Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61680.t1 | AES58965.2 | 97.2 | 647 | 18 | 0 | 1 | 647 | 1 | 647 | 0.00E+00 | 1259.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61680.t1 | Q9SUU1 | 65.5 | 666 | 201 | 4 | 3 | 647 | 7 | 664 | 6.7e-255 | 881.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61680.t1 | G7I6E0 | 97.2 | 647 | 18 | 0 | 1 | 647 | 1 | 647 | 0.0e+00 | 1259.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene37317 | MS.gene61680 | PPI |
| MS.gene86346 | MS.gene61680 | PPI |
| MS.gene61680 | MS.gene89068 | PPI |
| MS.gene034033 | MS.gene61680 | PPI |
| MS.gene026799 | MS.gene61680 | PPI |
| MS.gene79489 | MS.gene61680 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61680.t1 | MTR_1g011840 | 97.218 | 647 | 18 | 0 | 1 | 647 | 1 | 647 | 0.0 | 1305 |
| MS.gene61680.t1 | MTR_3g107730 | 74.704 | 676 | 155 | 3 | 2 | 662 | 3 | 677 | 0.0 | 1028 |
| MS.gene61680.t1 | MTR_0459s0020 | 66.410 | 649 | 204 | 5 | 3 | 642 | 15 | 658 | 0.0 | 877 |
| MS.gene61680.t1 | MTR_3g107730 | 78.474 | 511 | 110 | 0 | 2 | 512 | 3 | 513 | 0.0 | 848 |
| MS.gene61680.t1 | MTR_0366s0020 | 59.253 | 643 | 176 | 4 | 3 | 642 | 15 | 574 | 0.0 | 748 |
| MS.gene61680.t1 | MTR_7g110000 | 55.909 | 660 | 270 | 4 | 3 | 648 | 7 | 659 | 0.0 | 728 |
| MS.gene61680.t1 | MTR_2g032690 | 54.180 | 646 | 277 | 4 | 3 | 636 | 7 | 645 | 0.0 | 711 |
| MS.gene61680.t1 | MTR_3g077670 | 55.864 | 648 | 266 | 5 | 3 | 636 | 7 | 648 | 0.0 | 702 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61680.t1 | AT1G15460 | 65.533 | 676 | 204 | 7 | 4 | 669 | 13 | 669 | 0.0 | 910 |
| MS.gene61680.t1 | AT1G15460 | 65.533 | 676 | 204 | 7 | 4 | 669 | 13 | 669 | 0.0 | 910 |
| MS.gene61680.t1 | AT5G25430 | 66.718 | 646 | 209 | 2 | 2 | 641 | 8 | 653 | 0.0 | 904 |
| MS.gene61680.t1 | AT4G32510 | 64.151 | 689 | 203 | 5 | 3 | 670 | 7 | 672 | 0.0 | 904 |
| MS.gene61680.t1 | AT4G32510 | 65.367 | 667 | 202 | 4 | 3 | 648 | 7 | 665 | 0.0 | 903 |
| MS.gene61680.t1 | AT1G74810 | 63.959 | 677 | 215 | 6 | 3 | 669 | 12 | 669 | 0.0 | 891 |
| MS.gene61680.t1 | AT1G74810 | 63.959 | 677 | 215 | 6 | 3 | 669 | 12 | 669 | 0.0 | 891 |
| MS.gene61680.t1 | AT1G74810 | 63.959 | 677 | 215 | 6 | 3 | 669 | 12 | 669 | 0.0 | 891 |
| MS.gene61680.t1 | AT1G15460 | 68.760 | 605 | 179 | 3 | 4 | 598 | 13 | 617 | 0.0 | 870 |
| MS.gene61680.t1 | AT1G74810 | 64.561 | 649 | 201 | 6 | 31 | 669 | 8 | 637 | 0.0 | 862 |
| MS.gene61680.t1 | AT1G74810 | 64.561 | 649 | 201 | 6 | 31 | 669 | 8 | 637 | 0.0 | 862 |
| MS.gene61680.t1 | AT1G15460 | 64.605 | 582 | 177 | 7 | 98 | 669 | 1 | 563 | 0.0 | 771 |
| MS.gene61680.t1 | AT1G74810 | 62.887 | 582 | 187 | 6 | 98 | 669 | 1 | 563 | 0.0 | 754 |
| MS.gene61680.t1 | AT3G62270 | 56.522 | 644 | 264 | 4 | 3 | 636 | 7 | 644 | 0.0 | 739 |
| MS.gene61680.t1 | AT2G47160 | 57.453 | 644 | 257 | 4 | 3 | 636 | 7 | 643 | 0.0 | 738 |
| MS.gene61680.t1 | AT2G47160 | 55.456 | 669 | 256 | 5 | 3 | 636 | 7 | 668 | 0.0 | 729 |
| MS.gene61680.t1 | AT1G74810 | 62.569 | 545 | 175 | 6 | 135 | 669 | 1 | 526 | 0.0 | 700 |
| MS.gene61680.t1 | AT3G06450 | 52.477 | 646 | 284 | 6 | 3 | 636 | 9 | 643 | 0.0 | 697 |
| MS.gene61680.t1 | AT3G06450 | 52.477 | 646 | 284 | 6 | 3 | 636 | 9 | 643 | 0.0 | 697 |
| MS.gene61680.t1 | AT3G06450 | 52.477 | 646 | 284 | 6 | 3 | 636 | 9 | 643 | 0.0 | 697 |
| MS.gene61680.t1 | AT3G06450 | 52.477 | 646 | 284 | 6 | 3 | 636 | 9 | 643 | 0.0 | 697 |
Find 148 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTCCCAGGGAATCAATTT+TGG | 0.152632 | 1.3:-9238921 | MS.gene61680:CDS |
| GCACTTCCTGTTATTGCTTT+TGG | 0.157279 | 1.3:-9241590 | MS.gene61680:CDS |
| TTATTATGATGCAGAGTTAT+TGG | 0.204927 | 1.3:-9238184 | MS.gene61680:CDS |
| GGAATTATCCACTCAATATT+TGG | 0.211492 | 1.3:-9241248 | MS.gene61680:CDS |
| TACTTACTTGTAGTGCCTTC+TGG | 0.214656 | 1.3:+9238870 | None:intergenic |
| GGATACCTACCTCCGTTCTT+TGG | 0.245672 | 1.3:-9238972 | MS.gene61680:CDS |
| TCGAGCTTCTACTATCATTT+TGG | 0.246718 | 1.3:+9238115 | None:intergenic |
| TCTTCGGTTATTCCTCTAAA+TGG | 0.254655 | 1.3:+9241713 | None:intergenic |
| CTTTGCTCATTAACTCTAAC+AGG | 0.255009 | 1.3:+9239060 | None:intergenic |
| ACTCTTATTTGCGGCATTCT+TGG | 0.263685 | 1.3:-9239775 | MS.gene61680:CDS |
| AACAGCTTGGCACCTAATTC+TGG | 0.281576 | 1.3:+9241143 | None:intergenic |
| TACCCTTGCCATACATCTTT+GGG | 0.286144 | 1.3:-9240020 | MS.gene61680:CDS |
| CGATTATCACTAGGTTTACT+AGG | 0.288360 | 1.3:-9240842 | MS.gene61680:CDS |
| TCTGAATATGAGGAAATTAT+TGG | 0.289374 | 1.3:-9238460 | MS.gene61680:CDS |
| GTACCCTTGCCATACATCTT+TGG | 0.289747 | 1.3:-9240021 | MS.gene61680:CDS |
| GATACCTACCTCCGTTCTTT+GGG | 0.297206 | 1.3:-9238971 | MS.gene61680:CDS |
| CTTGGTCTCCCTCCAGTAAA+TGG | 0.302633 | 1.3:-9239757 | MS.gene61680:CDS |
| CTGTACTGGTGTTAGAATAT+TGG | 0.303071 | 1.3:-9241642 | MS.gene61680:CDS |
| GTCCAGTGGTAGAGAGATTC+AGG | 0.305551 | 1.3:+9240143 | None:intergenic |
| TGGATGAGATGACAACTAAT+AGG | 0.313017 | 1.3:-9238164 | MS.gene61680:CDS |
| TAGGCATCTATATGTTTAAT+AGG | 0.315242 | 1.3:+9239087 | None:intergenic |
