Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62173.t1 | AES71012.1 | 96.7 | 361 | 12 | 0 | 1 | 361 | 1 | 361 | 4.70E-190 | 673.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62173.t1 | O22287 | 90.3 | 361 | 35 | 0 | 1 | 361 | 1 | 361 | 1.0e-177 | 624.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62173.t1 | G7J9Y8 | 96.7 | 361 | 12 | 0 | 1 | 361 | 1 | 361 | 3.4e-190 | 673.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene70588 | MS.gene62173 | PPI |
| MS.gene25915 | MS.gene62173 | PPI |
| MS.gene074391 | MS.gene62173 | PPI |
| MS.gene62173 | MS.gene07262 | PPI |
| MS.gene62173 | MS.gene20834 | PPI |
| MS.gene62173 | MS.gene022258 | PPI |
| MS.gene20783 | MS.gene62173 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62173.t1 | MTR_3g069070 | 99.169 | 361 | 3 | 0 | 1 | 361 | 1 | 361 | 0.0 | 728 |
| MS.gene62173.t1 | MTR_5g080770 | 93.075 | 361 | 25 | 0 | 1 | 361 | 1 | 361 | 0.0 | 686 |
| MS.gene62173.t1 | MTR_3g069070 | 99.007 | 302 | 3 | 0 | 60 | 361 | 1 | 302 | 0.0 | 612 |
| MS.gene62173.t1 | MTR_4g133690 | 72.853 | 361 | 41 | 3 | 1 | 361 | 1 | 304 | 0.0 | 504 |
| MS.gene62173.t1 | MTR_3g078570 | 32.250 | 400 | 223 | 7 | 3 | 354 | 10 | 409 | 6.91e-64 | 209 |
| MS.gene62173.t1 | MTR_6g008840 | 32.432 | 407 | 226 | 8 | 3 | 361 | 9 | 414 | 7.82e-63 | 206 |
| MS.gene62173.t1 | MTR_3g078570 | 31.755 | 359 | 206 | 6 | 3 | 322 | 10 | 368 | 5.05e-57 | 190 |
| MS.gene62173.t1 | MTR_4g071670 | 31.034 | 232 | 108 | 6 | 168 | 361 | 3 | 220 | 6.29e-26 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62173.t1 | AT2G39770 | 90.859 | 361 | 33 | 0 | 1 | 361 | 1 | 361 | 0.0 | 679 |
| MS.gene62173.t1 | AT2G39770 | 90.859 | 361 | 33 | 0 | 1 | 361 | 1 | 361 | 0.0 | 679 |
| MS.gene62173.t1 | AT2G39770 | 90.859 | 361 | 33 | 0 | 1 | 361 | 1 | 361 | 0.0 | 679 |
| MS.gene62173.t1 | AT3G55590 | 83.516 | 364 | 57 | 1 | 1 | 361 | 1 | 364 | 0.0 | 627 |
| MS.gene62173.t1 | AT4G30570 | 76.596 | 329 | 76 | 1 | 21 | 348 | 1 | 329 | 0.0 | 517 |
| MS.gene62173.t1 | AT2G04650 | 32.570 | 393 | 224 | 7 | 3 | 354 | 8 | 400 | 1.23e-65 | 213 |
| MS.gene62173.t1 | AT2G04650 | 32.208 | 385 | 222 | 6 | 9 | 354 | 4 | 388 | 3.89e-65 | 212 |
| MS.gene62173.t1 | AT1G74910 | 31.034 | 406 | 232 | 8 | 3 | 361 | 11 | 415 | 4.66e-65 | 212 |
| MS.gene62173.t1 | AT1G74910 | 31.034 | 406 | 232 | 8 | 3 | 361 | 11 | 415 | 4.66e-65 | 212 |
| MS.gene62173.t1 | AT1G74910 | 30.411 | 365 | 216 | 6 | 3 | 329 | 11 | 375 | 3.25e-58 | 194 |
Find 107 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCAGTGGCCCTCACATTT+TGG | 0.174139 | 3.2:+63022941 | MS.gene62173:CDS |
| GAGACATCCCTCGCCAATTT+TGG | 0.195747 | 3.2:-63022988 | None:intergenic |
| CAATGGTTCTGCCTGGATTC+TGG | 0.230745 | 3.2:+63022835 | MS.gene62173:CDS |
| TTGATTCTGGTTGGAGGGTT+TGG | 0.231295 | 3.2:+63021111 | MS.gene62173:CDS |
| CACAATGAAGGCATTGATTC+TGG | 0.244864 | 3.2:+63021098 | None:intergenic |
| CCTATTGAACCCCTCAGTTT+TGG | 0.269147 | 3.2:+63022737 | MS.gene62173:CDS |
| AATTACCTTTGTCACCATTA+TGG | 0.298623 | 3.2:-63022523 | None:intergenic |
| GTGCATGAGACAGCCAAAAT+TGG | 0.360392 | 3.2:+63022975 | MS.gene62173:CDS |
| GTTGACGAGCCATCGAAATA+TGG | 0.375253 | 3.2:+63022621 | MS.gene62173:CDS |
| TTTGCAGATAGAGGCTCTTA+AGG | 0.376635 | 3.2:+63022126 | MS.gene62173:intron |
| GGCATTCAACTGTTGGTCAA+TGG | 0.378871 | 3.2:+63023138 | MS.gene62173:CDS |
| GCATTCAACTGTTGGTCAAT+GGG | 0.390410 | 3.2:+63023139 | MS.gene62173:CDS |
| CTTCTCCTCCATGAGATTTG+TGG | 0.394590 | 3.2:-63022497 | None:intergenic |
| GAAATATGGTGTAGTTGTTA+TGG | 0.396468 | 3.2:+63022635 | MS.gene62173:CDS |
| CCAAAACTGAGGGGTTCAAT+AGG | 0.416025 | 3.2:-63022737 | None:intergenic |
