AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene62128

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62128.t1 MTR_0009s0250 94.571 350 19 0 1 350 1 350 0.0 684
MS.gene62128.t1 MTR_2g087292 72.571 350 27 3 1 350 1 281 7.44e-172 479
MS.gene62128.t1 MTR_3g021460 39.474 342 182 8 12 342 12 339 2.38e-74 234
MS.gene62128.t1 MTR_2g461580 38.012 342 187 7 12 342 12 339 3.31e-73 231
MS.gene62128.t1 MTR_3g005650 31.965 341 209 9 9 336 9 339 1.53e-54 182
MS.gene62128.t1 MTR_3g098270 33.427 356 216 11 5 342 6 358 1.66e-54 183
MS.gene62128.t1 MTR_8g079050 34.393 346 203 10 11 334 13 356 2.51e-54 182
MS.gene62128.t1 MTR_3g052580 34.049 326 195 10 27 336 22 343 5.08e-54 182
MS.gene62128.t1 MTR_3g024510 33.430 344 202 12 11 336 17 351 6.39e-54 181
MS.gene62128.t1 MTR_3g052580 34.049 326 195 10 27 336 21 342 6.46e-54 182
MS.gene62128.t1 MTR_5g093090 35.258 329 186 10 28 336 23 344 1.85e-53 180
MS.gene62128.t1 MTR_0565s0010 33.236 343 202 12 12 336 13 346 4.20e-53 179
MS.gene62128.t1 MTR_4g035353 32.059 340 212 10 11 335 9 344 2.10e-52 177
MS.gene62128.t1 MTR_5g078210 34.286 315 190 8 35 336 27 337 8.12e-52 176
MS.gene62128.t1 MTR_3g005660 32.231 363 215 11 3 340 1 357 1.22e-51 176
MS.gene62128.t1 MTR_3g052490 35.347 331 182 12 29 339 28 346 2.67e-51 174
MS.gene62128.t1 MTR_2g033930 32.267 344 213 9 6 334 5 343 5.50e-51 174
MS.gene62128.t1 MTR_3g052480 33.837 331 191 12 27 336 27 350 1.53e-50 172
MS.gene62128.t1 MTR_2g033920 34.706 340 196 11 12 334 18 348 7.95e-50 171
MS.gene62128.t1 MTR_5g009100 33.123 317 193 8 35 336 48 360 1.32e-49 171
MS.gene62128.t1 MTR_7g116510 35.535 318 185 9 33 334 25 338 2.01e-49 169
MS.gene62128.t1 MTR_1g024890 33.237 346 208 9 6 334 5 344 6.05e-49 168
MS.gene62128.t1 MTR_8g087890 31.805 349 210 12 10 340 10 348 6.79e-49 168
MS.gene62128.t1 MTR_7g116570 33.333 321 191 9 33 336 34 348 3.06e-48 167
MS.gene62128.t1 MTR_4g108690 33.651 315 186 8 35 332 29 337 9.93e-48 165
MS.gene62128.t1 MTR_8g014910 34.056 323 193 11 31 337 30 348 1.31e-47 164
MS.gene62128.t1 MTR_4g122200 32.456 342 203 10 10 334 18 348 2.04e-47 164
MS.gene62128.t1 MTR_1g069175 31.461 356 214 10 1 336 4 349 2.35e-47 164
MS.gene62128.t1 MTR_3g435540 33.333 333 193 9 35 350 25 345 2.95e-47 164
MS.gene62128.t1 MTR_1g079540 33.742 326 195 9 27 337 27 346 8.00e-47 163
MS.gene62128.t1 MTR_8g075230 34.294 347 201 13 13 339 14 353 1.20e-46 162
MS.gene62128.t1 MTR_1g079530 33.053 357 203 14 3 340 2 341 9.21e-46 160
MS.gene62128.t1 MTR_6g021530 31.642 335 208 10 13 330 8 338 2.37e-44 156
MS.gene62128.t1 MTR_7g116520 30.861 337 208 10 11 330 14 342 2.59e-44 156
MS.gene62128.t1 MTR_2g015080 32.945 343 198 12 11 327 16 352 3.93e-44 155
MS.gene62128.t1 MTR_2g084585 32.198 323 200 10 31 338 28 346 8.71e-44 154
MS.gene62128.t1 MTR_5g093090 37.091 275 150 8 28 285 23 291 1.92e-43 152
MS.gene62128.t1 MTR_7g116500 31.195 343 208 11 15 337 14 348 2.54e-43 154
MS.gene62128.t1 MTR_5g084750 32.143 336 207 10 11 332 12 340 4.63e-43 152
MS.gene62128.t1 MTR_2g100620 32.440 336 197 12 24 338 22 348 1.41e-42 151
MS.gene62128.t1 MTR_8g074560 32.578 353 210 11 1 332 1 346 2.08e-42 151
MS.gene62128.t1 MTR_4g056160 30.618 356 203 10 9 338 9 346 2.45e-42 150
MS.gene62128.t1 MTR_5g022630 32.386 352 211 15 8 339 18 362 3.55e-42 150
MS.gene62128.t1 MTR_5g078210 32.857 280 172 7 35 302 27 302 5.32e-42 149
MS.gene62128.t1 MTR_2g017925 31.595 326 187 12 29 336 29 336 5.63e-42 150
MS.gene62128.t1 MTR_8g074570 32.486 354 215 13 1 336 7 354 7.02e-42 150
MS.gene62128.t1 MTR_2g017955 31.481 324 192 11 30 336 30 340 7.71e-42 150
MS.gene62128.t1 MTR_2g044100 30.659 349 207 12 11 332 15 355 1.49e-41 149
MS.gene62128.t1 MTR_8g022790 34.472 322 180 13 28 332 32 339 1.99e-41 148
MS.gene62128.t1 MTR_1g025720 31.395 344 202 15 11 330 11 344 3.35e-41 148
MS.gene62128.t1 MTR_3g023220 32.628 331 181 15 26 336 26 334 4.52e-41 147
MS.gene62128.t1 MTR_0127s0040 34.615 234 143 3 127 350 2 235 4.69e-41 144
MS.gene62128.t1 MTR_1g025760 32.092 349 210 13 1 329 46 387 1.14e-40 147
MS.gene62128.t1 MTR_3g464730 30.086 349 225 11 10 343 5 349 1.34e-40 146
MS.gene62128.t1 MTR_5g022640 31.909 351 213 16 8 339 18 361 1.39e-40 146
MS.gene62128.t1 MTR_5g084770 31.657 338 203 12 11 330 10 337 1.57e-40 146
MS.gene62128.t1 MTR_1g025780 33.758 314 183 11 31 327 39 344 2.32e-40 145
MS.gene62128.t1 MTR_2g017965 30.368 326 196 11 29 336 29 341 9.60e-40 144
MS.gene62128.t1 MTR_2g033920 34.843 287 164 9 12 284 18 295 1.03e-39 142
MS.gene62128.t1 MTR_8g087870 30.864 324 190 12 30 336 26 332 1.29e-39 143
MS.gene62128.t1 MTR_1g025700 33.333 315 180 14 31 325 48 352 2.64e-39 143
MS.gene62128.t1 MTR_7g008060 31.090 312 185 9 33 330 33 328 3.67e-39 142
MS.gene62128.t1 MTR_4g056280 32.484 314 195 10 31 330 28 338 1.27e-38 141
MS.gene62128.t1 MTR_3g114090 33.871 310 184 11 32 325 35 339 2.00e-38 140
MS.gene62128.t1 MTR_4g019880 30.878 353 212 12 1 334 7 346 2.60e-38 140
MS.gene62128.t1 MTR_2g017915 30.124 322 180 11 29 336 29 319 3.98e-38 139
MS.gene62128.t1 MTR_5g074270 30.909 330 209 10 19 332 19 345 4.04e-38 140