| AGGGTTGCAGAGGAATTATT+TGG | 0.316548 | 1.3:-9240822 | MS.gene61680:CDS |
| CGAGGTGTCATCGCAGATTA+TGG | 0.318939 | 1.3:-9240269 | MS.gene61680:CDS |
| CAATGAAGACAGACATATTC+AGG | 0.324753 | 1.3:-9238067 | MS.gene61680:intron |
| CATATCCCGGTAGATTCTTC+AGG | 0.332119 | 1.3:+9237854 | None:intergenic |
| TTTGTTCCAGGGTTTGTGTT+TGG | 0.335131 | 1.3:-9240908 | MS.gene61680:intron |
| GGATGAGATGACAACTAATA+GGG | 0.335188 | 1.3:-9238163 | MS.gene61680:CDS |
| ACTTACTTGTAGTGCCTTCT+GGG | 0.339945 | 1.3:+9238871 | None:intergenic |
| TTAGCTATGGGACCATTTAG+AGG | 0.350397 | 1.3:-9241725 | None:intergenic |
| TGCTCTCCAAAAGCAATAAC+AGG | 0.357844 | 1.3:+9241584 | None:intergenic |
| CAAAGAATATGTAGAAAGTT+GGG | 0.360953 | 1.3:+9241618 | None:intergenic |
| TTCCTTCTGTTGAGCCATCT+TGG | 0.365186 | 1.3:+9239939 | None:intergenic |
| TTCCATCTGGTGTTCCTAGA+AGG | 0.366122 | 1.3:-9240190 | MS.gene61680:CDS |
| ATTAACTCTAACAGGCAAAT+AGG | 0.368905 | 1.3:+9239068 | None:intergenic |
| TAAGTAGAAGTGCAAGAAAA+TGG | 0.370034 | 1.3:-9240528 | MS.gene61680:CDS |
| GGTTGCTTTGTCCACTTCCT+TGG | 0.370070 | 1.3:-9240169 | MS.gene61680:CDS |
| AATCGTAGTAGCTTAACTTA+TGG | 0.376260 | 1.3:-9238093 | MS.gene61680:CDS |
| CACTCTTCACCACCTTCCTT+CGG | 0.378699 | 1.3:+9239355 | None:intergenic |
| GTTGCTTTGTCCACTTCCTT+GGG | 0.379269 | 1.3:-9240168 | MS.gene61680:CDS |
| GGAAGCAACTCTGAATTATA+CGG | 0.384602 | 1.3:-9239309 | MS.gene61680:CDS |
| GCGAGCCGTGTTTATAGAAA+TGG | 0.386586 | 1.3:-9239280 | MS.gene61680:CDS |
| GAGCAACTTAATAGAGAAAC+AGG | 0.387278 | 1.3:-9241566 | MS.gene61680:intron |
| AGAAAATGGCGATATTTAAC+AGG | 0.388372 | 1.3:-9240514 | MS.gene61680:intron |
| TGAGGAAGGACTCCATTTAC+TGG | 0.394428 | 1.3:+9239745 | None:intergenic |
| ACCATTAGTGGTATATTATG+TGG | 0.395408 | 1.3:+9238433 | None:intergenic |
| TAAAGAGTTGGAGACTTTGA+AGG | 0.396140 | 1.3:-9239160 | MS.gene61680:CDS |
| AGAGTTTAGCGACTCTTAGA+AGG | 0.397727 | 1.3:-9239705 | MS.gene61680:CDS |
| AAGTCTTCCTTTGAAATCTT+CGG | 0.398151 | 1.3:+9241697 | None:intergenic |
| TAGAGGAATATAAATTTCAT+TGG | 0.405736 | 1.3:-9240612 | MS.gene61680:CDS |
| CTACCACTGGACTGTAGTTA+AGG | 0.410424 | 1.3:-9240132 | MS.gene61680:intron |
| TTTCATTGGCGCTATACAAA+TGG | 0.416111 | 1.3:-9240598 | MS.gene61680:CDS |
| CTTTCCCAAAATTGATTCCC+TGG | 0.417341 | 1.3:+9238916 | None:intergenic |
| GCAAAGAATATGTAGAAAGT+TGG | 0.420315 | 1.3:+9241617 | None:intergenic |
| AGTGGACAAAGCAACCTTCT+AGG | 0.424170 | 1.3:+9240176 | None:intergenic |
| TTTCATGCAACAGGCTATAG+AGG | 0.424803 | 1.3:-9240781 | MS.gene61680:intron |
| GGATTGACACGGATACCTAT+TGG | 0.428993 | 1.3:-9238583 | MS.gene61680:CDS |
| GGCTGAAAATCCCTTGTTAG+AGG | 0.430093 | 1.3:-9240629 | MS.gene61680:CDS |
| GGAAACAATATTCCACCAAT+AGG | 0.432037 | 1.3:+9238568 | None:intergenic |
| ATTCTTTAGACTCTTATTTG+CGG | 0.433984 | 1.3:-9239784 | MS.gene61680:intron |
| TCCACATAATATACCACTAA+TGG | 0.440446 | 1.3:-9238434 | MS.gene61680:intron |
| ATTAGATGCTTCTGAATATG+AGG | 0.443445 | 1.3:-9238470 | MS.gene61680:CDS |
| ATGGCAATTGATAGTCTCCC+AGG | 0.464102 | 1.3:-9238934 | MS.gene61680:CDS |
| TAGCCGTTCCTGTCATCAAA+AGG | 0.464519 | 1.3:-9238993 | MS.gene61680:CDS |
| GTCCAACATACTACCATCAT+TGG | 0.465983 | 1.3:+9240242 | None:intergenic |
| ATGAGAAGGAAGAAAGGTAA+TGG | 0.468317 | 1.3:+9238547 | None:intergenic |
| CTAAACTCTTAGTATGCATA+GGG | 0.468592 | 1.3:+9239719 | None:intergenic |
| GGTCAACCTTTGTTGATTGT+AGG | 0.469219 | 1.3:-9241224 | MS.gene61680:CDS |
| TCGGTATCTTGAACTCACTT+AGG | 0.471906 | 1.3:+9240653 | None:intergenic |
| ATTCCAGCAGTTATGATAGC+AGG | 0.473402 | 1.3:-9239991 | MS.gene61680:CDS |
| TTGGTCTTAGGTTAAAGAGT+TGG | 0.495813 | 1.3:-9239172 | MS.gene61680:intron |
| TGGATTTGTGCAATCTGTAC+TGG | 0.499427 | 1.3:-9241656 | MS.gene61680:CDS |
| GAAGAATCTACCGGGATATG+AGG | 0.501335 | 1.3:-9237851 | None:intergenic |
| AAACCTGCTATCATAACTGC+TGG | 0.501635 | 1.3:+9239988 | None:intergenic |
| AGATGGAACTTTGCTCGGTA+TGG | 0.502937 | 1.3:+9240205 | None:intergenic |
| TTTCCCAAAATTGATTCCCT+GGG | 0.509771 | 1.3:+9238917 | None:intergenic |
| TAAGAGAGAGATTGCTTCCA+AGG | 0.511158 | 1.3:-9238519 | MS.gene61680:CDS |
| ATAAATGCCCCAAAGATGTA+TGG | 0.511521 | 1.3:+9240012 | None:intergenic |
| TGACTGCAACTGCAGGATAT+GGG | 0.516594 | 1.3:-9240048 | MS.gene61680:intron |
| AGATTATGGTGTTCCAATGA+TGG | 0.517455 | 1.3:-9240255 | MS.gene61680:CDS |
| AGAGTGCGAAGGAATGCATT+AGG | 0.517771 | 1.3:-9239338 | MS.gene61680:CDS |
| TTTAGCGACTCTTAGAAGGC+AGG | 0.520700 | 1.3:-9239701 | MS.gene61680:intron |
| AAATTTATATTCCTCTAACA+AGG | 0.528470 | 1.3:+9240618 | None:intergenic |
| GATTCAGGTTCCCAAGGAAG+TGG | 0.531361 | 1.3:+9240158 | None:intergenic |
| CTAAAAGTGATAAGGCGATA+AGG | 0.531741 | 1.3:+9239013 | None:intergenic |
| ATATCCCGGTAGATTCTTCA+GGG | 0.532773 | 1.3:+9237855 | None:intergenic |
| CTTACTTGTAGTGCCTTCTG+GGG | 0.534232 | 1.3:+9238872 | None:intergenic |
| AACCTGAATCTCTCTACCAC+TGG | 0.534784 | 1.3:-9240145 | MS.gene61680:CDS |
| ATACCGAGCAAAGTTCCATC+TGG | 0.536307 | 1.3:-9240203 | MS.gene61680:CDS |
| GTTTACCCTGAAGAATCTAC+CGG | 0.545419 | 1.3:-9237860 | MS.gene61680:CDS |
