATAAATTGATA+AGG 0.390819 6.3:+79704126 None:intergenic
GATTCGTTTGTGAAGATTGC+TGG 0.392232 6.3:-79703143 MS.gene61424:CDS
GACTTCCTTGAGTTTATAAA+GGG 0.392978 6.3:-79705147 MS.gene61424:CDS
AACTTCAGATCTGGTATGTC+AGG 0.396090 6.3:+79703845 None:intergenic
AATCAAATATTAATTATTGC+AGG 0.397097 6.3:-79704979 MS.gene61424:CDS
ATCCTATCTTGTAGATCAAT+AGG 0.397944 6.3:+79704211 None:intergenic
TTTATAAAGGGCGAAAAGAT+TGG 0.399913 6.3:-79705135 MS.gene61424:CDS
CAGCATGTTCAATGTCCTCT+TGG 0.400574 6.3:+79704314 None:intergenic
TGTAGATCCGGGACTCTTTG+TGG 0.403237 6.3:-79704098 MS.gene61424:CDS
GCTTCGCATACACCCTTGTT+CGG 0.403328 6.3:-79703249 MS.gene61424:CDS
AATGTTATCAGAAATGATAT+TGG 0.412869 6.3:-79703723 MS.gene61424:CDS
ATTACAAAATGCATAATAGC+TGG 0.415691 6.3:-79703368 MS.gene61424:CDS
GACTTTAACCGCTGAACAAA+TGG 0.418663 6.3:+79704852 None:intergenic
ATATCTTCTCTCCCTAAAGC+TGG 0.420101 6.3:+79703284 None:intergenic
TCGCATAAAGTTCGATGATC+GGG 0.422925 6.3:+79704464 None:intergenic
ATCAGAAATGATATTGGCTT+CGG 0.423395 6.3:-79703717 MS.gene61424:CDS
TCATGAAATGGAGGTTAAGC+TGG 0.424032 6.3:-79704827 MS.gene61424:CDS
CTTGGTCAACAAGGAAAACT+AGG 0.429587 6.3:+79704332 None:intergenic
AATAAAGTACGTTGTAGATC+CGG 0.437540 6.3:-79704110 MS.gene61424:CDS
ACAACCTTGCGAGACCCTTC+AGG 0.440625 6.3:+79704175 None:intergenic
AAAATTAGAAGCTTCGGGAT+TGG 0.443406 6.3:-79704274 MS.gene61424:CDS
ACTGAACTGGTTTCAGTTGT+GGG 0.448460 6.3:+79705822 None:intergenic
TAGCACAAGACCAACACTTA+AGG 0.448574 6.3:-79704554 MS.gene61424:CDS
GCTCGCTGTTCTGGAAGAAA+TGG 0.453461 6.3:-79704016 MS.gene61424:CDS
GGACTCTTTGTGGAGCAAAC+TGG 0.454867 6.3:-79704088 MS.gene61424:CDS
GCATATCAACCAAATATAAA+CGG 0.455181 6.3:+79703438 None:intergenic
GTGTTGTTCCTCAGAAATAT+AGG 0.455313 6.3:-79703899 MS.gene61424:CDS
AAGAATCTACCAATTTCTAA+AGG 0.457137 6.3:-79705033 MS.gene61424:CDS
GAATCTATGTAGTTAGCAAC+AGG 0.459077 6.3:+79704406 None:intergenic
AGAATCTACCAATTTCTAAA+GGG 0.460173 6.3:-79705032 MS.gene61424:CDS
CCTCAATATCTGCATGAGAA+AGG 0.460454 6.3:-79704925 MS.gene61424:CDS
CCTTTCTCATGCAGATATTG+AGG 0.460766 6.3:+79704925 None:intergenic
AGTCGTTGCGTGTGTGCAAC+CGG 0.462235 6.3:-79704887 MS.gene61424:CDS
ACAATACTTCATCACAGATT+AGG 0.465923 6.3:+79703101 None:intergenic
CACTGAACTGGTTTCAGTTG+TGG 0.466948 6.3:+79705821 None:intergenic
AATTCCTCCCATGTTCTCAA+TGG 0.467396 6.3:-79705856 None:intergenic
AATGATAAGATAACAAATAG+AGG 0.471597 6.3:-79703776 MS.gene61424:CDS
ACATACCAGATCTGAAGTTA+TGG 0.475513 6.3:-79703841 MS.gene61424:CDS
TGGAAGATAAGGCACTGAAC+TGG 0.476344 6.3:+79705809 None:intergenic
AAACTGCAACCTCGCATTGT+CGG 0.476948 6.3:+79703592 None:intergenic
GTGCATCTCTCCGAACCTCT+TGG 0.478159 6.3:-79704361 MS.gene61424:CDS
TTCCTATTGATCTACAAGAT+AGG 0.485258 6.3:-79704213 MS.gene61424:CDS
CTCAATATCTGCATGAGAAA+GGG 0.488825 6.3:-79704924 MS.gene61424:CDS
GAAAGCCATAACTTCAGATC+TGG 0.489351 6.3:+79703836 None:intergenic
TTTGATATGTCTCTCTTCAA+AGG 0.490472 6.3:-79704530 MS.gene61424:CDS
GGTTAAAGTCGCTCATGAAA+TGG 0.491929 6.3:-79704839 MS.gene61424:CDS
ACTGGTCAACAAGTTATTGT+TGG 0.493915 6.3:-79704070 MS.gene61424:CDS
GACAGATGAAAGGTTATTGT+GGG 0.496094 6.3:-79704686 MS.gene61424:CDS
TAGGATATCTCCAAGAGGTT+CGG 0.497794 6.3:+79704351 None:intergenic
ATATTTGAAGCCACGCCTGA+AGG 0.500133 6.3:-79704190 MS.gene61424:CDS
AATATCATTTCTGATAACAT+TGG 0.508152 6.3:+79703725 None:intergenic
CAGTTTCACACCGGAAATGT+TGG 0.510515 6.3:-79703575 MS.gene61424:CDS
TGATATGCTAGATACACTTA+AGG 0.511141 6.3:-79703423 MS.gene61424:CDS
