Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61572.t1 | XP_024628361.1 | 82.4 | 370 | 9 | 1 | 1 | 314 | 1 | 370 | 3.40E-160 | 574.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61572.t1 | Q08062 | 85.8 | 267 | 38 | 0 | 48 | 314 | 65 | 331 | 2.3e-128 | 459.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61572.t1 | G7LBJ9 | 82.4 | 370 | 9 | 1 | 1 | 314 | 44 | 413 | 2.5e-160 | 574.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene61572 | 0.809106 | 2.23E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene61572 | 0.801774 | 7.68E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene61572 | 0.80841 | 3.14E-50 | -1.69E-46 |
| MS.gene053581 | MS.gene61572 | 0.845761 | 3.32E-59 | -1.69E-46 |
| MS.gene055144 | MS.gene61572 | 0.804061 | 2.59E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene61572 | 0.816929 | 4.29E-52 | -1.69E-46 |
| MS.gene055468 | MS.gene61572 | 0.811497 | 6.80E-51 | -1.69E-46 |
| MS.gene055537 | MS.gene61572 | 0.800325 | 1.52E-48 | -1.69E-46 |
| MS.gene058339 | MS.gene61572 | 0.844954 | 5.49E-59 | -1.69E-46 |
| MS.gene058351 | MS.gene61572 | 0.804191 | 2.43E-49 | -1.69E-46 |
| MS.gene058909 | MS.gene61572 | 0.832018 | 1.20E-55 | -1.69E-46 |
| MS.gene058912 | MS.gene61572 | 0.82897 | 6.68E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61572.t1 | MTR_8g005980 | 81.081 | 370 | 14 | 2 | 1 | 314 | 44 | 413 | 0.0 | 592 |
| MS.gene61572.t1 | MTR_1g043040 | 85.019 | 267 | 40 | 0 | 48 | 314 | 65 | 331 | 6.70e-162 | 454 |
| MS.gene61572.t1 | MTR_1g076130 | 83.895 | 267 | 43 | 0 | 48 | 314 | 65 | 331 | 1.80e-159 | 448 |
| MS.gene61572.t1 | MTR_1g090730 | 40.076 | 262 | 151 | 4 | 48 | 307 | 154 | 411 | 2.63e-57 | 191 |
| MS.gene61572.t1 | MTR_1g090730 | 41.827 | 208 | 117 | 2 | 48 | 255 | 154 | 357 | 2.62e-45 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61572.t1 | AT5G43330 | 82.772 | 267 | 46 | 0 | 48 | 314 | 65 | 331 | 2.09e-157 | 443 |
| MS.gene61572.t1 | AT1G04410 | 81.648 | 267 | 49 | 0 | 48 | 314 | 65 | 331 | 3.92e-156 | 440 |
| MS.gene61572.t1 | AT5G56720 | 76.779 | 267 | 62 | 0 | 48 | 314 | 104 | 370 | 7.08e-150 | 426 |
| MS.gene61572.t1 | AT5G58330 | 43.701 | 254 | 137 | 4 | 56 | 307 | 58 | 307 | 2.62e-64 | 206 |
| MS.gene61572.t1 | AT5G58330 | 43.701 | 254 | 137 | 4 | 56 | 307 | 166 | 415 | 2.62e-63 | 207 |
| MS.gene61572.t1 | AT5G58330 | 43.701 | 254 | 137 | 4 | 56 | 307 | 167 | 416 | 2.99e-63 | 206 |
Find 63 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATTCGTGATTGGGTTCT+AGG | 0.208668 | 8.2:-83854132 | MS.gene61572:CDS |
| ATTAGAGCATTTGTATTTGC+TGG | 0.287739 | 8.2:+83854640 | None:intergenic |
| AATTAGTTGCTGATGATAAT+TGG | 0.294423 | 8.2:-83854402 | MS.gene61572:intron |