| GAAATTTACAGTTGATCCGA+AGG | 0.547190 | 1.3:-9239371 | MS.gene61680:intron |
| CAATCTGTTATGGATTGACA+CGG | 0.550652 | 1.3:-9238594 | MS.gene61680:CDS |
| AATTTATATTCCTCTAACAA+GGG | 0.556470 | 1.3:+9240619 | None:intergenic |
| TTTACAGTTGATCCGAAGGA+AGG | 0.560146 | 1.3:-9239367 | MS.gene61680:intron |
| GATTATCACTAGGTTTACTA+GGG | 0.562886 | 1.3:-9240841 | MS.gene61680:CDS |
| AGGAACGGCTAAAAGTGATA+AGG | 0.563689 | 1.3:+9239005 | None:intergenic |
| TTGACATCCACAGCTATATG+TGG | 0.566865 | 1.3:-9241269 | MS.gene61680:CDS |
| ATGCATGTTCGATTATCACT+AGG | 0.567007 | 1.3:-9240851 | MS.gene61680:CDS |
| GCTAAACTCTTAGTATGCAT+AGG | 0.567941 | 1.3:+9239718 | None:intergenic |
| TTCCAATGATGGTAGTATGT+TGG | 0.573433 | 1.3:-9240244 | MS.gene61680:CDS |
| ATAGCTATGAGAAGGAAGAA+AGG | 0.575155 | 1.3:+9238541 | None:intergenic |
| TAGTTTGCATCGAATAACCT+TGG | 0.577666 | 1.3:+9238502 | None:intergenic |
| TTCCAAGATGGCTCAACAGA+AGG | 0.577993 | 1.3:-9239941 | MS.gene61680:CDS |
| ACACCAGATGGAACTTTGCT+CGG | 0.580094 | 1.3:+9240200 | None:intergenic |
| TATGCATAGGGGACTGAGGA+AGG | 0.581537 | 1.3:+9239731 | None:intergenic |
| TGCCCCAAAGATGTATGGCA+AGG | 0.582072 | 1.3:+9240017 | None:intergenic |
| ACATCATAGTGGTAAGCAGA+TGG | 0.586567 | 1.3:+9239901 | None:intergenic |
| GAGACTACCTCCTCATATCC+CGG | 0.588192 | 1.3:+9237841 | None:intergenic |
| TAGAGAGATTCAGGTTCCCA+AGG | 0.590686 | 1.3:+9240152 | None:intergenic |
| ACCCTTGCCATACATCTTTG+GGG | 0.593909 | 1.3:-9240019 | MS.gene61680:CDS |
| GGCATCCATTTCTATAAACA+CGG | 0.597444 | 1.3:+9239275 | None:intergenic |
| AGCAAAATATCCCCAAAGAA+CGG | 0.599664 | 1.3:+9238960 | None:intergenic |
| ATACCTACCTCCGTTCTTTG+GGG | 0.600323 | 1.3:-9238970 | MS.gene61680:CDS |
| GGAATAACCGAAGATTTCAA+AGG | 0.600913 | 1.3:-9241704 | MS.gene61680:CDS |
| AAAGAATATGTAGAAAGTTG+GGG | 0.602432 | 1.3:+9241619 | None:intergenic |
| ATTATCCACTCAATATTTGG+TGG | 0.603688 | 1.3:-9241245 | MS.gene61680:CDS |
| GCCCCAAAGATGTATGGCAA+GGG | 0.606508 | 1.3:+9240018 | None:intergenic |
| TAGGTTTACTAGGGTTGCAG+AGG | 0.607582 | 1.3:-9240832 | MS.gene61680:CDS |
| GAAGGTGGTGAAGAGTGCGA+AGG | 0.614475 | 1.3:-9239349 | MS.gene61680:CDS |
| ACAGTTGATCCGAAGGAAGG+TGG | 0.614712 | 1.3:-9239364 | MS.gene61680:intron |
| ATGGTGTACATGATAACAGT+TGG | 0.615199 | 1.3:+9241191 | None:intergenic |
| TTGACACGGATACCTATTGG+TGG | 0.616417 | 1.3:-9238580 | MS.gene61680:CDS |
| TCTTGCACTTCTACTTACCA+TGG | 0.616641 | 1.3:+9240534 | None:intergenic |
| TATCCCCAAAGAACGGAGGT+AGG | 0.621214 | 1.3:+9238967 | None:intergenic |
| TCTCTCTTATAGCTATGAGA+AGG | 0.622750 | 1.3:+9238533 | None:intergenic |
| GTTGACCACCAAATATTGAG+TGG | 0.625187 | 1.3:+9241240 | None:intergenic |
| AATGTAGCTATTGTCTTGTG+TGG | 0.627927 | 1.3:+9238643 | None:intergenic |
| GAAGGACTCCATTTACTGGA+GGG | 0.628004 | 1.3:+9239749 | None:intergenic |
| TTACTTGTAGTGCCTTCTGG+GGG | 0.629233 | 1.3:+9238873 | None:intergenic |
| ATTCAATCAGGGTGCATACG+AGG | 0.629254 | 1.3:-9240287 | MS.gene61680:intron |
| TGGCAATTGATAGTCTCCCA+GGG | 0.629445 | 1.3:-9238933 | MS.gene61680:CDS |
| TCATAGCGTAGCTTCCAAGA+TGG | 0.632289 | 1.3:-9239953 | MS.gene61680:CDS |
| AGAGTTGGAGACTTTGAAGG+AGG | 0.633076 | 1.3:-9239157 | MS.gene61680:CDS |
| GATAATTCCACATATAGCTG+TGG | 0.636977 | 1.3:+9241262 | None:intergenic |
| GATGAGATGACAACTAATAG+GGG | 0.637701 | 1.3:-9238162 | MS.gene61680:CDS |
| AAGGAATGCATTAGGCAACA+AGG | 0.639810 | 1.3:-9239330 | MS.gene61680:CDS |
| AACCTTCTAGGAACACCAGA+TGG | 0.640956 | 1.3:+9240188 | None:intergenic |
| TGGTACTGACTCTACAAATG+AGG | 0.649995 | 1.3:+9238663 | None:intergenic |
| GCAACTGCAGGATATGGGAA+AGG | 0.654624 | 1.3:-9240043 | MS.gene61680:intron |
| TTAGTATGCATAGGGGACTG+AGG | 0.656982 | 1.3:+9239727 | None:intergenic |
| AAGTGAGTTCAAGATACCGA+AGG | 0.667136 | 1.3:-9240650 | MS.gene61680:CDS |
| AACAATACTTACGGTAGGCG+CGG | 0.669012 | 1.3:+9239254 | None:intergenic |
| GCAACTCCTACAATCAACAA+AGG | 0.672535 | 1.3:+9241218 | None:intergenic |
| GGAAGGACTCCATTTACTGG+AGG | 0.678944 | 1.3:+9239748 | None:intergenic |
| TTTACCCTGAAGAATCTACC+GGG | 0.685166 | 1.3:-9237859 | MS.gene61680:CDS |
| AGCCTGTTGCATGAAAAGAA+CGG | 0.686568 | 1.3:+9240788 | None:intergenic |
| AAAATATCCCCAAAGAACGG+AGG | 0.705867 | 1.3:+9238963 | None:intergenic |
| GTACCTTAACTACAGTCCAG+TGG | 0.707187 | 1.3:+9240129 | None:intergenic |
| TAAACTCTTAGTATGCATAG+GGG | 0.760737 | 1.3:+9239720 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAGAATTAGTTATAAT+TGG | + | chr1.3:9241580-9241599 | None:intergenic | 10.0% |
| !!! | TTCTAGTTTATATAAAAAAA+TGG | + | chr1.3:9239992-9240011 | None:intergenic | 10.0% |
| !! | ATGAAAACTAATGAAAAAAA+TGG | - | chr1.3:9240443-9240462 | MS.gene61680:intron | 15.0% |
| !! | GATTATTAATTCTACAAATA+TGG | + | chr1.3:9240808-9240827 | None:intergenic | 15.0% |
| !!! | AACTCTTTATTTTATGTTTA+TGG | - | chr1.3:9241674-9241693 | MS.gene61680:CDS | 15.0% |
| !!! | ATTTTGAAACTATATTTGAA+AGG | + | chr1.3:9238045-9238064 | None:intergenic | 15.0% |
| !!! | ATTTTTTATTATTTGGTCTT+AGG | - | chr1.3:9240388-9240407 | MS.gene61680:intron | 15.0% |
