Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61466.t1 | XP_003609258.1 | 92.2 | 735 | 55 | 1 | 1 | 735 | 1 | 733 | 0.00E+00 | 1241.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61466.t1 | G7JV99 | 92.2 | 735 | 55 | 1 | 1 | 735 | 1 | 733 | 0.0e+00 | 1241.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene61466 | 0.803248 | 3.82E-49 | -1.69E-46 |
| MS.gene049153 | MS.gene61466 | 0.80994 | 1.48E-50 | -1.69E-46 |
| MS.gene052253 | MS.gene61466 | 0.804147 | 2.48E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene61466 | 0.800797 | 1.22E-48 | -1.69E-46 |
| MS.gene058928 | MS.gene61466 | 0.82271 | 2.05E-53 | -1.69E-46 |
| MS.gene059285 | MS.gene61466 | 0.818221 | 2.19E-52 | -1.69E-46 |
| MS.gene061159 | MS.gene61466 | 0.815486 | 9.02E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61466.t1 | MTR_4g113740 | 92.663 | 736 | 52 | 1 | 1 | 736 | 1 | 734 | 0.0 | 1377 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 133 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTATTGGTAATCTGTTTC+AGG | 0.184417 | 8.3:+13505000 | MS.gene61466:CDS |
| TTGCATAACTTCTTCTTTAC+TGG | 0.220317 | 8.3:-13505974 | None:intergenic |
| TGAAGAGAAGCATTTGAATT+TGG | 0.226730 | 8.3:+13505114 | MS.gene61466:CDS |
| ATCAAGGCCAGGAAACTTTC+AGG | 0.227868 | 8.3:+13505488 | MS.gene61466:CDS |
| ATCTTTCACTTGTATGTTAT+TGG | 0.231088 | 8.3:-13506990 | None:intergenic |
| GATGATAGTAGTAAATTAAA+TGG | 0.231494 | 8.3:+13505139 | MS.gene61466:CDS |
| TGAGAAATGAGAAGATTAAT+TGG | 0.232935 | 8.3:-13504251 | None:intergenic |
| ATGTCAGAGCCCTGTATAAT+TGG | 0.248707 | 8.3:+13506085 | MS.gene61466:CDS |
| TTCACAATTCAATCACAAAA+TGG | 0.270122 | 8.3:+13504318 | MS.gene61466:CDS |
| AACTTCTCCTTACTACTTCC+TGG | 0.283873 | 8.3:-13506914 | None:intergenic |
| AATTCTGAGAGAGAAAATTT+TGG | 0.287099 | 8.3:+13505235 | MS.gene61466:CDS |
| CAGAATCAAGCCGGCTTTCA+TGG | 0.297020 | 8.3:-13505399 | None:intergenic |
| TGAGGCTGAAAGAGTATTCT+TGG | 0.297065 | 8.3:+13506432 | MS.gene61466:CDS |
| TAAGAATAAGAAGATTAAAA+TGG | 0.299380 | 8.3:+13504799 | MS.gene61466:CDS |
| CAATGGCGATTTCTAGGGTT+AGG | 0.304696 | 8.3:+13504528 | MS.gene61466:CDS |
| CAGAAGTAGCTCGAAATGTT+AGG | 0.326770 | 8.3:-13504358 | None:intergenic |
| ATTCTTCTCAAGACTCGTTC+AGG | 0.328932 | 8.3:+13505170 | MS.gene61466:CDS |
| AGTGAGAAATTGAAGAGTTT+AGG | 0.333033 | 8.3:+13504713 | MS.gene61466:CDS |
| AAAACGTAGTAGAATAATTA+AGG | 0.334312 | 8.3:+13505933 | MS.gene61466:CDS |
| CGGAAACGATCGTGAAAATA+AGG | 0.341119 | 8.3:-13504278 | None:intergenic |
| GGAAACACTTATCTTCTTCA+TGG | 0.347881 | 8.3:+13505841 | MS.gene61466:CDS |
| TTTGTGCAATGGCGATTTCT+AGG | 0.347927 | 8.3:+13504522 | MS.gene61466:CDS |
| AAGCAACTGCTCACGCAAAA+AGG | 0.352337 | 8.3:-13505464 | None:intergenic |
| GCATCTACATCAACTGTCTA+TGG | 0.362918 | 8.3:+13504380 | MS.gene61466:CDS |
| TTCAAATGCTTCTCTTCAAC+CGG | 0.364414 | 8.3:-13505109 | None:intergenic |
| TCTTCATACCGAGACCTATC+AGG | 0.367694 | 8.3:-13505538 | None:intergenic |
| ATACGAAGACGCTCTTGATA+TGG | 0.369250 | 8.3:+13506964 | MS.gene61466:CDS |
| GGAAAAGTGTAATGGTGTTT+TGG | 0.373094 | 8.3:+13504913 | MS.gene61466:CDS |
| AGGCTTTAAGTCCACAGCTT+TGG | 0.380971 | 8.3:-13505791 | None:intergenic |
| ATTAAAATGGATGATTTGTA+TGG | 0.407609 | 8.3:+13504812 | MS.gene61466:CDS |
| ATGGACAGAAATGGAAGAAT+AGG | 0.411172 | 8.3:+13505208 | MS.gene61466:CDS |
| TATCAGATGCTGCAATCTAT+TGG | 0.411506 | 8.3:+13504986 | MS.gene61466:CDS |
| TACAGCAGAGATCTCGCTTA+AGG | 0.412812 | 8.3:+13506891 | MS.gene61466:CDS |
| TGTCAGAGCCCTGTATAATT+GGG | 0.417133 | 8.3:+13506086 | MS.gene61466:CDS |
