Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059621.t1 | XP_003620624.1 | 97.1 | 307 | 9 | 0 | 1 | 307 | 1 | 307 | 6.50E-164 | 586.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059621.t1 | G7KPF3 | 97.1 | 307 | 9 | 0 | 1 | 307 | 1 | 307 | 4.7e-164 | 586.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05308 | MS.gene059621 | 0.80361 | 3.21E-49 | -1.69E-46 |
| MS.gene059621 | MS.gene062165 | 0.804829 | 1.79E-49 | -1.69E-46 |
| MS.gene059621 | MS.gene21334 | 0.802262 | 6.10E-49 | -1.69E-46 |
| MS.gene059621 | MS.gene32182 | 0.811327 | 7.40E-51 | -1.69E-46 |
| MS.gene059621 | MS.gene35858 | 0.815312 | 9.86E-52 | -1.69E-46 |
| MS.gene059621 | MS.gene39406 | 0.809359 | 1.97E-50 | -1.69E-46 |
| MS.gene059621 | MS.gene44256 | 0.808137 | 3.59E-50 | -1.69E-46 |
| MS.gene059621 | MS.gene61424 | 0.801734 | 7.83E-49 | -1.69E-46 |
| MS.gene059621 | MS.gene68198 | 0.800523 | 1.38E-48 | -1.69E-46 |
| MS.gene059621 | MS.gene75587 | 0.802502 | 5.44E-49 | -1.69E-46 |
| MS.gene059621 | MS.gene89154 | 0.810465 | 1.14E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059621.t1 | MTR_6g087880 | 97.068 | 307 | 9 | 0 | 1 | 307 | 1 | 307 | 0.0 | 617 |
| MS.gene059621.t1 | MTR_2g101870 | 53.994 | 313 | 132 | 7 | 1 | 306 | 2 | 309 | 1.17e-111 | 326 |
| MS.gene059621.t1 | MTR_6g081930 | 38.854 | 314 | 164 | 6 | 1 | 306 | 1 | 294 | 1.28e-59 | 192 |
| MS.gene059621.t1 | MTR_8g106580 | 41.801 | 311 | 161 | 8 | 1 | 306 | 1 | 296 | 5.72e-55 | 181 |
| MS.gene059621.t1 | MTR_4g075730 | 37.580 | 314 | 161 | 11 | 1 | 294 | 6 | 304 | 3.41e-48 | 164 |
| MS.gene059621.t1 | MTR_8g086610 | 33.758 | 157 | 98 | 2 | 135 | 287 | 106 | 260 | 7.06e-30 | 114 |
| MS.gene059621.t1 | MTR_0154s0010 | 39.855 | 138 | 77 | 4 | 174 | 307 | 1 | 136 | 5.71e-28 | 105 |
| MS.gene059621.t1 | MTR_4g075730 | 38.261 | 230 | 113 | 9 | 1 | 214 | 6 | 222 | 2.34e-27 | 107 |
| MS.gene059621.t1 | MTR_3g037650 | 32.389 | 247 | 144 | 8 | 50 | 289 | 25 | 255 | 8.60e-26 | 103 |
| MS.gene059621.t1 | MTR_3g033530 | 27.885 | 312 | 178 | 11 | 25 | 294 | 29 | 335 | 7.29e-21 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059621.t1 | AT3G24605 | 42.258 | 310 | 156 | 7 | 1 | 303 | 3 | 296 | 1.58e-71 | 223 |
| MS.gene059621.t1 | AT1G45688 | 38.776 | 343 | 161 | 9 | 1 | 301 | 1 | 336 | 6.77e-60 | 195 |
| MS.gene059621.t1 | AT5G42860 | 38.019 | 313 | 152 | 7 | 1 | 286 | 1 | 298 | 2.67e-58 | 190 |
| MS.gene059621.t1 | AT3G24600 | 39.414 | 307 | 177 | 6 | 1 | 304 | 2 | 302 | 3.40e-51 | 171 |
| MS.gene059621.t1 | AT1G45688 | 40.000 | 245 | 118 | 8 | 1 | 223 | 1 | 238 | 6.40e-41 | 143 |