| CAGCTTCCTTGCTTTGATAA+TGG | 0.303489 | 8.2:+83854191 | None:intergenic |
| CATTTAGCTTCTCAGAGATT+TGG | 0.316171 | 8.2:+83854539 | None:intergenic |
| GGATGTTAACATTGCTGTTA+TGG | 0.320450 | 8.2:-83855054 | MS.gene61572:CDS |
| GTGTATTCTGATGGATCTTA+TGG | 0.333768 | 8.2:-83853996 | MS.gene61572:CDS |
| TCTCCTTTGTCACATGTAAC+AGG | 0.337906 | 8.2:+83853945 | None:intergenic |
| CTTGCGATCATATTCGTGAT+TGG | 0.341095 | 8.2:-83854140 | MS.gene61572:CDS |
| CTTGATCATAATAGAGCATT+AGG | 0.352322 | 8.2:-83854562 | MS.gene61572:CDS |
| CTAATTCTCTGACATGCTTC+TGG | 0.371163 | 8.2:+83854419 | None:intergenic |
| CAAGGCTCAAGCTTCAGCTT+TGG | 0.381754 | 8.2:-83854964 | MS.gene61572:CDS |
| AGCATTTGTATTTGCTGGAT+TGG | 0.420149 | 8.2:+83854645 | None:intergenic |
| TTGCGATCATATTCGTGATT+GGG | 0.420157 | 8.2:-83854139 | MS.gene61572:CDS |
| GGCTCAAGCTTCAGCTTTGG+AGG | 0.422591 | 8.2:-83854961 | MS.gene61572:CDS |
| AACATTGCTGTTATGGTTGG+TGG | 0.430741 | 8.2:-83855047 | MS.gene61572:CDS |
| CTTTCCATTCCTTCCTTCCG+TGG | 0.437314 | 8.2:+83855020 | None:intergenic |
| AATGTTTGGTCTGGATATTA+TGG | 0.440068 | 8.2:-83855866 | MS.gene61572:CDS |
| AGAGTGAACATGGCAATGTT+TGG | 0.452120 | 8.2:-83855880 | None:intergenic |
| TCAGGGAACATGGGTATCAA+TGG | 0.455290 | 8.2:-83854021 | MS.gene61572:intron |
| TTGATCTATTTCAGGGAACA+TGG | 0.477408 | 8.2:-83854031 | MS.gene61572:intron |
| TATAGGTGTTGTTGCTACTA+CGG | 0.487099 | 8.2:-83855096 | MS.gene61572:intron |
| GAACATGGCAATGTTTGGTC+TGG | 0.488576 | 8.2:-83855875 | None:intergenic |
| GTTAACATTGCTGTTATGGT+TGG | 0.495278 | 8.2:-83855050 | MS.gene61572:CDS |
| TGAATTCTCAAGGGAAAAGA+TGG | 0.497373 | 8.2:-83853780 | MS.gene61572:CDS |
| TAAGAATGTTTCAATTTACA+AGG | 0.500824 | 8.2:-83854982 | MS.gene61572:CDS |
| GAAAGAACCGGTCACCGTAT+TGG | 0.503989 | 8.2:-83855749 | MS.gene61572:CDS |
| TTTCCATTCCTTCCTTCCGT+GGG | 0.509336 | 8.2:+83855021 | None:intergenic |
| CAGGGAACATGGGTATCAAT+GGG | 0.511230 | 8.2:-83854020 | MS.gene61572:CDS |
| ACGGTTGCATGGTTGACGTC+TGG | 0.512596 | 8.2:+83854457 | None:intergenic |
| TCTCAAAGTTGAGAAAGAAC+CGG | 0.521257 | 8.2:-83855761 | MS.gene61572:CDS |
| TCACAACTGTTCAGCAGCGT+GGG | 0.522667 | 8.2:-83854218 | MS.gene61572:CDS |
| TACTTGTTGCCACGGTTGCA+TGG | 0.531832 | 8.2:+83854446 | None:intergenic |
| CCGGTCACCGTATTGGTCAC+TGG | 0.538505 | 8.2:-83855742 | MS.gene61572:intron |
| CTGGCCATTACTTGTTGCCA+CGG | 0.542599 | 8.2:+83854438 | None:intergenic |
| GCAACCGTGGCAACAAGTAA+TGG | 0.552748 | 8.2:-83854442 | MS.gene61572:CDS |
| TTACATGTGACAAAGGAGAA+TGG | 0.562455 | 8.2:-83853941 | MS.gene61572:CDS |
| TCAAGATTGATGAATTCTCA+AGG | 0.563770 | 8.2:-83853790 | MS.gene61572:CDS |
| ATCACAACTGTTCAGCAGCG+TGG | 0.564705 | 8.2:-83854219 | MS.gene61572:CDS |