| CTCTCAAGAAACTGAACCAT+TGG | 0.424571 | 3.2:+63022356 | MS.gene62173:CDS |
| AGCAAAATCAACAAGAGGCT+TGG | 0.428162 | 3.2:-63021166 | None:intergenic |
| ATTGGACCTGATGTTGCAAT+TGG | 0.435688 | 3.2:+63023011 | MS.gene62173:CDS |
| CAAGCCCATGATTCTGCATC+AGG | 0.436008 | 3.2:+63021191 | MS.gene62173:CDS |
| ATTGGGGACTGCAGGTCCCT+TGG | 0.442280 | 3.2:+63022374 | MS.gene62173:CDS |
| CCCCAAAATGTGAGGGCCAC+TGG | 0.444498 | 3.2:-63022943 | None:intergenic |
| GAATTTCTTGAAGGACTTTG+AGG | 0.444711 | 3.2:+63022308 | MS.gene62173:CDS |
| CCTGATGTTGCAATTGGTCC+TGG | 0.445714 | 3.2:+63023017 | MS.gene62173:CDS |
| CAGCCAAGGGACTATATAAC+AGG | 0.445775 | 3.2:+63022870 | MS.gene62173:CDS |
| GCCAGAGATAAGCTGATTGA+TGG | 0.448757 | 3.2:+63022402 | MS.gene62173:CDS |
| GTGAGGGCCACTGGCCAACT+TGG | 0.453022 | 3.2:-63022934 | None:intergenic |
| TAGCCTCACATGACTATCTC+TGG | 0.457298 | 3.2:-63023275 | None:intergenic |
| GTTGGCAACAAAATCAATGC+TGG | 0.457593 | 3.2:+63022708 | MS.gene62173:CDS |
| GCAAAATCAACAAGAGGCTT+GGG | 0.462216 | 3.2:-63021165 | None:intergenic |
| GTACTATTGAGTCAGGTGTC+AGG | 0.462789 | 3.2:+63023042 | MS.gene62173:CDS |
| CCTTACCTGATGCAGAATCA+TGG | 0.467053 | 3.2:-63021196 | None:intergenic |
| TCTCAAGAAACTGAACCATT+GGG | 0.467960 | 3.2:+63022357 | MS.gene62173:CDS |
| TTTGTTGCCAACAAACAACT+TGG | 0.477074 | 3.2:-63022697 | None:intergenic |
| ATTGGCGAGGGATGTCTCAT+TGG | 0.477910 | 3.2:+63022993 | MS.gene62173:CDS |
| AATTCTATCATTTCTTTGAG+TGG | 0.484489 | 3.2:-63022474 | None:intergenic |
| GGTGATGTTGAATTTCTTGA+AGG | 0.486495 | 3.2:+63022299 | MS.gene62173:intron |
| GCCATCAATCAGCTTATCTC+TGG | 0.487352 | 3.2:-63022403 | None:intergenic |
| GAGAAACCCAAGTTGTTTGT+TGG | 0.488405 | 3.2:+63022690 | MS.gene62173:CDS |
| TGCATATCCAGCAGCATCAT+CGG | 0.488487 | 3.2:+63023113 | MS.gene62173:CDS |
| CCTGGCTGTACTATTGAGTC+AGG | 0.491456 | 3.2:+63023035 | MS.gene62173:CDS |
| TTGGGAACGCTGAGTGTCAA+TGG | 0.493354 | 3.2:-63021147 | None:intergenic |
| ACCCACTTCTATTGAGAAAG+AGG | 0.506248 | 3.2:+63022776 | MS.gene62173:CDS |
| TGGAGGAGAAGCTTCCATAA+TGG | 0.508219 | 3.2:+63022509 | MS.gene62173:CDS |
| GCATATCCAGCAGCATCATC+GGG | 0.514239 | 3.2:+63023114 | MS.gene62173:CDS |
| TGGTTGGAGGGTTTGGAACA+AGG | 0.517924 | 3.2:+63021118 | MS.gene62173:CDS |
| GAGGGTTTGGAACAAGGTTG+AGG | 0.519056 | 3.2:+63021124 | MS.gene62173:CDS |
| ATGAAGGCATTGATTCTGGT+TGG | 0.520723 | 3.2:+63021102 | MS.gene62173:CDS |
| GAAGAAGACTTCTTCCAAGT+TGG | 0.520882 | 3.2:+63022920 | MS.gene62173:CDS |
| ATCGGGTGGCATTCAACTGT+TGG | 0.522221 | 3.2:+63023131 | MS.gene62173:CDS |
| CCTGGATTCTGGATGGACAT+TGG | 0.522294 | 3.2:+63022846 | MS.gene62173:CDS |
| ATAGAATTCCACAAATCTCA+TGG | 0.522477 | 3.2:+63022489 | MS.gene62173:CDS |
| CTATATGCAATGGTTCTGCC+TGG | 0.525369 | 3.2:+63022828 | MS.gene62173:CDS |
| AACAGGTCTGAGACTCTACC+TGG | 0.527965 | 3.2:+63022887 | MS.gene62173:CDS |
| CCAATGTCCATCCAGAATCC+AGG | 0.528298 | 3.2:-63022846 | None:intergenic |
| CCAGGACCAATTGCAACATC+AGG | 0.528530 | 3.2:-63023017 | None:intergenic |
| AACAAATTTCTCAACCTGCC+CGG | 0.528886 | 3.2:-63022667 | None:intergenic |
| ACTGAACCATTGGGGACTGC+AGG | 0.534135 | 3.2:+63022366 | MS.gene62173:CDS |
| AGACCTGTTATATAGTCCCT+TGG | 0.537146 | 3.2:-63022873 | None:intergenic |
| CTTATCTCTGGCAAGAGCCA+AGG | 0.538273 | 3.2:-63022391 | None:intergenic |
| ATGCCACCCGATGATGCTGC+TGG | 0.538528 | 3.2:-63023120 | None:intergenic |
| TGGAGTTACTGAAGTGGTGC+TGG | 0.539605 | 3.2:+63022153 | MS.gene62173:CDS |
| GCACTGTAATGAGAGGAGTT+CGG | 0.540270 | 3.2:+63023075 | MS.gene62173:CDS |
| CACCTCTTTCTCAATAGAAG+TGG | 0.543517 | 3.2:-63022778 | None:intergenic |