| GAATGGAAGGAATTATGTTA+AGG | 0.421693 | 8.3:+13504874 | MS.gene61466:CDS |
| TAGAAGACCTGAAAGTTTCC+TGG | 0.424733 | 8.3:-13505495 | None:intergenic |
| GAAGTTGAAGTTACTTCAGC+AGG | 0.427912 | 8.3:+13506931 | MS.gene61466:CDS |
| AAAGAAAAGAGTATAGTTAC+CGG | 0.428449 | 8.3:+13505296 | MS.gene61466:CDS |
| CTCGCCAGCTCAGAAGCTTC+CGG | 0.428655 | 8.3:+13504416 | MS.gene61466:CDS |
| AAGAAACAAGTTGGAGAAGC+TGG | 0.428878 | 8.3:+13504962 | MS.gene61466:CDS |
| AAGGTGAGTGGAAGTGGAAG+TGG | 0.431628 | 8.3:+13504650 | MS.gene61466:CDS |
| CGTGAGCAGTTGCTTAATCA+AGG | 0.434199 | 8.3:+13505472 | MS.gene61466:CDS |
| GTGCAAGGCCCCAATTATAC+AGG | 0.434643 | 8.3:-13506095 | None:intergenic |
| CCATAGCATCTCTTTGAAGA+TGG | 0.435236 | 8.3:+13505345 | MS.gene61466:CDS |
| AGCTTTGTTCAGATGGGGTA+TGG | 0.435338 | 8.3:+13506865 | MS.gene61466:intron |
| TGAACCTCAATCCTTTGTTC+CGG | 0.435438 | 8.3:-13505315 | None:intergenic |
| TTTGTAAAGGGTACTTATGA+TGG | 0.439273 | 8.3:+13505724 | MS.gene61466:CDS |
| AGAAAATGTGAAGAGGCAAT+TGG | 0.446353 | 8.3:+13505057 | MS.gene61466:CDS |
| ATCAACTGTCTATGGTGGTT+GGG | 0.446543 | 8.3:+13504388 | MS.gene61466:CDS |
| ATGATAGTAGTAAATTAAAT+GGG | 0.449234 | 8.3:+13505140 | MS.gene61466:CDS |
| CTTAAAGCCTATGAGTTTGT+TGG | 0.455199 | 8.3:+13505804 | MS.gene61466:CDS |
| ATAAAGTTGTCATCTTTGAA+TGG | 0.455324 | 8.3:+13504857 | MS.gene61466:CDS |
| TAGTAAATTAAATGGGAAGT+TGG | 0.455875 | 8.3:+13505147 | MS.gene61466:CDS |
| CCACATGTCTGTCACACTGC+TGG | 0.460760 | 8.3:-13505371 | None:intergenic |
| CAAGCAAAAGAGTTTGTAAA+GGG | 0.460977 | 8.3:+13505712 | MS.gene61466:CDS |
| AAAGGAACAGTGGGCCTGAT+AGG | 0.461163 | 8.3:+13505524 | MS.gene61466:CDS |
| AGGAAACGGTGCTTTGCCTC+CGG | 0.463044 | 8.3:+13505090 | MS.gene61466:CDS |
| GGTAGAAGAAAGAAACAAGT+TGG | 0.467933 | 8.3:+13504953 | MS.gene61466:CDS |
| CCTACAGCCAACAAACTCAT+AGG | 0.471224 | 8.3:-13505811 | None:intergenic |
| TATTCTTCCAGCTTCTGCTA+TGG | 0.472083 | 8.3:+13504565 | MS.gene61466:CDS |
| TCAGGTCTTCTATCGACAAA+AGG | 0.473346 | 8.3:+13505506 | MS.gene61466:CDS |
| GAATTGTGAAGAAGAAATGA+AGG | 0.474744 | 8.3:-13504305 | None:intergenic |
| GAATTGCAGCTTTGTTCAGA+TGG | 0.476823 | 8.3:+13506858 | MS.gene61466:intron |
| GGTCAATTGATAGCAGATAT+TGG | 0.485601 | 8.3:+13506129 | MS.gene61466:CDS |
| GAATTAAAGGTGAGTGGAAG+TGG | 0.487193 | 8.3:+13504644 | MS.gene61466:CDS |
| GTGGAAGTGGAAGTAGTTTG+AGG | 0.488186 | 8.3:+13504663 | MS.gene61466:CDS |
| AATGGCGATTTCTAGGGTTA+GGG | 0.489600 | 8.3:+13504529 | MS.gene61466:CDS |
| CTCAGAGACACACAAGGATA+AGG | 0.489613 | 8.3:-13507014 | None:intergenic |
| TTCGCAATTGGTTATAGCGT+AGG | 0.489973 | 8.3:+13504590 | MS.gene61466:CDS |
| GGTATGAAGAAGATAGAGAT+AGG | 0.491937 | 8.3:+13505551 | MS.gene61466:CDS |
| TCGCAATTGGTTATAGCGTA+GGG | 0.496989 | 8.3:+13504591 | MS.gene61466:CDS |
| TTGTGCAATGGCGATTTCTA+GGG | 0.499663 | 8.3:+13504523 | MS.gene61466:CDS |
| AGTTGTCATCTTTGAATGGA+AGG | 0.500075 | 8.3:+13504861 | MS.gene61466:CDS |
| TTGGATCAAACTCGAGGAAA+CGG | 0.500384 | 8.3:+13505076 | MS.gene61466:CDS |
| AGTTACTTCAGCAGGCTAAA+CGG | 0.501792 | 8.3:+13506939 | MS.gene61466:CDS |
| CTTAAGGCCAGGAAGTAGTA+AGG | 0.502992 | 8.3:+13506907 | MS.gene61466:CDS |
| ACAAGCAAAAGAGTTTGTAA+AGG | 0.503743 | 8.3:+13505711 | MS.gene61466:CDS |
| TGAAGAGTGCGAAGAGCTAC+TGG | 0.504995 | 8.3:+13506014 | MS.gene61466:CDS |
| AGAAGTAGCTCGAAATGTTA+GGG | 0.507578 | 8.3:-13504357 | None:intergenic |
| TTCTTCTCAAGACTCGTTCA+GGG | 0.509514 | 8.3:+13505171 | MS.gene61466:CDS |
| AGAATCAAGCCGGCTTTCAT+GGG | 0.514482 | 8.3:-13505398 | None:intergenic |
| CATCAACTGTCTATGGTGGT+TGG | 0.516503 | 8.3:+13504387 | MS.gene61466:CDS |