| !!! | TAGAATTTTATCAGATTTAT+AGG | + | chr1.3:9241208-9241227 | None:intergenic | 15.0% |
| !!! | TATCATATAAGTTATTTCTA+TGG | - | chr1.3:9238542-9238561 | MS.gene61680:CDS | 15.0% |
| !!! | TATTTATGTTATTTGATCTA+TGG | - | chr1.3:9238070-9238089 | MS.gene61680:CDS | 15.0% |
| !!! | TTATATATATACATGCTTTT+AGG | + | chr1.3:9241289-9241308 | None:intergenic | 15.0% |
| !!! | TTGAATTTTATAAACAAGAT+TGG | - | chr1.3:9237896-9237915 | MS.gene61680:intron | 15.0% |
| !! | AAATTTATATTCCTCTAACA+AGG | + | chr1.3:9238957-9238976 | None:intergenic | 20.0% |
| !! | AACATACTGAAATTGATAAA+TGG | + | chr1.3:9241178-9241197 | None:intergenic | 20.0% |
| !! | AATTGTGAAGTTAAAATACT+CGG | + | chr1.3:9238880-9238899 | None:intergenic | 20.0% |
| !! | AATTTATATTCCTCTAACAA+GGG | + | chr1.3:9238956-9238975 | None:intergenic | 20.0% |
| !! | ACATACTGAAATTGATAAAT+GGG | + | chr1.3:9241177-9241196 | None:intergenic | 20.0% |
| !! | AGTAGTAAATATTTAGACTT+CGG | + | chr1.3:9239093-9239112 | None:intergenic | 20.0% |
| !! | ATTAAACTCTTTGATCTATA+AGG | - | chr1.3:9238229-9238248 | MS.gene61680:CDS | 20.0% |
| !! | ATTAATTCTACAAATATGGA+AGG | + | chr1.3:9240804-9240823 | None:intergenic | 20.0% |
| !! | CAAATAAAAAAACTCTTTCA+AGG | - | chr1.3:9241535-9241554 | MS.gene61680:intron | 20.0% |
| !! | TAATAAAAAATGTTCACCAT+TGG | + | chr1.3:9240379-9240398 | None:intergenic | 20.0% |
| !! | TAGAGGAATATAAATTTCAT+TGG | - | chr1.3:9238960-9238979 | MS.gene61680:CDS | 20.0% |
| !! | TTAAACTCTTTGATCTATAA+GGG | - | chr1.3:9238230-9238249 | MS.gene61680:CDS | 20.0% |
| !!! | AAACTATATTTGAAAGGTTT+TGG | + | chr1.3:9238039-9238058 | None:intergenic | 20.0% |
| !!! | ACTTTTTTTTGTTAAACCTA+AGG | + | chr1.3:9241243-9241262 | None:intergenic | 20.0% |
| !!! | ATGCTAATGTTTAACTTTTA+TGG | - | chr1.3:9238636-9238655 | MS.gene61680:CDS | 20.0% |
| !!! | ATTAAGCTTTTTATCCAAAT+AGG | + | chr1.3:9239917-9239936 | None:intergenic | 20.0% |
| !!! | GAATTGATACTTTAGAATTA+AGG | + | chr1.3:9240157-9240176 | None:intergenic | 20.0% |
| !!! | GGTGAACATTTTTTATTATT+TGG | - | chr1.3:9240381-9240400 | MS.gene61680:intron | 20.0% |
| !!! | TGATAAAATTTTACCATTAG+TGG | + | chr1.3:9241154-9241173 | None:intergenic | 20.0% |
| !!! | TTAAGCTTTTTATCCAAATA+GGG | + | chr1.3:9239916-9239935 | None:intergenic | 20.0% |
| !!! | TTTATTTTATGTTTATGGCT+TGG | - | chr1.3:9241679-9241698 | MS.gene61680:CDS | 20.0% |
| ! | AAACATTAGCATTACACTTT+GGG | + | chr1.3:9238628-9238647 | None:intergenic | 25.0% |
| ! | AAAGAATATGTAGAAAGTTG+GGG | + | chr1.3:9237956-9237975 | None:intergenic | 25.0% |
| ! | AAATTTGTGGACAAATAATG+CGG | + | chr1.3:9239183-9239202 | None:intergenic | 25.0% |
| ! | ATCAAAAGGATATACATGTT+AGG | + | chr1.3:9239770-9239789 | None:intergenic | 25.0% |
| ! | CAAAGAATATGTAGAAAGTT+GGG | + | chr1.3:9237957-9237976 | None:intergenic | 25.0% |
| ! | GATAGATAACTTGATGTTTA+TGG | - | chr1.3:9240755-9240774 | MS.gene61680:intron | 25.0% |
| ! | TAAACATTAGCATTACACTT+TGG | + | chr1.3:9238629-9238648 | None:intergenic | 25.0% |
| ! | TAAGAGTCTAAAGAATCAAA+AGG | + | chr1.3:9239784-9239803 | None:intergenic | 25.0% |
| ! | TAGAAAAACATTGACATTGT+AGG | + | chr1.3:9239156-9239175 | None:intergenic | 25.0% |
| ! | TAGGCATCTATATGTTTAAT+AGG | + | chr1.3:9240488-9240507 | None:intergenic | 25.0% |
| ! | TCTGAATATGAGGAAATTAT+TGG | - | chr1.3:9241112-9241131 | MS.gene61680:intron | 25.0% |
| ! | TGGACTTATGTTATAGAAAT+AGG | + | chr1.3:9239972-9239991 | None:intergenic | 25.0% |
| ! | TTAATAGAGAAACAGGTAAA+TGG | - | chr1.3:9238013-9238032 | MS.gene61680:intron | 25.0% |
| ! | TTATTATGATGCAGAGTTAT+TGG | - | chr1.3:9241388-9241407 | MS.gene61680:intron | 25.0% |
| ! | TTTCTTGAAAATGTTTGATC+AGG | - | chr1.3:9241319-9241338 | MS.gene61680:intron | 25.0% |
| !! | AATTTACTTTCCATTTTGCT+AGG | + | chr1.3:9238849-9238868 | None:intergenic | 25.0% |
| !! | ACATGAAAACATTGATTGTA+TGG | + | chr1.3:9239235-9239254 | None:intergenic | 25.0% |
| !! | ACATTGATTGAAGAAATTTG+TGG | + | chr1.3:9239196-9239215 | None:intergenic | 25.0% |
| !! | ATTCTTTAGACTCTTATTTG+CGG | - | chr1.3:9239788-9239807 | MS.gene61680:intron | 25.0% |
| !! | CTATATTTTGCAATCTGTTA+TGG | - | chr1.3:9240968-9240987 | MS.gene61680:intron | 25.0% |
| !! | TATACAGTTTTTGCACAAAA+AGG | - | chr1.3:9238406-9238425 | MS.gene61680:intron | 25.0% |
| !! | TGTTTTTCTTCTTGGAATAA+TGG | - | chr1.3:9239691-9239710 | MS.gene61680:intron | 25.0% |
| !! | TTGCAATCATTTTCTCTTTT+GGG | - | chr1.3:9239002-9239021 | MS.gene61680:CDS | 25.0% |
| !!! | AATGACTTTAGATGGATTTT+AGG | + | chr1.3:9239505-9239524 | None:intergenic | 25.0% |
| !!! | CACAATTGTTTTGATCAATA+GGG | - | chr1.3:9238893-9238912 | MS.gene61680:CDS | 25.0% |
| !!! | TCACAATTGTTTTGATCAAT+AGG | - | chr1.3:9238892-9238911 | MS.gene61680:CDS | 25.0% |
| !!! | TCTACTTATTTTTAGTCCTT+AGG | - | chr1.3:9241224-9241243 | MS.gene61680:CDS | 25.0% |
| AAGCTATACTAAAGAGCTTA+TGG | - | chr1.3:9240023-9240042 | MS.gene61680:CDS | 30.0% | |
| AATCGTAGTAGCTTAACTTA+TGG | - | chr1.3:9241479-9241498 | MS.gene61680:intron | 30.0% | |