| TGTTGGTCAATGGGCTCGCG+TGG | 0.545394 | 3.2:+63023148 | MS.gene62173:CDS |
| AGGCATTGATTCTGGTTGGA+GGG | 0.546975 | 3.2:+63021106 | MS.gene62173:CDS |
| AAGGCATTGATTCTGGTTGG+AGG | 0.548820 | 3.2:+63021105 | MS.gene62173:CDS |
| TTGGCAACAAAATCAATGCT+GGG | 0.556088 | 3.2:+63022709 | MS.gene62173:CDS |
| GTGGAGAATATGACTATCCT+TGG | 0.561456 | 3.2:+63023167 | MS.gene62173:CDS |
| ATAGAGGCTCTTAAGGACAT+TGG | 0.566425 | 3.2:+63022133 | MS.gene62173:CDS |
| TCTTCTTCCTGAGTGAGTCC+AGG | 0.570610 | 3.2:-63022905 | None:intergenic |
| TTATCTCTGGCAAGAGCCAA+GGG | 0.571035 | 3.2:-63022390 | None:intergenic |
| TCAATATGATCCAAAACTGA+GGG | 0.571408 | 3.2:-63022747 | None:intergenic |
| GACTCTACCTGGACTCACTC+AGG | 0.571470 | 3.2:+63022898 | MS.gene62173:CDS |
| CTTACCTGATGCAGAATCAT+GGG | 0.572676 | 3.2:-63021195 | None:intergenic |
| ACCTCTTTCTCAATAGAAGT+GGG | 0.579545 | 3.2:-63022777 | None:intergenic |
| TATGGAAGAGACTACCGGGC+AGG | 0.580495 | 3.2:+63022653 | MS.gene62173:CDS |
| TTGTTGCCAACAAACAACTT+GGG | 0.582555 | 3.2:-63022696 | None:intergenic |
| GGTTCTGCCTGGATTCTGGA+TGG | 0.583086 | 3.2:+63022839 | MS.gene62173:CDS |
| ATCACATTCCCCAAAATGTG+AGG | 0.586656 | 3.2:-63022951 | None:intergenic |
| AGCTTCCATAATGGTGACAA+AGG | 0.594491 | 3.2:+63022518 | MS.gene62173:CDS |
| GGATGGACATTGGACAGCCA+AGG | 0.596026 | 3.2:+63022856 | MS.gene62173:CDS |
| TTCAATATGATCCAAAACTG+AGG | 0.607441 | 3.2:-63022748 | None:intergenic |
| GATGGACATTGGACAGCCAA+GGG | 0.607762 | 3.2:+63022857 | MS.gene62173:CDS |
| TCAAGTTGCACTGTAATGAG+AGG | 0.608923 | 3.2:+63023068 | MS.gene62173:CDS |
| AAGGGACCTGCAGTCCCCAA+TGG | 0.610136 | 3.2:-63022372 | None:intergenic |
| ACTTCTTCCAAGTTGGCCAG+TGG | 0.612092 | 3.2:+63022927 | MS.gene62173:CDS |
| GTTGTTATGGAAGAGACTAC+CGG | 0.612863 | 3.2:+63022648 | MS.gene62173:CDS |
| ACAACTACACCATATTTCGA+TGG | 0.616973 | 3.2:-63022630 | None:intergenic |
| TTGTTAGCAAAATCAACAAG+AGG | 0.621493 | 3.2:-63021171 | None:intergenic |
| TGAGACAGCCAAAATTGGCG+AGG | 0.624566 | 3.2:+63022980 | MS.gene62173:CDS |
| GCACAATCCATACCTCTGGT+TGG | 0.626350 | 3.2:-63022186 | None:intergenic |
| CCTGACTCAATAGTACAGCC+AGG | 0.628206 | 3.2:-63023035 | None:intergenic |
| ATACATGGACATCTTCTCCA+AGG | 0.629569 | 3.2:-63023184 | None:intergenic |
| CTCAAGAAACTGAACCATTG+GGG | 0.633701 | 3.2:+63022358 | MS.gene62173:CDS |
| TGTAAACTTCATCAGATACA+TGG | 0.633717 | 3.2:-63023199 | None:intergenic |
| TTGTTATGGAAGAGACTACC+GGG | 0.634181 | 3.2:+63022649 | MS.gene62173:CDS |
| TCTGATGAAGTTTACAGCAA+TGG | 0.634276 | 3.2:+63023206 | MS.gene62173:CDS |
| GAGACAGCCAAAATTGGCGA+GGG | 0.639601 | 3.2:+63022981 | MS.gene62173:CDS |
| GGACATTGGAGTTACTGAAG+TGG | 0.642199 | 3.2:+63022147 | MS.gene62173:CDS |
| TCACATTCCCCAAAATGTGA+GGG | 0.643108 | 3.2:-63022950 | None:intergenic |
| AGTTTACAGCAATGGTGGTG+TGG | 0.665559 | 3.2:+63023214 | MS.gene62173:CDS |
| GGCTATCAATTACCAACCAG+AGG | 0.681698 | 3.2:+63022174 | MS.gene62173:CDS |
| GATGAAGTTTACAGCAATGG+TGG | 0.691163 | 3.2:+63023209 | MS.gene62173:CDS |
| TATCCAGCAGCATCATCGGG+TGG | 0.692094 | 3.2:+63023117 | MS.gene62173:CDS |
| AATCCAGAGATAGTCATGTG+AGG | 0.703190 | 3.2:+63023272 | MS.gene62173:CDS |
| CAATATGATCCAAAACTGAG+GGG | 0.719526 | 3.2:-63022746 | None:intergenic |
| GAATTCCACAAATCTCATGG+AGG | 0.748000 | 3.2:+63022492 | MS.gene62173:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATACTTTGACATACTAAAA+TGG | - | chr3.2:63021525-63021544 | None:intergenic | 20.0% |
| !! | TATCTGCAAAACAAATTAAA+AGG | - | chr3.2:63022116-63022135 | None:intergenic | 20.0% |
| !!! | AAATCAACTTGTTGAAATTT+GGG | - | chr3.2:63021777-63021796 | None:intergenic | 20.0% |
| !!! | TAAATCAACTTGTTGAAATT+TGG | - | chr3.2:63021778-63021797 | None:intergenic | 20.0% |