| CCAGTGACCAATACGGTGAC+CGG | 0.566136 | 8.2:+83855742 | None:intergenic |
| GGTGGATTCCCACGGAAGGA+AGG | 0.567363 | 8.2:-83855029 | MS.gene61572:CDS |
| GGATCTTATGGTATCCAACC+TGG | 0.573108 | 8.2:-83853984 | MS.gene61572:CDS |
| TCTGGATATTATGGACCAAA+CGG | 0.580521 | 8.2:-83855857 | MS.gene61572:CDS |
| TTGGGTTCTAGGTACACCTA+AGG | 0.583834 | 8.2:-83854121 | MS.gene61572:intron |
| TTATGGTTGGTGGATTCCCA+CGG | 0.584515 | 8.2:-83855037 | MS.gene61572:CDS |
| TGATCTATTTCAGGGAACAT+GGG | 0.587962 | 8.2:-83854030 | MS.gene61572:intron |
| CACAACTGTTCAGCAGCGTG+GGG | 0.588509 | 8.2:-83854217 | MS.gene61572:CDS |
| TCAATGGGAGTGTATTCTGA+TGG | 0.591080 | 8.2:-83854005 | MS.gene61572:CDS |
| AAGAGTAAATGAGACCAGGT+TGG | 0.593344 | 8.2:+83853970 | None:intergenic |
| TTTCCTGTTACATGTGACAA+AGG | 0.594930 | 8.2:-83853948 | MS.gene61572:CDS |
| ATTCCCACGGAAGGAAGGAA+TGG | 0.604648 | 8.2:-83855024 | MS.gene61572:CDS |
| TGCAGCACCAGTGACCAATA+CGG | 0.612142 | 8.2:+83855735 | None:intergenic |
| GGATGTTGTTGAAGCTTGCA+AGG | 0.620315 | 8.2:-83855075 | MS.gene61572:CDS |
| GCTCATTGAGGAGAAAACAT+TGG | 0.620815 | 8.2:-83853741 | MS.gene61572:CDS |
| CAAGATTGATGAATTCTCAA+GGG | 0.626012 | 8.2:-83853789 | MS.gene61572:CDS |
| GGAGAATGGAACATTGTACA+AGG | 0.636027 | 8.2:-83853927 | MS.gene61572:intron |
| GGTTGGTGGATTCCCACGGA+AGG | 0.640456 | 8.2:-83855033 | MS.gene61572:CDS |
| AACAGCTCAAGAGCTCATTG+AGG | 0.646195 | 8.2:-83853753 | MS.gene61572:CDS |
| GGAAAAGAGTAAATGAGACC+AGG | 0.651573 | 8.2:+83853966 | None:intergenic |
| GGGGTGCCATTATCAAAGCA+AGG | 0.653347 | 8.2:-83854197 | MS.gene61572:CDS |
| GACGTCTGGATATTGAGTTG+AGG | 0.679778 | 8.2:+83854471 | None:intergenic |
| AGACGTCAACCATGCAACCG+TGG | 0.680021 | 8.2:-83854455 | MS.gene61572:CDS |
| ACAACTGTTCAGCAGCGTGG+GGG | 0.720838 | 8.2:-83854216 | MS.gene61572:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATCAAATCAAAATTAAA+AGG | + | chr8.2:83854204-83854223 | None:intergenic | 10.0% |
| !!! | TTTACTATATTGATTTTTAT+TGG | + | chr8.2:83854087-83854106 | None:intergenic | 10.0% |
| !! | TGCATATAAAAATGTAATAT+AGG | - | chr8.2:83854482-83854501 | MS.gene61572:CDS | 15.0% |
| !! | ACATAAATTTAAAAATCCAC+AGG | - | chr8.2:83853986-83854005 | MS.gene61572:CDS | 20.0% |
| !! | ATGTGAAAAATGTTATCATT+TGG | - | chr8.2:83855091-83855110 | MS.gene61572:CDS | 20.0% |
| !! | ATTTACTTTGATCTATTTCA+GGG | - | chr8.2:83855557-83855576 | MS.gene61572:intron | 20.0% |
| !! | CATAAATTTAAAAATCCACA+GGG | - | chr8.2:83853987-83854006 | MS.gene61572:CDS | 20.0% |
| !! | TAAGAATGTTTCAATTTACA+AGG | - | chr8.2:83854613-83854632 | MS.gene61572:CDS | 20.0% |
| !! | TATGTTATGATAATTTGACA+GGG | - | chr8.2:83855781-83855800 | MS.gene61572:CDS | 20.0% |