| MS.gene059621.t1 | AT4G35170 | 32.632 | 285 | 168 | 8 | 15 | 287 | 8 | 280 | 1.09e-39 | 141 |
| MS.gene059621.t1 | AT2G41990 | 33.882 | 304 | 163 | 8 | 1 | 289 | 1 | 281 | 1.21e-39 | 141 |
| MS.gene059621.t1 | AT3G08490 | 24.883 | 213 | 152 | 5 | 99 | 304 | 57 | 268 | 1.20e-14 | 73.2 |
Find 55 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGGACTTTGAACGTAATA+AGG | 0.257502 | 6.2:+87483349 | None:intergenic |
| TGCTGTTTGTGGGTTTGTTT+TGG | 0.310858 | 6.2:-87483053 | MS.gene059621:CDS |
| AATAGAAAAGTGAATGATAA+AGG | 0.318907 | 6.2:-87483172 | MS.gene059621:CDS |
| TCACCTTCACATCAATCTTA+TGG | 0.323598 | 6.2:-87483268 | MS.gene059621:CDS |
| CATAACCCTGCAACTTTCTT+CGG | 0.342827 | 6.2:-87481583 | MS.gene059621:CDS |
| TAAAGGGTGGATTGGATCTA+AGG | 0.346851 | 6.2:-87483155 | MS.gene059621:CDS |
| ACAGTACATAACTTCTACTT+TGG | 0.351398 | 6.2:-87481676 | MS.gene059621:CDS |
| TTTGATGTACTTGTTGTTGT+GGG | 0.406752 | 6.2:+87480614 | None:intergenic |
| TCATGAGAAGATTCTCTTGA+AGG | 0.427779 | 6.2:+87483331 | None:intergenic |
| TAAATGCCGAAGAAAGTTGC+AGG | 0.435222 | 6.2:+87481577 | None:intergenic |
| GGAAGCAAGGTTCCGTTGTA+TGG | 0.444719 | 6.2:-87480783 | MS.gene059621:CDS |
| GAAGAAGAAAATGGTGGTTA+TGG | 0.447068 | 6.2:-87483127 | MS.gene059621:CDS |
| TCTTCTTCTAGTAGAATCTC+TGG | 0.448547 | 6.2:-87483229 | MS.gene059621:CDS |
| GTGAATGATAAAGGGTGGAT+TGG | 0.450115 | 6.2:-87483163 | MS.gene059621:CDS |
| TTCACTGTAAGCATCTTAGT+TGG | 0.459875 | 6.2:+87481628 | None:intergenic |
| GTTTGATGTACTTGTTGTTG+TGG | 0.464472 | 6.2:+87480613 | None:intergenic |
| TGGTGCAGATGTTGCTAGCT+CGG | 0.471095 | 6.2:-87480757 | MS.gene059621:CDS |
| TCTGATCTTACAGTTGCAAC+CGG | 0.482541 | 6.2:-87481523 | MS.gene059621:CDS |
| AAGTCGCGCGGAAATGTTGT+AGG | 0.496383 | 6.2:-87480693 | MS.gene059621:CDS |
| AAGGTGATTGAAGAAGAAAA+TGG | 0.496674 | 6.2:-87483136 | MS.gene059621:CDS |
| GTATATTGACAGACACTGTT+CGG | 0.499883 | 6.2:+87480808 | None:intergenic |
| TTTGTGATCTTGGTGATGAT+GGG | 0.501451 | 6.2:+87483380 | None:intergenic |
| GGAGAAGGGTCAGACGTCAC+TGG | 0.514181 | 6.2:-87481655 | MS.gene059621:CDS |
| CATAACTTCTACTTTGGAGA+AGG | 0.514215 | 6.2:-87481670 | MS.gene059621:CDS |
| TAGAAGAAGAAGCTCTTGAA+TGG | 0.526972 | 6.2:+87483242 | None:intergenic |
| ATAGAAAAGTGAATGATAAA+GGG | 0.527874 | 6.2:-87483171 | MS.gene059621:CDS |
| AAGGTTCCGTTGTATGGCGC+TGG | 0.532002 | 6.2:-87480777 | MS.gene059621:CDS |
| CGGAAATGTTGTAGGCAAGT+TGG | 0.532289 | 6.2:-87480685 | MS.gene059621:CDS |
| TCAAGAGAATCTTCTCATGA+TGG | 0.544641 | 6.2:-87483328 | MS.gene059621:CDS |
| GAAAAGTGAATGATAAAGGG+TGG | 0.557185 | 6.2:-87483168 | MS.gene059621:CDS |