MS.gene62128.t1 MTR_3g082830 29.653 317 206 9 30 332 35 348 5.14e-38 139
MS.gene62128.t1 MTR_1g025680 32.353 340 201 13 7 325 6 337 6.81e-38 141
MS.gene62128.t1 MTR_8g031420 31.230 317 197 11 28 330 30 339 7.86e-38 139
MS.gene62128.t1 MTR_3g114120 32.154 311 189 11 31 325 45 349 1.57e-37 138
MS.gene62128.t1 MTR_1g025910 31.457 302 192 8 38 327 41 339 1.72e-37 138
MS.gene62128.t1 MTR_5g084790 30.599 317 203 9 30 332 29 342 6.77e-37 136
MS.gene62128.t1 MTR_2g017875 29.938 324 197 11 30 336 31 341 1.84e-36 135
MS.gene62128.t1 MTR_8g031430 29.360 344 221 13 1 330 6 341 1.23e-35 133
MS.gene62128.t1 MTR_8g074580 33.444 302 176 10 11 293 19 314 1.27e-35 134
MS.gene62128.t1 MTR_8g031400 29.042 334 218 10 10 330 14 341 3.47e-35 132
MS.gene62128.t1 MTR_8g022810 27.666 347 227 10 8 336 16 356 6.53e-35 131
MS.gene62128.t1 MTR_4g087985 27.855 359 232 11 6 341 10 364 1.84e-34 130
MS.gene62128.t1 MTR_8g075220 31.532 333 206 10 26 339 33 362 2.18e-34 130
MS.gene62128.t1 MTR_8g031390 29.394 330 211 12 15 330 19 340 2.02e-33 127
MS.gene62128.t1 MTR_8g075200 30.606 330 208 10 26 339 34 358 8.48e-33 126
MS.gene62128.t1 MTR_8g031390 28.664 307 196 10 15 313 19 310 4.87e-31 120
MS.gene62128.t1 MTR_5g093090 43.871 155 76 5 28 173 23 175 2.47e-30 115
MS.gene62128.t1 MTR_1g030340 28.493 365 217 12 1 329 9 365 1.90e-29 117
MS.gene62128.t1 MTR_5g083040 30.476 315 197 10 30 325 29 340 6.62e-29 115
MS.gene62128.t1 MTR_1g092690 29.231 325 186 13 22 325 40 341 2.22e-28 113
MS.gene62128.t1 MTR_7g104220 29.964 277 167 10 27 293 36 295 1.46e-27 111
MS.gene62128.t1 MTR_6g007100 29.003 331 203 14 25 334 25 344 6.58e-27 109
MS.gene62128.t1 MTR_6g007090 27.072 362 227 10 3 334 7 361 1.78e-26 108
MS.gene62128.t1 MTR_8g089805 26.282 312 200 8 3 293 12 314 3.30e-26 108
MS.gene62128.t1 MTR_7g033155 28.090 356 176 16 13 313 13 343 6.95e-25 104
MS.gene62128.t1 MTR_1g092740 29.670 273 158 9 34 293 39 290 1.69e-24 102
MS.gene62128.t1 MTR_1g030220 28.481 316 191 11 1 293 9 312 1.93e-24 103
MS.gene62128.t1 MTR_1g060500 28.135 327 197 15 27 331 36 346 3.28e-24 102
MS.gene62128.t1 MTR_1g060490 27.244 312 199 11 34 331 38 335 3.28e-24 102
MS.gene62128.t1 MTR_1g030268 28.485 330 198 11 32 330 39 361 2.09e-23 100
MS.gene62128.t1 MTR_7g033150 26.496 351 192 13 5 315 7 331 2.35e-23 100
MS.gene62128.t1 MTR_7g113860 27.222 360 215 14 15 339 15 362 3.19e-23 99.8
MS.gene62128.t1 MTR_1g079590 37.569 181 96 6 27 194 25 201 4.35e-23 95.9
MS.gene62128.t1 MTR_2g015580 25.575 348 226 13 11 332 29 369 6.90e-23 99.0
MS.gene62128.t1 MTR_7g116870 28.114 281 171 9 33 293 33 302 8.49e-23 98.6
MS.gene62128.t1 MTR_7g113860 27.123 365 217 15 11 339 17 368 1.27e-22 97.8
MS.gene62128.t1 MTR_2g018015 33.032 221 127 8 29 233 32 247 2.35e-22 95.9
MS.gene62128.t1 MTR_8g022810 28.125 224 145 6 8 221 16 233 2.42e-22 96.3
MS.gene62128.t1 MTR_7g087190 26.537 309 190 9 11 293 21 318 2.77e-22 97.1
MS.gene62128.t1 MTR_3g463960 24.796 367 227 14 6 332 10 367 5.27e-22 96.3
MS.gene62128.t1 MTR_3g463950 24.796 367 227 14 6 332 10 367 5.27e-22 96.3
MS.gene62128.t1 MTR_3g463970 24.796 367 227 14 6 332 10 367 5.27e-22 96.3
MS.gene62128.t1 MTR_3g463940 24.796 367 227 14 6 332 10 367 5.27e-22 96.3
MS.gene62128.t1 MTR_1g030275 27.066 351 216 11 12 330 18 360 7.85e-22 95.9
MS.gene62128.t1 MTR_1g030268 29.044 272 167 8 32 284 39 303 1.47e-21 94.4
MS.gene62128.t1 MTR_2g015630 27.303 304 196 10 12 293 10 310 1.67e-21 94.7
MS.gene62128.t1 MTR_7g033165 26.426 333 188 13 32 335 32 336 2.26e-21 94.4
MS.gene62128.t1 MTR_1g030230 26.197 355 216 12 12 330 11 355 3.37e-21 94.0
MS.gene62128.t1 MTR_2g015590 27.027 333 210 13 15 325 15 336 6.08e-21 93.2
MS.gene62128.t1 MTR_7g111780 26.625 323 205 12 33 334 36 347 7.08e-21 92.8
MS.gene62128.t1 MTR_1g092760 27.761 335 199 17 27 341 33 344 1.38e-20 91.7
MS.gene62128.t1 MTR_3g448360 26.389 360 220 13 5 332 4 350 1.96e-20 91.7
MS.gene62128.t1 MTR_0029s0100 27.812 320 188 13 1 293 1 304 5.05e-20 90.1
MS.gene62128.t1 MTR_2g015590 27.397 292 187 10 15 286 15 301 5.53e-20 89.7
MS.gene62128.t1 MTR_1g082390 27.869 305 192 11 6 293 8 301 7.01e-20 90.1
MS.gene62128.t1 MTR_6g007095 27.083 336 200 15 32 334 40 363 7.85e-20 91.3
MS.gene62128.t1 MTR_6g007095 26.263 297 188 12 59 334 393 679 6.18e-18 85.5
MS.gene62128.t1 MTR_2g079090 27.302 315 188 13 7 293 3 304 1.02e-19 89.4
MS.gene62128.t1 MTR_0029s0050 27.500 320 189 13 1 293 1 304 1.50e-19 89.0
MS.gene62128.t1 MTR_1g092750 25.161 310 196 11 34 325 41 332 1.64e-19 88.6
MS.gene62128.t1 MTR_3g438030 26.101 318 201 10 33 328 30 335 2.14e-19 88.6
MS.gene62128.t1 MTR_2g079080 27.302 315 188 13 7 293 3 304 3.41e-19 87.8
MS.gene62128.t1 MTR_3g069780 26.101 318 201 10 33 328 30 335 4.35e-19 87.8
MS.gene62128.t1 MTR_7g033165 28.125 288 156 13 32 290 32 297 7.25e-19 86.3
MS.gene62128.t1 MTR_1g060520 26.791 321 173 14 27 331 36 310 1.26e-18 85.9
MS.gene62128.t1 MTR_8g028160 24.855 346 214 13 24 332 27 363 1.45e-18 86.3
MS.gene62128.t1 MTR_2g015650 27.241 290 180 9 28 293 26 308 3.25e-18 85.1
MS.gene62128.t1 MTR_2g043980 26.948 308 185 13 13 293 15 309 3.34e-18 85.1