| CCATCTTCAAAGAGATGCTA+TGG | 0.520456 | 8.3:-13505345 | None:intergenic |
| AATTGCAGCTTTGTTCAGAT+GGG | 0.520765 | 8.3:+13506859 | MS.gene61466:intron |
| CAGAGATCTCGCTTAAGGCC+AGG | 0.524948 | 8.3:+13506896 | MS.gene61466:CDS |
| GGGGATAATCACAGAAGTGC+TGG | 0.525777 | 8.3:+13505262 | MS.gene61466:CDS |
| CTTTGATGAGATTGATGTTG+TGG | 0.528417 | 8.3:+13504742 | MS.gene61466:CDS |
| AAGTGGAAGTAGTTTGAGGA+AGG | 0.530466 | 8.3:+13504667 | MS.gene61466:CDS |
| GAAGAAGAAATGAAGGGTTA+CGG | 0.530867 | 8.3:-13504298 | None:intergenic |
| TGAACTGAGAAATCTTCTCT+CGG | 0.532743 | 8.3:+13505888 | MS.gene61466:CDS |
| GCGAAAACCATAGCAGAAGC+TGG | 0.546171 | 8.3:-13504572 | None:intergenic |
| GAACTGAGAAATCTTCTCTC+GGG | 0.552033 | 8.3:+13505889 | MS.gene61466:CDS |
| GGCCTTGCACTTTCTTTCCG+CGG | 0.554567 | 8.3:+13506108 | MS.gene61466:CDS |
| TAATGCTTTCAGAATCAAGC+CGG | 0.555653 | 8.3:-13505408 | None:intergenic |
| TGCAGGAAGAAAGTATAGAC+TGG | 0.557667 | 8.3:+13506041 | MS.gene61466:CDS |
| TTGTTGGCTGTAGGACAGCT+AGG | 0.559369 | 8.3:+13505820 | MS.gene61466:CDS |
| ACAGTGGGCCTGATAGGTCT+CGG | 0.561636 | 8.3:+13505530 | MS.gene61466:CDS |
| TGTGGGAATCCCATGAAAGC+CGG | 0.565558 | 8.3:+13505389 | MS.gene61466:CDS |
| GTTACCGGAACAAAGGATTG+AGG | 0.566473 | 8.3:+13505311 | MS.gene61466:CDS |
| CATGGGGATTGTTTGTGCAA+TGG | 0.569270 | 8.3:+13504511 | MS.gene61466:CDS |
| GATAATGAGGAAAAGTGTAA+TGG | 0.573362 | 8.3:+13504905 | MS.gene61466:CDS |
| GTCATCAGCAAGTAATTCAT+CGG | 0.575027 | 8.3:-13505587 | None:intergenic |
| ATTGATAGCAGATATTGGTC+CGG | 0.577392 | 8.3:+13506134 | MS.gene61466:CDS |
| CTCACCGGAAGCTTCTGAGC+TGG | 0.577535 | 8.3:-13504420 | None:intergenic |
| GCAGTTGCTTAATCAAGGCC+AGG | 0.578217 | 8.3:+13505477 | MS.gene61466:CDS |
| CTATCGACAAAAGGAACAGT+GGG | 0.594453 | 8.3:+13505515 | MS.gene61466:CDS |
| GAGTATAGTTACCGGAACAA+AGG | 0.597131 | 8.3:+13505304 | MS.gene61466:CDS |
| CCAGCAGTGTGACAGACATG+TGG | 0.599688 | 8.3:+13505371 | MS.gene61466:CDS |
| TTTGATGCTATGCTGTTGAA+AGG | 0.601768 | 8.3:+13506469 | MS.gene61466:CDS |
| CCTATGAGTTTGTTGGCTGT+AGG | 0.602332 | 8.3:+13505811 | MS.gene61466:CDS |
| TAGATATCTCGCTGAAGCAA+CGG | 0.605301 | 8.3:+13505678 | MS.gene61466:CDS |
| GAAGAGCTACTGGTAAATGC+AGG | 0.605514 | 8.3:+13506024 | MS.gene61466:CDS |
| GGAAATGTTTATGCACCAGA+TGG | 0.610369 | 8.3:+13506490 | MS.gene61466:CDS |
| AAATGCTTCTCTTCAACCGG+AGG | 0.610870 | 8.3:-13505106 | None:intergenic |
| GACCGCGGAAAGAAAGTGCA+AGG | 0.613769 | 8.3:-13506110 | None:intergenic |
| GTCAGAGCCCTGTATAATTG+GGG | 0.615040 | 8.3:+13506087 | MS.gene61466:CDS |
| AAGTCAGAGAAAATGTGAAG+AGG | 0.615261 | 8.3:+13505050 | MS.gene61466:CDS |
| AATTGTGAAGAAGAAATGAA+GGG | 0.615706 | 8.3:-13504304 | None:intergenic |
| CAGCAGTGTGACAGACATGT+GGG | 0.623893 | 8.3:+13505372 | MS.gene61466:CDS |
| ATTGCAGCTTTGTTCAGATG+GGG | 0.624119 | 8.3:+13506860 | MS.gene61466:intron |
| TTGGTTGAGAATCATAAGGG+TGG | 0.637819 | 8.3:+13504932 | MS.gene61466:CDS |
| TCGCAACGAATCAAACTCAC+CGG | 0.640153 | 8.3:-13504435 | None:intergenic |
| TTCGGCGAATTAAAGGTGAG+TGG | 0.646198 | 8.3:+13504638 | MS.gene61466:CDS |
| TGCAAGGCCCCAATTATACA+GGG | 0.654637 | 8.3:-13506094 | None:intergenic |
| AGGCAATTGGATCAAACTCG+AGG | 0.661797 | 8.3:+13505070 | MS.gene61466:CDS |
| TAAAGTCAGAATGAAACGCG+TGG | 0.665756 | 8.3:+13505429 | MS.gene61466:CDS |
| TCTATCGACAAAAGGAACAG+TGG | 0.667466 | 8.3:+13505514 | MS.gene61466:CDS |
| TCTACATCAACTGTCTATGG+TGG | 0.681416 | 8.3:+13504383 | MS.gene61466:CDS |
| AAGTTTACTCTCCAAAGCTG+TGG | 0.683375 | 8.3:+13505780 | MS.gene61466:CDS |
| TCAATCACAAAATGGACACG+TGG | 0.694248 | 8.3:+13504326 | MS.gene61466:CDS |