| AACAATGCAACCAAGTCCAA+TGG | 0.570691 | 6.2:-87483293 | MS.gene059621:CDS |
| TGATGTACTTGTTGTTGTGG+GGG | 0.577495 | 6.2:+87480616 | None:intergenic |
| ATACATAAGATTCACTGACT+TGG | 0.579991 | 6.2:+87481546 | None:intergenic |
| TTGATGTACTTGTTGTTGTG+GGG | 0.580202 | 6.2:+87480615 | None:intergenic |
| TGATGTGAAGGTGAATCCAT+TGG | 0.581487 | 6.2:+87483277 | None:intergenic |
| GAAGGTGAATCCATTGGACT+TGG | 0.584702 | 6.2:+87483283 | None:intergenic |
| GTGATCGAAATGGAGTTTCG+AGG | 0.592967 | 6.2:-87483093 | MS.gene059621:CDS |
| GTCTTTGAAGTTAAGTCGCG+CGG | 0.601720 | 6.2:-87480705 | MS.gene059621:CDS |
| TGTCAATATACAAGGAAGCA+AGG | 0.603269 | 6.2:-87480796 | MS.gene059621:CDS |
| ACAGTGTCTGTCAATATACA+AGG | 0.604063 | 6.2:-87480804 | MS.gene059621:CDS |
| TCTTCTAGTAGAATCTCTGG+TGG | 0.604232 | 6.2:-87483226 | MS.gene059621:CDS |
| ATAACTTCTACTTTGGAGAA+GGG | 0.607546 | 6.2:-87481669 | MS.gene059621:CDS |
| TCGAAATGGAGTTTCGAGGA+GGG | 0.621143 | 6.2:-87483089 | MS.gene059621:CDS |
| ATGTTGTAGGCAAGTTGGTG+AGG | 0.621904 | 6.2:-87480680 | MS.gene059621:CDS |
| GTGATTGAAGAAGAAAATGG+TGG | 0.627521 | 6.2:-87483133 | MS.gene059621:CDS |
| CAAACCTCAGCTCAGTGTCA+AGG | 0.632858 | 6.2:-87482984 | MS.gene059621:intron |
| TGTTAGAATACTTACCTCGC+CGG | 0.633742 | 6.2:+87481504 | None:intergenic |
| TATACCTTGACACTGAGCTG+AGG | 0.640482 | 6.2:+87482980 | None:intergenic |
| TGACCATAAGATTGATGTGA+AGG | 0.643898 | 6.2:+87483265 | None:intergenic |
| ATCGAAATGGAGTTTCGAGG+AGG | 0.650916 | 6.2:-87483090 | MS.gene059621:CDS |
| TATTGACAGACACTGTTCGG+CGG | 0.651348 | 6.2:+87480811 | None:intergenic |
| TCTGCACCAGCGCCATACAA+CGG | 0.667929 | 6.2:+87480771 | None:intergenic |
| AAATGCCGAAGAAAGTTGCA+GGG | 0.681577 | 6.2:+87481578 | None:intergenic |
| GTTGCTAGCTCGGTGAACAA+CGG | 0.683429 | 6.2:-87480747 | MS.gene059621:CDS |
| TCTTACAGTTGCAACCGGCG+AGG | 0.711048 | 6.2:-87481518 | MS.gene059621:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAAATTTCAAAAAAGT+TGG | + | chr6.2:87481943-87481962 | None:intergenic | 15.0% |
| !! | AATGAAATTTCAAAAAAGTT+GGG | + | chr6.2:87481942-87481961 | None:intergenic | 15.0% |
| !!! | CTAATTGTTTTTTTAATCAA+AGG | - | chr6.2:87481397-87481416 | MS.gene059621:intron | 15.0% |
| !!! | GTTTTTTTATTATAGTTAGA+AGG | - | chr6.2:87481434-87481453 | MS.gene059621:intron | 15.0% |
| !! | AATAGAAAAGTGAATGATAA+AGG | - | chr6.2:87480827-87480846 | MS.gene059621:CDS | 20.0% |
| !! | ATAGAAAAGTGAATGATAAA+GGG | - | chr6.2:87480828-87480847 | MS.gene059621:CDS | 20.0% |
| !! | TGATAAACTTATAGATGTTT+AGG | + | chr6.2:87482962-87482981 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTCAAAATCAATG+TGG | + | chr6.2:87481716-87481735 | None:intergenic | 20.0% |