| !! | TATTTACTTTGATCTATTTC+AGG | - | chr8.2:83855556-83855575 | MS.gene61572:intron | 20.0% |
| !! | TGTGAAAAATGTTATCATTT+GGG | - | chr8.2:83855092-83855111 | MS.gene61572:CDS | 20.0% |
| !! | TTATGTTATGATAATTTGAC+AGG | - | chr8.2:83855780-83855799 | MS.gene61572:CDS | 20.0% |
| !!! | AAACAAGAACAATTTTTTGA+AGG | + | chr8.2:83853765-83853784 | None:intergenic | 20.0% |
| !!! | AGACATGTTATATTTTTATC+AGG | + | chr8.2:83855006-83855025 | None:intergenic | 20.0% |
| !!! | GACATGTTATATTTTTATCA+GGG | + | chr8.2:83855005-83855024 | None:intergenic | 20.0% |
| !!! | GTATATATTTTTCTTGTGTT+AGG | - | chr8.2:83855338-83855357 | MS.gene61572:intron | 20.0% |
| !!! | TTTTGATTTGATTAAAACAC+AGG | - | chr8.2:83854209-83854228 | MS.gene61572:CDS | 20.0% |
| ! | AAAATCAGTTAGGTTTGAAA+AGG | - | chr8.2:83854727-83854746 | MS.gene61572:intron | 25.0% |
| ! | AACCTAACTATACTATAAAG+AGG | + | chr8.2:83854702-83854721 | None:intergenic | 25.0% |
| ! | AAGACTGAACTGTTAATTAA+TGG | + | chr8.2:83854833-83854852 | None:intergenic | 25.0% |
| ! | AATTAAGAAAAACGAACCTT+AGG | + | chr8.2:83855493-83855512 | None:intergenic | 25.0% |
| ! | AATTAGTTGCTGATGATAAT+TGG | - | chr8.2:83855193-83855212 | MS.gene61572:intron | 25.0% |
| ! | ACCTAACTATACTATAAAGA+GGG | + | chr8.2:83854701-83854720 | None:intergenic | 25.0% |
| ! | AGGTTCATAAAAAATCAGTT+AGG | - | chr8.2:83854717-83854736 | MS.gene61572:intron | 25.0% |
| ! | ATTCATAAAGAAAACCATGA+TGG | + | chr8.2:83854440-83854459 | None:intergenic | 25.0% |
| ! | CAATTAATCATATTCCATCA+TGG | - | chr8.2:83854423-83854442 | MS.gene61572:CDS | 25.0% |
| ! | CCAAAACTTTATACCAATTT+GGG | - | chr8.2:83854797-83854816 | MS.gene61572:intron | 25.0% |
| ! | GTGAAAAATGTTATCATTTG+GGG | - | chr8.2:83855093-83855112 | MS.gene61572:CDS | 25.0% |
| !! | TGTGTTCTTAGTTGAAATTT+TGG | - | chr8.2:83853900-83853919 | MS.gene61572:intron | 25.0% |
| !!! | ATATTTTTATCAGGGATTGA+TGG | + | chr8.2:83854997-83855016 | None:intergenic | 25.0% |
| !!! | GCTTTATTTGCAATGTAATA+TGG | + | chr8.2:83853955-83853974 | None:intergenic | 25.0% |
| !!! | TAGTTTGCACTTTTTTGTTT+TGG | - | chr8.2:83853785-83853804 | MS.gene61572:CDS | 25.0% |
| !!! | TTGAAATTTTGGTTAACCTT+AGG | - | chr8.2:83853911-83853930 | MS.gene61572:intron | 25.0% |
| AATAAAGCACAAAGCATAAG+TGG | + | chr8.2:83855540-83855559 | None:intergenic | 30.0% | |
| AATGTTTGGTCTGGATATTA+TGG | - | chr8.2:83853729-83853748 | MS.gene61572:CDS | 30.0% | |
| ACCCTCTTTATAGTATAGTT+AGG | - | chr8.2:83854697-83854716 | MS.gene61572:intron | 30.0% | |
| ATCAAGATTAGGATTGTTCA+TGG | + | chr8.2:83854889-83854908 | None:intergenic | 30.0% | |
| CAAAAATATGTGACTTCCTA+AGG | + | chr8.2:83853930-83853949 | None:intergenic | 30.0% | |
| CAAGATTGATGAATTCTCAA+GGG | - | chr8.2:83855806-83855825 | MS.gene61572:CDS | 30.0% | |