| ! | AAACAAAAAGCTATATGCAA+TGG | + | chr3.2:63022818-63022837 | MS.gene62173:CDS | 25.0% |
| ! | AATTCAAGAAACTCAAGAAA+CGG | - | chr3.2:63021233-63021252 | None:intergenic | 25.0% |
| ! | AATTCTATCATTTCTTTGAG+TGG | - | chr3.2:63022477-63022496 | None:intergenic | 25.0% |
| ! | AGGGAGAAAATATAACATAT+AGG | - | chr3.2:63021310-63021329 | None:intergenic | 25.0% |
| ! | ATTAAAAGGAAAAACACATG+AGG | - | chr3.2:63022102-63022121 | None:intergenic | 25.0% |
| !! | ACAATTTTTCATATCCAACA+AGG | + | chr3.2:63021444-63021463 | MS.gene62173:intron | 25.0% |
| !!! | AATCAACTTGTTGAAATTTG+GGG | - | chr3.2:63021776-63021795 | None:intergenic | 25.0% |
| !!! | GTTTTAGGTTAATATAGTGT+GGG | + | chr3.2:63021835-63021854 | MS.gene62173:intron | 25.0% |
| !!! | TGTTTTAGGTTAATATAGTG+TGG | + | chr3.2:63021834-63021853 | MS.gene62173:intron | 25.0% |
| !!! | TTAATTTGTTTTGCAGATAG+AGG | + | chr3.2:63022117-63022136 | MS.gene62173:intron | 25.0% |
| AACCTAAAACACGTTAATGA+TGG | - | chr3.2:63021825-63021844 | None:intergenic | 30.0% | |
| AATTACCTTTGTCACCATTA+TGG | - | chr3.2:63022526-63022545 | None:intergenic | 30.0% | |
| ATAGAATTCCACAAATCTCA+TGG | + | chr3.2:63022489-63022508 | MS.gene62173:CDS | 30.0% | |
| ATGGTGACAAAGGTAATTAA+CGG | + | chr3.2:63022528-63022547 | MS.gene62173:intron | 30.0% | |
| ATTCAAGAAACTCAAGAAAC+GGG | - | chr3.2:63021232-63021251 | None:intergenic | 30.0% | |
| CTTGAGAAGAGTTTATAAAG+AGG | + | chr3.2:63021705-63021724 | MS.gene62173:intron | 30.0% | |
| GAAATATGGTGTAGTTGTTA+TGG | + | chr3.2:63022635-63022654 | MS.gene62173:CDS | 30.0% | |
| TCAATATGATCCAAAACTGA+GGG | - | chr3.2:63022750-63022769 | None:intergenic | 30.0% | |
| TGGATATGAAAAATTGTTGC+AGG | - | chr3.2:63021441-63021460 | None:intergenic | 30.0% | |
| TGTAAACTTCATCAGATACA+TGG | - | chr3.2:63023202-63023221 | None:intergenic | 30.0% | |
| TTCAATATGATCCAAAACTG+AGG | - | chr3.2:63022751-63022770 | None:intergenic | 30.0% | |
| TTGTTAGCAAAATCAACAAG+AGG | - | chr3.2:63021174-63021193 | None:intergenic | 30.0% | |
| ! | ATTTTCTGAATGAGTTGTGT+TGG | + | chr3.2:63021546-63021565 | MS.gene62173:intron | 30.0% |
| !! | ACAATTTTTCGCACTTTTTG+AGG | - | chr3.2:63021898-63021917 | None:intergenic | 30.0% |
| !! | TTTTTGTTTGCTGCAATCTT+TGG | - | chr3.2:63022807-63022826 | None:intergenic | 30.0% |
| AATTCAACATCACCTACAAG+AGG | - | chr3.2:63022293-63022312 | None:intergenic | 35.0% | |
| ACAACTACACCATATTTCGA+TGG | - | chr3.2:63022633-63022652 | None:intergenic | 35.0% | |
| ACCTCTTTCTCAATAGAAGT+GGG | - | chr3.2:63022780-63022799 | None:intergenic | 35.0% | |
| CAATATGATCCAAAACTGAG+GGG | - | chr3.2:63022749-63022768 | None:intergenic | 35.0% | |
| CTAAAACACGTTAATGATGG+AGG | - | chr3.2:63021822-63021841 | None:intergenic | 35.0% | |
| GAATTTCTTGAAGGACTTTG+AGG | + | chr3.2:63022308-63022327 | MS.gene62173:CDS | 35.0% | |
| GAGAAGAGTTTATAAAGAGG+AGG | + | chr3.2:63021708-63021727 | MS.gene62173:intron | 35.0% | |
| GCAAGATATTTCAGCAGAAT+GGG | + | chr3.2:63021384-63021403 | MS.gene62173:intron | 35.0% | |
| GGTGATGTTGAATTTCTTGA+AGG | + | chr3.2:63022299-63022318 | MS.gene62173:intron | 35.0% | |
| TCGCTGTTGAGAACAAAAAA+TGG | - | chr3.2:63022438-63022457 | None:intergenic | 35.0% | |
| TCTCAAGAAACTGAACCATT+GGG | + | chr3.2:63022357-63022376 | MS.gene62173:CDS | 35.0% | |
| TCTGATGAAGTTTACAGCAA+TGG | + | chr3.2:63023206-63023225 | MS.gene62173:CDS | 35.0% | |
| TGCAAGATATTTCAGCAGAA+TGG | + | chr3.2:63021383-63021402 | MS.gene62173:intron | 35.0% | |
| TTCAAGAAACTCAAGAAACG+GGG | - | chr3.2:63021231-63021250 | None:intergenic | 35.0% | |
| TTCATTGAGAATGACTGACA+CGG | - | chr3.2:63022226-63022245 | None:intergenic | 35.0% | |