| ACCATTAGTGGTATATTATG+TGG | + | chr1.3:9241142-9241161 | None:intergenic | 30.0% | |
| AGAAAATGGCGATATTTAAC+AGG | - | chr1.3:9239058-9239077 | MS.gene61680:CDS | 30.0% | |
| AGACAATTTGAGAGAACTTA+AGG | + | chr1.3:9240097-9240116 | None:intergenic | 30.0% | |
| ATTAACTCTAACAGGCAAAT+AGG | + | chr1.3:9240507-9240526 | None:intergenic | 30.0% | |
| ATTAGATGCTTCTGAATATG+AGG | - | chr1.3:9241102-9241121 | MS.gene61680:intron | 30.0% | |
| ATTATCCACTCAATATTTGG+TGG | - | chr1.3:9238327-9238346 | MS.gene61680:intron | 30.0% | |
| CAAGAAGAAAAACATCATAG+TGG | + | chr1.3:9239685-9239704 | None:intergenic | 30.0% | |
| CTAAACTCTTAGTATGCATA+GGG | + | chr1.3:9239856-9239875 | None:intergenic | 30.0% | |
| GATTATCACTAGGTTTACTA+GGG | - | chr1.3:9238731-9238750 | MS.gene61680:intron | 30.0% | |
| GCAAAGAATATGTAGAAAGT+TGG | + | chr1.3:9237958-9237977 | None:intergenic | 30.0% | |
| GGAATTATCCACTCAATATT+TGG | - | chr1.3:9238324-9238343 | MS.gene61680:intron | 30.0% | |
| TAAACTCTTAGTATGCATAG+GGG | + | chr1.3:9239855-9239874 | None:intergenic | 30.0% | |
| TCCACATAATATACCACTAA+TGG | - | chr1.3:9241138-9241157 | MS.gene61680:CDS | 30.0% | |
| TCGCAAATACTTCATATGAT+TGG | - | chr1.3:9238150-9238169 | MS.gene61680:CDS | 30.0% | |
| TGTGCAAAAACTGTATAGAA+TGG | + | chr1.3:9238403-9238422 | None:intergenic | 30.0% | |
| TTAACCTTCTAACTATACTG+AGG | - | chr1.3:9238487-9238506 | MS.gene61680:CDS | 30.0% | |
| TTATGGTCATATTTGTTCCA+GGG | - | chr1.3:9238653-9238672 | MS.gene61680:CDS | 30.0% | |
| TTTATGGTCATATTTGTTCC+AGG | - | chr1.3:9238652-9238671 | MS.gene61680:CDS | 30.0% | |
| ! | CACTATGATGTTTTTCTTCT+TGG | - | chr1.3:9239683-9239702 | MS.gene61680:intron | 30.0% |
| ! | CTTGCAATCATTTTCTCTTT+TGG | - | chr1.3:9239001-9239020 | MS.gene61680:CDS | 30.0% |
| ! | TAAGTAGAAGTGCAAGAAAA+TGG | - | chr1.3:9239044-9239063 | MS.gene61680:CDS | 30.0% |
| ! | TTGGGGATATTTTGCTTATA+TGG | - | chr1.3:9240619-9240638 | MS.gene61680:CDS | 30.0% |
| !! | AAGTCTTCCTTTGAAATCTT+CGG | + | chr1.3:9237878-9237897 | None:intergenic | 30.0% |
| !! | ATTTAGCACTGACATTGTTA+TGG | - | chr1.3:9238197-9238216 | MS.gene61680:CDS | 30.0% |
| AACTATACTGAGGTTCTGTT+TGG | - | chr1.3:9238497-9238516 | MS.gene61680:CDS | 35.0% | |
| AATGTAGCTATTGTCTTGTG+TGG | + | chr1.3:9240932-9240951 | None:intergenic | 35.0% | |
| AGAACCTCAGTATAGTTAGA+AGG | + | chr1.3:9238494-9238513 | None:intergenic | 35.0% | |
| AGATTATGGTGTTCCAATGA+TGG | - | chr1.3:9239317-9239336 | MS.gene61680:CDS | 35.0% | |
| AGCAAAATATCCCCAAAGAA+CGG | + | chr1.3:9240615-9240634 | None:intergenic | 35.0% | |
| ATAAATGCCCCAAAGATGTA+TGG | + | chr1.3:9239563-9239582 | None:intergenic | 35.0% | |
| ATAGCTATGAGAAGGAAGAA+AGG | + | chr1.3:9241034-9241053 | None:intergenic | 35.0% | |
| ATGAGAAGGAAGAAAGGTAA+TGG | + | chr1.3:9241028-9241047 | None:intergenic | 35.0% | |
| ATGCATGTTCGATTATCACT+AGG | - | chr1.3:9238721-9238740 | MS.gene61680:intron | 35.0% | |
| ATGGTGTACATGATAACAGT+TGG | + | chr1.3:9238384-9238403 | None:intergenic | 35.0% | |
| CAATGAAGACAGACATATTC+AGG | - | chr1.3:9241505-9241524 | MS.gene61680:intron | 35.0% | |
| CGATTATCACTAGGTTTACT+AGG | - | chr1.3:9238730-9238749 | MS.gene61680:intron | 35.0% | |
| CTAAAAGTGATAAGGCGATA+AGG | + | chr1.3:9240562-9240581 | None:intergenic | 35.0% | |
| CTTTGCTCATTAACTCTAAC+AGG | + | chr1.3:9240515-9240534 | None:intergenic | 35.0% | |
| GAAATTTACAGTTGATCCGA+AGG | - | chr1.3:9240201-9240220 | MS.gene61680:CDS | 35.0% | |
| GAGCAACTTAATAGAGAAAC+AGG | - | chr1.3:9238006-9238025 | MS.gene61680:intron | 35.0% | |
| GATAATTCCACATATAGCTG+TGG | + | chr1.3:9238313-9238332 | None:intergenic | 35.0% | |
| GATGAGATGACAACTAATAG+GGG | - | chr1.3:9241410-9241429 | MS.gene61680:intron | 35.0% | |
| GCTAAACTCTTAGTATGCAT+AGG | + | chr1.3:9239857-9239876 | None:intergenic | 35.0% | |
| GGAAACAATATTCCACCAAT+AGG | + | chr1.3:9241007-9241026 | None:intergenic | 35.0% | |
| GGAAGCAACTCTGAATTATA+CGG | - | chr1.3:9240263-9240282 | MS.gene61680:CDS | 35.0% | |
| GGAATAACCGAAGATTTCAA+AGG | - | chr1.3:9237868-9237887 | MS.gene61680:intron | 35.0% | |
| GGATGAGATGACAACTAATA+GGG | - | chr1.3:9241409-9241428 | MS.gene61680:intron | 35.0% | |
| GGCATCCATTTCTATAAACA+CGG | + | chr1.3:9240300-9240319 | None:intergenic | 35.0% | |
| GTGTACTTGAGTTTATCTAC+CGG | + | chr1.3:9240135-9240154 | None:intergenic | 35.0% | |
| TAAAGAGTTGGAGACTTTGA+AGG | - | chr1.3:9240412-9240431 | MS.gene61680:intron | 35.0% | |
| TCTCTCTTATAGCTATGAGA+AGG | + | chr1.3:9241042-9241061 | None:intergenic | 35.0% | |
| TCTTCGGTTATTCCTCTAAA+TGG | + | chr1.3:9237862-9237881 | None:intergenic | 35.0% | |
| TGGATGAGATGACAACTAAT+AGG | - | chr1.3:9241408-9241427 | MS.gene61680:intron | 35.0% | |
| TGTACTTGAGTTTATCTACC+GGG | + | chr1.3:9240134-9240153 | None:intergenic | 35.0% | |
| TGTCAAGCCAACAATACTTA+CGG | + | chr1.3:9240330-9240349 | None:intergenic | 35.0% | |
| TTCCAATGATGGTAGTATGT+TGG | - | chr1.3:9239328-9239347 | MS.gene61680:CDS | 35.0% | |
| TTGAGAGAACTTAAGGAAAG+TGG | + | chr1.3:9240090-9240109 | None:intergenic | 35.0% | |