MS.gene62128.t1 MTR_8g038680 25.414 362 223 14 3 329 1 350 1.08e-17 83.6
MS.gene62128.t1 MTR_3g463930 24.324 370 232 15 6 332 10 374 1.24e-17 83.6
MS.gene62128.t1 MTR_6g049220 48.913 92 45 2 31 121 28 118 1.44e-17 79.7
MS.gene62128.t1 MTR_4g036375 47.778 90 45 2 31 119 28 116 3.15e-17 79.3
MS.gene62128.t1 MTR_8g012540 26.266 316 196 12 3 293 1 304 2.30e-16 79.3
MS.gene62128.t1 MTR_1g030265 26.761 284 162 9 85 330 53 328 4.42e-16 78.6
MS.gene62128.t1 MTR_8g089805 24.561 228 148 5 87 293 22 246 2.86e-15 76.3
MS.gene62128.t1 MTR_7g113860 26.132 287 172 11 88 339 13 294 1.19e-14 73.9
MS.gene62128.t1 MTR_2g017925 26.066 211 129 7 140 336 36 233 1.86e-14 72.8
MS.gene62128.t1 MTR_2g015670 26.042 288 172 10 28 293 26 294 2.58e-14 73.6
MS.gene62128.t1 MTR_5g074210 30.435 138 92 3 199 332 64 201 8.70e-14 70.1
MS.gene62128.t1 MTR_2g043990 25.256 293 155 12 13 278 77 332 7.37e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62128.t1 AT2G03980 46.584 322 159 7 32 342 42 361 1.42e-96 291
MS.gene62128.t1 AT2G03980 46.584 322 159 7 32 342 42 361 1.42e-96 291
MS.gene62128.t1 AT2G03980 46.584 322 159 7 32 342 42 361 1.42e-96 291
MS.gene62128.t1 AT2G03980 46.584 322 159 7 32 342 42 361 1.42e-96 291
MS.gene62128.t1 AT2G04020 41.615 322 133 8 32 342 42 319 2.88e-69 220
MS.gene62128.t1 AT5G15720 38.838 327 179 8 27 336 24 346 6.93e-66 212
MS.gene62128.t1 AT2G04020 49.510 204 99 2 32 231 42 245 3.24e-60 194
MS.gene62128.t1 AT5G08460 34.493 345 204 10 10 336 27 367 5.34e-57 190
MS.gene62128.t1 AT1G71691 33.234 334 203 9 31 350 53 380 1.01e-56 189
MS.gene62128.t1 AT1G33811 33.989 356 203 11 11 340 8 357 2.67e-55 185
MS.gene62128.t1 AT2G23540 34.341 364 193 13 7 334 14 367 7.07e-55 184
MS.gene62128.t1 AT1G06990 35.849 318 172 10 32 327 36 343 2.86e-53 179
MS.gene62128.t1 AT5G55050 38.253 332 177 11 31 340 37 362 4.33e-53 179
MS.gene62128.t1 AT4G10950 34.375 320 193 8 31 336 69 385 1.62e-52 179
MS.gene62128.t1 AT5G15720 38.628 277 151 6 27 288 24 296 2.11e-52 176
MS.gene62128.t1 AT2G04570 35.015 337 198 12 12 332 7 338 8.07e-51 173
MS.gene62128.t1 AT5G37690 34.012 344 203 9 12 336 1 339 1.46e-50 172
MS.gene62128.t1 AT1G29670 33.524 349 209 11 4 336 3 344 6.04e-50 171
MS.gene62128.t1 AT4G10950 33.750 320 191 9 31 336 69 381 1.46e-49 171
MS.gene62128.t1 AT2G31540 33.735 332 201 11 10 325 12 340 2.66e-49 169
MS.gene62128.t1 AT1G71250 32.849 344 206 10 14 336 16 355 4.68e-49 169
MS.gene62128.t1 AT1G29670 33.524 349 209 11 4 336 71 412 4.91e-49 170
MS.gene62128.t1 AT2G30310 32.544 338 209 11 6 327 7 341 3.09e-47 164
MS.gene62128.t1 AT2G24560 33.333 336 205 11 6 325 7 339 3.61e-47 164
MS.gene62128.t1 AT1G20132 34.545 330 196 12 27 341 55 379 4.47e-47 164
MS.gene62128.t1 AT1G58430 33.634 333 200 12 10 325 12 340 4.98e-47 163
MS.gene62128.t1 AT2G30220 34.111 343 200 14 6 329 7 342 5.93e-47 163
MS.gene62128.t1 AT1G29660 33.746 323 192 10 30 336 29 345 1.98e-46 162
MS.gene62128.t1 AT1G71691 34.717 265 156 6 31 284 53 311 2.61e-46 160
MS.gene62128.t1 AT4G18970 33.639 327 192 11 32 340 27 346 4.29e-46 160
MS.gene62128.t1 AT4G18970 33.639 327 192 11 32 340 27 346 1.12e-45 161
MS.gene62128.t1 AT3G50400 33.028 327 196 10 29 334 30 354 1.28e-45 160
MS.gene62128.t1 AT2G40250 33.030 330 198 11 23 333 26 351 1.72e-45 159
MS.gene62128.t1 AT5G37690 33.430 344 197 10 12 336 1 331 3.32e-45 158
MS.gene62128.t1 AT5G03810 31.889 323 202 9 31 338 28 347 6.87e-45 157
MS.gene62128.t1 AT1G75890 32.873 362 212 15 1 336 6 362 2.53e-44 156
MS.gene62128.t1 AT5G22810 31.988 322 205 7 31 338 32 353 2.81e-44 156
MS.gene62128.t1 AT4G28780 30.499 341 212 9 8 330 6 339 2.87e-44 156
MS.gene62128.t1 AT5G33370 32.087 321 191 10 33 334 30 342 3.69e-44 156
MS.gene62128.t1 AT1G75890 32.873 362 212 15 1 336 35 391 5.03e-44 156
MS.gene62128.t1 AT1G20130 32.919 322 192 8 29 329 200 518 1.10e-43 158
MS.gene62128.t1 AT1G20130 32.919 322 192 8 29 329 180 498 1.33e-43 157
MS.gene62128.t1 AT5G45670 31.304 345 211 12 11 336 6 343 2.94e-43 153
MS.gene62128.t1 AT5G03820 32.308 325 199 11 31 338 31 351 3.53e-43 153
MS.gene62128.t1 AT3G14820 33.129 326 194 12 22 330 18 336 4.64e-43 152
MS.gene62128.t1 AT5G03820 32.308 325 199 11 31 338 59 379 1.02e-42 152
MS.gene62128.t1 AT5G45960 32.036 334 192 11 16 325 32 354 1.03e-42 152
MS.gene62128.t1 AT1G75890 31.733 375 212 15 1 336 6 375 3.89e-42 150
MS.gene62128.t1 AT5G63170 31.385 325 200 8 14 327 9 321 4.53e-42 149
MS.gene62128.t1 AT1G75880 31.988 347 215 12 6 334 21 364 1.32e-41 149
MS.gene62128.t1 AT1G75880 31.897 348 215 12 6 334 21 365 1.71e-41 149
MS.gene62128.t1 AT5G41890 33.127 323 189 11 35 332 33 353 2.57e-41 149
MS.gene62128.t1 AT3G04290 29.714 350 213 11 1 330 1 337 3.79e-41 148
MS.gene62128.t1 AT1G74460 31.325 332 209 9 15 332 7 333 6.65e-41 147
MS.gene62128.t1 AT1G20120 31.065 338 209 12 18 338 63 393 7.82e-41 148
MS.gene62128.t1 AT5G42170 33.333 315 196 10 31 334 48 359 8.73e-41 147
MS.gene62128.t1 AT1G73610 30.120 332 203 9 6 325 11 325 2.14e-40 145
MS.gene62128.t1 AT3G16370 32.615 325 187 9 31 333 28 342 2.71e-40 145
MS.gene62128.t1 AT5G15720 33.333 270 161 7 84 336 48 315 3.71e-40 144