| TTGGCAACAAAATCAATGCT+GGG | + | chr3.2:63022709-63022728 | MS.gene62173:CDS | 35.0% | |
| TTGTTGCCAACAAACAACTT+GGG | - | chr3.2:63022699-63022718 | None:intergenic | 35.0% | |
| TTTGTTGCCAACAAACAACT+TGG | - | chr3.2:63022700-63022719 | None:intergenic | 35.0% | |
| ! | CTCCATCATTAACGTGTTTT+AGG | + | chr3.2:63021820-63021839 | MS.gene62173:intron | 35.0% |
| !! | TTTCGCACTTTTTGAGGAAA+GGG | - | chr3.2:63021892-63021911 | None:intergenic | 35.0% |
| !! | TTTTCGCACTTTTTGAGGAA+AGG | - | chr3.2:63021893-63021912 | None:intergenic | 35.0% |
| !!! | CTTGTTTTGATTTCCTTGTG+GGG | - | chr3.2:63023245-63023264 | None:intergenic | 35.0% |
| !!! | GCTTGTTTTGATTTCCTTGT+GGG | - | chr3.2:63023246-63023265 | None:intergenic | 35.0% |
| !!! | TGCTTGTTTTGATTTCCTTG+TGG | - | chr3.2:63023247-63023266 | None:intergenic | 35.0% |
| AAACCATCTCTGATTTACCC+AGG | - | chr3.2:63021274-63021293 | None:intergenic | 40.0% | |
| AACAAATTTCTCAACCTGCC+CGG | - | chr3.2:63022670-63022689 | None:intergenic | 40.0% | |
| AATCCAGCAAGATTCAACGT+TGG | - | chr3.2:63021476-63021495 | None:intergenic | 40.0% | |
| ACCCACTTCTATTGAGAAAG+AGG | + | chr3.2:63022776-63022795 | MS.gene62173:CDS | 40.0% | |
| AGACCTGTTATATAGTCCCT+TGG | - | chr3.2:63022876-63022895 | None:intergenic | 40.0% | |
| AGCAAAATCAACAAGAGGCT+TGG | - | chr3.2:63021169-63021188 | None:intergenic | 40.0% | |
| AGCTTCCATAATGGTGACAA+AGG | + | chr3.2:63022518-63022537 | MS.gene62173:CDS | 40.0% | |
| AGGAAAAACACATGAGGTGA+TGG | - | chr3.2:63022096-63022115 | None:intergenic | 40.0% | |
| ATACATGGACATCTTCTCCA+AGG | - | chr3.2:63023187-63023206 | None:intergenic | 40.0% | |
| ATAGAGGCTCTTAAGGACAT+TGG | + | chr3.2:63022133-63022152 | MS.gene62173:CDS | 40.0% | |
| ATCACATTCCCCAAAATGTG+AGG | - | chr3.2:63022954-63022973 | None:intergenic | 40.0% | |
| ATCTACTCACAGACAGCAAA+GGG | - | chr3.2:63022006-63022025 | None:intergenic | 40.0% | |
| ATTGGACCTGATGTTGCAAT+TGG | + | chr3.2:63023011-63023030 | MS.gene62173:CDS | 40.0% | |
| CACCTCTTTCTCAATAGAAG+TGG | - | chr3.2:63022781-63022800 | None:intergenic | 40.0% | |
| CTAACCAAAGGTCGCAATTT+AGG | - | chr3.2:63021606-63021625 | None:intergenic | 40.0% | |
| CTAACTCATCCTCACAAAAC+CGG | - | chr3.2:63021752-63021771 | None:intergenic | 40.0% | |
| CTCAAGAAACTGAACCATTG+GGG | + | chr3.2:63022358-63022377 | MS.gene62173:CDS | 40.0% | |
| CTCTCAAGAAACTGAACCAT+TGG | + | chr3.2:63022356-63022375 | MS.gene62173:CDS | 40.0% | |
| CTTACCTGATGCAGAATCAT+GGG | - | chr3.2:63021198-63021217 | None:intergenic | 40.0% | |
| GAAGAAGACTTCTTCCAAGT+TGG | + | chr3.2:63022920-63022939 | MS.gene62173:CDS | 40.0% | |
| GAATTCCACAAATCTCATGG+AGG | + | chr3.2:63022492-63022511 | MS.gene62173:CDS | 40.0% | |
| GAGAAACCCAAGTTGTTTGT+TGG | + | chr3.2:63022690-63022709 | MS.gene62173:CDS | 40.0% | |
| GAGTACTATCTATCCGATGT+GGG | - | chr3.2:63021686-63021705 | None:intergenic | 40.0% | |
| GATGAAGTTTACAGCAATGG+TGG | + | chr3.2:63023209-63023228 | MS.gene62173:CDS | 40.0% | |
| GCAAAATCAACAAGAGGCTT+GGG | - | chr3.2:63021168-63021187 | None:intergenic | 40.0% | |
| GCATTCAACTGTTGGTCAAT+GGG | + | chr3.2:63023139-63023158 | MS.gene62173:CDS | 40.0% | |
| GTGGAGAATATGACTATCCT+TGG | + | chr3.2:63023167-63023186 | MS.gene62173:CDS | 40.0% | |
| GTTGGCAACAAAATCAATGC+TGG | + | chr3.2:63022708-63022727 | MS.gene62173:CDS | 40.0% | |
| GTTGTTATGGAAGAGACTAC+CGG | + | chr3.2:63022648-63022667 | MS.gene62173:CDS | 40.0% | |
| TCAATTACCAACCAGAGGTA+TGG | + | chr3.2:63022179-63022198 | MS.gene62173:intron | 40.0% | |
| TCACATTCCCCAAAATGTGA+GGG | - | chr3.2:63022953-63022972 | None:intergenic | 40.0% | |
| TCTCAAAGCCAACACAATGA+AGG | - | chr3.2:63021650-63021669 | None:intergenic | 40.0% | |