| GAAAGGAAATTATAACTACC+TGG | + | chr8.2:83854857-83854876 | None:intergenic | 30.0% | |
| GATTAAAACACAGGACAAAT+TGG | - | chr8.2:83854218-83854237 | MS.gene61572:CDS | 30.0% | |
| GCCAAAACTTTATACCAATT+TGG | - | chr8.2:83854796-83854815 | MS.gene61572:intron | 30.0% | |
| TCAAGATTGATGAATTCTCA+AGG | - | chr8.2:83855805-83855824 | MS.gene61572:CDS | 30.0% | |
| TCAAGCATATGCAAAATTAC+AGG | + | chr8.2:83854296-83854315 | None:intergenic | 30.0% | |
| TGGAAGATACAATCAAGATT+AGG | + | chr8.2:83854900-83854919 | None:intergenic | 30.0% | |
| ! | ATTAGAGCATTTGTATTTGC+TGG | + | chr8.2:83854958-83854977 | None:intergenic | 30.0% |
| ! | CATAACTGATTTCTTCATCA+AGG | + | chr8.2:83855765-83855784 | None:intergenic | 30.0% |
| ! | CCCAAATTGGTATAAAGTTT+TGG | + | chr8.2:83854800-83854819 | None:intergenic | 30.0% |
| ! | CTTGATCATAATAGAGCATT+AGG | - | chr8.2:83855033-83855052 | MS.gene61572:CDS | 30.0% |
| ! | GTTCATGGTTTGATTTAGAA+AGG | + | chr8.2:83854874-83854893 | None:intergenic | 30.0% |
| !! | GCAAAATTACAGGTTGATTT+GGG | + | chr8.2:83854286-83854305 | None:intergenic | 30.0% |
| !! | TGCAAAATTACAGGTTGATT+TGG | + | chr8.2:83854287-83854306 | None:intergenic | 30.0% |
| !! | TTCCAATTATTTCTGAATGC+AGG | - | chr8.2:83854915-83854934 | MS.gene61572:intron | 30.0% |
| !! | TTCCTAGTTCTAGCAAATAA+CGG | - | chr8.2:83855719-83855738 | MS.gene61572:intron | 30.0% |
| ACACTTAATTTCCTAGCTAG+TGG | + | chr8.2:83855320-83855339 | None:intergenic | 35.0% | |
| ACCTTTACAGAAAACCATGA+TGG | + | chr8.2:83854755-83854774 | None:intergenic | 35.0% | |
| ATTAACAGTTCAGTCTTACC+AGG | - | chr8.2:83854836-83854855 | MS.gene61572:intron | 35.0% | |
| CAAAGATAGTCAGATTGAGA+AGG | + | chr8.2:83855234-83855253 | None:intergenic | 35.0% | |
| CACCTGCATTCAGAAATAAT+TGG | + | chr8.2:83854920-83854939 | None:intergenic | 35.0% | |
| TCTCAAAGTTGAGAAAGAAC+CGG | - | chr8.2:83853834-83853853 | MS.gene61572:intron | 35.0% | |
| TCTGGATATTATGGACCAAA+CGG | - | chr8.2:83853738-83853757 | MS.gene61572:CDS | 35.0% | |
| TGAATTCTCAAGGGAAAAGA+TGG | - | chr8.2:83855815-83855834 | MS.gene61572:CDS | 35.0% | |
| TGATATTGAACCAGCATTAG+AGG | - | chr8.2:83854313-83854332 | MS.gene61572:intron | 35.0% | |
| TGATCTATTTCAGGGAACAT+GGG | - | chr8.2:83855565-83855584 | MS.gene61572:intron | 35.0% | |
| TTACATGTGACAAAGGAGAA+TGG | - | chr8.2:83855654-83855673 | MS.gene61572:intron | 35.0% | |
| TTGATCTATTTCAGGGAACA+TGG | - | chr8.2:83855564-83855583 | MS.gene61572:intron | 35.0% | |
| TTGCGATCATATTCGTGATT+GGG | - | chr8.2:83855456-83855475 | MS.gene61572:intron | 35.0% | |
| TTGTTCCAATGATAGCAAGA+GGG | - | chr8.2:83854249-83854268 | MS.gene61572:intron | 35.0% | |
| TTTCCTGTTACATGTGACAA+AGG | - | chr8.2:83855647-83855666 | MS.gene61572:intron | 35.0% | |