| !!! | TTGATAGTTAAATTCATACT+AGG | - | chr6.2:87481570-87481589 | MS.gene059621:CDS | 20.0% |
| !!! | TTTGTTTTGTTTGATCATTT+GGG | - | chr6.2:87480976-87480995 | MS.gene059621:intron | 20.0% |
| !!! | TTTTAAAAAAATTGAGACAC+AGG | + | chr6.2:87482923-87482942 | None:intergenic | 20.0% |
| ! | ATTCATACTAGGAGATATTA+TGG | - | chr6.2:87481581-87481600 | MS.gene059621:CDS | 25.0% |
| ! | CAGGAAAATATATGATCATT+TGG | - | chr6.2:87481519-87481538 | MS.gene059621:CDS | 25.0% |
| ! | TTGAAAAAAAAGTTGCACTT+TGG | - | chr6.2:87481724-87481743 | MS.gene059621:intron | 25.0% |
| !!! | GGTTATAATAGCTCTTTTTT+GGG | - | chr6.2:87480794-87480813 | MS.gene059621:CDS | 25.0% |
| !!! | GTTTGTTTTGTTTGATCATT+TGG | - | chr6.2:87480975-87480994 | MS.gene059621:intron | 25.0% |
| !!! | TCACGATTGTGTTTTAATTA+AGG | - | chr6.2:87481070-87481089 | MS.gene059621:intron | 25.0% |
| !!! | TGGTTATAATAGCTCTTTTT+TGG | - | chr6.2:87480793-87480812 | MS.gene059621:CDS | 25.0% |
| AAATAAGATATAAGCTGTCC+TGG | + | chr6.2:87482673-87482692 | None:intergenic | 30.0% | |
| AAATTTCAAAAAAGTTGGGC+AGG | + | chr6.2:87481938-87481957 | None:intergenic | 30.0% | |
| AAGGTGATTGAAGAAGAAAA+TGG | - | chr6.2:87480863-87480882 | MS.gene059621:intron | 30.0% | |
| ACAGTACATAACTTCTACTT+TGG | - | chr6.2:87482323-87482342 | MS.gene059621:intron | 30.0% | |
| ATACCAAAAGTCTACCATTT+AGG | + | chr6.2:87481356-87481375 | None:intergenic | 30.0% | |
| ATGGAATTTGACAGTAAGAA+TGG | + | chr6.2:87483129-87483148 | None:intergenic | 30.0% | |
| CATAGTTTATCACAGAACAA+TGG | - | chr6.2:87482106-87482125 | MS.gene059621:intron | 30.0% | |
| CTATAAACGCTTAATTAAGC+TGG | - | chr6.2:87482770-87482789 | MS.gene059621:intron | 30.0% | |
| CTTGCAAAGCTTATAGAAAT+AGG | - | chr6.2:87481222-87481241 | MS.gene059621:intron | 30.0% | |
| GATATTATGGTTCAGCAAAA+TGG | - | chr6.2:87481594-87481613 | MS.gene059621:CDS | 30.0% | |
| GTCAAAAGTGAGTTCAAAAT+TGG | - | chr6.2:87483039-87483058 | MS.gene059621:CDS | 30.0% | |
| TAGCTACTAGTTAACAAAAC+TGG | - | chr6.2:87482166-87482185 | MS.gene059621:intron | 30.0% | |
| TATAAGAAACTTCCTTGCAT+TGG | - | chr6.2:87481038-87481057 | MS.gene059621:intron | 30.0% | |
| TATCTATGTTATGTGAACAG+TGG | - | chr6.2:87482191-87482210 | MS.gene059621:intron | 30.0% | |
| TTGTTAACTAGTAGCTATAG+TGG | + | chr6.2:87482163-87482182 | None:intergenic | 30.0% | |
| ! | ATAACTTCTACTTTGGAGAA+GGG | - | chr6.2:87482330-87482349 | MS.gene059621:intron | 30.0% |
| ! | ATACATAAGATTCACTGACT+TGG | + | chr6.2:87482456-87482475 | None:intergenic | 30.0% |
| !! | TTTGATGTACTTGTTGTTGT+GGG | + | chr6.2:87483388-87483407 | None:intergenic | 30.0% |