MS.gene62128.t1 AT3G53100 31.132 318 198 9 31 332 27 339 5.03e-39 142
MS.gene62128.t1 AT2G24560 34.448 299 175 11 6 288 7 300 5.85e-39 141
MS.gene62128.t1 AT2G42990 31.534 352 215 12 1 336 1 342 9.60e-39 141
MS.gene62128.t1 AT2G19010 29.878 328 189 14 29 336 26 332 2.78e-38 140
MS.gene62128.t1 AT2G19010 29.167 336 197 14 21 336 48 362 4.49e-38 140
MS.gene62128.t1 AT1G71120 34.084 311 179 12 31 325 29 329 5.06e-38 139
MS.gene62128.t1 AT1G53920 30.699 329 205 12 15 325 28 351 2.52e-37 138
MS.gene62128.t1 AT1G20135 29.091 330 209 9 12 329 8 324 8.05e-37 135
MS.gene62128.t1 AT1G59406 30.548 347 212 13 1 330 1 335 1.67e-36 135
MS.gene62128.t1 AT1G59030 30.548 347 212 13 1 330 1 335 1.67e-36 135
MS.gene62128.t1 AT1G58725 30.548 347 212 13 1 330 1 335 1.67e-36 135
MS.gene62128.t1 AT4G30140 30.435 322 197 12 27 336 27 333 2.10e-36 135
MS.gene62128.t1 AT5G18430 30.435 322 189 13 33 330 28 338 5.58e-36 134
MS.gene62128.t1 AT2G19060 30.745 322 192 13 31 336 28 334 1.01e-35 133
MS.gene62128.t1 AT5G33370 32.841 271 157 8 33 286 30 292 1.31e-35 132
MS.gene62128.t1 AT4G16230 39.614 207 106 7 29 221 26 227 1.63e-35 130
MS.gene62128.t1 AT1G58520 31.090 312 192 11 31 330 28 328 1.68e-34 129
MS.gene62128.t1 AT1G58525 31.090 312 192 11 31 330 28 328 1.68e-34 129
MS.gene62128.t1 AT1G71691 29.008 262 168 7 88 336 8 264 1.94e-34 128
MS.gene62128.t1 AT1G75900 30.000 320 200 11 31 333 41 353 5.87e-34 129
MS.gene62128.t1 AT1G75920 31.085 341 200 13 15 334 7 333 2.38e-33 126
MS.gene62128.t1 AT5G45950 30.435 345 210 14 13 345 26 352 5.95e-33 125
MS.gene62128.t1 AT1G75930 31.090 312 190 10 33 330 29 329 1.61e-32 124
MS.gene62128.t1 AT1G23500 31.579 304 189 9 31 325 33 326 1.81e-32 124
MS.gene62128.t1 AT2G19050 29.193 322 199 12 29 336 27 333 2.58e-32 124
MS.gene62128.t1 AT3G14225 28.963 328 196 12 33 332 37 355 1.09e-31 123
MS.gene62128.t1 AT3G14225 29.012 324 197 12 33 332 37 351 1.93e-31 122
MS.gene62128.t1 AT4G26790 29.907 321 200 11 30 332 26 339 1.92e-30 119
MS.gene62128.t1 AT4G26790 29.907 321 200 11 30 332 26 339 1.92e-30 119
MS.gene62128.t1 AT1G75920 30.056 356 199 14 15 334 2 343 2.72e-30 118
MS.gene62128.t1 AT5G40990 29.375 320 201 10 33 332 37 351 3.01e-30 119
MS.gene62128.t1 AT2G19050 31.746 252 153 8 29 270 27 269 2.16e-29 114
MS.gene62128.t1 AT1G53990 28.530 347 212 12 8 332 10 342 3.57e-29 115
MS.gene62128.t1 AT3G43550 30.033 303 176 11 1 284 1 286 5.57e-29 114
MS.gene62128.t1 AT1G54030 28.758 306 186 10 34 328 53 337 2.63e-28 114
MS.gene62128.t1 AT1G53940 27.829 327 202 11 33 332 39 358 8.81e-28 112
MS.gene62128.t1 AT3G43570 26.744 344 200 13 1 330 1 306 3.12e-27 109
MS.gene62128.t1 AT3G27950 26.558 369 220 13 1 334 1 353 3.68e-27 110
MS.gene62128.t1 AT1G75910 28.869 336 204 13 13 327 5 326 3.64e-26 107
MS.gene62128.t1 AT5G03610 28.481 316 195 14 27 325 37 338 1.45e-25 105
MS.gene62128.t1 AT1G54020 25.723 346 222 12 7 336 5 331 2.13e-25 105
MS.gene62128.t1 AT1G28640 27.451 306 181 10 7 284 11 303 3.24e-25 105
MS.gene62128.t1 AT1G54030 29.719 249 145 8 34 272 53 281 6.09e-25 103
MS.gene62128.t1 AT1G56670 26.997 363 212 14 7 334 10 354 7.25e-25 104
MS.gene62128.t1 AT1G53940 28.947 266 168 9 33 284 39 297 9.18e-25 102
MS.gene62128.t1 AT1G54790 29.934 304 181 10 10 293 13 304 2.63e-24 102
MS.gene62128.t1 AT4G01130 26.452 310 191 10 9 293 10 307 7.09e-24 101
MS.gene62128.t1 AT1G28610 26.752 314 186 12 9 293 9 307 3.07e-23 99.8
MS.gene62128.t1 AT2G27360 24.843 318 197 10 5 293 7 311 6.37e-23 99.0
MS.gene62128.t1 AT1G28600 26.460 291 170 10 33 293 31 307 6.75e-23 99.0
MS.gene62128.t1 AT4G01130 26.462 325 196 12 9 302 10 322 7.44e-23 97.8
MS.gene62128.t1 AT1G75920 29.097 299 171 12 58 334 26 305 7.53e-23 97.4
MS.gene62128.t1 AT5G14450 25.135 370 227 15 3 334 12 369 1.88e-22 97.4
MS.gene62128.t1 AT3G48460 27.697 343 201 14 34 343 39 367 2.39e-22 97.1
MS.gene62128.t1 AT1G31550 25.978 358 218 14 9 332 14 358 5.79e-22 96.3
MS.gene62128.t1 AT1G28650 26.403 303 192 8 6 284 10 305 6.03e-22 96.3
MS.gene62128.t1 AT1G56670 28.105 306 174 12 7 284 10 297 7.01e-22 94.7
MS.gene62128.t1 AT3G26430 27.760 317 193 12 1 293 1 305 2.74e-21 94.4
MS.gene62128.t1 AT1G28670 26.899 316 190 12 7 293 11 314 4.80e-21 93.6
MS.gene62128.t1 AT1G28570 25.786 318 197 9 3 293 6 311 5.92e-21 93.2
MS.gene62128.t1 AT1G28590 27.157 313 185 11 10 293 15 313 6.11e-21 93.6
MS.gene62128.t1 AT3G09930 27.239 268 176 8 34 293 40 296 9.00e-21 92.4
MS.gene62128.t1 AT3G09930 27.239 268 176 8 34 293 40 296 9.00e-21 92.4
MS.gene62128.t1 AT1G31550 26.780 295 176 10 9 276 14 295 1.03e-19 89.7
MS.gene62128.t1 AT2G31550 28.497 193 126 5 154 334 16 208 1.09e-19 86.7
MS.gene62128.t1 AT1G28660 26.349 315 192 11 7 293 11 313 1.15e-19 89.7
MS.gene62128.t1 AT1G28580 25.796 314 186 11 29 313 33 328 2.62e-19 88.6
MS.gene62128.t1 AT1G54790 27.019 322 187 11 1 293 1 303 4.09e-19 87.8
MS.gene62128.t1 AT3G05180 27.759 299 184 11 16 293 21 308 5.12e-19 87.8
MS.gene62128.t1 AT3G14210 26.144 306 191 11 33 320 36 324 5.19e-19 87.8
MS.gene62128.t1 AT3G14220 24.786 351 213 13 12 332 7 336 5.83e-19 87.4