TGACAGATGAAAGGTTATTG+TGG 0.512607 6.3:-79704687 MS.gene61424:CDS
GAGAAGATATAGACATATCA+AGG 0.512952 6.3:-79703271 MS.gene61424:CDS
GAGAAAGGGTACACAAAGAC+TGG 0.513654 6.3:-79704910 MS.gene61424:CDS
CTGATAACATTGGATGAACT+GGG 0.513834 6.3:+79703735 None:intergenic
AGCTATGACCACAACTATCC+AGG 0.523090 6.3:-79704383 MS.gene61424:CDS
TCGAGTTAGAAGTCTAGAAC+GGG 0.524083 6.3:-79703471 MS.gene61424:CDS
ATGGTTGCAGAACTCTCGCC+CGG 0.525007 6.3:-79703519 MS.gene61424:CDS
TTAGAAGTCTAGAACGGGCT+AGG 0.525684 6.3:-79703466 MS.gene61424:CDS
CTCGCATAAAGTTCGATGAT+CGG 0.527863 6.3:+79704463 None:intergenic
CTTGCGAGACCCTTCAGGCG+TGG 0.529732 6.3:+79704180 None:intergenic
TATTTGAAGCCACGCCTGAA+GGG 0.532088 6.3:-79704189 MS.gene61424:CDS
AGATAACAAATAGAGGAAAG+AGG 0.536641 6.3:-79703769 MS.gene61424:CDS
TATCTTCTCTCCCTAAAGCT+GGG 0.541816 6.3:+79703285 None:intergenic
TTTCGCCCTTTATAAACTCA+AGG 0.545141 6.3:+79705142 None:intergenic
GGATGCTGTGATGATCGCTT+TGG 0.546003 6.3:+79705789 None:intergenic
ATAAAGTACGTTGTAGATCC+GGG 0.548292 6.3:-79704109 MS.gene61424:CDS
TTACAAAATGCATAATAGCT+GGG 0.548823 6.3:-79703367 MS.gene61424:CDS
GTGTAAAACAAATTCAAGAA+AGG 0.549459 6.3:-79705059 MS.gene61424:CDS
CAATGTCCTCTTGGTCAACA+AGG 0.553718 6.3:+79704323 None:intergenic
ATAAGACACCATTGAGAACA+TGG 0.558396 6.3:+79705848 None:intergenic
AAGAGGACGGTACATCATAC+AGG 0.562263 6.3:-79703319 MS.gene61424:CDS
GTTTAGCGACTTCTTTGGTG+AGG 0.564185 6.3:-79704488 MS.gene61424:CDS
TATGTCAGGCTTATAAGCTA+AGG 0.567746 6.3:+79703859 None:intergenic
TTTACACAAGCTGACTTAGG+TGG 0.571621 6.3:+79705075 None:intergenic
GATGATCGCTTTGGAAGATA+AGG 0.574317 6.3:+79705798 None:intergenic
TCTACCAATTTCTAAAGGGA+AGG 0.578747 6.3:-79705028 MS.gene61424:CDS
CATGACCACCATTTGTTCAG+CGG 0.580398 6.3:-79704860 MS.gene61424:CDS
TTGAAGATTGTTGGACACCA+TGG 0.580745 6.3:-79704777 MS.gene61424:CDS
CTGTGACATGTCGAATGTAT+CGG 0.582508 6.3:+79703177 None:intergenic
CACGCCTGAAGGGTCTCGCA+AGG 0.585081 6.3:-79704179 MS.gene61424:CDS
GATTAACGCCTATATTTCTG+AGG 0.585097 6.3:+79703891 None:intergenic
ATACTTCATCACAGATTAGG+TGG 0.586360 6.3:+79703104 None:intergenic
CATATCAAAACCTTAAGTGT+TGG 0.587500 6.3:+79704544 None:intergenic
GTTTGCTCCACAAAGAGTCC+CGG 0.593828 6.3:+79704091 None:intergenic
ATTGTTGCGATGCTTTGTGT+TGG 0.593868 6.3:-79703662 MS.gene61424:CDS
AACAAATAGAGGAAAGAGGA+TGG 0.595776 6.3:-79703765 MS.gene61424:CDS
AAGAAGTAGCCGACAATGCG+AGG 0.596475 6.3:-79703601 MS.gene61424:CDS
CATGAAATGGAGGTTAAGCT+GGG 0.597126 6.3:-79704826 MS.gene61424:CDS
TTCGAGTTAGAAGTCTAGAA+CGG 0.598486 6.3:-79703472 MS.gene61424:CDS
TAAAACAAATTCAAGAAAGG+AGG 0.598607 6.3:-79705056 MS.gene61424:CDS
TATTTGATGATTGTACTCGT+TGG 0.603808 6.3:+79704712 None:intergenic
GTTAAGCTGGGAACTAAAGT+CGG 0.611431 6.3:-79704814 MS.gene61424:CDS
TCAAATATATGACAGATGAA+AGG 0.613348 6.3:-79704696 MS.gene61424:CDS
ATTGCAGGAGAAACAGGTGC+CGG 0.613996 6.3:-79704964 MS.gene61424:CDS
GGTTCGTGAACGTGACAAGT+TGG 0.614134 6.3:+79705768 None:intergenic
TATCTTGTAGATCAATAGGA+AGG 0.618332 6.3:+79704215 None:intergenic
GCGAGCTCTGTTATATGCTG+AGG 0.620266 6.3:+79704033 None:intergenic
CAAATGGTGGTCATGCACTC+CGG 0.622307 6.3:+79704868 None:intergenic
CGCATAAAGTTCGATGATCG+GGG 0.632712 6.3:+79704465 None:intergenic
GCGAGGTTGCAGTTTCACAC+CGG 0.638331 6.3:-79703584 MS.gene61424:CDS
TTTAACCGCTGAACAAATGG+TGG 0.640036 6.3:+79704855 None:intergenic
TCGTTTGTGAAGATTGCTGG+AGG 0.642111 6.3:-79703140 MS.gene61424:CDS
GCATTGTGGACAACTACAAG+AGG 0.650035 6.3:-79703336 MS.gene61424:CDS