| !!! | AAGCACTTTTAAGACTGTTT+GGG | + | chr6.2:87481294-87481313 | None:intergenic | 30.0% |
| !!! | AGTTTTTCATTGCTGTTTGT+GGG | - | chr6.2:87480936-87480955 | MS.gene059621:intron | 30.0% |
| !!! | TAAGCACTTTTAAGACTGTT+TGG | + | chr6.2:87481295-87481314 | None:intergenic | 30.0% |
| !!! | TGAACTCACTTTTGACTTAT+GGG | + | chr6.2:87483035-87483054 | None:intergenic | 30.0% |
| !!! | TTGAACTCACTTTTGACTTA+TGG | + | chr6.2:87483036-87483055 | None:intergenic | 30.0% |
| AAATAAAGTACACGAGGCAA+AGG | + | chr6.2:87481826-87481845 | None:intergenic | 35.0% | |
| AATAGGCTGAAAACAGCTTA+TGG | - | chr6.2:87481239-87481258 | MS.gene059621:intron | 35.0% | |
| ACAGTGTCTGTCAATATACA+AGG | - | chr6.2:87483195-87483214 | MS.gene059621:CDS | 35.0% | |
| ACTACCAAATAAAGTACACG+AGG | + | chr6.2:87481832-87481851 | None:intergenic | 35.0% | |
| AGTTTCTCAAGTACTCATGT+CGG | + | chr6.2:87482621-87482640 | None:intergenic | 35.0% | |
| ATGCCAAATCCAAGATAAGA+GGG | + | chr6.2:87481488-87481507 | None:intergenic | 35.0% | |
| GAAAAGTGAATGATAAAGGG+TGG | - | chr6.2:87480831-87480850 | MS.gene059621:CDS | 35.0% | |
| GAAGAAGAAAATGGTGGTTA+TGG | - | chr6.2:87480872-87480891 | MS.gene059621:intron | 35.0% | |
| GAAGGACTTTGAACGTAATA+AGG | + | chr6.2:87480653-87480672 | None:intergenic | 35.0% | |
| GAGTACTTGAGAAACTGTTT+GGG | - | chr6.2:87482625-87482644 | MS.gene059621:intron | 35.0% | |
| GGCAAGATTGTAACATAACA+AGG | + | chr6.2:87481997-87482016 | None:intergenic | 35.0% | |
| GTATATTGACAGACACTGTT+CGG | + | chr6.2:87483194-87483213 | None:intergenic | 35.0% | |
| GTGATTGAAGAAGAAAATGG+TGG | - | chr6.2:87480866-87480885 | MS.gene059621:intron | 35.0% | |
| GTGTCTAAATCAACAAGTAC+TGG | + | chr6.2:87482525-87482544 | None:intergenic | 35.0% | |
| TAGAAGAAGAAGCTCTTGAA+TGG | + | chr6.2:87480760-87480779 | None:intergenic | 35.0% | |
| TCAAGAGAATCTTCTCATGA+TGG | - | chr6.2:87480671-87480690 | MS.gene059621:CDS | 35.0% | |
| TCAATCCATACAGTCCTAAA+TGG | - | chr6.2:87481339-87481358 | MS.gene059621:intron | 35.0% | |
| TCACCTTCACATCAATCTTA+TGG | - | chr6.2:87480731-87480750 | MS.gene059621:CDS | 35.0% | |
| TCATGAGAAGATTCTCTTGA+AGG | + | chr6.2:87480671-87480690 | None:intergenic | 35.0% | |
| TCTTCTTCTAGTAGAATCTC+TGG | - | chr6.2:87480770-87480789 | MS.gene059621:CDS | 35.0% | |
| TGACCATAAGATTGATGTGA+AGG | + | chr6.2:87480737-87480756 | None:intergenic | 35.0% | |
| TGAGTACTTGAGAAACTGTT+TGG | - | chr6.2:87482624-87482643 | MS.gene059621:intron | 35.0% | |
| TGTCAATATACAAGGAAGCA+AGG | - | chr6.2:87483203-87483222 | MS.gene059621:CDS | 35.0% | |
| TGTTACAATCTTGCCAATCA+CGG | - | chr6.2:87482002-87482021 | MS.gene059621:intron | 35.0% | |