MS.gene62128.t1 AT1G67830 26.263 297 173 11 27 293 24 304 1.11e-18 86.7
MS.gene62128.t1 AT1G28660 26.349 315 191 12 7 293 11 312 2.17e-18 85.9
MS.gene62128.t1 AT1G54000 24.860 358 231 13 2 340 5 343 2.59e-18 85.9
MS.gene62128.t1 AT3G62280 25.301 332 211 12 22 329 25 343 8.62e-18 84.0
MS.gene62128.t1 AT1G54010 25.356 351 226 13 9 340 10 343 9.89e-18 84.0
MS.gene62128.t1 AT1G54790 27.157 313 180 11 1 284 1 294 1.58e-17 83.6
MS.gene62128.t1 AT1G09390 25.575 348 233 12 7 334 10 351 7.35e-17 81.3
MS.gene62128.t1 AT4G16220 41.497 147 79 5 29 172 26 168 2.16e-16 78.2
MS.gene62128.t1 AT1G28600 33.962 159 73 8 33 173 31 175 5.67e-15 73.6
MS.gene62128.t1 AT1G28610 34.395 157 73 8 9 149 9 151 2.22e-14 72.4
MS.gene62128.t1 AT3G62280 25.843 267 168 9 22 271 25 278 8.25e-14 71.6
MS.gene62128.t1 AT2G36325 28.782 271 166 11 34 293 48 302 1.04e-13 71.6
MS.gene62128.t1 AT1G54020 23.077 260 174 8 88 336 1 245 1.94e-13 70.5
MS.gene62128.t1 AT1G54020 23.077 260 174 8 88 336 1 245 1.94e-13 70.5
MS.gene62128.t1 AT1G54020 23.077 260 174 8 88 336 1 245 1.94e-13 70.5
MS.gene62128.t1 AT4G01130 24.561 228 141 7 90 293 1 221 7.54e-13 68.6

Find 59 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCTCTTGGTCTTGGTTT+TGG 0.167765 5.2:+40887353 None:intergenic
TAGATAGCTGGAATCTGTTT+TGG 0.244389 5.2:+40889216 None:intergenic
AGGCAAACGATTATTATAAT+AGG 0.268251 5.2:+40887301 None:intergenic
TTCTCATTGCATTCTCCTCT+TGG 0.292553 5.2:+40887341 None:intergenic
TTGCATTCTCCTCTTGGTCT+TGG 0.307495 5.2:+40887347 None:intergenic
TCCTTGTTTGTTGTCTCTAC+TGG 0.308793 5.2:-40888449 MS.gene62128:CDS
AGCCTTTGATAGTCCCAAAT+AGG 0.312893 5.2:+40888735 None:intergenic
TTTGCACAAGTAGCATTATA+AGG 0.315671 5.2:+40886919 None:intergenic
TTTATGTATCTAAGAGAAAA+TGG 0.326525 5.2:-40887209 MS.gene62128:CDS
CTTTATGCAGCTATACATCT+AGG 0.337425 5.2:-40888775 MS.gene62128:intron
GCCTTTGATAGTCCCAAATA+GGG 0.356818 5.2:+40888736 None:intergenic
AGAGAAAATGGATACAAATA+TGG 0.357641 5.2:-40887197 MS.gene62128:intron
AAGCTGCAGTCTCAACTTCC+TGG 0.375874 5.2:-40887266 MS.gene62128:CDS
AAAACGGTTGTTGATTACTT+AGG 0.412656 5.2:-40889066 MS.gene62128:intron
TTTACAACCTAGGAGCTAGA+AGG 0.419101 5.2:-40887424 MS.gene62128:CDS
CCTACTGGTCGAAACACTAA+TGG 0.422334 5.2:-40889090 MS.gene62128:CDS
GAATTTACATTGTTAGTCTC+TGG 0.436615 5.2:+40888655 None:intergenic
AATGCAATGAGAAAATAAAC+AGG 0.439873 5.2:-40887331 MS.gene62128:CDS
AATGCAAAATTTCCTCCTTA+CGG 0.447147 5.2:-40889135 MS.gene62128:CDS
CCTTACGGTATAGACTTTGA+TGG 0.462327 5.2:-40889120 MS.gene62128:CDS
ACGAATAATATTGCACCACT+TGG 0.466038 5.2:-40887395 MS.gene62128:CDS
CCCCTATTTGGGACTATCAA+AGG 0.478566 5.2:-40888737 MS.gene62128:CDS
CCATTAGTGTTTCGACCAGT+AGG 0.493015 5.2:+40889090 None:intergenic
AAGACAATATGCAAGACATC+TGG 0.499494 5.2:-40886817 MS.gene62128:CDS
CACAAGTAGCATTATAAGGA+TGG 0.506293 5.2:+40886923 None:intergenic
TTTGATGGTGGCAAACCTAC+TGG 0.506618 5.2:-40889105 MS.gene62128:CDS
TTGCAGAAACTTTACAACCT+AGG 0.521079 5.2:-40887434 MS.gene62128:intron
TAGCATTATAAGGATGGCAT+TGG 0.524122 5.2:+40886929 None:intergenic
ATGAATTTGTTGATGATGCT+AGG 0.524338 5.2:+40889244 None:intergenic
TTGCAGGGATATTAGAAACA+TGG 0.536076 5.2:-40886987 MS.gene62128:intron
CACATATACCTGCAAGCGTA+GGG 0.544177 5.2:+40888352 None:intergenic
TGAATTTGTTGATGATGCTA+GGG 0.546596 5.2:+40889245 None:intergenic
CGAATAATATTGCACCACTT+GGG 0.553546 5.2:-40887394 MS.gene62128:CDS
TTTATGCAGCTATACATCTA+GGG 0.557013 5.2:-40888774 MS.gene62128:intron
TGTTGTTACCACTGTCAACA+AGG 0.561370 5.2:+40889178 None:intergenic
TACTGGTGTGAATGACAACT+TGG 0.568068 5.2:-40888432 MS.gene62128:CDS
CAAAGAAACAAAATCACGAC+AGG 0.578596 5.2:-40888712 MS.gene62128:CDS
AAAATGTTATTTGGGCAGCA+AGG 0.581181 5.2:+40886961 None:intergenic
TTGGTTGACAGAACCTTCCG+TGG 0.584790 5.2:-40888413 MS.gene62128:CDS
TCACATATACCTGCAAGCGT+AGG 0.585902 5.2:+40888351 None:intergenic
CCTTTGATAGTCCCAAATAG+GGG 0.593291 5.2:+40888737 None:intergenic
GAATGCATAAAAGTAAAGCC+AGG 0.596360 5.2:+40887248 None:intergenic
CCATCAAAGTCTATACCGTA+AGG 0.606546 5.2:+40889120 None:intergenic
CTTTGATAGTCCCAAATAGG+GGG 0.611452 5.2:+40888738 None:intergenic
GGTGATTCCCTTGTTGACAG+TGG 0.611676 5.2:-40889186 MS.gene62128:CDS
ACGGGTGATCATCAAAGAAG+AGG 0.614167 5.2:+40886884 None:intergenic
GCAAGACATCTGGCTTCAAG+AGG 0.629659 5.2:-40886807 MS.gene62128:CDS
GTTGTTACCACTGTCAACAA+GGG 0.630881 5.2:+40889179 None:intergenic
GCTCCAAAACCAAGACCAAG+AGG 0.642238 5.2:-40887356 MS.gene62128:CDS
ACCAGTAGAGACAACAAACA+AGG 0.643226 5.2:+40888448 None:intergenic
TACGGTATAGACTTTGATGG+TGG 0.644268 5.2:-40889117 MS.gene62128:CDS
AACAGATAAAGTTATTCACA+AGG 0.645789 5.2:-40888538 MS.gene62128:CDS
TGGAAGAATGCCAGAACCAG+CGG 0.648620 5.2:+40888675 None:intergenic
TCAAAGTCTATACCGTAAGG+AGG 0.653955 5.2:+40889123 None:intergenic
ACAGATAAAGTTATTCACAA+GGG 0.673908 5.2:-40888537 MS.gene62128:CDS
AATGATGGAAAGCACCCAAG+TGG 0.696696 5.2:+40887380 None:intergenic
TTTGATAGTCCCAAATAGGG+GGG 0.697989 5.2:+40888739 None:intergenic
GAATTTGTTGATGATGCTAG+GGG 0.717789 5.2:+40889246 None:intergenic
ATGCAATGAGAAAATAAACA+GGG 0.722232 5.2:-40887330 MS.gene62128:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATATTATAAAATAAT+AGG - chr5.2:40887940-40887959 MS.gene62128:intron 0.0%