GGAACAACACTGCAGTTGTG+AGG 0.653648 6.3:+79703912 None:intergenic
TAAGACACCATTGAGAACAT+GGG 0.656119 6.3:+79705849 None:intergenic
TAAAGTCGCTCATGAAATGG+AGG 0.658176 6.3:-79704836 MS.gene61424:CDS
TGTTCTGGAAGAAATGGTGT+TGG 0.663196 6.3:-79704010 MS.gene61424:CDS
GAGATGCACCTGGATAGTTG+TGG 0.669222 6.3:+79704375 None:intergenic
GAGGTTCGGAGAGATGCACC+TGG 0.670383 6.3:+79704365 None:intergenic
AGGGAAGGATGACTTGCTGG+AGG 0.681111 6.3:-79705013 MS.gene61424:CDS
CGATCATCGAACTTTATGCG+AGG 0.684262 6.3:-79704462 MS.gene61424:CDS
TGTGGACAACTACAAGAGGA+CGG 0.693226 6.3:-79703332 MS.gene61424:CDS
ATAGGAAGGTTAGTATACAG+AGG 0.700740 6.3:+79704229 None:intergenic
CATGGCGTAAAATCATCACA+CGG 0.704471 6.3:-79704759 MS.gene61424:CDS
AAAACTAGGATATCTCCAAG+AGG 0.724177 6.3:+79704346 None:intergenic
GGCACGCTACAAGTGTACAG+AGG 0.751061 6.3:-79703696 MS.gene61424:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAAATATTAATTATTGC+AGG - chr6.3:79703979-79703998 MS.gene61424:CDS 15.0%
!! TTGATATAATATATATCAAC+TGG + chr6.3:79704528-79704547 None:intergenic 15.0%
!!! CTATTCTTTTGAATTTTTTA+AGG - chr6.3:79703704-79703723 MS.gene61424:CDS 15.0%
!! AATATCATTTCTGATAACAT+TGG + chr6.3:79705236-79705255 None:intergenic 20.0%
!! AATGATAAGATAACAAATAG+AGG - chr6.3:79705182-79705201 MS.gene61424:intron 20.0%
!! AATGTTATCAGAAATGATAT+TGG - chr6.3:79705235-79705254 MS.gene61424:intron 20.0%
!! AGACATTTAAAAAAGCTATA+TGG + chr6.3:79705412-79705431 None:intergenic 20.0%
!! CTTTATTCCATAAATTGATA+AGG + chr6.3:79704835-79704854 None:intergenic 20.0%
!! TCATGAAATATAATCAATTC+AGG + chr6.3:79705752-79705771 None:intergenic 20.0%
!!! TTTTAAATGTCTACAATTCA+TGG - chr6.3:79705420-79705439 MS.gene61424:intron 20.0%
! AACCATAAAATTAGAAGCTT+CGG - chr6.3:79704678-79704697 MS.gene61424:CDS 25.0%
! AACTAACCCTAAAAGAATAT+CGG + chr6.3:79704373-79704392 None:intergenic 25.0%
! AAGAATCTACCAATTTCTAA+AGG - chr6.3:79703925-79703944 MS.gene61424:CDS 25.0%
! AATCCAAACTAATTCAATTC+GGG - chr6.3:79703349-79703368 MS.gene61424:CDS 25.0%
! AGAATCTACCAATTTCTAAA+GGG - chr6.3:79703926-79703945 MS.gene61424:CDS 25.0%
! ATCATGAACCTGTAAAAAAA+AGG + chr6.3:79703782-79703801 None:intergenic 25.0%
! ATTACAAAATGCATAATAGC+TGG - chr6.3:79705590-79705609 MS.gene61424:intron 25.0%
! CAATCCAAACTAATTCAATT+CGG - chr6.3:79703348-79703367 MS.gene61424:CDS 25.0%
! GAAACATCCTTATCAATTTA+TGG - chr6.3:79704825-79704844 MS.gene61424:CDS 25.0%
! GCATATCAACCAAATATAAA+CGG + chr6.3:79705523-79705542 None:intergenic 25.0%
! GTGTAAAACAAATTCAAGAA+AGG - chr6.3:79703899-79703918 MS.gene61424:CDS 25.0%
! TAAAACAAATTCAAGAAAGG+AGG - chr6.3:79703902-79703921 MS.gene61424:CDS 25.0%
! TAGGAAAATCCGTTTATATT+TGG - chr6.3:79705511-79705530 MS.gene61424:intron 25.0%
! TCAAATATATGACAGATGAA+AGG - chr6.3:79704262-79704281 MS.gene61424:CDS 25.0%
! TCATGAACCTGTAAAAAAAA+GGG + chr6.3:79703781-79703800 None:intergenic 25.0%
! TTACAAAATGCATAATAGCT+GGG - chr6.3:79705591-79705610 MS.gene61424:intron 25.0%
!! AGCTATTATGCATTTTGTAA+TGG + chr6.3:79705591-79705610 None:intergenic 25.0%
!!! TTTACTACCCTTTTTTTTAC+AGG - chr6.3:79703771-79703790 MS.gene61424:CDS 25.0%
AAAGGACAAAAATGAGATAC+TGG - chr6.3:79704446-79704465 MS.gene61424:CDS 30.0%
AATAAAGTACGTTGTAGATC+CGG - chr6.3:79704848-79704867 MS.gene61424:CDS 30.0%
ACCATAAAATTAGAAGCTTC+GGG - chr6.3:79704679-79704698 MS.gene61424:CDS 30.0%
AGACTTCCTTGAGTTTATAA+AGG - chr6.3:79703810-79703829 MS.gene61424:CDS 30.0%
AGATAACAAATAGAGGAAAG+AGG - chr6.3:79705189-79705208 MS.gene61424:intron 30.0%