| ! | AAAAACATGCCTCTAAGAAG+TGG | + | chr8.2:83854380-83854399 | None:intergenic | 35.0% |
| ! | AAAACATGCCTCTAAGAAGT+GGG | + | chr8.2:83854379-83854398 | None:intergenic | 35.0% |
| ! | ACCATCATGGTTTTCTGTAA+AGG | - | chr8.2:83854751-83854770 | MS.gene61572:intron | 35.0% |
| ! | AGCATTTGTATTTGCTGGAT+TGG | + | chr8.2:83854953-83854972 | None:intergenic | 35.0% |
| ! | ATTGAGAAGGTTTGAAACTG+AGG | + | chr8.2:83855221-83855240 | None:intergenic | 35.0% |
| ! | CATTTAGCTTCTCAGAGATT+TGG | + | chr8.2:83855059-83855078 | None:intergenic | 35.0% |
| ! | GGATGTTAACATTGCTGTTA+TGG | - | chr8.2:83854541-83854560 | MS.gene61572:CDS | 35.0% |
| ! | GTGTATTCTGATGGATCTTA+TGG | - | chr8.2:83855599-83855618 | MS.gene61572:intron | 35.0% |
| ! | GTTAACATTGCTGTTATGGT+TGG | - | chr8.2:83854545-83854564 | MS.gene61572:CDS | 35.0% |
| ! | TGCATGGAATATTTAGAGCA+TGG | + | chr8.2:83855279-83855298 | None:intergenic | 35.0% |
| ! | TGGAATATTTAGAGCATGGA+TGG | + | chr8.2:83855275-83855294 | None:intergenic | 35.0% |
| !! | TATAGGTGTTGTTGCTACTA+CGG | - | chr8.2:83854499-83854518 | MS.gene61572:CDS | 35.0% |
| !!! | CAATTTTTTGAAGGACCGTT+TGG | + | chr8.2:83853756-83853775 | None:intergenic | 35.0% |
| AAGAGTAAATGAGACCAGGT+TGG | + | chr8.2:83855628-83855647 | None:intergenic | 40.0% | |
| ATAGCAAGAGGGATGATGTT+AGG | - | chr8.2:83854260-83854279 | MS.gene61572:intron | 40.0% | |
| CAGCTTCCTTGCTTTGATAA+TGG | + | chr8.2:83855407-83855426 | None:intergenic | 40.0% | |
| CATATTCGTGATTGGGTTCT+AGG | - | chr8.2:83855463-83855482 | MS.gene61572:intron | 40.0% | |
| CGACATGTGATGAATCTCAA+TGG | + | chr8.2:83854049-83854068 | None:intergenic | 40.0% | |
| CTAATTCTCTGACATGCTTC+TGG | + | chr8.2:83855179-83855198 | None:intergenic | 40.0% | |
| CTTGCGATCATATTCGTGAT+TGG | - | chr8.2:83855455-83855474 | MS.gene61572:intron | 40.0% | |
| CTTGTTCCAATGATAGCAAG+AGG | - | chr8.2:83854248-83854267 | MS.gene61572:intron | 40.0% | |
| GCTCATTGAGGAGAAAACAT+TGG | - | chr8.2:83855854-83855873 | MS.gene61572:CDS | 40.0% | |
| GGAAAAGAGTAAATGAGACC+AGG | + | chr8.2:83855632-83855651 | None:intergenic | 40.0% | |
| GGAGAATGGAACATTGTACA+AGG | - | chr8.2:83855668-83855687 | MS.gene61572:intron | 40.0% | |
| TCTCCTTTGTCACATGTAAC+AGG | + | chr8.2:83855653-83855672 | None:intergenic | 40.0% | |
| TGATGAATCTCAATGGATCG+TGG | + | chr8.2:83854042-83854061 | None:intergenic | 40.0% | |
| ! | AACATTGCTGTTATGGTTGG+TGG | - | chr8.2:83854548-83854567 | MS.gene61572:CDS | 40.0% |
| ! | ATCATCCCTCTTGCTATCAT+TGG | + | chr8.2:83854257-83854276 | None:intergenic | 40.0% |
| ! | GACCGTTATTTGCTAGAACT+AGG | + | chr8.2:83855724-83855743 | None:intergenic | 40.0% |