| GTTAAGCTCAGAGACACACA+AGG | 0.722979 | 8.3:-13507020 | None:intergenic |
| TTGCACAAACAATCCCCATG+AGG | 0.735544 | 8.3:-13504508 | None:intergenic |
| TATCTGCTATCAATTGACCG+CGG | 0.787018 | 8.3:-13506125 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGATAGTAGTAAATTAAAT+GGG | + | chr8.3:13505140-13505159 | MS.gene61466:CDS | 15.0% |
| !! | TAAGAATAAGAAGATTAAAA+TGG | + | chr8.3:13504799-13504818 | MS.gene61466:CDS | 15.0% |
| !!! | ATAATTTGCAACTTATATTA+AGG | - | chr8.3:13506756-13506775 | None:intergenic | 15.0% |
| !!! | TCTAAAATGATTGTATAAAT+TGG | + | chr8.3:13506261-13506280 | MS.gene61466:intron | 15.0% |
| !! | AAAACGTAGTAGAATAATTA+AGG | + | chr8.3:13505933-13505952 | MS.gene61466:CDS | 20.0% |
| !! | AAATGTCTCTTCATATATAT+AGG | + | chr8.3:13506399-13506418 | MS.gene61466:intron | 20.0% |
| !! | AATGTCTCTTCATATATATA+GGG | + | chr8.3:13506400-13506419 | MS.gene61466:intron | 20.0% |
| !! | GATGATAGTAGTAAATTAAA+TGG | + | chr8.3:13505139-13505158 | MS.gene61466:CDS | 20.0% |
| !! | TGCAAATTATCTATGTTAAA+TGG | + | chr8.3:13506766-13506785 | MS.gene61466:intron | 20.0% |
| !!! | ATTAAAATGGATGATTTGTA+TGG | + | chr8.3:13504812-13504831 | MS.gene61466:CDS | 20.0% |
| ! | AATGACAAGATAATACATAC+CGG | - | chr8.3:13506156-13506175 | None:intergenic | 25.0% |
| ! | AATTGTGAAGAAGAAATGAA+GGG | - | chr8.3:13504307-13504326 | None:intergenic | 25.0% |
| ! | ATAAAGTTGTCATCTTTGAA+TGG | + | chr8.3:13504857-13504876 | MS.gene61466:CDS | 25.0% |
| ! | ATCTTTCACTTGTATGTTAT+TGG | - | chr8.3:13506993-13507012 | None:intergenic | 25.0% |
| ! | ATGTACAACAAAAATCATCA+TGG | - | chr8.3:13506364-13506383 | None:intergenic | 25.0% |
| ! | TAGTAAATTAAATGGGAAGT+TGG | + | chr8.3:13505147-13505166 | MS.gene61466:CDS | 25.0% |
| ! | TGAGAAATGAGAAGATTAAT+TGG | - | chr8.3:13504254-13504273 | None:intergenic | 25.0% |
| ! | TTCACAATTCAATCACAAAA+TGG | + | chr8.3:13504318-13504337 | MS.gene61466:CDS | 25.0% |
| !! | AAAGAAAAGAGTATAGTTAC+CGG | + | chr8.3:13505296-13505315 | MS.gene61466:CDS | 25.0% |
| !! | AACTATACTCTTTTCTTTCA+GGG | - | chr8.3:13505294-13505313 | None:intergenic | 25.0% |
| !! | TAACTATACTCTTTTCTTTC+AGG | - | chr8.3:13505295-13505314 | None:intergenic | 25.0% |
| !!! | AATTCTGAGAGAGAAAATTT+TGG | + | chr8.3:13505235-13505254 | MS.gene61466:CDS | 25.0% |
| !!! | CTTCTTCATTCAATTTGTTA+AGG | + | chr8.3:13506194-13506213 | MS.gene61466:intron | 25.0% |
| !!! | TAAGGTTTTGATTGATAATG+AGG | + | chr8.3:13504892-13504911 | MS.gene61466:CDS | 25.0% |
| ACAAGCAAAAGAGTTTGTAA+AGG | + | chr8.3:13505711-13505730 | MS.gene61466:CDS | 30.0% | |
| AGTGAGAAATTGAAGAGTTT+AGG | + | chr8.3:13504713-13504732 | MS.gene61466:CDS | 30.0% | |
| AGTTATGTGTTATGTGAACA+AGG | - | chr8.3:13506613-13506632 | None:intergenic | 30.0% | |
| ATAACAGTATGTAATCTGCT+GGG | - | chr8.3:13506234-13506253 | None:intergenic | 30.0% | |
| ATATTATGCTGACCATTTCT+CGG | + | chr8.3:13506580-13506599 | MS.gene61466:intron | 30.0% | |
| CAAAAATCATCATGGTTAAC+TGG | - | chr8.3:13506356-13506375 | None:intergenic | 30.0% | |
| CAAGCAAAAGAGTTTGTAAA+GGG | + | chr8.3:13505712-13505731 | MS.gene61466:CDS | 30.0% | |
| GAATGGAAGGAATTATGTTA+AGG | + | chr8.3:13504874-13504893 | MS.gene61466:CDS | 30.0% | |
| GAATTGTGAAGAAGAAATGA+AGG | - | chr8.3:13504308-13504327 | None:intergenic | 30.0% | |
| TATAACAGTATGTAATCTGC+TGG | - | chr8.3:13506235-13506254 | None:intergenic | 30.0% | |
| TATTATCTCCTGTACTAACT+TGG | + | chr8.3:13506822-13506841 | MS.gene61466:intron | 30.0% | |
| TTGCATAACTTCTTCTTTAC+TGG | - | chr8.3:13505977-13505996 | None:intergenic | 30.0% | |