ATCCTATCTTGTAGATCAAT+AGG + chr6.3:79704750-79704769 None:intergenic 30.0%
CAAATATCAGTACACGAATT+AGG + chr6.3:79703625-79703644 None:intergenic 30.0%
CATATCAAAACCTTAAGTGT+TGG + chr6.3:79704417-79704436 None:intergenic 30.0%
GACTTCCTTGAGTTTATAAA+GGG - chr6.3:79703811-79703830 MS.gene61424:CDS 30.0%
GAGAAGATATAGACATATCA+AGG - chr6.3:79705687-79705706 MS.gene61424:intron 30.0%
TATCTTGTAGATCAATAGGA+AGG + chr6.3:79704746-79704765 None:intergenic 30.0%
TGATATGCTAGATACACTTA+AGG - chr6.3:79705535-79705554 MS.gene61424:intron 30.0%
TTAATTATTGCAGGAGAAAC+AGG - chr6.3:79703988-79704007 MS.gene61424:CDS 30.0%
TTCCTATTGATCTACAAGAT+AGG - chr6.3:79704745-79704764 MS.gene61424:CDS 30.0%
TTTATAAAGGGCGAAAAGAT+TGG - chr6.3:79703823-79703842 MS.gene61424:CDS 30.0%
TTTGATATGTCTCTCTTCAA+AGG - chr6.3:79704428-79704447 MS.gene61424:CDS 30.0%
! AAGGTTATTGTGGGAATTTT+TGG - chr6.3:79704281-79704300 MS.gene61424:CDS 30.0%
! AATTAGTTTGGATTGATGTG+AGG + chr6.3:79703343-79703362 None:intergenic 30.0%
! ATCTCAACCGATATTCTTTT+AGG - chr6.3:79704363-79704382 MS.gene61424:CDS 30.0%
! TATTTGATGATTGTACTCGT+TGG + chr6.3:79704249-79704268 None:intergenic 30.0%
! TCTCAACCGATATTCTTTTA+GGG - chr6.3:79704364-79704383 MS.gene61424:CDS 30.0%
!! ATCAGAAATGATATTGGCTT+CGG - chr6.3:79705241-79705260 MS.gene61424:intron 30.0%
!! ATGGACAGAGATTTTAACAA+GGG - chr6.3:79703582-79703601 MS.gene61424:CDS 30.0%
!! CAGTTTCTTTTGAAGATTGT+TGG - chr6.3:79704172-79704191 MS.gene61424:CDS 30.0%
AAAACTAGGATATCTCCAAG+AGG + chr6.3:79704615-79704634 None:intergenic 35.0%
AAAATTAGAAGCTTCGGGAT+TGG - chr6.3:79704684-79704703 MS.gene61424:CDS 35.0%
AACAAATAGAGGAAAGAGGA+TGG - chr6.3:79705193-79705212 MS.gene61424:intron 35.0%
ACTGGTCAACAAGTTATTGT+TGG - chr6.3:79704888-79704907 MS.gene61424:CDS 35.0%
AGGAATTTGTGAAGTCTTTC+CGG + chr6.3:79704016-79704035 None:intergenic 35.0%
ATAAAGTACGTTGTAGATCC+GGG - chr6.3:79704849-79704868 MS.gene61424:CDS 35.0%
ATAGGAAGGTTAGTATACAG+AGG + chr6.3:79704732-79704751 None:intergenic 35.0%
CGTTTATGTTTGACATTTGC+AGG + chr6.3:79703433-79703452 None:intergenic 35.0%
CTCAATATCTGCATGAGAAA+GGG - chr6.3:79704034-79704053 MS.gene61424:CDS 35.0%
CTGATAACATTGGATGAACT+GGG + chr6.3:79705226-79705245 None:intergenic 35.0%
CTTGTTAAAATCTCTGTCCA+TGG + chr6.3:79703583-79703602 None:intergenic 35.0%
GAATCTATGTAGTTAGCAAC+AGG + chr6.3:79704555-79704574 None:intergenic 35.0%
GACAGATGAAAGGTTATTGT+GGG - chr6.3:79704272-79704291 MS.gene61424:CDS 35.0%
TATATGGTCTCCAACATTTC+CGG + chr6.3:79705396-79705415 None:intergenic 35.0%
TATGTCAGGCTTATAAGCTA+AGG + chr6.3:79705102-79705121 None:intergenic 35.0%
TCTGATAACATTGGATGAAC+TGG + chr6.3:79705227-79705246 None:intergenic 35.0%
TCTTCTTCTTCTTTACCCTT+TGG + chr6.3:79705341-79705360 None:intergenic 35.0%
TGACAGATGAAAGGTTATTG+TGG - chr6.3:79704271-79704290 MS.gene61424:CDS 35.0%
TTTCGCCCTTTATAAACTCA+AGG + chr6.3:79703819-79703838 None:intergenic 35.0%
! ACATACCAGATCTGAAGTTA+TGG - chr6.3:79705117-79705136 MS.gene61424:CDS 35.0%
! GATTAACGCCTATATTTCTG+AGG + chr6.3:79705070-79705089 None:intergenic 35.0%
! GTGTTGTTCCTCAGAAATAT+AGG - chr6.3:79705059-79705078 MS.gene61424:CDS 35.0%
! TCAGTATTTTGTCGTCCAAA+GGG - chr6.3:79705323-79705342 MS.gene61424:intron 35.0%
! TCATCCTTCCCTTTAGAAAT+TGG + chr6.3:79703937-79703956 None:intergenic 35.0%
! TCCCGAAGCTTCTAATTTTA+TGG + chr6.3:79704683-79704702 None:intergenic 35.0%
! TCTACCAATTTCTAAAGGGA+AGG - chr6.3:79703930-79703949 MS.gene61424:CDS 35.0%