| TTAAGACATCCCTCTTATCT+TGG | - | chr6.2:87481476-87481495 | MS.gene059621:intron | 35.0% | |
| TTCACTGTAAGCATCTTAGT+TGG | + | chr6.2:87482374-87482393 | None:intergenic | 35.0% | |
| TTTGCCTCGTGTACTTTATT+TGG | - | chr6.2:87481825-87481844 | MS.gene059621:intron | 35.0% | |
| ! | AGTCCTAAATGGTAGACTTT+TGG | - | chr6.2:87481350-87481369 | MS.gene059621:intron | 35.0% |
| ! | CATAACTTCTACTTTGGAGA+AGG | - | chr6.2:87482329-87482348 | MS.gene059621:intron | 35.0% |
| !! | AAAAAAGTTCTAGGCCTGTT+TGG | + | chr6.2:87482800-87482819 | None:intergenic | 35.0% |
| !! | AGTTCAAAATTGGCCTTTGA+AGG | - | chr6.2:87483049-87483068 | MS.gene059621:CDS | 35.0% |
| !! | GATTTTGATCGTGATCGAAA+TGG | - | chr6.2:87480896-87480915 | MS.gene059621:intron | 35.0% |
| !! | GTTTGATGTACTTGTTGTTG+TGG | + | chr6.2:87483389-87483408 | None:intergenic | 35.0% |
| !! | TTGATGTACTTGTTGTTGTG+GGG | + | chr6.2:87483387-87483406 | None:intergenic | 35.0% |
| !! | TTTGTGATCTTGGTGATGAT+GGG | + | chr6.2:87480622-87480641 | None:intergenic | 35.0% |
| !!! | CAGTTTTTCATTGCTGTTTG+TGG | - | chr6.2:87480935-87480954 | MS.gene059621:intron | 35.0% |
| !!! | GGAGTTTGTTTTTGTGATCT+TGG | + | chr6.2:87480632-87480651 | None:intergenic | 35.0% |
| !!! | GTTTTAATTAAGGCTCTGCT+TGG | - | chr6.2:87481080-87481099 | MS.gene059621:intron | 35.0% |
| !!! | TTTTGTGATCTTGGTGATGA+TGG | + | chr6.2:87480623-87480642 | None:intergenic | 35.0% |
| AAATGCCGAAGAAAGTTGCA+GGG | + | chr6.2:87482424-87482443 | None:intergenic | 40.0% | |
| AACAATGCAACCAAGTCCAA+TGG | - | chr6.2:87480706-87480725 | MS.gene059621:CDS | 40.0% | |
| AGACTGTTTGGGAAAGCTTA+TGG | + | chr6.2:87481283-87481302 | None:intergenic | 40.0% | |
| ATTAAGCTGGTCATCCAAAC+AGG | - | chr6.2:87482783-87482802 | MS.gene059621:intron | 40.0% | |
| CATAACCCTGCAACTTTCTT+CGG | - | chr6.2:87482416-87482435 | MS.gene059621:intron | 40.0% | |
| CATCCCTCTTATCTTGGATT+TGG | - | chr6.2:87481482-87481501 | MS.gene059621:intron | 40.0% | |
| CATGCCAAATCCAAGATAAG+AGG | + | chr6.2:87481489-87481508 | None:intergenic | 40.0% | |
| CATTTAAGCCACTCCTTCAA+AGG | + | chr6.2:87483065-87483084 | None:intergenic | 40.0% | |
| CTGTCCGTCAAAAAAGTTCT+AGG | + | chr6.2:87482809-87482828 | None:intergenic | 40.0% | |
| GTGAATGATAAAGGGTGGAT+TGG | - | chr6.2:87480836-87480855 | MS.gene059621:CDS | 40.0% | |
| GTTACAATCTTGCCAATCAC+GGG | - | chr6.2:87482003-87482022 | MS.gene059621:intron | 40.0% | |
| GTTCTGTTCAAGTGCATACA+TGG | - | chr6.2:87481658-87481677 | MS.gene059621:CDS | 40.0% | |
| GTTTGGATTGACTGAGAGTT+GGG | + | chr6.2:87481785-87481804 | None:intergenic | 40.0% | |