| TTGTTCACATAACACATAAC+TGG | + | chr8.3:13506612-13506631 | MS.gene61466:intron | 30.0% | |
| ! | ACTATACTCTTTTCTTTCAG+GGG | - | chr8.3:13505293-13505312 | None:intergenic | 30.0% |
| ! | ATCTATTGGTAATCTGTTTC+AGG | + | chr8.3:13505000-13505019 | MS.gene61466:CDS | 30.0% |
| ! | GATAATGAGGAAAAGTGTAA+TGG | + | chr8.3:13504905-13504924 | MS.gene61466:CDS | 30.0% |
| ! | TTTTGCGAAACGGTAATTTT+TGG | + | chr8.3:13504615-13504634 | MS.gene61466:CDS | 30.0% |
| !! | AATGCATTTGTTTTCCTCAT+GGG | + | chr8.3:13504494-13504513 | MS.gene61466:CDS | 30.0% |
| !! | AGAGAGAAAATTTTGGTGTA+GGG | + | chr8.3:13505242-13505261 | MS.gene61466:CDS | 30.0% |
| !! | CGAAATTTTCTTGTTTCAGT+TGG | + | chr8.3:13504455-13504474 | MS.gene61466:CDS | 30.0% |
| !! | GTTTTAGATATGGACAGAAA+TGG | + | chr8.3:13505199-13505218 | MS.gene61466:CDS | 30.0% |
| !! | TGAAGAGAAGCATTTGAATT+TGG | + | chr8.3:13505114-13505133 | MS.gene61466:CDS | 30.0% |
| !! | TTTGTAAAGGGTACTTATGA+TGG | + | chr8.3:13505724-13505743 | MS.gene61466:CDS | 30.0% |
| !!! | GTTTTGGTTGAGAATCATAA+GGG | + | chr8.3:13504929-13504948 | MS.gene61466:CDS | 30.0% |
| !!! | TGTTTTGGTTGAGAATCATA+AGG | + | chr8.3:13504928-13504947 | MS.gene61466:CDS | 30.0% |
| AAGTCAGAGAAAATGTGAAG+AGG | + | chr8.3:13505050-13505069 | MS.gene61466:CDS | 35.0% | |
| AGAAAATGTGAAGAGGCAAT+TGG | + | chr8.3:13505057-13505076 | MS.gene61466:CDS | 35.0% | |
| AGAAGTAGCTCGAAATGTTA+GGG | - | chr8.3:13504360-13504379 | None:intergenic | 35.0% | |
| AGTTGTCATCTTTGAATGGA+AGG | + | chr8.3:13504861-13504880 | MS.gene61466:CDS | 35.0% | |
| ATGGACAGAAATGGAAGAAT+AGG | + | chr8.3:13505208-13505227 | MS.gene61466:CDS | 35.0% | |
| CTTAAAGCCTATGAGTTTGT+TGG | + | chr8.3:13505804-13505823 | MS.gene61466:CDS | 35.0% | |
| CTTTGATGAGATTGATGTTG+TGG | + | chr8.3:13504742-13504761 | MS.gene61466:CDS | 35.0% | |
| GAAGAAGAAATGAAGGGTTA+CGG | - | chr8.3:13504301-13504320 | None:intergenic | 35.0% | |
| GGAAACACTTATCTTCTTCA+TGG | + | chr8.3:13505841-13505860 | MS.gene61466:CDS | 35.0% | |
| GGTAGAAGAAAGAAACAAGT+TGG | + | chr8.3:13504953-13504972 | MS.gene61466:CDS | 35.0% | |
| GGTATGAAGAAGATAGAGAT+AGG | + | chr8.3:13505551-13505570 | MS.gene61466:CDS | 35.0% | |
| GTCATCAGCAAGTAATTCAT+CGG | - | chr8.3:13505590-13505609 | None:intergenic | 35.0% | |
| GTGAAAATCCAAGTTAGTAC+AGG | - | chr8.3:13506833-13506852 | None:intergenic | 35.0% | |
| TAACAGTATGTAATCTGCTG+GGG | - | chr8.3:13506233-13506252 | None:intergenic | 35.0% | |
| TAATGCTTTCAGAATCAAGC+CGG | - | chr8.3:13505411-13505430 | None:intergenic | 35.0% | |
| TATCAGATGCTGCAATCTAT+TGG | + | chr8.3:13504986-13505005 | MS.gene61466:CDS | 35.0% | |
| TGAAAAACTGCACTGAGAAT+AGG | + | chr8.3:13506667-13506686 | MS.gene61466:intron | 35.0% | |
| TGAACTGAGAAATCTTCTCT+CGG | + | chr8.3:13505888-13505907 | MS.gene61466:CDS | 35.0% | |
| TGCACTGAGAATAGGAATTT+AGG | + | chr8.3:13506675-13506694 | MS.gene61466:intron | 35.0% | |
| TTCAAATGCTTCTCTTCAAC+CGG | - | chr8.3:13505112-13505131 | None:intergenic | 35.0% | |
| TTTGATGCTATGCTGTTGAA+AGG | + | chr8.3:13506469-13506488 | MS.gene61466:CDS | 35.0% | |
| ! | ATTGATAGCAGATATTGGTC+CGG | + | chr8.3:13506134-13506153 | MS.gene61466:CDS | 35.0% |
| ! | CTGAAACTTTTGTAGACGAA+GGG | - | chr8.3:13505642-13505661 | None:intergenic | 35.0% |
| ! | CTTCACATTTTCTCTGACTT+TGG | - | chr8.3:13505050-13505069 | None:intergenic | 35.0% |
| ! | GGTCAATTGATAGCAGATAT+TGG | + | chr8.3:13506129-13506148 | MS.gene61466:CDS | 35.0% |
| ! | TGAAACTTTTGTAGACGAAG+GGG | - | chr8.3:13505641-13505660 | None:intergenic | 35.0% |
| !! | AATTGCAGCTTTGTTCAGAT+GGG | + | chr8.3:13506859-13506878 | MS.gene61466:intron | 35.0% |