!! AAAATTAAAGTTTAAAAAGT+AGG + chr5.2:40888550-40888569 None:intergenic 10.0%
!! AGATAAATTAATAAATTAGT+AGG + chr5.2:40887138-40887157 None:intergenic 10.0%
!! ATAATTTATTTAATCAAACA+TGG - chr5.2:40888112-40888131 MS.gene62128:intron 10.0%
!! ATATTATAAAATAATAGGAA+TGG - chr5.2:40887945-40887964 MS.gene62128:intron 10.0%
!! ATGATATAATATTAAATGAT+TGG + chr5.2:40888268-40888287 None:intergenic 10.0%
!! TTATTATAAAAATTACATCA+GGG + chr5.2:40888462-40888481 None:intergenic 10.0%
!!! ATTTTTTAAAAAAATTAAGC+TGG - chr5.2:40888575-40888594 MS.gene62128:intron 10.0%
!!! TATAAATAAATTTTGGTTAT+AGG - chr5.2:40888313-40888332 MS.gene62128:intron 10.0%
!! AATTATACATAAAAAGACAT+TGG - chr5.2:40887839-40887858 MS.gene62128:intron 15.0%
!! ATACATGATTGTAAAAATTA+AGG + chr5.2:40888388-40888407 None:intergenic 15.0%
!! CTTATTATAAAAATTACATC+AGG + chr5.2:40888463-40888482 None:intergenic 15.0%
!! TAATGAATCTTATTGTAATT+CGG - chr5.2:40888082-40888101 MS.gene62128:intron 15.0%
!! TGTAAAAATTAAGGTAATTA+AGG + chr5.2:40888379-40888398 None:intergenic 15.0%
!!! TAATTTTTACAATCATGTAT+TGG - chr5.2:40888388-40888407 MS.gene62128:CDS 15.0%
!!! TTGTTCTAGAATTTTATTTT+TGG - chr5.2:40888424-40888443 MS.gene62128:CDS 15.0%
!! AAATCAGTTACTATTCAATT+CGG + chr5.2:40889088-40889107 None:intergenic 20.0%
!! ACACACTCAAATAAAATTAT+TGG + chr5.2:40888236-40888255 None:intergenic 20.0%
!! ATGGTAAGAAAAAATTCAAA+TGG - chr5.2:40888920-40888939 MS.gene62128:intron 20.0%
!! CAATAATACTTCAATTTGTA+TGG - chr5.2:40888501-40888520 MS.gene62128:CDS 20.0%
!! CTACAATAGAAAAATTTCAA+CGG + chr5.2:40888059-40888078 None:intergenic 20.0%
!! TTTATGTATCTAAGAGAAAA+TGG - chr5.2:40888889-40888908 MS.gene62128:intron 20.0%
!!! AATTTTGCATTTGATTGAAT+TGG + chr5.2:40886954-40886973 None:intergenic 20.0%
!!! ATTTTCTCTTAGATACATAA+AGG + chr5.2:40888890-40888909 None:intergenic 20.0%
!!! CTCTTTTCTCAAATTAATAT+CGG - chr5.2:40887236-40887255 MS.gene62128:CDS 20.0%
!!! GATTGTTTTATTATTTTGAC+CGG - chr5.2:40887972-40887991 MS.gene62128:intron 20.0%
!!! TAATTGCAGTTTTTGTTTTA+AGG + chr5.2:40887824-40887843 None:intergenic 20.0%
!!! TTCTTAGATAAATTCAAGTT+TGG + chr5.2:40888353-40888372 None:intergenic 20.0%
! AACAGATAAAGTTATTCACA+AGG - chr5.2:40887560-40887579 MS.gene62128:intron 25.0%
! AATCAAACATGGTAAAACTA+TGG - chr5.2:40888123-40888142 MS.gene62128:intron 25.0%
! AATGCAATGAGAAAATAAAC+AGG - chr5.2:40888767-40888786 MS.gene62128:CDS 25.0%
! ACAGATAAAGTTATTCACAA+GGG - chr5.2:40887561-40887580 MS.gene62128:intron 25.0%
! ACTCTTCAATTCAAAAATGT+AGG + chr5.2:40887473-40887492 None:intergenic 25.0%
! AGAGAAAATGGATACAAATA+TGG - chr5.2:40888901-40888920 MS.gene62128:intron 25.0%
! AGATCACCAAAAATGTTATT+TGG + chr5.2:40889149-40889168 None:intergenic 25.0%
! AGGCAAACGATTATTATAAT+AGG + chr5.2:40888800-40888819 None:intergenic 25.0%
! ATGCAATGAGAAAATAAACA+GGG - chr5.2:40888768-40888787 MS.gene62128:CDS 25.0%
! TACATATACATATGGTTTCA+TGG - chr5.2:40887866-40887885 MS.gene62128:intron 25.0%
! TCAAATAAATCTATGAAGTC+CGG + chr5.2:40887285-40887304 None:intergenic 25.0%
! TTGGAATCTACATATACATA+TGG - chr5.2:40887858-40887877 MS.gene62128:intron 25.0%
!! ATGTTAGCTCTTTAGATTTA+AGG - chr5.2:40887167-40887186 MS.gene62128:intron 25.0%
!! GATCACCAAAAATGTTATTT+GGG + chr5.2:40889148-40889167 None:intergenic 25.0%
!! GGAAAATTCTTTTAACAGAT+AGG + chr5.2:40887728-40887747 None:intergenic 25.0%
!! TTCAAGTTTGGTTAGATATA+AGG + chr5.2:40888341-40888360 None:intergenic 25.0%
!!! GAATTTTTAAAGGCTTATGT+TGG - chr5.2:40889052-40889071 MS.gene62128:intron 25.0%
!!! GTTTTAACGCAATCTAATAT+TGG - chr5.2:40888597-40888616 MS.gene62128:intron 25.0%
!!! TCTTTTTCATCAAACATATG+TGG + chr5.2:40887604-40887623 None:intergenic 25.0%
AATGCAAAATTTCCTCCTTA+CGG - chr5.2:40886963-40886982 MS.gene62128:CDS 30.0%
TCGAAACACTAATGGAAAAA+CGG - chr5.2:40887016-40887035 MS.gene62128:intron 30.0%
TGCATAAAGAACGAAATGAA+AGG + chr5.2:40887312-40887331 None:intergenic 30.0%
TTTATGCAGCTATACATCTA+GGG - chr5.2:40887324-40887343 MS.gene62128:CDS 30.0%
TTTGCACAAGTAGCATTATA+AGG + chr5.2:40889182-40889201 None:intergenic 30.0%
! AAAACGGTTGTTGATTACTT+AGG - chr5.2:40887032-40887051 MS.gene62128:intron 30.0%
! ACGTGTTGCATATATTTTGT+TGG + chr5.2:40889249-40889268 None:intergenic 30.0%
! AGTCAAAGTTTTCTGCAAAA+AGG + chr5.2:40887533-40887552 None:intergenic 30.0%
! ATGTCCATTTTCTCTGATAA+AGG - chr5.2:40888153-40888172 MS.gene62128:intron 30.0%
! ATTCCAGCTATCTATGTTTT+TGG - chr5.2:40886891-40886910 MS.gene62128:CDS 30.0%
! ATTTTGTTGGCAATTTGAGA+CGG + chr5.2:40889236-40889255 None:intergenic 30.0%
! CGTCAAATACATTTAGTTTC+CGG + chr5.2:40887994-40888013 None:intergenic 30.0%
! GAATTTACATTGTTAGTCTC+TGG + chr5.2:40887446-40887465 None:intergenic 30.0%
! GACATGAGTCGAATTTTTAA+AGG - chr5.2:40889042-40889061 MS.gene62128:intron 30.0%
!! AGTAACTGATTTTCTTTGCA+GGG - chr5.2:40889096-40889115 MS.gene62128:CDS 30.0%
!! ATGAATTTGTTGATGATGCT+AGG + chr5.2:40886857-40886876 None:intergenic 30.0%
!! TAGTAACTGATTTTCTTTGC+AGG - chr5.2:40889095-40889114 MS.gene62128:CDS 30.0%
!! TGAATTTGTTGATGATGCTA+GGG + chr5.2:40886856-40886875 None:intergenic 30.0%