| ! | TCAATGGGAGTGTATTCTGA+TGG | - | chr8.2:83855590-83855609 | MS.gene61572:intron | 40.0% |
| !! | AGCATTAGAGGCACTTAAAG+GGG | - | chr8.2:83854325-83854344 | MS.gene61572:intron | 40.0% |
| !! | CAGCATTAGAGGCACTTAAA+GGG | - | chr8.2:83854324-83854343 | MS.gene61572:intron | 40.0% |
| AACAGCTCAAGAGCTCATTG+AGG | - | chr8.2:83855842-83855861 | MS.gene61572:CDS | 45.0% | |
| AGCAATCTCTTCCACTAGCT+AGG | - | chr8.2:83855306-83855325 | MS.gene61572:intron | 45.0% | |
| CAGGGAACATGGGTATCAAT+GGG | - | chr8.2:83855575-83855594 | MS.gene61572:intron | 45.0% | |
| CCTTTAAGTGCCTCTAATGC+TGG | + | chr8.2:83854326-83854345 | None:intergenic | 45.0% | |
| GAGATTGCTTTGCATGTGCA+TGG | + | chr8.2:83855295-83855314 | None:intergenic | 45.0% | |
| GGATCTTATGGTATCCAACC+TGG | - | chr8.2:83855611-83855630 | MS.gene61572:intron | 45.0% | |
| GGATGTTGTTGAAGCTTGCA+AGG | - | chr8.2:83854520-83854539 | MS.gene61572:CDS | 45.0% | |
| GTAAATTGCAAGTGGCGAAG+TGG | - | chr8.2:83854009-83854028 | MS.gene61572:CDS | 45.0% | |
| TCAGGGAACATGGGTATCAA+TGG | - | chr8.2:83855574-83855593 | MS.gene61572:intron | 45.0% | |
| TCCACAGGGTAAATTGCAAG+TGG | - | chr8.2:83854001-83854020 | MS.gene61572:CDS | 45.0% | |
| TTTCCATTCCTTCCTTCCGT+GGG | + | chr8.2:83854577-83854596 | None:intergenic | 45.0% | |
| ! | GACGTCTGGATATTGAGTTG+AGG | + | chr8.2:83855127-83855146 | None:intergenic | 45.0% |
| !! | CCAGCATTAGAGGCACTTAA+AGG | - | chr8.2:83854323-83854342 | MS.gene61572:intron | 45.0% |
| !! | GGTTTGAAAAGGCACCATCA+TGG | - | chr8.2:83854738-83854757 | MS.gene61572:intron | 45.0% |
| !! | TTATGGTTGGTGGATTCCCA+CGG | - | chr8.2:83854558-83854577 | MS.gene61572:CDS | 45.0% |
| !! | TTGGGTTCTAGGTACACCTA+AGG | - | chr8.2:83855474-83855493 | MS.gene61572:intron | 45.0% |
| ATCACAACTGTTCAGCAGCG+TGG | - | chr8.2:83855376-83855395 | MS.gene61572:intron | 50.0% | |
| ATTCCCACGGAAGGAAGGAA+TGG | - | chr8.2:83854571-83854590 | MS.gene61572:CDS | 50.0% | |
| CAAGGCTCAAGCTTCAGCTT+TGG | - | chr8.2:83854631-83854650 | MS.gene61572:CDS | 50.0% | |
| CTTTCCATTCCTTCCTTCCG+TGG | + | chr8.2:83854578-83854597 | None:intergenic | 50.0% | |
| GAAAGAACCGGTCACCGTAT+TGG | - | chr8.2:83853846-83853865 | MS.gene61572:intron | 50.0% | |
| GCAACCGTGGCAACAAGTAA+TGG | - | chr8.2:83855153-83855172 | MS.gene61572:intron | 50.0% | |
| GCCACTTGCAATTTACCCTG+TGG | + | chr8.2:83854005-83854024 | None:intergenic | 50.0% | |
| GGCACTTAAAGGGGTGAAGA+TGG | - | chr8.2:83854334-83854353 | MS.gene61572:intron | 50.0% | |
| TCACAACTGTTCAGCAGCGT+GGG | - | chr8.2:83855377-83855396 | MS.gene61572:intron | 50.0% | |
| TGCAGCACCAGTGACCAATA+CGG | + | chr8.2:83853863-83853882 | None:intergenic | 50.0% | |
| TGGTTCGTCTCGACCCAAAT+TGG | + | chr8.2:83854813-83854832 | None:intergenic | 50.0% | |