| !! | ATGCATTTGTTTTCCTCATG+GGG | + | chr8.3:13504495-13504514 | MS.gene61466:CDS | 35.0% |
| !! | GAATGCATTTGTTTTCCTCA+TGG | + | chr8.3:13504493-13504512 | MS.gene61466:CDS | 35.0% |
| !! | GAGAGAAAATTTTGGTGTAG+GGG | + | chr8.3:13505243-13505262 | MS.gene61466:CDS | 35.0% |
| !! | GAGAGAGAAAATTTTGGTGT+AGG | + | chr8.3:13505241-13505260 | MS.gene61466:CDS | 35.0% |
| !! | GGAAAAGTGTAATGGTGTTT+TGG | + | chr8.3:13504913-13504932 | MS.gene61466:CDS | 35.0% |
| !! | TCTGAAACTTTTGTAGACGA+AGG | - | chr8.3:13505643-13505662 | None:intergenic | 35.0% |
| !!! | CGAAACGGTAATTTTTGGTT+CGG | + | chr8.3:13504620-13504639 | MS.gene61466:CDS | 35.0% |
| !!! | TTTTTGGTTCGGCGAATTAA+AGG | + | chr8.3:13504631-13504650 | MS.gene61466:CDS | 35.0% |
| AACTTCTCCTTACTACTTCC+TGG | - | chr8.3:13506917-13506936 | None:intergenic | 40.0% | |
| AAGTGGAAGTAGTTTGAGGA+AGG | + | chr8.3:13504667-13504686 | MS.gene61466:CDS | 40.0% | |
| AAGTTTACTCTCCAAAGCTG+TGG | + | chr8.3:13505780-13505799 | MS.gene61466:CDS | 40.0% | |
| AGTTACTTCAGCAGGCTAAA+CGG | + | chr8.3:13506939-13506958 | MS.gene61466:CDS | 40.0% | |
| ATACGAAGACGCTCTTGATA+TGG | + | chr8.3:13506964-13506983 | MS.gene61466:CDS | 40.0% | |
| ATCAACTGTCTATGGTGGTT+GGG | + | chr8.3:13504388-13504407 | MS.gene61466:CDS | 40.0% | |
| ATGTCAGAGCCCTGTATAAT+TGG | + | chr8.3:13506085-13506104 | MS.gene61466:CDS | 40.0% | |
| ATTCTTCTCAAGACTCGTTC+AGG | + | chr8.3:13505170-13505189 | MS.gene61466:CDS | 40.0% | |
| CAGAAGTAGCTCGAAATGTT+AGG | - | chr8.3:13504361-13504380 | None:intergenic | 40.0% | |
| CCATCTTCAAAGAGATGCTA+TGG | - | chr8.3:13505348-13505367 | None:intergenic | 40.0% | |
| CGGAAACGATCGTGAAAATA+AGG | - | chr8.3:13504281-13504300 | None:intergenic | 40.0% | |
| CTATCGACAAAAGGAACAGT+GGG | + | chr8.3:13505515-13505534 | MS.gene61466:CDS | 40.0% | |
| GAACTGAGAAATCTTCTCTC+GGG | + | chr8.3:13505889-13505908 | MS.gene61466:CDS | 40.0% | |
| GAAGTTGAAGTTACTTCAGC+AGG | + | chr8.3:13506931-13506950 | MS.gene61466:CDS | 40.0% | |
| GAATTAAAGGTGAGTGGAAG+TGG | + | chr8.3:13504644-13504663 | MS.gene61466:CDS | 40.0% | |
| GAGTATAGTTACCGGAACAA+AGG | + | chr8.3:13505304-13505323 | MS.gene61466:CDS | 40.0% | |
| GCATCTACATCAACTGTCTA+TGG | + | chr8.3:13504380-13504399 | MS.gene61466:CDS | 40.0% | |
| GCTGTTGCAGAATTTCTTCA+TGG | + | chr8.3:13506795-13506814 | MS.gene61466:intron | 40.0% | |
| GGAAATGTTTATGCACCAGA+TGG | + | chr8.3:13506490-13506509 | MS.gene61466:CDS | 40.0% | |
| TAAAGTCAGAATGAAACGCG+TGG | + | chr8.3:13505429-13505448 | MS.gene61466:CDS | 40.0% | |
| TAGAAGACCTGAAAGTTTCC+TGG | - | chr8.3:13505498-13505517 | None:intergenic | 40.0% | |
| TAGATATCTCGCTGAAGCAA+CGG | + | chr8.3:13505678-13505697 | MS.gene61466:CDS | 40.0% | |
| TATCTGCTATCAATTGACCG+CGG | - | chr8.3:13506128-13506147 | None:intergenic | 40.0% | |
| TATTCTTCCAGCTTCTGCTA+TGG | + | chr8.3:13504565-13504584 | MS.gene61466:CDS | 40.0% | |
| TCAATCACAAAATGGACACG+TGG | + | chr8.3:13504326-13504345 | MS.gene61466:CDS | 40.0% | |
| TCACATACAAGCACAACTAG+AGG | + | chr8.3:13506557-13506576 | MS.gene61466:intron | 40.0% | |
| TCAGGTCTTCTATCGACAAA+AGG | + | chr8.3:13505506-13505525 | MS.gene61466:CDS | 40.0% | |
| TCGCAATTGGTTATAGCGTA+GGG | + | chr8.3:13504591-13504610 | MS.gene61466:CDS | 40.0% | |
| TCTACATCAACTGTCTATGG+TGG | + | chr8.3:13504383-13504402 | MS.gene61466:CDS | 40.0% | |
| TCTATCGACAAAAGGAACAG+TGG | + | chr8.3:13505514-13505533 | MS.gene61466:CDS | 40.0% | |
| TGAACCTCAATCCTTTGTTC+CGG | - | chr8.3:13505318-13505337 | None:intergenic | 40.0% | |