| TTGCAGTCAATGACTTTAGA+TGG | + | chr1.3:9239513-9239532 | None:intergenic | 35.0% | |
| TTTCATTGGCGCTATACAAA+TGG | - | chr1.3:9238974-9238993 | MS.gene61680:CDS | 35.0% | |
| ! | AGGCTATAGAGGTATAGATA+TGG | - | chr1.3:9238802-9238821 | MS.gene61680:intron | 35.0% |
| ! | CAATCTGTTATGGATTGACA+CGG | - | chr1.3:9240978-9240997 | MS.gene61680:intron | 35.0% |
| ! | CTGTACTGGTGTTAGAATAT+TGG | - | chr1.3:9237930-9237949 | MS.gene61680:intron | 35.0% |
| ! | TAGTTTGCATCGAATAACCT+TGG | + | chr1.3:9241073-9241092 | None:intergenic | 35.0% |
| ! | TCGAGCTTCTACTATCATTT+TGG | + | chr1.3:9241460-9241479 | None:intergenic | 35.0% |
| ! | TTTATGGCTTGGACTTGTAT+AGG | - | chr1.3:9241690-9241709 | MS.gene61680:CDS | 35.0% |
| ! | TTTCCCAAAATTGATTCCCT+GGG | + | chr1.3:9240658-9240677 | None:intergenic | 35.0% |
| !! | TATCCTTTTGATGACAGGAA+CGG | + | chr1.3:9240585-9240604 | None:intergenic | 35.0% |
| !! | TTGATCTATAAGGGAGCATT+TGG | - | chr1.3:9238239-9238258 | MS.gene61680:intron | 35.0% |
| !! | TTGGTCTTAGGTTAAAGAGT+TGG | - | chr1.3:9240400-9240419 | MS.gene61680:intron | 35.0% |
| !!! | CATTTGGTGATGTGTTTTAC+AGG | - | chr1.3:9238255-9238274 | MS.gene61680:intron | 35.0% |
| AAAATATCCCCAAAGAACGG+AGG | + | chr1.3:9240612-9240631 | None:intergenic | 40.0% | |
| AAACCTGCTATCATAACTGC+TGG | + | chr1.3:9239587-9239606 | None:intergenic | 40.0% | |
| AAGCCAACAATACTTACGGT+AGG | + | chr1.3:9240326-9240345 | None:intergenic | 40.0% | |
| AAGGAATGCATTAGGCAACA+AGG | - | chr1.3:9240242-9240261 | MS.gene61680:CDS | 40.0% | |
| AAGTGAGTTCAAGATACCGA+AGG | - | chr1.3:9238922-9238941 | MS.gene61680:CDS | 40.0% | |
| ACATCATAGTGGTAAGCAGA+TGG | + | chr1.3:9239674-9239693 | None:intergenic | 40.0% | |
| ACTTACTTGTAGTGCCTTCT+GGG | + | chr1.3:9240704-9240723 | None:intergenic | 40.0% | |
| AGAGTTTAGCGACTCTTAGA+AGG | - | chr1.3:9239867-9239886 | MS.gene61680:intron | 40.0% | |
| AGCCTGTTGCATGAAAAGAA+CGG | + | chr1.3:9238787-9238806 | None:intergenic | 40.0% | |
| AGGAACGGCTAAAAGTGATA+AGG | + | chr1.3:9240570-9240589 | None:intergenic | 40.0% | |
| AGGGTTGCAGAGGAATTATT+TGG | - | chr1.3:9238750-9238769 | MS.gene61680:intron | 40.0% | |
| ATATCCCGGTAGATTCTTCA+GGG | + | chr1.3:9241720-9241739 | None:intergenic | 40.0% | |
| ATTCCAGCAGTTATGATAGC+AGG | - | chr1.3:9239581-9239600 | MS.gene61680:intron | 40.0% | |
| CTATGTGCATACATGTCCAA+TGG | - | chr1.3:9240360-9240379 | MS.gene61680:intron | 40.0% | |
| GCAACTCCTACAATCAACAA+AGG | + | chr1.3:9238357-9238376 | None:intergenic | 40.0% | |
| GCTAACTCTTCCTAGCAAAA+TGG | - | chr1.3:9238836-9238855 | MS.gene61680:intron | 40.0% | |
| GGCTGCTTGGTAAGTATATT+TGG | - | chr1.3:9238461-9238480 | MS.gene61680:CDS | 40.0% | |
| GTACTTGAGTTTATCTACCG+GGG | + | chr1.3:9240133-9240152 | None:intergenic | 40.0% | |
| GTCCAACATACTACCATCAT+TGG | + | chr1.3:9239333-9239352 | None:intergenic | 40.0% | |
| GTTGACCACCAAATATTGAG+TGG | + | chr1.3:9238335-9238354 | None:intergenic | 40.0% | |
| GTTTACCCTGAAGAATCTAC+CGG | - | chr1.3:9241712-9241731 | MS.gene61680:CDS | 40.0% | |
| TAAGAGAGAGATTGCTTCCA+AGG | - | chr1.3:9241053-9241072 | MS.gene61680:intron | 40.0% | |
| TACCCTTGCCATACATCTTT+GGG | - | chr1.3:9239552-9239571 | MS.gene61680:intron | 40.0% | |
| TACTTACTTGTAGTGCCTTC+TGG | + | chr1.3:9240705-9240724 | None:intergenic | 40.0% | |
| TACTTGAGTTTATCTACCGG+GGG | + | chr1.3:9240132-9240151 | None:intergenic | 40.0% | |
| TCGGTATCTTGAACTCACTT+AGG | + | chr1.3:9238922-9238941 | None:intergenic | 40.0% | |
| TCTTGCACTTCTACTTACCA+TGG | + | chr1.3:9239041-9239060 | None:intergenic | 40.0% | |
| TGCACAAAAAGGCCAGAATT+AGG | - | chr1.3:9238417-9238436 | MS.gene61680:intron | 40.0% | |
| TGCTCTCCAAAAGCAATAAC+AGG | + | chr1.3:9237991-9238010 | None:intergenic | 40.0% | |
| TGGATTTGTGCAATCTGTAC+TGG | - | chr1.3:9237916-9237935 | MS.gene61680:intron | 40.0% | |
| TTGACATCCACAGCTATATG+TGG | - | chr1.3:9238303-9238322 | MS.gene61680:intron | 40.0% | |
| TTTACAGTTGATCCGAAGGA+AGG | - | chr1.3:9240205-9240224 | MS.gene61680:CDS | 40.0% | |
| TTTACCCTGAAGAATCTACC+GGG | - | chr1.3:9241713-9241732 | MS.gene61680:CDS | 40.0% | |
| TTTCATGCAACAGGCTATAG+AGG | - | chr1.3:9238791-9238810 | MS.gene61680:intron | 40.0% | |
| TTTGTTCCAGGGTTTGTGTT+TGG | - | chr1.3:9238664-9238683 | MS.gene61680:CDS | 40.0% | |
| ! | AACAAGGGATTTTCAGCCTT+CGG | + | chr1.3:9238941-9238960 | None:intergenic | 40.0% |
| ! | ACTCTTATTTGCGGCATTCT+TGG | - | chr1.3:9239797-9239816 | MS.gene61680:intron | 40.0% |
| ! | CAGGTAAGCACCATATTTTG+CGG | - | chr1.3:9239890-9239909 | MS.gene61680:CDS | 40.0% |
| ! | CTTTCCCAAAATTGATTCCC+TGG | + | chr1.3:9240659-9240678 | None:intergenic | 40.0% |
| ! | GCACTTCCTGTTATTGCTTT+TGG | - | chr1.3:9237982-9238001 | MS.gene61680:intron | 40.0% |
| ! | GGTAAGCAGATGGTTTTTGA+AGG | + | chr1.3:9239664-9239683 | None:intergenic | 40.0% |
| ! | GGTCAACCTTTGTTGATTGT+AGG | - | chr1.3:9238348-9238367 | MS.gene61680:intron | 40.0% |
| ! | TACCGTTCTTTTCATGCAAC+AGG | - | chr1.3:9238782-9238801 | MS.gene61680:intron | 40.0% |
| ! | TCTCCCAGGGAATCAATTTT+GGG | - | chr1.3:9240652-9240671 | MS.gene61680:CDS | 40.0% |