!!! AACGGTGCTTTTTTTTTCAA+TGG + chr5.2:40888041-40888060 None:intergenic 30.0%
!!! AAGAAAATTTTCTAGAGCCA+CGG + chr5.2:40887705-40887724 None:intergenic 30.0%
AAGACAATATGCAAGACATC+TGG - chr5.2:40889281-40889300 MS.gene62128:CDS 35.0%
AATCTAGATGAGCCTAAGTT+GGG + chr5.2:40887911-40887930 None:intergenic 35.0%
AATGAGTTAGTGTCTCACAT+AGG - chr5.2:40887206-40887225 MS.gene62128:CDS 35.0%
ACGAATAATATTGCACCACT+TGG - chr5.2:40888703-40888722 MS.gene62128:CDS 35.0%
CAAAGAAACAAAATCACGAC+AGG - chr5.2:40887386-40887405 MS.gene62128:CDS 35.0%
CACAAGTAGCATTATAAGGA+TGG + chr5.2:40889178-40889197 None:intergenic 35.0%
CGAATAATATTGCACCACTT+GGG - chr5.2:40888704-40888723 MS.gene62128:CDS 35.0%
CTTTATGCAGCTATACATCT+AGG - chr5.2:40887323-40887342 MS.gene62128:CDS 35.0%
GAATGCATAAAAGTAAAGCC+AGG + chr5.2:40888853-40888872 None:intergenic 35.0%
TAGCATTATAAGGATGGCAT+TGG + chr5.2:40889172-40889191 None:intergenic 35.0%
TCACCAAAAACATAGATAGC+TGG + chr5.2:40886897-40886916 None:intergenic 35.0%
TTGCAGAAACTTTACAACCT+AGG - chr5.2:40888664-40888683 MS.gene62128:CDS 35.0%
TTGCAGGGATATTAGAAACA+TGG - chr5.2:40889111-40889130 MS.gene62128:CDS 35.0%
! AAAATGTTATTTGGGCAGCA+AGG + chr5.2:40889140-40889159 None:intergenic 35.0%
! AGATAGCTGGAATCTGTTTT+GGG + chr5.2:40886884-40886903 None:intergenic 35.0%
! CCATTTTCTCTGATAAAGGA+GGG - chr5.2:40888157-40888176 MS.gene62128:intron 35.0%
! TAGATAGCTGGAATCTGTTT+TGG + chr5.2:40886885-40886904 None:intergenic 35.0%
! TCCATTTTCTCTGATAAAGG+AGG - chr5.2:40888156-40888175 MS.gene62128:intron 35.0%
! TGCTGCCCAAATAACATTTT+TGG - chr5.2:40889140-40889159 MS.gene62128:CDS 35.0%
!! GAATTTGTTGATGATGCTAG+GGG + chr5.2:40886855-40886874 None:intergenic 35.0%
!! TTTTGTTGGCAATTTGAGAC+GGG + chr5.2:40889235-40889254 None:intergenic 35.0%
!!! TGCAGCTTTTGAAGTACATT+AGG + chr5.2:40888820-40888839 None:intergenic 35.0%
AAGATTCAGATCCTCTCTCA+CGG - chr5.2:40888964-40888983 MS.gene62128:intron 40.0%
ACCAGTAGAGACAACAAACA+AGG + chr5.2:40887653-40887672 None:intergenic 40.0%
ATCTAGATGAGCCTAAGTTG+GGG + chr5.2:40887910-40887929 None:intergenic 40.0%
CAATCTAGATGAGCCTAAGT+TGG + chr5.2:40887912-40887931 None:intergenic 40.0%
CCATCAAAGTCTATACCGTA+AGG + chr5.2:40886981-40887000 None:intergenic 40.0%
CCCTCCTTTATCAGAGAAAA+TGG + chr5.2:40888160-40888179 None:intergenic 40.0%
CCTTACGGTATAGACTTTGA+TGG - chr5.2:40886978-40886997 MS.gene62128:CDS 40.0%
GATATGTAGTGTCTAGTGTC+CGG - chr5.2:40887263-40887282 MS.gene62128:CDS 40.0%
GTTGTTACCACTGTCAACAA+GGG + chr5.2:40886922-40886941 None:intergenic 40.0%
TACGGTATAGACTTTGATGG+TGG - chr5.2:40886981-40887000 MS.gene62128:CDS 40.0%
TACTGGTGTGAATGACAACT+TGG - chr5.2:40887666-40887685 MS.gene62128:intron 40.0%
TAGCAAAACTTCCCCAACTT+AGG - chr5.2:40887896-40887915 MS.gene62128:intron 40.0%
TCAAAGTCTATACCGTAAGG+AGG + chr5.2:40886978-40886997 None:intergenic 40.0%
TGTTGTTACCACTGTCAACA+AGG + chr5.2:40886923-40886942 None:intergenic 40.0%
TTCTCATTGCATTCTCCTCT+TGG + chr5.2:40888760-40888779 None:intergenic 40.0%
TTTACAACCTAGGAGCTAGA+AGG - chr5.2:40888674-40888693 MS.gene62128:CDS 40.0%
! AAGGCTTATGTTGGCATTGA+CGG - chr5.2:40889061-40889080 MS.gene62128:intron 40.0%
! AGCCTTTGATAGTCCCAAAT+AGG + chr5.2:40887366-40887385 None:intergenic 40.0%
! CCTTTGATAGTCCCAAATAG+GGG + chr5.2:40887364-40887383 None:intergenic 40.0%
! CTTTGATAGTCCCAAATAGG+GGG + chr5.2:40887363-40887382 None:intergenic 40.0%
! GCCTTTGATAGTCCCAAATA+GGG + chr5.2:40887365-40887384 None:intergenic 40.0%
! TTTGATAGTCCCAAATAGGG+GGG + chr5.2:40887362-40887381 None:intergenic 40.0%
!! TCCTTGTTTGTTGTCTCTAC+TGG - chr5.2:40887649-40887668 MS.gene62128:intron 40.0%
!! TGAAAAACCTTCTAGCTCCT+AGG + chr5.2:40888684-40888703 None:intergenic 40.0%
!!! AAATTTTCTAGAGCCACGGA+AGG + chr5.2:40887701-40887720 None:intergenic 40.0%
!!! CTTGGTTTTGGAGCAAATGA+TGG + chr5.2:40888736-40888755 None:intergenic 40.0%
ACGGGTGATCATCAAAGAAG+AGG + chr5.2:40889217-40889236 None:intergenic 45.0%
CACATATACCTGCAAGCGTA+GGG + chr5.2:40887749-40887768 None:intergenic 45.0%
CCATTAGTGTTTCGACCAGT+AGG + chr5.2:40887011-40887030 None:intergenic 45.0%
CCTACTGGTCGAAACACTAA+TGG - chr5.2:40887008-40887027 MS.gene62128:intron 45.0%
TCACATATACCTGCAAGCGT+AGG + chr5.2:40887750-40887769 None:intergenic 45.0%
TTGCATTCTCCTCTTGGTCT+TGG + chr5.2:40888754-40888773 None:intergenic 45.0%
! AGAATTTTCCCTACGCTTGC+AGG - chr5.2:40887738-40887757 MS.gene62128:intron 45.0%
! CCCCTATTTGGGACTATCAA+AGG - chr5.2:40887361-40887380 MS.gene62128:CDS 45.0%
!! AATGATGGAAAGCACCCAAG+TGG + chr5.2:40888721-40888740 None:intergenic 45.0%
!! TTTGATGGTGGCAAACCTAC+TGG - chr5.2:40886993-40887012 MS.gene62128:intron 45.0%
!!! TCTCCTCTTGGTCTTGGTTT+TGG + chr5.2:40888748-40888767 None:intergenic 45.0%
!!! ATTTTATAATATTTTATCAA+TGG + chr5.2:40887937-40887956 None:intergenic 5.0%
!!! TTCAATTTATAAATAAATTT+TGG - chr5.2:40888306-40888325 MS.gene62128:intron 5.0%
AAGCTGCAGTCTCAACTTCC+TGG - chr5.2:40888832-40888851 MS.gene62128:intron 50.0%
ACCCTTTGTTCCCCCCTATT+TGG - chr5.2:40887349-40887368 MS.gene62128:CDS 50.0%
CCCAAATAGGGGGGAACAAA+GGG + chr5.2:40887353-40887372 None:intergenic 50.0%