| TAAATGCCGAAGAAAGTTGC+AGG | + | chr6.2:87482425-87482444 | None:intergenic | 40.0% | |
| TCTGATCTTACAGTTGCAAC+CGG | - | chr6.2:87482476-87482495 | MS.gene059621:intron | 40.0% | |
| TCTTCTAGTAGAATCTCTGG+TGG | - | chr6.2:87480773-87480792 | MS.gene059621:CDS | 40.0% | |
| TGATGTGAAGGTGAATCCAT+TGG | + | chr6.2:87480725-87480744 | None:intergenic | 40.0% | |
| TGTTAGAATACTTACCTCGC+CGG | + | chr6.2:87482498-87482517 | None:intergenic | 40.0% | |
| TGTTTGGATTGACTGAGAGT+TGG | + | chr6.2:87481786-87481805 | None:intergenic | 40.0% | |
| TTGCATAACCTGCTTCATGA+GGG | - | chr6.2:87481891-87481910 | MS.gene059621:intron | 40.0% | |
| TTTCTTCAACTGCAGCAACA+TGG | + | chr6.2:87483148-87483167 | None:intergenic | 40.0% | |
| TTTGCATAACCTGCTTCATG+AGG | - | chr6.2:87481890-87481909 | MS.gene059621:intron | 40.0% | |
| ! | ACATGGATTGACGGTGAATT+TGG | - | chr6.2:87481675-87481694 | MS.gene059621:CDS | 40.0% |
| ! | CAAGTGCATACATGGATTGA+CGG | - | chr6.2:87481666-87481685 | MS.gene059621:CDS | 40.0% |
| ! | GTCTACCATTTAGGACTGTA+TGG | + | chr6.2:87481347-87481366 | None:intergenic | 40.0% |
| ! | TTTGGCATGATGTTTGAGAC+AGG | - | chr6.2:87481500-87481519 | MS.gene059621:intron | 40.0% |
| !! | AAAATTGGCCTTTGAAGGAG+TGG | - | chr6.2:87483054-87483073 | MS.gene059621:CDS | 40.0% |
| !! | TAAAGGGTGGATTGGATCTA+AGG | - | chr6.2:87480844-87480863 | MS.gene059621:intron | 40.0% |
| !! | TGATGTACTTGTTGTTGTGG+GGG | + | chr6.2:87483386-87483405 | None:intergenic | 40.0% |
| !! | TGCTGTTTGTGGGTTTGTTT+TGG | - | chr6.2:87480946-87480965 | MS.gene059621:intron | 40.0% |
| !!! | CAGGCCTAGAACTTTTTTGA+CGG | - | chr6.2:87482802-87482821 | MS.gene059621:intron | 40.0% |
| ATCGAAATGGAGTTTCGAGG+AGG | - | chr6.2:87480909-87480928 | MS.gene059621:intron | 45.0% | |
| CAATCCAAACATGCACCTAG+TGG | - | chr6.2:87481795-87481814 | MS.gene059621:intron | 45.0% | |
| CGGAAATGTTGTAGGCAAGT+TGG | - | chr6.2:87483314-87483333 | MS.gene059621:CDS | 45.0% | |
| CTTATGTCTGTAAGCTCACC+AGG | - | chr6.2:87482652-87482671 | MS.gene059621:intron | 45.0% | |
| GAAGGTGAATCCATTGGACT+TGG | + | chr6.2:87480719-87480738 | None:intergenic | 45.0% | |
| GCTAAGCACGAAAAATGGCA+GGG | + | chr6.2:87481967-87481986 | None:intergenic | 45.0% | |
| GTGATCGAAATGGAGTTTCG+AGG | - | chr6.2:87480906-87480925 | MS.gene059621:intron | 45.0% | |
| TACACCACTAGGTGCATGTT+TGG | + | chr6.2:87481802-87481821 | None:intergenic | 45.0% | |
| TATACCTTGACACTGAGCTG+AGG | + | chr6.2:87481022-87481041 | None:intergenic | 45.0% | |
| TATTGACAGACACTGTTCGG+CGG | + | chr6.2:87483191-87483210 | None:intergenic | 45.0% | |