| ! | TGTCTTTTCGCGCAGAATTT+TGG | - | chr1.3:9240874-9240893 | MS.gene61680:CDS | 40.0% |
| ! | TTTTCGCGCAGAATTTTGGA+AGG | - | chr1.3:9240878-9240897 | MS.gene61680:CDS | 40.0% |
| !! | ATTAGGTGCCAAGCTGTTTT+TGG | - | chr1.3:9238434-9238453 | MS.gene61680:intron | 40.0% |
| !! | CAGGGAATCAATTTTGGGAA+AGG | - | chr1.3:9240657-9240676 | MS.gene61680:CDS | 40.0% |
| !! | GTAGGTATCCTTTTGATGAC+AGG | + | chr1.3:9240590-9240609 | None:intergenic | 40.0% |
| !! | TGGTACTGACTCTACAAATG+AGG | + | chr1.3:9240912-9240931 | None:intergenic | 40.0% |
| !!! | TTGGTGATGTGTTTTACAGG+TGG | - | chr1.3:9238258-9238277 | MS.gene61680:intron | 40.0% |
| AACAATACTTACGGTAGGCG+CGG | + | chr1.3:9240321-9240340 | None:intergenic | 45.0% | |
| AACAGCTTGGCACCTAATTC+TGG | + | chr1.3:9238432-9238451 | None:intergenic | 45.0% | |
| AACCTGAATCTCTCTACCAC+TGG | - | chr1.3:9239427-9239446 | MS.gene61680:intron | 45.0% | |
| ACACCAGATGGAACTTTGCT+CGG | + | chr1.3:9239375-9239394 | None:intergenic | 45.0% | |
| ACCCTTGCCATACATCTTTG+GGG | - | chr1.3:9239553-9239572 | MS.gene61680:intron | 45.0% | |
| AGAGTGCGAAGGAATGCATT+AGG | - | chr1.3:9240234-9240253 | MS.gene61680:CDS | 45.0% | |
| AGATGGAACTTTGCTCGGTA+TGG | + | chr1.3:9239370-9239389 | None:intergenic | 45.0% | |
| AGTGGACAAAGCAACCTTCT+AGG | + | chr1.3:9239399-9239418 | None:intergenic | 45.0% | |
| ATACCGAGCAAAGTTCCATC+TGG | - | chr1.3:9239369-9239388 | MS.gene61680:intron | 45.0% | |
| ATACCTACCTCCGTTCTTTG+GGG | - | chr1.3:9240602-9240621 | MS.gene61680:CDS | 45.0% | |
| ATTCAATCAGGGTGCATACG+AGG | - | chr1.3:9239285-9239304 | MS.gene61680:CDS | 45.0% | |
| ATTGAATGCCAAAGGGAGAC+AGG | + | chr1.3:9239272-9239291 | None:intergenic | 45.0% | |
| CACCCTGATTGAATGCCAAA+GGG | + | chr1.3:9239279-9239298 | None:intergenic | 45.0% | |
| CATATCCCGGTAGATTCTTC+AGG | + | chr1.3:9241721-9241740 | None:intergenic | 45.0% | |
| CCAAATAGGGCCGCAAAATA+TGG | + | chr1.3:9239903-9239922 | None:intergenic | 45.0% | |
| CTACCACTGGACTGTAGTTA+AGG | - | chr1.3:9239440-9239459 | MS.gene61680:intron | 45.0% | |
| CTCCCTTTGGCATTCAATCA+GGG | - | chr1.3:9239274-9239293 | MS.gene61680:CDS | 45.0% | |
| CTTACTTGTAGTGCCTTCTG+GGG | + | chr1.3:9240703-9240722 | None:intergenic | 45.0% | |
| GAAGGACTCCATTTACTGGA+GGG | + | chr1.3:9239826-9239845 | None:intergenic | 45.0% | |
| GATACCTACCTCCGTTCTTT+GGG | - | chr1.3:9240601-9240620 | MS.gene61680:CDS | 45.0% | |
| GCGAGCCGTGTTTATAGAAA+TGG | - | chr1.3:9240292-9240311 | MS.gene61680:intron | 45.0% | |
| GGATTGACACGGATACCTAT+TGG | - | chr1.3:9240989-9241008 | MS.gene61680:intron | 45.0% | |
| GGCTGAAAATCCCTTGTTAG+AGG | - | chr1.3:9238943-9238962 | MS.gene61680:CDS | 45.0% | |
| GTACCCTTGCCATACATCTT+TGG | - | chr1.3:9239551-9239570 | MS.gene61680:intron | 45.0% | |
| GTACCTTAACTACAGTCCAG+TGG | + | chr1.3:9239446-9239465 | None:intergenic | 45.0% | |
| TAACTTCTCCTGTCTCCCTT+TGG | - | chr1.3:9239261-9239280 | MS.gene61680:intron | 45.0% | |
| TAGCCGTTCCTGTCATCAAA+AGG | - | chr1.3:9240579-9240598 | MS.gene61680:CDS | 45.0% | |
| TAGGTTTACTAGGGTTGCAG+AGG | - | chr1.3:9238740-9238759 | MS.gene61680:intron | 45.0% | |
| TCATAGCGTAGCTTCCAAGA+TGG | - | chr1.3:9239619-9239638 | MS.gene61680:intron | 45.0% | |
| TCTCCCTTTGGCATTCAATC+AGG | - | chr1.3:9239273-9239292 | MS.gene61680:CDS | 45.0% | |
| TGACTGCAACTGCAGGATAT+GGG | - | chr1.3:9239524-9239543 | MS.gene61680:intron | 45.0% | |
| TGAGGAAGGACTCCATTTAC+TGG | + | chr1.3:9239830-9239849 | None:intergenic | 45.0% | |
| TGATGTCCAAACACAAACCC+TGG | + | chr1.3:9238673-9238692 | None:intergenic | 45.0% | |
| TTACTTGTAGTGCCTTCTGG+GGG | + | chr1.3:9240702-9240721 | None:intergenic | 45.0% | |
| TTAGTATGCATAGGGGACTG+AGG | + | chr1.3:9239848-9239867 | None:intergenic | 45.0% | |
| TTCCAAGATGGCTCAACAGA+AGG | - | chr1.3:9239631-9239650 | MS.gene61680:intron | 45.0% | |
| TTCCATCTGGTGTTCCTAGA+AGG | - | chr1.3:9239382-9239401 | MS.gene61680:intron | 45.0% | |
| TTCCTTCTGTTGAGCCATCT+TGG | + | chr1.3:9239636-9239655 | None:intergenic | 45.0% | |
| TTGACACGGATACCTATTGG+TGG | - | chr1.3:9240992-9241011 | MS.gene61680:intron | 45.0% | |
| TTGACTGCAACTGCAGGATA+TGG | - | chr1.3:9239523-9239542 | MS.gene61680:intron | 45.0% | |
| TTTAGCGACTCTTAGAAGGC+AGG | - | chr1.3:9239871-9239890 | MS.gene61680:intron | 45.0% | |
| ! | AACCTTCTAGGAACACCAGA+TGG | + | chr1.3:9239387-9239406 | None:intergenic | 45.0% |
| ! | AAGTCATTGACTGCAACTGC+AGG | - | chr1.3:9239517-9239536 | MS.gene61680:intron | 45.0% |
| ! | AGAGTTGGAGACTTTGAAGG+AGG | - | chr1.3:9240415-9240434 | MS.gene61680:intron | 45.0% |
| ! | ATGGCAATTGATAGTCTCCC+AGG | - | chr1.3:9240638-9240657 | MS.gene61680:CDS | 45.0% |
| ! | CCATATTTTGCGGCCCTATT+TGG | - | chr1.3:9239900-9239919 | MS.gene61680:CDS | 45.0% |
| ! | GTCTCCCAGGGAATCAATTT+TGG | - | chr1.3:9240651-9240670 | MS.gene61680:CDS | 45.0% |
| ! | GTTGCTTTGTCCACTTCCTT+GGG | - | chr1.3:9239404-9239423 | MS.gene61680:intron | 45.0% |
| ! | TAGAGAGATTCAGGTTCCCA+AGG | + | chr1.3:9239423-9239442 | None:intergenic | 45.0% |