! TCTGAAGTTATGGCTTTCTA+TGG - chr6.3:79705127-79705146 MS.gene61424:CDS 35.0%
! TTCGAGTTAGAAGTCTAGAA+CGG - chr6.3:79705486-79705505 MS.gene61424:intron 35.0%
!! CATGGACAGAGATTTTAACA+AGG - chr6.3:79703581-79703600 MS.gene61424:CDS 35.0%
!! TGGACAGAGATTTTAACAAG+GGG - chr6.3:79703583-79703602 MS.gene61424:CDS 35.0%
!! TGTTTTACACAAGCTGACTT+AGG + chr6.3:79703889-79703908 None:intergenic 35.0%
AACTTCAGATCTGGTATGTC+AGG + chr6.3:79705116-79705135 None:intergenic 40.0%
ATATCTTCTCTCCCTAAAGC+TGG + chr6.3:79705677-79705696 None:intergenic 40.0%
ATGAAAGTTGCGACACAACT+GGG + chr6.3:79703409-79703428 None:intergenic 40.0%
ATTGTTGCGATGCTTTGTGT+TGG - chr6.3:79705296-79705315 MS.gene61424:intron 40.0%
CACGAATTAGGCTGAAAACT+AGG + chr6.3:79703613-79703632 None:intergenic 40.0%
CATGAAATGGAGGTTAAGCT+GGG - chr6.3:79704132-79704151 MS.gene61424:CDS 40.0%
CATGGCGTAAAATCATCACA+CGG - chr6.3:79704199-79704218 MS.gene61424:CDS 40.0%
CCTCAATATCTGCATGAGAA+AGG - chr6.3:79704033-79704052 MS.gene61424:CDS 40.0%
CCTTTCTCATGCAGATATTG+AGG + chr6.3:79704036-79704055 None:intergenic 40.0%
CTCGCATAAAGTTCGATGAT+CGG + chr6.3:79704498-79704517 None:intergenic 40.0%
CTGCCCGAATTGAATTAGTT+TGG + chr6.3:79703355-79703374 None:intergenic 40.0%
CTGTCCATGGAGTGATAATT+TGG + chr6.3:79703570-79703589 None:intergenic 40.0%
CTGTGACATGTCGAATGTAT+CGG + chr6.3:79705784-79705803 None:intergenic 40.0%
CTTGGTCAACAAGGAAAACT+AGG + chr6.3:79704629-79704648 None:intergenic 40.0%
GAAAGCCATAACTTCAGATC+TGG + chr6.3:79705125-79705144 None:intergenic 40.0%
GACTTTAACCGCTGAACAAA+TGG + chr6.3:79704109-79704128 None:intergenic 40.0%
GATTCGTTTGTGAAGATTGC+TGG - chr6.3:79705815-79705834 MS.gene61424:CDS 40.0%
GGTTAAAGTCGCTCATGAAA+TGG - chr6.3:79704119-79704138 MS.gene61424:CDS 40.0%
GTTAAGCTGGGAACTAAAGT+CGG - chr6.3:79704144-79704163 MS.gene61424:CDS 40.0%
GTTCACGAACCTCATTCAAA+CGG - chr6.3:79703202-79703221 MS.gene61424:CDS 40.0%
TAAAGTCGCTCATGAAATGG+AGG - chr6.3:79704122-79704141 MS.gene61424:CDS 40.0%
TAGCACAAGACCAACACTTA+AGG - chr6.3:79704404-79704423 MS.gene61424:CDS 40.0%
TAGGATATCTCCAAGAGGTT+CGG + chr6.3:79704610-79704629 None:intergenic 40.0%
TATCTTCTCTCCCTAAAGCT+GGG + chr6.3:79705676-79705695 None:intergenic 40.0%
TATGAAAGTTGCGACACAAC+TGG + chr6.3:79703410-79703429 None:intergenic 40.0%
TCATGAAATGGAGGTTAAGC+TGG - chr6.3:79704131-79704150 MS.gene61424:CDS 40.0%
TCCATGGAGTGATAATTTGG+CGG + chr6.3:79703567-79703586 None:intergenic 40.0%
TCGCATAAAGTTCGATGATC+GGG + chr6.3:79704497-79704516 None:intergenic 40.0%
TGTCCACAATATTGCTTCAG+CGG + chr6.3:79703481-79703500 None:intergenic 40.0%
TGTGTTTGTCGAATGTGATG+TGG + chr6.3:79703531-79703550 None:intergenic 40.0%
TTGAAGATTGTTGGACACCA+TGG - chr6.3:79704181-79704200 MS.gene61424:CDS 40.0%
TTTAACCGCTGAACAAATGG+TGG + chr6.3:79704106-79704125 None:intergenic 40.0%
! ACTGAACTGGTTTCAGTTGT+GGG + chr6.3:79703139-79703158 None:intergenic 40.0%
! AGTTTTCCTTGTTGACCAAG+AGG - chr6.3:79704629-79704648 MS.gene61424:CDS 40.0%
! CTCAGTATTTTGTCGTCCAA+AGG - chr6.3:79705322-79705341 MS.gene61424:intron 40.0%
! TCGAGTTAGAAGTCTAGAAC+GGG - chr6.3:79705487-79705506 MS.gene61424:intron 40.0%
! TTCTCATAGCACCATTTTGC+CGG + chr6.3:79705461-79705480 None:intergenic 40.0%
! TTTACACAAGCTGACTTAGG+TGG + chr6.3:79703886-79703905 None:intergenic 40.0%
! TTTTAGCCAATCCCGAACAA+GGG + chr6.3:79705724-79705743 None:intergenic 40.0%
!! CGACATCTTTAGAGCTTGTA+AGG + chr6.3:79705565-79705584 None:intergenic 40.0%