| TCGAAATGGAGTTTCGAGGA+GGG | - | chr6.2:87480910-87480929 | MS.gene059621:intron | 45.0% | |
| TCGACGCTAAGCACGAAAAA+TGG | + | chr6.2:87481972-87481991 | None:intergenic | 45.0% | |
| TGAAGCAAGTAGCCAATGCA+AGG | + | chr6.2:87481053-87481072 | None:intergenic | 45.0% | |
| !! | ATGTTGTAGGCAAGTTGGTG+AGG | - | chr6.2:87483319-87483338 | MS.gene059621:CDS | 45.0% |
| !! | GTCTTTGAAGTTAAGTCGCG+CGG | - | chr6.2:87483294-87483313 | MS.gene059621:CDS | 45.0% |
| !!! | CTATTTTTGCGACCCGTGAT+TGG | + | chr6.2:87482018-87482037 | None:intergenic | 45.0% |
| AAGTCGCGCGGAAATGTTGT+AGG | - | chr6.2:87483306-87483325 | MS.gene059621:CDS | 50.0% | |
| ATACAACGCCCTCATGAAGC+AGG | + | chr6.2:87481902-87481921 | None:intergenic | 50.0% | |
| CAAACCTCAGCTCAGTGTCA+AGG | - | chr6.2:87481015-87481034 | MS.gene059621:intron | 50.0% | |
| CGCTAAGCACGAAAAATGGC+AGG | + | chr6.2:87481968-87481987 | None:intergenic | 50.0% | |
| GAGGCAAAGGATACACCACT+AGG | + | chr6.2:87481813-87481832 | None:intergenic | 50.0% | |
| GGAAGCAAGGTTCCGTTGTA+TGG | - | chr6.2:87483216-87483235 | MS.gene059621:CDS | 50.0% | |
| TGGTGCAGATGTTGCTAGCT+CGG | - | chr6.2:87483242-87483261 | MS.gene059621:CDS | 50.0% | |
| ! | GTTGCTAGCTCGGTGAACAA+CGG | - | chr6.2:87483252-87483271 | MS.gene059621:CDS | 50.0% |
| !! | CTTGTTGTTGTGGGGGTCAA+CGG | + | chr6.2:87483379-87483398 | None:intergenic | 50.0% |
| !! | TGCTTCATGAGGGCGTTGTA+TGG | - | chr6.2:87481901-87481920 | MS.gene059621:intron | 50.0% |
| AAGGTTCCGTTGTATGGCGC+TGG | - | chr6.2:87483222-87483241 | MS.gene059621:CDS | 55.0% | |
| TCTGCACCAGCGCCATACAA+CGG | + | chr6.2:87483231-87483250 | None:intergenic | 55.0% | |
| TCTTACAGTTGCAACCGGCG+AGG | - | chr6.2:87482481-87482500 | MS.gene059621:intron | 55.0% | |
| GGAGAAGGGTCAGACGTCAC+TGG | - | chr6.2:87482344-87482363 | MS.gene059621:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 87480581 | 87483440 | 87480581 | ID=MS.gene059621 |
| chr6.2 | mRNA | 87480581 | 87483440 | 87480581 | ID=MS.gene059621.t1;Parent=MS.gene059621 |
| chr6.2 | exon | 87482985 | 87483440 | 87482985 | ID=MS.gene059621.t1.exon1;Parent=MS.gene059621.t1 |
| chr6.2 | CDS | 87482985 | 87483440 | 87482985 | ID=cds.MS.gene059621.t1;Parent=MS.gene059621.t1 |
| chr6.2 | exon | 87481519 | 87481704 | 87481519 | ID=MS.gene059621.t1.exon2;Parent=MS.gene059621.t1 |
| chr6.2 | CDS | 87481519 | 87481704 | 87481519 | ID=cds.MS.gene059621.t1;Parent=MS.gene059621.t1 |
| chr6.2 | exon | 87480581 | 87480862 | 87480581 | ID=MS.gene059621.t1.exon3;Parent=MS.gene059621.t1 |
| chr6.2 | CDS | 87480581 | 87480862 | 87480581 | ID=cds.MS.gene059621.t1;Parent=MS.gene059621.t1 |
| Gene Sequence |
| Protein sequence |