| ! | TGGCAATTGATAGTCTCCCA+GGG | - | chr1.3:9240639-9240658 | MS.gene61680:CDS | 45.0% |
| ! | TTCTTTTCATCACCCCCAGA+AGG | - | chr1.3:9240687-9240706 | MS.gene61680:intron | 45.0% |
| !!! | GTGTGTTTTTAGTCCCTCGT+CGG | - | chr1.3:9241261-9241280 | MS.gene61680:CDS | 45.0% |
| !!! | TGCCAAGCTGTTTTTGGCTT+GGG | - | chr1.3:9238440-9238459 | MS.gene61680:CDS | 45.0% |
| !!! | TGGGTTACTTTTCACTGCCA+TGG | - | chr1.3:9239021-9239040 | MS.gene61680:CDS | 45.0% |
| ACAGTTGATCCGAAGGAAGG+TGG | - | chr1.3:9240208-9240227 | MS.gene61680:CDS | 50.0% | |
| AGCCCAAGCCAAAAACAGCT+TGG | + | chr1.3:9238445-9238464 | None:intergenic | 50.0% | |
| CACTCTTCACCACCTTCCTT+CGG | + | chr1.3:9240220-9240239 | None:intergenic | 50.0% | |
| CTTGGTCTCCCTCCAGTAAA+TGG | - | chr1.3:9239815-9239834 | MS.gene61680:intron | 50.0% | |
| GCAACTGCAGGATATGGGAA+AGG | - | chr1.3:9239529-9239548 | MS.gene61680:intron | 50.0% | |
| GCACCCTGATTGAATGCCAA+AGG | + | chr1.3:9239280-9239299 | None:intergenic | 50.0% | |
| GCCCCAAAGATGTATGGCAA+GGG | + | chr1.3:9239557-9239576 | None:intergenic | 50.0% | |
| GGAAGGACTCCATTTACTGG+AGG | + | chr1.3:9239827-9239846 | None:intergenic | 50.0% | |
| GGATACCTACCTCCGTTCTT+TGG | - | chr1.3:9240600-9240619 | MS.gene61680:CDS | 50.0% | |
| GTCCAGTGGTAGAGAGATTC+AGG | + | chr1.3:9239432-9239451 | None:intergenic | 50.0% | |
| GTCTCACAAGTGATTACCCC+CGG | - | chr1.3:9240113-9240132 | MS.gene61680:intron | 50.0% | |
| TATCCCCAAAGAACGGAGGT+AGG | + | chr1.3:9240608-9240627 | None:intergenic | 50.0% | |
| TATGCATAGGGGACTGAGGA+AGG | + | chr1.3:9239844-9239863 | None:intergenic | 50.0% | |
| TGCCCCAAAGATGTATGGCA+AGG | + | chr1.3:9239558-9239577 | None:intergenic | 50.0% | |
| ! | ATGCTTTTAGGCTCCGACGA+GGG | + | chr1.3:9241277-9241296 | None:intergenic | 50.0% |
| ! | CGAGGTGTCATCGCAGATTA+TGG | - | chr1.3:9239303-9239322 | MS.gene61680:CDS | 50.0% |
| ! | GATTCAGGTTCCCAAGGAAG+TGG | + | chr1.3:9239417-9239436 | None:intergenic | 50.0% |
| ! | GCGCCTACCGTAAGTATTGT+TGG | - | chr1.3:9240320-9240339 | MS.gene61680:intron | 50.0% |
| ! | GGTTGCTTTGTCCACTTCCT+TGG | - | chr1.3:9239403-9239422 | MS.gene61680:intron | 50.0% |
| !!! | GTGCCAAGCTGTTTTTGGCT+TGG | - | chr1.3:9238439-9238458 | MS.gene61680:CDS | 50.0% |
| !!! | TGTTTTTGGCTTGGGCTGCT+TGG | - | chr1.3:9238448-9238467 | MS.gene61680:CDS | 50.0% |
| ! | CATGCTTTTAGGCTCCGACG+AGG | + | chr1.3:9241278-9241297 | None:intergenic | 55.0% |
| ! | GAAGGTGGTGAAGAGTGCGA+AGG | - | chr1.3:9240223-9240242 | MS.gene61680:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 9237853 | 9241741 | 9237853 | ID=MS.gene61680 |
| chr1.3 | mRNA | 9237853 | 9241741 | 9237853 | ID=MS.gene61680.t1;Parent=MS.gene61680 |
| chr1.3 | exon | 9241567 | 9241741 | 9241567 | ID=MS.gene61680.t1.exon1;Parent=MS.gene61680.t1 |
| chr1.3 | CDS | 9241567 | 9241741 | 9241567 | ID=cds.MS.gene61680.t1;Parent=MS.gene61680.t1 |
| chr1.3 | exon | 9241125 | 9241317 | 9241125 | ID=MS.gene61680.t1.exon2;Parent=MS.gene61680.t1 |
| chr1.3 | CDS | 9241125 | 9241317 | 9241125 | ID=cds.MS.gene61680.t1;Parent=MS.gene61680.t1 |
| chr1.3 | exon | 9240782 | 9240920 | 9240782 | ID=MS.gene61680.t1.exon3;Parent=MS.gene61680.t1 |
| chr1.3 | CDS | 9240782 | 9240920 | 9240782 | ID=cds.MS.gene61680.t1;Parent=MS.gene61680.t1 |
| chr1.3 | exon | 9240515 | 9240680 | 9240515 | ID=MS.gene61680.t1.exon4;Parent=MS.gene61680.t1 |
| chr1.3 | CDS | 9240515 | 9240680 | 9240515 | ID=cds.MS.gene61680.t1;Parent=MS.gene61680.t1 |
| chr1.3 | exon | 9240133 | 9240299 | 9240133 | ID=MS.gene61680.t1.exon5;Parent=MS.gene61680.t1 |
| chr1.3 | CDS | 9240133 | 9240299 | 9240133 | ID=cds.MS.gene61680.t1;Parent=MS.gene61680.t1 |
| chr1.3 | exon | 9239882 | 9240055 | 9239882 | ID=MS.gene61680.t1.exon6;Parent=MS.gene61680.t1 |
| chr1.3 | CDS | 9239882 | 9240055 | 9239882 | ID=cds.MS.gene61680.t1;Parent=MS.gene61680.t1 |
| chr1.3 | exon | 9239702 | 9239797 | 9239702 | ID=MS.gene61680.t1.exon7;Parent=MS.gene61680.t1 |
| chr1.3 | CDS | 9239702 | 9239797 | 9239702 | ID=cds.MS.gene61680.t1;Parent=MS.gene61680.t1 |
| chr1.3 | exon | 9239266 | 9239382 | 9239266 | ID=MS.gene61680.t1.exon8;Parent=MS.gene61680.t1 |
| chr1.3 | CDS | 9239266 | 9239382 | 9239266 | ID=cds.MS.gene61680.t1;Parent=MS.gene61680.t1 |
| chr1.3 | exon | 9238877 | 9239184 | 9238877 | ID=MS.gene61680.t1.exon9;Parent=MS.gene61680.t1 |
| chr1.3 | CDS | 9238877 | 9239184 | 9238877 | ID=cds.MS.gene61680.t1;Parent=MS.gene61680.t1 |
| chr1.3 | exon | 9238435 | 9238705 | 9238435 | ID=MS.gene61680.t1.exon10;Parent=MS.gene61680.t1 |
| chr1.3 | CDS | 9238435 | 9238705 | 9238435 | ID=cds.MS.gene61680.t1;Parent=MS.gene61680.t1 |
| chr1.3 | exon | 9238068 | 9238253 | 9238068 | ID=MS.gene61680.t1.exon11;Parent=MS.gene61680.t1 |
| chr1.3 | CDS | 9238068 | 9238253 | 9238068 | ID=cds.MS.gene61680.t1;Parent=MS.gene61680.t1 |
| chr1.3 | exon | 9237853 | 9237882 | 9237853 | ID=MS.gene61680.t1.exon12;Parent=MS.gene61680.t1 |
| chr1.3 | CDS | 9237853 | 9237882 | 9237853 | ID=cds.MS.gene61680.t1;Parent=MS.gene61680.t1 |
| Gene Sequence |
| Protein sequence |