!! GATGATCGCTTTGGAAGATA+AGG + chr6.3:79703163-79703182 None:intergenic 40.0%
!! TGTTCTGGAAGAAATGGTGT+TGG - chr6.3:79704948-79704967 MS.gene61424:CDS 40.0%
!! TTTTTAGCCAATCCCGAACA+AGG + chr6.3:79705725-79705744 None:intergenic 40.0%
AAACTGCAACCTCGCATTGT+CGG + chr6.3:79705369-79705388 None:intergenic 45.0%
AAGAGGACGGTACATCATAC+AGG - chr6.3:79705639-79705658 MS.gene61424:intron 45.0%
AAGCTTACACACCCAGCTTT+AGG - chr6.3:79705662-79705681 MS.gene61424:intron 45.0%
ACAATATTGCTTCAGCGGCT+GGG + chr6.3:79703476-79703495 None:intergenic 45.0%
AGAAGCTTCGGGATTGGAAT+TGG - chr6.3:79704690-79704709 MS.gene61424:CDS 45.0%
AGCTATGACCACAACTATCC+AGG - chr6.3:79704575-79704594 MS.gene61424:CDS 45.0%
AGCTTACACACCCAGCTTTA+GGG - chr6.3:79705663-79705682 MS.gene61424:intron 45.0%
ATAATTTGGCGGAGGCTGAT+TGG + chr6.3:79703556-79703575 None:intergenic 45.0%
ATGGAGTGATAATTTGGCGG+AGG + chr6.3:79703564-79703583 None:intergenic 45.0%
CAATGTCCTCTTGGTCAACA+AGG + chr6.3:79704638-79704657 None:intergenic 45.0%
CAGCATGTTCAATGTCCTCT+TGG + chr6.3:79704647-79704666 None:intergenic 45.0%
CAGTTTCACACCGGAAATGT+TGG - chr6.3:79705383-79705402 MS.gene61424:intron 45.0%
CATGACCACCATTTGTTCAG+CGG - chr6.3:79704098-79704117 MS.gene61424:CDS 45.0%
CGATCATCGAACTTTATGCG+AGG - chr6.3:79704496-79704515 MS.gene61424:CDS 45.0%
CGCATAAAGTTCGATGATCG+GGG + chr6.3:79704496-79704515 None:intergenic 45.0%
CGGGATTGGAATTGGTGAAT+TGG - chr6.3:79704698-79704717 MS.gene61424:CDS 45.0%
GCATTGTGGACAACTACAAG+AGG - chr6.3:79705622-79705641 MS.gene61424:intron 45.0%
GCTGGGCAGGTTTAACAATA+TGG + chr6.3:79703459-79703478 None:intergenic 45.0%
GTTTAGCGACTTCTTTGGTG+AGG - chr6.3:79704470-79704489 MS.gene61424:CDS 45.0%
TATAACAGAGCTCGCTGTTC+TGG - chr6.3:79704933-79704952 MS.gene61424:CDS 45.0%
TCCGCCAAATTATCACTCCA+TGG - chr6.3:79703563-79703582 MS.gene61424:CDS 45.0%
TCGTTTGTGAAGATTGCTGG+AGG - chr6.3:79705818-79705837 MS.gene61424:CDS 45.0%
TGTGGACAACTACAAGAGGA+CGG - chr6.3:79705626-79705645 MS.gene61424:intron 45.0%
TTGTCGAATGTGATGTGGCT+CGG + chr6.3:79703526-79703545 None:intergenic 45.0%
! ATATTTGAAGCCACGCCTGA+AGG - chr6.3:79704768-79704787 MS.gene61424:CDS 45.0%
! CACTGAACTGGTTTCAGTTG+TGG + chr6.3:79703140-79703159 None:intergenic 45.0%
! CGTGTGATGATTTTACGCCA+TGG + chr6.3:79704201-79704220 None:intergenic 45.0%
! GAGAAAGGGTACACAAAGAC+TGG - chr6.3:79704048-79704067 MS.gene61424:CDS 45.0%
! GCTGGGTTTTTCTTGCATTG+TGG - chr6.3:79705608-79705627 MS.gene61424:intron 45.0%
! TAAAGGGAAGGATGACTTGC+TGG - chr6.3:79703942-79703961 MS.gene61424:CDS 45.0%
! TATTTGAAGCCACGCCTGAA+GGG - chr6.3:79704769-79704788 MS.gene61424:CDS 45.0%
! TCTCATAGCACCATTTTGCC+GGG + chr6.3:79705460-79705479 None:intergenic 45.0%
! TTAGAAGTCTAGAACGGGCT+AGG - chr6.3:79705492-79705511 MS.gene61424:intron 45.0%
!! TGGAAGATAAGGCACTGAAC+TGG + chr6.3:79703152-79703171 None:intergenic 45.0%
AAGAAGTAGCCGACAATGCG+AGG - chr6.3:79705357-79705376 MS.gene61424:intron 50.0%
AGACGCCAACTGTGATTGTG+CGG + chr6.3:79703319-79703338 None:intergenic 50.0%
ATTGCAGGAGAAACAGGTGC+CGG - chr6.3:79703994-79704013 MS.gene61424:CDS 50.0%
CAAATGGTGGTCATGCACTC+CGG + chr6.3:79704093-79704112 None:intergenic 50.0%
CACAATATTGCTTCAGCGGC+TGG + chr6.3:79703477-79703496 None:intergenic 50.0%
CACGAACCTCATTCAAACGG+AGG - chr6.3:79703205-79703224 MS.gene61424:CDS 50.0%
CAGCCGCTGAAGCAATATTG+TGG - chr6.3:79703475-79703494 MS.gene61424:CDS 50.0%
CAGTCACCTCCGTTTGAATG+AGG + chr6.3:79703214-79703233 None:intergenic 50.0%