| TGGAAATTCCGCCTTAATTG+CGG | + | chr3.2:63021566-63021585 | MS.gene62173:intron | 40.0% | |
| TTACGATTGCTATGCTACCT+GGG | + | chr3.2:63021254-63021273 | MS.gene62173:intron | 40.0% | |
| TTGTGAACACTTCCTCTTGT+AGG | + | chr3.2:63022278-63022297 | MS.gene62173:intron | 40.0% | |
| TTGTTATGGAAGAGACTACC+GGG | + | chr3.2:63022649-63022668 | MS.gene62173:CDS | 40.0% | |
| TTTGCAGATAGAGGCTCTTA+AGG | + | chr3.2:63022126-63022145 | MS.gene62173:intron | 40.0% | |
| ! | AGAGTACTATCTATCCGATG+TGG | - | chr3.2:63021687-63021706 | None:intergenic | 40.0% |
| ! | CTGACTGACTCATGATATCA+GGG | - | chr3.2:63021329-63021348 | None:intergenic | 40.0% |
| ! | TCAAGTTGCACTGTAATGAG+AGG | + | chr3.2:63023068-63023087 | MS.gene62173:CDS | 40.0% |
| ! | TCTGACTGACTCATGATATC+AGG | - | chr3.2:63021330-63021349 | None:intergenic | 40.0% |
| ! | TGTTTTACATCTGCTTGTGC+AGG | + | chr3.2:63022599-63022618 | MS.gene62173:intron | 40.0% |
| !! | ATGAAGGCATTGATTCTGGT+TGG | + | chr3.2:63021102-63021121 | MS.gene62173:CDS | 40.0% |
| !! | TCATTGTGTTGGCTTTGAGA+GGG | + | chr3.2:63021650-63021669 | MS.gene62173:intron | 40.0% |
| !! | TTCATTGTGTTGGCTTTGAG+AGG | + | chr3.2:63021649-63021668 | MS.gene62173:intron | 40.0% |
| !! | TTCGCACTTTTTGAGGAAAG+GGG | - | chr3.2:63021891-63021910 | None:intergenic | 40.0% |
| CAACCAACGTTGAATCTTGC+TGG | + | chr3.2:63021470-63021489 | MS.gene62173:intron | 45.0% | |
| CAGCCAAGGGACTATATAAC+AGG | + | chr3.2:63022870-63022889 | MS.gene62173:CDS | 45.0% | |
| CATCTACTCACAGACAGCAA+AGG | - | chr3.2:63022007-63022026 | None:intergenic | 45.0% | |
| CCAAAACTGAGGGGTTCAAT+AGG | - | chr3.2:63022740-63022759 | None:intergenic | 45.0% | |
| CCATGATTCTGCATCAGGTA+AGG | + | chr3.2:63021196-63021215 | MS.gene62173:intron | 45.0% | |
| CCTTACCTGATGCAGAATCA+TGG | - | chr3.2:63021199-63021218 | None:intergenic | 45.0% | |
| CTACCTGGGTAAATCAGAGA+TGG | + | chr3.2:63021268-63021287 | MS.gene62173:intron | 45.0% | |
| CTCCAACACCTTCATTGTGT+TGG | + | chr3.2:63021639-63021658 | MS.gene62173:intron | 45.0% | |
| CTGCAATGAAGGCTAACCAA+AGG | - | chr3.2:63021618-63021637 | None:intergenic | 45.0% | |
| CTTACGATTGCTATGCTACC+TGG | + | chr3.2:63021253-63021272 | MS.gene62173:intron | 45.0% | |
| CTTCTCCTCCATGAGATTTG+TGG | - | chr3.2:63022500-63022519 | None:intergenic | 45.0% | |
| GCACTGTAATGAGAGGAGTT+CGG | + | chr3.2:63023075-63023094 | MS.gene62173:CDS | 45.0% | |
| GCCAGAGATAAGCTGATTGA+TGG | + | chr3.2:63022402-63022421 | MS.gene62173:CDS | 45.0% | |
| GCCATCAATCAGCTTATCTC+TGG | - | chr3.2:63022406-63022425 | None:intergenic | 45.0% | |
| GCTGGATTCTGTCAAAACTC+TGG | + | chr3.2:63021488-63021507 | MS.gene62173:intron | 45.0% | |
| GGACATTGGAGTTACTGAAG+TGG | + | chr3.2:63022147-63022166 | MS.gene62173:CDS | 45.0% | |
| GGCATTCAACTGTTGGTCAA+TGG | + | chr3.2:63023138-63023157 | MS.gene62173:CDS | 45.0% | |
| GGCTATCAATTACCAACCAG+AGG | + | chr3.2:63022174-63022193 | MS.gene62173:CDS | 45.0% | |
| GTACTATTGAGTCAGGTGTC+AGG | + | chr3.2:63023042-63023061 | MS.gene62173:CDS | 45.0% | |
| GTGCATGAGACAGCCAAAAT+TGG | + | chr3.2:63022975-63022994 | MS.gene62173:CDS | 45.0% | |
| GTTGACGAGCCATCGAAATA+TGG | + | chr3.2:63022621-63022640 | MS.gene62173:CDS | 45.0% | |
| TGACACGGTTAGGAAAAGAG+AGG | - | chr3.2:63022211-63022230 | None:intergenic | 45.0% | |
| TGAGAATGACTGACACGGTT+AGG | - | chr3.2:63022221-63022240 | None:intergenic | 45.0% | |
| TGCATATCCAGCAGCATCAT+CGG | + | chr3.2:63023113-63023132 | MS.gene62173:CDS | 45.0% | |
| TGGAGGAGAAGCTTCCATAA+TGG | + | chr3.2:63022509-63022528 | MS.gene62173:CDS | 45.0% | |
| TTATCTCTGGCAAGAGCCAA+GGG | - | chr3.2:63022393-63022412 | None:intergenic | 45.0% | |