| ! | CTGGCCATTACTTGTTGCCA+CGG | + | chr8.2:83855160-83855179 | None:intergenic | 50.0% |
| ! | GCTGCTTTCCCACTTCTTAG+AGG | - | chr8.2:83854368-83854387 | MS.gene61572:intron | 50.0% |
| ! | TACTTGTTGCCACGGTTGCA+TGG | + | chr8.2:83855152-83855171 | None:intergenic | 50.0% |
| !! | GGGGTGCCATTATCAAAGCA+AGG | - | chr8.2:83855398-83855417 | MS.gene61572:intron | 50.0% |
| ACAACTGTTCAGCAGCGTGG+GGG | - | chr8.2:83855379-83855398 | MS.gene61572:intron | 55.0% | |
| ACGGTTGCATGGTTGACGTC+TGG | + | chr8.2:83855141-83855160 | None:intergenic | 55.0% | |
| AGACGTCAACCATGCAACCG+TGG | - | chr8.2:83855140-83855159 | MS.gene61572:intron | 55.0% | |
| CACAACTGTTCAGCAGCGTG+GGG | - | chr8.2:83855378-83855397 | MS.gene61572:intron | 55.0% | |
| CCAGTGACCAATACGGTGAC+CGG | + | chr8.2:83853856-83853875 | None:intergenic | 55.0% | |
| ! | GGCTCAAGCTTCAGCTTTGG+AGG | - | chr8.2:83854634-83854653 | MS.gene61572:CDS | 55.0% |
| !! | GTATTGGTCACTGGTGCTGC+AGG | - | chr8.2:83853862-83853881 | MS.gene61572:intron | 55.0% |
| ! | CCGGTCACCGTATTGGTCAC+TGG | - | chr8.2:83853853-83853872 | MS.gene61572:intron | 60.0% |
| ! | GGTGGATTCCCACGGAAGGA+AGG | - | chr8.2:83854566-83854585 | MS.gene61572:CDS | 60.0% |
| !! | GGTTGGTGGATTCCCACGGA+AGG | - | chr8.2:83854562-83854581 | MS.gene61572:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 83853724 | 83855893 | 83853724 | ID=MS.gene61572 |
| chr8.2 | mRNA | 83853724 | 83855893 | 83853724 | ID=MS.gene61572.t1;Parent=MS.gene61572 |
| chr8.2 | exon | 83855743 | 83855893 | 83855743 | ID=MS.gene61572.t1.exon1;Parent=MS.gene61572.t1 |
| chr8.2 | CDS | 83855743 | 83855893 | 83855743 | ID=cds.MS.gene61572.t1;Parent=MS.gene61572.t1 |
| chr8.2 | exon | 83854938 | 83855113 | 83854938 | ID=MS.gene61572.t1.exon2;Parent=MS.gene61572.t1 |
| chr8.2 | CDS | 83854938 | 83855113 | 83854938 | ID=cds.MS.gene61572.t1;Parent=MS.gene61572.t1 |
| chr8.2 | exon | 83854403 | 83854680 | 83854403 | ID=MS.gene61572.t1.exon3;Parent=MS.gene61572.t1 |
| chr8.2 | CDS | 83854403 | 83854680 | 83854403 | ID=cds.MS.gene61572.t1;Parent=MS.gene61572.t1 |
| chr8.2 | exon | 83854122 | 83854257 | 83854122 | ID=MS.gene61572.t1.exon4;Parent=MS.gene61572.t1 |
| chr8.2 | CDS | 83854122 | 83854257 | 83854122 | ID=cds.MS.gene61572.t1;Parent=MS.gene61572.t1 |
| chr8.2 | exon | 83853928 | 83854039 | 83853928 | ID=MS.gene61572.t1.exon5;Parent=MS.gene61572.t1 |
| chr8.2 | CDS | 83853928 | 83854039 | 83853928 | ID=cds.MS.gene61572.t1;Parent=MS.gene61572.t1 |
| chr8.2 | exon | 83853724 | 83853815 | 83853724 | ID=MS.gene61572.t1.exon6;Parent=MS.gene61572.t1 |
| chr8.2 | CDS | 83853724 | 83853815 | 83853724 | ID=cds.MS.gene61572.t1;Parent=MS.gene61572.t1 |
| Gene Sequence |
| Protein sequence |