CATACACCCTTGTTCGGGAT+TGG - chr6.3:79705715-79705734 MS.gene61424:intron 50.0%
CTGGCGTTTAGCGACTTCTT+TGG - chr6.3:79704465-79704484 MS.gene61424:CDS 50.0%
CTTCGCATACACCCTTGTTC+GGG - chr6.3:79705710-79705729 MS.gene61424:intron 50.0%
GAGATGCACCTGGATAGTTG+TGG + chr6.3:79704586-79704605 None:intergenic 50.0%
GCATTCCGCACAATCACAGT+TGG - chr6.3:79703311-79703330 MS.gene61424:CDS 50.0%
GCGAGCTCTGTTATATGCTG+AGG + chr6.3:79704928-79704947 None:intergenic 50.0%
GCTTCGCATACACCCTTGTT+CGG - chr6.3:79705709-79705728 MS.gene61424:intron 50.0%
GGAACAACACTGCAGTTGTG+AGG + chr6.3:79705049-79705068 None:intergenic 50.0%
GGACTCTTTGTGGAGCAAAC+TGG - chr6.3:79704870-79704889 MS.gene61424:CDS 50.0%
GGATGCTGTGATGATCGCTT+TGG + chr6.3:79703172-79703191 None:intergenic 50.0%
GGTTCGTGAACGTGACAAGT+TGG + chr6.3:79703193-79703212 None:intergenic 50.0%
GTTTGCTCCACAAAGAGTCC+CGG + chr6.3:79704870-79704889 None:intergenic 50.0%
TGTAGATCCGGGACTCTTTG+TGG - chr6.3:79704860-79704879 MS.gene61424:CDS 50.0%
TGTCGAATGTGATGTGGCTC+GGG + chr6.3:79703525-79703544 None:intergenic 50.0%
! TGCGGAATGCTTTGAGTAGC+TGG + chr6.3:79703301-79703320 None:intergenic 50.0%
!! CGCTGTTTTCTGCCACTGAT+TGG - chr6.3:79703237-79703256 MS.gene61424:CDS 50.0%
!! GCTCGCTGTTCTGGAAGAAA+TGG - chr6.3:79704942-79704961 MS.gene61424:CDS 50.0%
!! GGGAAAGCTGGTATTGGCTT+GGG + chr6.3:79703505-79703524 None:intergenic 50.0%
ACAACCTTGCGAGACCCTTC+AGG + chr6.3:79704786-79704805 None:intergenic 55.0%
AGAACTCTCGCCCGGCAAAA+TGG - chr6.3:79705447-79705466 MS.gene61424:intron 55.0%
AGGTCAGCACGCTCTACTTC+AGG + chr6.3:79705029-79705048 None:intergenic 55.0%
AGTCGTTGCGTGTGTGCAAC+CGG - chr6.3:79704071-79704090 MS.gene61424:CDS 55.0%
ATGGTTGCAGAACTCTCGCC+CGG - chr6.3:79705439-79705458 MS.gene61424:intron 55.0%
GCGAGGTTGCAGTTTCACAC+CGG - chr6.3:79705374-79705393 MS.gene61424:intron 55.0%
GGCACGCTACAAGTGTACAG+AGG - chr6.3:79705262-79705281 MS.gene61424:intron 55.0%
GTGCATCTCTCCGAACCTCT+TGG - chr6.3:79704597-79704616 MS.gene61424:CDS 55.0%
TTGCGACACAACTGGGAGAG+TGG + chr6.3:79703402-79703421 None:intergenic 55.0%
! TGGCTCGGGAAAGCTGGTAT+TGG + chr6.3:79703511-79703530 None:intergenic 55.0%
!! AGGGAAGGATGACTTGCTGG+AGG - chr6.3:79703945-79703964 MS.gene61424:CDS 55.0%
!! CGGGAAAGCTGGTATTGGCT+TGG + chr6.3:79703506-79703525 None:intergenic 55.0%
ACAGCAGCAGCGCCAATCAG+TGG + chr6.3:79703252-79703271 None:intergenic 60.0%
GAGGTTCGGAGAGATGCACC+TGG + chr6.3:79704596-79704615 None:intergenic 60.0%
GGAGAGTGGCTGTTCTGCAG+TGG + chr6.3:79703388-79703407 None:intergenic 60.0%
TATTGCTTCAGCGGCTGGGC+AGG + chr6.3:79703472-79703491 None:intergenic 60.0%
! GTGATGTGGCTCGGGAAAGC+TGG + chr6.3:79703517-79703536 None:intergenic 60.0%
CACGCCTGAAGGGTCTCGCA+AGG - chr6.3:79704779-79704798 MS.gene61424:CDS 65.0%
CTTGCGAGACCCTTCAGGCG+TGG + chr6.3:79704781-79704800 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 79703112 79705868 79703112 ID=MS.gene61424
chr6.3 mRNA 79703112 79705868 79703112 ID=MS.gene61424.t1;Parent=MS.gene61424
chr6.3 exon 79705779 79705868 79705779 ID=MS.gene61424.t1.exon1;Parent=MS.gene61424.t1
chr6.3 CDS 79705779 79705868 79705779 ID=cds.MS.gene61424.t1;Parent=MS.gene61424.t1
chr6.3 exon 79703112 79705187 79703112 ID=MS.gene61424.t1.exon2;Parent=MS.gene61424.t1
chr6.3 CDS 79703112 79705187 79703112 ID=cds.MS.gene61424.t1;Parent=MS.gene61424.t1
Gene Sequence

>MS.gene61424