| TTGCTGTCTGTGAGTAGATG+CGG | + | chr3.2:63022007-63022026 | MS.gene62173:intron | 45.0% | |
| TTGTTCTTGCTTGCGTGAGA+AGG | + | chr3.2:63021914-63021933 | MS.gene62173:intron | 45.0% | |
| ! | AACGTTGGTTGTTGCCTTGT+TGG | - | chr3.2:63021461-63021480 | None:intergenic | 45.0% |
| ! | AGCCAACACAATGAAGGTGT+TGG | - | chr3.2:63021644-63021663 | None:intergenic | 45.0% |
| ! | AGTTTACAGCAATGGTGGTG+TGG | + | chr3.2:63023214-63023233 | MS.gene62173:CDS | 45.0% |
| ! | CCTATTGAACCCCTCAGTTT+TGG | + | chr3.2:63022737-63022756 | MS.gene62173:CDS | 45.0% |
| ! | CTATATGCAATGGTTCTGCC+TGG | + | chr3.2:63022828-63022847 | MS.gene62173:CDS | 45.0% |
| ! | TTGATTCTGGTTGGAGGGTT+TGG | + | chr3.2:63021111-63021130 | MS.gene62173:CDS | 45.0% |
| !! | AAGGCATTGATTCTGGTTGG+AGG | + | chr3.2:63021105-63021124 | MS.gene62173:CDS | 45.0% |
| !! | AGGCATTGATTCTGGTTGGA+GGG | + | chr3.2:63021106-63021125 | MS.gene62173:CDS | 45.0% |
| !! | CAACACAATGAAGGTGTTGG+AGG | - | chr3.2:63021641-63021660 | None:intergenic | 45.0% |
| !! | TCGCACTTTTTGAGGAAAGG+GGG | - | chr3.2:63021890-63021909 | None:intergenic | 45.0% |
| AGGTCGCAATTTAGGCGACT+AGG | - | chr3.2:63021598-63021617 | None:intergenic | 50.0% | |
| ATCGGGTGGCATTCAACTGT+TGG | + | chr3.2:63023131-63023150 | MS.gene62173:CDS | 50.0% | |
| ATTGGCGAGGGATGTCTCAT+TGG | + | chr3.2:63022993-63023012 | MS.gene62173:CDS | 50.0% | |
| CAAGCCCATGATTCTGCATC+AGG | + | chr3.2:63021191-63021210 | MS.gene62173:CDS | 50.0% | |
| CACAGACAGCAAAGGGATGA+TGG | - | chr3.2:63021999-63022018 | None:intergenic | 50.0% | |
| CCAATGTCCATCCAGAATCC+AGG | - | chr3.2:63022849-63022868 | None:intergenic | 50.0% | |
| CCAGGACCAATTGCAACATC+AGG | - | chr3.2:63023020-63023039 | None:intergenic | 50.0% | |
| CCTGACTCAATAGTACAGCC+AGG | - | chr3.2:63023038-63023057 | None:intergenic | 50.0% | |
| CCTGATGTTGCAATTGGTCC+TGG | + | chr3.2:63023017-63023036 | MS.gene62173:CDS | 50.0% | |
| CCTGGATTCTGGATGGACAT+TGG | + | chr3.2:63022846-63022865 | MS.gene62173:CDS | 50.0% | |
| CCTGGCTGTACTATTGAGTC+AGG | + | chr3.2:63023035-63023054 | MS.gene62173:CDS | 50.0% | |
| CTTATCTCTGGCAAGAGCCA+AGG | - | chr3.2:63022394-63022413 | None:intergenic | 50.0% | |
| GAGACAGCCAAAATTGGCGA+GGG | + | chr3.2:63022981-63023000 | MS.gene62173:CDS | 50.0% | |
| GATGGACATTGGACAGCCAA+GGG | + | chr3.2:63022857-63022876 | MS.gene62173:CDS | 50.0% | |
| GCACAATCCATACCTCTGGT+TGG | - | chr3.2:63022189-63022208 | None:intergenic | 50.0% | |
| GCATATCCAGCAGCATCATC+GGG | + | chr3.2:63023114-63023133 | MS.gene62173:CDS | 50.0% | |
| GGTCGCAATTTAGGCGACTA+GGG | - | chr3.2:63021597-63021616 | None:intergenic | 50.0% | |
| GTCGCAATTTAGGCGACTAG+GGG | - | chr3.2:63021596-63021615 | None:intergenic | 50.0% | |
| GTCGCCTAAATTGCGACCTT+TGG | + | chr3.2:63021599-63021618 | MS.gene62173:intron | 50.0% | |
| TCTTCTTCCTGAGTGAGTCC+AGG | - | chr3.2:63022908-63022927 | None:intergenic | 50.0% | |
| TGAGACAGCCAAAATTGGCG+AGG | + | chr3.2:63022980-63022999 | MS.gene62173:CDS | 50.0% | |
| TGCTGTCTGTGAGTAGATGC+GGG | + | chr3.2:63022008-63022027 | MS.gene62173:intron | 50.0% | |
| TGGAGTTACTGAAGTGGTGC+TGG | + | chr3.2:63022153-63022172 | MS.gene62173:CDS | 50.0% | |
| TTGGGAACGCTGAGTGTCAA+TGG | - | chr3.2:63021150-63021169 | None:intergenic | 50.0% | |
| ! | AACAGGTCTGAGACTCTACC+TGG | + | chr3.2:63022887-63022906 | MS.gene62173:CDS | 50.0% |
| ! | ACTTCTTCCAAGTTGGCCAG+TGG | + | chr3.2:63022927-63022946 | MS.gene62173:CDS | 50.0% |
| ! | AGAGGCACAATCCATACCTC+TGG | - | chr3.2:63022193-63022212 | None:intergenic | 50.0% |
| ! | CAATGGTTCTGCCTGGATTC+TGG | + | chr3.2:63022835-63022854 | MS.gene62173:CDS | 50.0% |