| TGTCAGAGCCCTGTATAATT+GGG | + | chr8.3:13506086-13506105 | MS.gene61466:CDS | 40.0% | |
| TTCGCAATTGGTTATAGCGT+AGG | + | chr8.3:13504590-13504609 | MS.gene61466:CDS | 40.0% | |
| TTCTTCTCAAGACTCGTTCA+GGG | + | chr8.3:13505171-13505190 | MS.gene61466:CDS | 40.0% | |
| TTGGATCAAACTCGAGGAAA+CGG | + | chr8.3:13505076-13505095 | MS.gene61466:CDS | 40.0% | |
| TTGGTTGAGAATCATAAGGG+TGG | + | chr8.3:13504932-13504951 | MS.gene61466:CDS | 40.0% | |
| TTGTGCAATGGCGATTTCTA+GGG | + | chr8.3:13504523-13504542 | MS.gene61466:CDS | 40.0% | |
| TTTGTGCAATGGCGATTTCT+AGG | + | chr8.3:13504522-13504541 | MS.gene61466:CDS | 40.0% | |
| ! | AAGAAACAAGTTGGAGAAGC+TGG | + | chr8.3:13504962-13504981 | MS.gene61466:CDS | 40.0% |
| ! | CACATTTTCTCTGACTTTGG+TGG | - | chr8.3:13505047-13505066 | None:intergenic | 40.0% |
| ! | CCATAGCATCTCTTTGAAGA+TGG | + | chr8.3:13505345-13505364 | MS.gene61466:CDS | 40.0% |
| ! | TCTGCTATGGTTTTCGCAAT+TGG | + | chr8.3:13504578-13504597 | MS.gene61466:CDS | 40.0% |
| ! | TGCAGGAAGAAAGTATAGAC+TGG | + | chr8.3:13506041-13506060 | MS.gene61466:CDS | 40.0% |
| !! | AATGGCGATTTCTAGGGTTA+GGG | + | chr8.3:13504529-13504548 | MS.gene61466:CDS | 40.0% |
| !! | ATTGCAGCTTTGTTCAGATG+GGG | + | chr8.3:13506860-13506879 | MS.gene61466:intron | 40.0% |
| !! | CAGGGACTCTGTTTTAGATA+TGG | + | chr8.3:13505189-13505208 | MS.gene61466:CDS | 40.0% |
| !! | GAATTGCAGCTTTGTTCAGA+TGG | + | chr8.3:13506858-13506877 | MS.gene61466:intron | 40.0% |
| !! | TGAGGCTGAAAGAGTATTCT+TGG | + | chr8.3:13506432-13506451 | MS.gene61466:CDS | 40.0% |
| !!! | TATATAGGGTGCTGCTTTTG+AGG | + | chr8.3:13506414-13506433 | MS.gene61466:intron | 40.0% |
| AAATGCTTCTCTTCAACCGG+AGG | - | chr8.3:13505109-13505128 | None:intergenic | 45.0% | |
| AAGCAACTGCTCACGCAAAA+AGG | - | chr8.3:13505467-13505486 | None:intergenic | 45.0% | |
| ACAGCGCATGTAATACCATC+TGG | - | chr8.3:13506508-13506527 | None:intergenic | 45.0% | |
| AGGCAATTGGATCAAACTCG+AGG | + | chr8.3:13505070-13505089 | MS.gene61466:CDS | 45.0% | |
| ATCAAGGCCAGGAAACTTTC+AGG | + | chr8.3:13505488-13505507 | MS.gene61466:CDS | 45.0% | |
| CAAGGTATGTCACCGAGAAA+TGG | - | chr8.3:13506595-13506614 | None:intergenic | 45.0% | |
| CATCAACTGTCTATGGTGGT+TGG | + | chr8.3:13504387-13504406 | MS.gene61466:CDS | 45.0% | |
| CATGGGGATTGTTTGTGCAA+TGG | + | chr8.3:13504511-13504530 | MS.gene61466:CDS | 45.0% | |
| CCTACAGCCAACAAACTCAT+AGG | - | chr8.3:13505814-13505833 | None:intergenic | 45.0% | |
| CGTGAGCAGTTGCTTAATCA+AGG | + | chr8.3:13505472-13505491 | MS.gene61466:CDS | 45.0% | |
| CTCAGAGACACACAAGGATA+AGG | - | chr8.3:13507017-13507036 | None:intergenic | 45.0% | |
| CTTAAGGCCAGGAAGTAGTA+AGG | + | chr8.3:13506907-13506926 | MS.gene61466:CDS | 45.0% | |
| GAAGAGCTACTGGTAAATGC+AGG | + | chr8.3:13506024-13506043 | MS.gene61466:CDS | 45.0% | |
| GTCAGAGCCCTGTATAATTG+GGG | + | chr8.3:13506087-13506106 | MS.gene61466:CDS | 45.0% | |
| GTGGAAGTGGAAGTAGTTTG+AGG | + | chr8.3:13504663-13504682 | MS.gene61466:CDS | 45.0% | |
| GTTAAGCTCAGAGACACACA+AGG | - | chr8.3:13507023-13507042 | None:intergenic | 45.0% | |
| GTTACCGGAACAAAGGATTG+AGG | + | chr8.3:13505311-13505330 | MS.gene61466:CDS | 45.0% | |
| TACAGCAGAGATCTCGCTTA+AGG | + | chr8.3:13506891-13506910 | MS.gene61466:CDS | 45.0% | |
| TAGTGCAGAGATTGTGTGTG+CGG | - | chr8.3:13506733-13506752 | None:intergenic | 45.0% | |
| TCGCAACGAATCAAACTCAC+CGG | - | chr8.3:13504438-13504457 | None:intergenic | 45.0% | |
| TCTTCATACCGAGACCTATC+AGG | - | chr8.3:13505541-13505560 | None:intergenic | 45.0% | |
| TGCAAGGCCCCAATTATACA+GGG | - | chr8.3:13506097-13506116 | None:intergenic | 45.0% | |