ATGTTCTCAATGGTGTCTTATCTTCCCACAACTGAAACCAGTTCAGTGCCTTATCTTCCAAAGCGATCATCACAGCATCCAACTTGTCACGTTCACGAACCTCATTCAAACGGAGGTGACTGAGACGCTGTTTTCTGCCACTGATTGGCGCTGCTGCTGTTGTGTGTTAACATCATTCTATTGCTGCCAGCTACTCAAAGCATTCCGCACAATCACAGTTGGCGTCTGCCTCACATCAATCCAAACTAATTCAATTCGGGCAGCACAAATATGCCACTGCAGAACAGCCACTCTCCCAGTTGTGTCGCAACTTTCATACCTGCAAATGTCAAACATAAACGCTGCCATATTGTTAAACCTGCCCAGCCGCTGAAGCAATATTGTGGACAACCCAAGCCAATACCAGCTTTCCCGAGCCACATCACATTCGACAAACACATGCCAATCAGCCTCCGCCAAATTATCACTCCATGGACAGAGATTTTAACAAGGGGCATACCTAGTTTTCAGCCTAATTCGTGTACTGATATTTGATGTTTTCTTCTATGAGTTCAAAATTAATTAGATCAGTATACAGTTAATTGAATTCTCACTATTCTTTTGAATTTTTTAAGGTATATTTGACATAGCTTTGTCTTTTACAGTTTTAATTATTCATGTTTACTACCCTTTTTTTTACAGGTTCATGATCATGAACAAGACTTCCTTGAGTTTATAAAGGGCGAAAAGATTGGTGATGAATGTGATTATTCAGATTCATTTGAATTTGTTCCACCTAAGTCAGCTTGTGTAAAACAAATTCAAGAAAGGAGGAAGAATCTACCAATTTCTAAAGGGAAGGATGACTTGCTGGAGGCTATTCATAAGAATCAAATATTAATTATTGCAGGAGAAACAGGTGCCGGAAAGACTTCACAAATTCCTCAATATCTGCATGAGAAAGGGTACACAAAGACTGGAGTCGTTGCGTGTGTGCAACCGGAGTGCATGACCACCATTTGTTCAGCGGTTAAAGTCGCTCATGAAATGGAGGTTAAGCTGGGAACTAAAGTCGGATATTCAGTTTCTTTTGAAGATTGTTGGACACCATGGCGTAAAATCATCACACGGAGTACAATCATCAAAGATATGACACCAACGAGTACAATCATCAAATATATGACAGATGAAAGGTTATTGTGGGAATTTTTGGTCGACAAAACACTGCAGTCTTACAATGTTTTAATGATCGATGAAGTTCAACAACGATCAATCTCAACCGATATTCTTTTAGGGTTAGTTAAAGAACTTGCTAGCACAAGACCAACACTTAAGGTTTTGATATGTCTCTCTTCAAAGGACAAAAATGAGATACTGGCGTTTAGCGACTTCTTTGGTGAGGCCCCGATCATCGAACTTTATGCGAGGTGTAGTCCAGTTGATATATATTATATCAAAGAACCTGTTGCTAACTACATAGATTCAGCTATGACCACAACTATCCAGGTGCATCTCTCCGAACCTCTTGGAGATATCCTAGTTTTCCTTGTTGACCAAGAGGACATTGAACATGCTGAAGAAGTGTTGAACCATAAAATTAGAAGCTTCGGGATTGGAATTGGTGAATTGGTAATATGTCCTCTGTATACTAACCTTCCTATTGATCTACAAGATAGGATATTTGAAGCCACGCCTGAAGGGTCTCGCAAGGTTGTTCTTGCTAGTAATATTGCAGAAACATCCTTATCAATTTATGGAATAAAGTACGTTGTAGATCCGGGACTCTTTGTGGAGCAAACTGGTCAACAAGTTATTGTTGGACAAATCTCAGCAGCCTCAGCATATAACAGAGCTCGCTGTTCTGGAAGAAATGGTGTTGGCAAGTGTTTTCGACTCTATACTAAATCTAGTTCTTTTGCGAAGATAATCACGACACCTGAAGTAGAGCGTGCTGACCTCACAACTGCAGTGTTGTTCCTCAGAAATATAGGCGTTAATCATTGCGAAACCTTAGCTTATAAGCCTGACATACCAGATCTGAAGTTATGGCTTTCTATGGAACTTCTATATGCTATGCATGCTTTAGATGATAATGATAAGATAACAAATAGAGGAAAGAGGATGGCATTTTTCCCAGTTCATCCAATGTTATCAGAAATGATATTGGCTTCGGCACGCTACAAGTGTACAGAGGAAATCATTACTATTGTTGCGATGCTTTGTGTTGGCAACTCAGTATTTTGTCGTCCAAAGGGTAAAGAAGAAGAAGAAGTAGCCGACAATGCGAGGTTGCAGTTTCACACCGGAAATGTTGGAGACCATATAGCTTTTTTAAATGTCTACAATTCATGGTTGCAGAACTCTCGCCCGGCAAAATGGTGCTATGAGAATTACATTCGAGTTAGAAGTCTAGAACGGGCTAGGAAAATCCGTTTATATTTGGTTGATATGCTAGATACACTTAAGGTCAACCTTACAAGCTCTAAAGATGTCGCTGCCATTACAAAATGCATAATAGCTGGGTTTTTCTTGCATTGTGGACAACTACAAGAGGACGGTACATCATACAGGAAGCTTACACACCCAGCTTTAGGGAGAGAAGATATAGACATATCAAGGCTTCGCATACACCCTTGTTCGGGATTGGCTAAAAAACATCCTGAATTGATTATATTTCATGAAGTATCTGACCGATACATTCGACATGTCACAGAGATTGATCGCGATTCGTTTGTGAAGATTGCTGGAGGCTATTACAATCTTCCACCTAATCTGTGA
Protein sequence

>MS.gene61424.t1

MFSMVSYLPTTETSSVPYLPKRSSQHPTCHVHDHEQDFLEFIKGEKIGDECDYSDSFEFVPPKSACVKQIQERRKNLPISKGKDDLLEAIHKNQILIIAGETGAGKTSQIPQYLHEKGYTKTGVVACVQPECMTTICSAVKVAHEMEVKLGTKVGYSVSFEDCWTPWRKIITRSTIIKDMTPTSTIIKYMTDERLLWEFLVDKTLQSYNVLMIDEVQQRSISTDILLGLVKELASTRPTLKVLICLSSKDKNEILAFSDFFGEAPIIELYARCSPVDIYYIKEPVANYIDSAMTTTIQVHLSEPLGDILVFLVDQEDIEHAEEVLNHKIRSFGIGIGELVICPLYTNLPIDLQDRIFEATPEGSRKVVLASNIAETSLSIYGIKYVVDPGLFVEQTGQQVIVGQISAASAYNRARCSGRNGVGKCFRLYTKSSSFAKIITTPEVERADLTTAVLFLRNIGVNHCETLAYKPDIPDLKLWLSMELLYAMHALDDNDKITNRGKRMAFFPVHPMLSEMILASARYKCTEEIITIVAMLCVGNSVFCRPKGKEEEEVADNARLQFHTGNVGDHIAFLNVYNSWLQNSRPAKWCYENYIRVRSLERARKIRLYLVDMLDTLKVNLTSSKDVAAITKCIIAGFFLHCGQLQEDGTSYRKLTHPALGREDIDISRLRIHPCSGLAKKHPELIIFHEVSDRYIRHVTEIDRDSFVKIAGGYYNLPPNL