CCCTTTGTTCCCCCCTATTT+GGG - chr5.2:40887350-40887369 MS.gene62128:CDS 50.0%
GCTCCAAAACCAAGACCAAG+AGG - chr5.2:40888742-40888761 MS.gene62128:CDS 50.0%
GGTGATTCCCTTGTTGACAG+TGG - chr5.2:40886912-40886931 MS.gene62128:CDS 50.0%
TCCCAAATAGGGGGGAACAA+AGG + chr5.2:40887354-40887373 None:intergenic 50.0%
TGGAAGAATGCCAGAACCAG+CGG + chr5.2:40887426-40887445 None:intergenic 50.0%
TTGGTTGACAGAACCTTCCG+TGG - chr5.2:40887685-40887704 MS.gene62128:intron 50.0%
! GATCCACACAGCTGCTTTGT+GGG - chr5.2:40889015-40889034 MS.gene62128:intron 50.0%
! GCAAGACATCTGGCTTCAAG+AGG - chr5.2:40889291-40889310 MS.gene62128:CDS 50.0%
! GGCATAAATTTTGCGTCCGC+TGG - chr5.2:40887407-40887426 MS.gene62128:CDS 50.0%
! TGATCCACACAGCTGCTTTG+TGG - chr5.2:40889014-40889033 MS.gene62128:intron 50.0%
!!! AATTTTGCGTCCGCTGGTTC+TGG - chr5.2:40887413-40887432 MS.gene62128:CDS 50.0%
TCTCCCACAAAGCAGCTGTG+TGG + chr5.2:40889021-40889040 None:intergenic 55.0%
! ACACAGCTGCTTTGTGGGAG+AGG - chr5.2:40889020-40889039 MS.gene62128:intron 55.0%
TTGCAGCTGCACCGTGAGAG+AGG + chr5.2:40888978-40888997 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 40886801 40889319 40886801 ID=MS.gene62128
chr5.2 mRNA 40886801 40889319 40886801 ID=MS.gene62128.t1;Parent=MS.gene62128
chr5.2 exon 40889067 40889319 40889067 ID=MS.gene62128.t1.exon1;Parent=MS.gene62128.t1
chr5.2 CDS 40889067 40889319 40889067 ID=cds.MS.gene62128.t1;Parent=MS.gene62128.t1
chr5.2 exon 40888663 40888787 40888663 ID=MS.gene62128.t1.exon2;Parent=MS.gene62128.t1
chr5.2 CDS 40888663 40888787 40888663 ID=cds.MS.gene62128.t1;Parent=MS.gene62128.t1
chr5.2 exon 40888361 40888579 40888361 ID=MS.gene62128.t1.exon3;Parent=MS.gene62128.t1
chr5.2 CDS 40888361 40888579 40888361 ID=cds.MS.gene62128.t1;Parent=MS.gene62128.t1
chr5.2 exon 40887198 40887450 40887198 ID=MS.gene62128.t1.exon4;Parent=MS.gene62128.t1
chr5.2 CDS 40887198 40887450 40887198 ID=cds.MS.gene62128.t1;Parent=MS.gene62128.t1
chr5.2 exon 40886801 40887003 40886801 ID=MS.gene62128.t1.exon5;Parent=MS.gene62128.t1
chr5.2 CDS 40886801 40887003 40886801 ID=cds.MS.gene62128.t1;Parent=MS.gene62128.t1
Gene Sequence

>MS.gene62128

ATGAATATTAATTATCTCACTTTTTCTTATGTGTTAATTACTTTGCTGTTACCCCTAGCATCATCAACAAATTCATATCACCCAAAACAGATTCCAGCTATCTATGTTTTTGGTGATTCCCTTGTTGACAGTGGTAACAACAATTATCTTCCAATTCAATCAAATGCAAAATTTCCTCCTTACGGTATAGACTTTGATGGTGGCAAACCTACTGGTCGAAACACTAATGGAAAAACGGTTGTTGATTACTTAGGTGAGAATACACTATTCACATTTTTCACTATGTCATTTCTTTGTTTCTTAAAATCATAGTTCATTATCTTAACAAATTTTTCCTACTAATTTATTAATTTATCTCTATGTAACATGTTAGCTCTTTAGATTTAAGGCGTTTCTATTGTTCGAAATGAGTTAGTGTCTCACATAGGCATCATTCTCTTTTCTCAAATTAATATCGGTATTGATATGTAGTGTCTAGTGTCCGGACTTCATAGATTTATTTGAATGACCTTTCATTTCGTTCTTTATGCAGCTATACATCTAGGGCTACCCTTTGTTCCCCCCTATTTGGGACTATCAAAGGCTCAAAGAAACAAAATCACGACAGGCATAAATTTTGCGTCCGCTGGTTCTGGCATTCTTCCAGAGACTAACAATGTAAATTCGATACCTACATTTTTGAATTGAAGAGTTCTTTATTTTTATCTTATGTTGTCATGATTTTTTTTTCCTTTTTGCAGAAAACTTTGACTCTAGACGAACAGATAAAGTTATTCACAAGGGTTATTAAGAATAACTTGCCACATATGTTTGATGAAAAAGAAAAATTAGAGAAGCATCTATCTGAATCCTTGTTTGTTGTCTCTACTGGTGTGAATGACAACTTGGTTGACAGAACCTTCCGTGGCTCTAGAAAATTTTCTTCCTATCTGTTAAAAGAATTTTCCCTACGCTTGCAGGTATATGTGACAAAATTTATTGTTTTTTTTTACTCTATAAGTATAACTGCAATTATACATTCCTTAAAACAAAAACTGCAATTATACATAAAAAGACATTGGAATCTACATATACATATGGTTTCATGGCAATGTTTAGCAAAACTTCCCCAACTTAGGCTCATCTAGATTGAACCATTGATAAAATATTATAAAATAATAGGAATGGTTATGATTGTTTTATTATTTTGACCGGAAACTAAATGTATTTGACGATAATGTAATGTATTTTGACTTTTCCATTGAAAAAAAAAGCACCGTTGAAATTTTTCTATTGTAGCTTTAATGAATCTTATTGTAATTCGGTGATGATATAATTTATTTAATCAAACATGGTAAAACTATGGACTATCAATGTCCATTTTCTCTGATAAAGGAGGGTTAATACAAAGAACAAAATATTAAAAAATAAAAGATTTTTTTGATAAACTTTTCCAATAATTTTATTTGAGTGTGTATGCATCATCCAATCATTTAATATTATATCATATTTTTATTTTAAAATAATTCAATTTATAAATAAATTTTGGTTATAGGATCCTTATATCTAACCAAACTTGAATTTATCTAAGAATTACCTTAATTACCTTAATTTTTACAATCATGTATTGGTTTCACACTTAATTTGTTCTAGAATTTTATTTTTGGATTTTAATAACTCCCTGATGTAATTTTTATAATAAGCTGAGATAATAAAAATTTCAATAATACTTCAATTTGTATGGACTACTTGCACTAAAAACACTCTCCTACTTTTTAAACTTTAATTTTAATTTATTTTTTAAAAAAATTAAGCTGGTTTTAACGCAATCTAATATTGGAGCAAATGAAATTTCTTTCAATTGTGCAATCAATCATTTGCTTATTGCAGAAACTTTACAACCTAGGAGCTAGAAGGTTTTTCACGAATAATATTGCACCACTTGGGTGCTTTCCATCATTTGCTCCAAAACCAAGACCAAGAGGAGAATGCAATGAGAAAATAAACAGGGCAATTTCCTATTATAATAATCGTTTGCCTAATGTACTTCAAAAGCTGCAGTCTCAACTTCCTGGCTTTACTTTTATGCATTCAGATCTTTATGAGTCCTTTATGTATCTAAGAGAAAATGGATACAAATATGGTAAGAAAAAATTCAAATGGTTATTCAATGTTTGATTTAACAAGATTCAGATCCTCTCTCACGGTGCAGCTGCAACAATTTTTTAACTAGTTGATCCACACAGCTGCTTTGTGGGAGAGGACATGAGTCGAATTTTTAAAGGCTTATGTTGGCATTGACGGACCGAATTGAATAGTAACTGATTTTCTTTGCAGGGATATTAGAAACATGGAAACCTTGCTGCCCAAATAACATTTTTGGTGATCTCCAATGCCATCCTTATAATGCTACTTGTGCAAACAGAAACACTCACCTCTTCTTTGATGATCACCCGTCTCAAATTGCCAACAAAATATATGCAACACGTTGCTTCATTGAGAAGACAATATGCAAGACATCTGGCTTCAAGAGGCTCTAA
Protein sequence

>MS.gene62128.t1

MNINYLTFSYVLITLLLPLASSTNSYHPKQIPAIYVFGDSLVDSGNNNYLPIQSNAKFPPYGIDFDGGKPTGRNTNGKTVVDYLAIHLGLPFVPPYLGLSKAQRNKITTGINFASAGSGILPETNNKTLTLDEQIKLFTRVIKNNLPHMFDEKEKLEKHLSESLFVVSTGVNDNLVDRTFRGSRKFSSYLLKEFSLRLQKLYNLGARRFFTNNIAPLGCFPSFAPKPRPRGECNEKINRAISYYNNRLPNVLQKLQSQLPGFTFMHSDLYESFMYLRENGYKYGILETWKPCCPNNIFGDLQCHPYNATCANRNTHLFFDDHPSQIANKIYATRCFIEKTICKTSGFKRL