| TTCGGCGAATTAAAGGTGAG+TGG | + | chr8.3:13504638-13504657 | MS.gene61466:CDS | 45.0% | |
| TTGCACAAACAATCCCCATG+AGG | - | chr8.3:13504511-13504530 | None:intergenic | 45.0% | |
| ! | AGAATCAAGCCGGCTTTCAT+GGG | - | chr8.3:13505401-13505420 | None:intergenic | 45.0% |
| ! | AGCGTAGGGTTTTTGCGAAA+CGG | + | chr8.3:13504605-13504624 | MS.gene61466:CDS | 45.0% |
| !! | AGCTTTGTTCAGATGGGGTA+TGG | + | chr8.3:13506865-13506884 | MS.gene61466:intron | 45.0% |
| !! | AGGCTTTAAGTCCACAGCTT+TGG | - | chr8.3:13505794-13505813 | None:intergenic | 45.0% |
| !! | CAATGGCGATTTCTAGGGTT+AGG | + | chr8.3:13504528-13504547 | MS.gene61466:CDS | 45.0% |
| !! | CCTATGAGTTTGTTGGCTGT+AGG | + | chr8.3:13505811-13505830 | MS.gene61466:CDS | 45.0% |
| AAAGGAACAGTGGGCCTGAT+AGG | + | chr8.3:13505524-13505543 | MS.gene61466:CDS | 50.0% | |
| AAGGTGAGTGGAAGTGGAAG+TGG | + | chr8.3:13504650-13504669 | MS.gene61466:CDS | 50.0% | |
| AGTATGTAATCTGCTGGGGC+GGG | - | chr8.3:13506229-13506248 | None:intergenic | 50.0% | |
| CAGCAGTGTGACAGACATGT+GGG | + | chr8.3:13505372-13505391 | MS.gene61466:CDS | 50.0% | |
| CAGTATGTAATCTGCTGGGG+CGG | - | chr8.3:13506230-13506249 | None:intergenic | 50.0% | |
| GCAGTTGCTTAATCAAGGCC+AGG | + | chr8.3:13505477-13505496 | MS.gene61466:CDS | 50.0% | |
| GCGAAAACCATAGCAGAAGC+TGG | - | chr8.3:13504575-13504594 | None:intergenic | 50.0% | |
| GTGCAAGGCCCCAATTATAC+AGG | - | chr8.3:13506098-13506117 | None:intergenic | 50.0% | |
| TGTGGGAATCCCATGAAAGC+CGG | + | chr8.3:13505389-13505408 | MS.gene61466:CDS | 50.0% | |
| ! | CAGAATCAAGCCGGCTTTCA+TGG | - | chr8.3:13505402-13505421 | None:intergenic | 50.0% |
| ! | GGGGATAATCACAGAAGTGC+TGG | + | chr8.3:13505262-13505281 | MS.gene61466:CDS | 50.0% |
| ! | TGAAGAGTGCGAAGAGCTAC+TGG | + | chr8.3:13506014-13506033 | MS.gene61466:CDS | 50.0% |
| ! | TTGTTGGCTGTAGGACAGCT+AGG | + | chr8.3:13505820-13505839 | MS.gene61466:CDS | 50.0% |
| ACAGTGGGCCTGATAGGTCT+CGG | + | chr8.3:13505530-13505549 | MS.gene61466:CDS | 55.0% | |
| AGGAAACGGTGCTTTGCCTC+CGG | + | chr8.3:13505090-13505109 | MS.gene61466:CDS | 55.0% | |
| CAGAGATCTCGCTTAAGGCC+AGG | + | chr8.3:13506896-13506915 | MS.gene61466:CDS | 55.0% | |
| CCACATGTCTGTCACACTGC+TGG | - | chr8.3:13505374-13505393 | None:intergenic | 55.0% | |
| CCAGCAGTGTGACAGACATG+TGG | + | chr8.3:13505371-13505390 | MS.gene61466:CDS | 55.0% | |
| GGCCTTGCACTTTCTTTCCG+CGG | + | chr8.3:13506108-13506127 | MS.gene61466:CDS | 55.0% | |
| ! | GACCGCGGAAAGAAAGTGCA+AGG | - | chr8.3:13506113-13506132 | None:intergenic | 55.0% |
| ATGTAATCTGCTGGGGCGGG+AGG | - | chr8.3:13506226-13506245 | None:intergenic | 60.0% | |
| CTCACCGGAAGCTTCTGAGC+TGG | - | chr8.3:13504423-13504442 | None:intergenic | 60.0% | |
| CTCGCCAGCTCAGAAGCTTC+CGG | + | chr8.3:13504416-13504435 | MS.gene61466:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 13504227 | 13507057 | 13504227 | ID=MS.gene61466 |
| chr8.3 | mRNA | 13504227 | 13507057 | 13504227 | ID=MS.gene61466.t1;Parent=MS.gene61466 |
| chr8.3 | exon | 13504227 | 13506155 | 13504227 | ID=MS.gene61466.t1.exon1;Parent=MS.gene61466.t1 |
| chr8.3 | CDS | 13504227 | 13506155 | 13504227 | ID=cds.MS.gene61466.t1;Parent=MS.gene61466.t1 |
| chr8.3 | exon | 13506421 | 13506511 | 13506421 | ID=MS.gene61466.t1.exon2;Parent=MS.gene61466.t1 |
| chr8.3 | CDS | 13506421 | 13506511 | 13506421 | ID=cds.MS.gene61466.t1;Parent=MS.gene61466.t1 |
| chr8.3 | exon | 13506867 | 13507057 | 13506867 | ID=MS.gene61466.t1.exon3;Parent=MS.gene61466.t1 |
| chr8.3 | CDS | 13506867 | 13507057 | 13506867 | ID=cds.MS.gene61466.t1;Parent=MS.gene61466.t1 |
| Gene Sequence |
| Protein sequence |