| ! | GAGACATCCCTCGCCAATTT+TGG | - | chr3.2:63022991-63023010 | None:intergenic | 50.0% |
| ! | GAGGGTTTGGAACAAGGTTG+AGG | + | chr3.2:63021124-63021143 | MS.gene62173:CDS | 50.0% |
| ! | GGGTGGATTTAGTCCCACAT+CGG | + | chr3.2:63021670-63021689 | MS.gene62173:intron | 50.0% |
| ! | TGGTTGGAGGGTTTGGAACA+AGG | + | chr3.2:63021118-63021137 | MS.gene62173:CDS | 50.0% |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | - | chr3.2:63021738-63021757 | None:intergenic | 50.0% |
| !! | CCTCACAAAACCGGCTTGTA+AGG | - | chr3.2:63021743-63021762 | None:intergenic | 50.0% |
| !! | CCTTACAAGCCGGTTTTGTG+AGG | + | chr3.2:63021740-63021759 | MS.gene62173:intron | 50.0% |
| !! | GACAGCAAAGGGATGATGGA+AGG | - | chr3.2:63021995-63022014 | None:intergenic | 50.0% |
| !! | TTGTGTTGGCTTTGAGAGGG+TGG | + | chr3.2:63021653-63021672 | MS.gene62173:intron | 50.0% |
| ACTGAACCATTGGGGACTGC+AGG | + | chr3.2:63022366-63022385 | MS.gene62173:CDS | 55.0% | |
| CTAGGGGCAGACCGCAATTA+AGG | - | chr3.2:63021580-63021599 | None:intergenic | 55.0% | |
| GACTCTACCTGGACTCACTC+AGG | + | chr3.2:63022898-63022917 | MS.gene62173:CDS | 55.0% | |
| GCACTCCTCACCTTACAAGC+CGG | + | chr3.2:63021730-63021749 | MS.gene62173:intron | 55.0% | |
| GGATGGACATTGGACAGCCA+AGG | + | chr3.2:63022856-63022875 | MS.gene62173:CDS | 55.0% | |
| GGTTCTGCCTGGATTCTGGA+TGG | + | chr3.2:63022839-63022858 | MS.gene62173:CDS | 55.0% | |
| TATCCAGCAGCATCATCGGG+TGG | + | chr3.2:63023117-63023136 | MS.gene62173:CDS | 55.0% | |
| TATGGAAGAGACTACCGGGC+AGG | + | chr3.2:63022653-63022672 | MS.gene62173:CDS | 55.0% | |
| ! | CCAGTGGCCCTCACATTTTG+GGG | + | chr3.2:63022943-63022962 | MS.gene62173:CDS | 55.0% |
| ! | GCCAGTGGCCCTCACATTTT+GGG | + | chr3.2:63022942-63022961 | MS.gene62173:CDS | 55.0% |
| ! | GGTGTTGGAGGCTGCAATGA+AGG | - | chr3.2:63021629-63021648 | None:intergenic | 55.0% |
| !! | TGGTGTGGTTTTGCCCCACA+AGG | + | chr3.2:63023229-63023248 | MS.gene62173:CDS | 55.0% |
| AAGGGACCTGCAGTCCCCAA+TGG | - | chr3.2:63022375-63022394 | None:intergenic | 60.0% | |
| ATGCCACCCGATGATGCTGC+TGG | - | chr3.2:63023123-63023142 | None:intergenic | 60.0% | |
| ATTGGGGACTGCAGGTCCCT+TGG | + | chr3.2:63022374-63022393 | MS.gene62173:CDS | 60.0% | |
| CCCCAAAATGTGAGGGCCAC+TGG | - | chr3.2:63022946-63022965 | None:intergenic | 60.0% | |
| GGGGCAGACCGCAATTAAGG+CGG | - | chr3.2:63021577-63021596 | None:intergenic | 60.0% | |
| ! | GGCCAGTGGCCCTCACATTT+TGG | + | chr3.2:63022941-63022960 | MS.gene62173:CDS | 60.0% |
| ! | TGTTGGTCAATGGGCTCGCG+TGG | + | chr3.2:63023148-63023167 | MS.gene62173:CDS | 60.0% |
| GTGAGGGCCACTGGCCAACT+TGG | - | chr3.2:63022937-63022956 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 63021102 | 63023292 | 63021102 | ID=MS.gene62173 |
| chr3.2 | mRNA | 63021102 | 63023292 | 63021102 | ID=MS.gene62173.t1;Parent=MS.gene62173 |
| chr3.2 | exon | 63021102 | 63021212 | 63021102 | ID=MS.gene62173.t1.exon1;Parent=MS.gene62173.t1 |
| chr3.2 | CDS | 63021102 | 63021212 | 63021102 | ID=cds.MS.gene62173.t1;Parent=MS.gene62173.t1 |
| chr3.2 | exon | 63022133 | 63022195 | 63022133 | ID=MS.gene62173.t1.exon2;Parent=MS.gene62173.t1 |
| chr3.2 | CDS | 63022133 | 63022195 | 63022133 | ID=cds.MS.gene62173.t1;Parent=MS.gene62173.t1 |
| chr3.2 | exon | 63022300 | 63022539 | 63022300 | ID=MS.gene62173.t1.exon3;Parent=MS.gene62173.t1 |
| chr3.2 | CDS | 63022300 | 63022539 | 63022300 | ID=cds.MS.gene62173.t1;Parent=MS.gene62173.t1 |
| chr3.2 | exon | 63022621 | 63023292 | 63022621 | ID=MS.gene62173.t1.exon4;Parent=MS.gene62173.t1 |
| chr3.2 | CDS | 63022621 | 63023292 | 63022621 | ID=cds.MS.gene62173.t1;Parent=MS.gene62173.t1 |
| Gene Sequence |
| Protein sequence |
