Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62511.t1 | XP_013448021.1 | 95.4 | 412 | 19 | 0 | 1 | 412 | 1 | 412 | 7.00E-230 | 806.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62511.t1 | Q67ZU1 | 60.0 | 405 | 155 | 4 | 12 | 411 | 14 | 416 | 7.8e-145 | 515.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62511.t1 | A0A072TYW1 | 95.4 | 412 | 19 | 0 | 1 | 412 | 1 | 412 | 5.1e-230 | 806.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene029607 | MS.gene62511 | PPI |
| MS.gene62511 | MS.gene71663 | PPI |
| MS.gene060313 | MS.gene62511 | PPI |
| MS.gene029609 | MS.gene62511 | PPI |
| MS.gene060315 | MS.gene62511 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62511.t1 | MTR_7g029365 | 95.388 | 412 | 19 | 0 | 1 | 412 | 1 | 412 | 0.0 | 819 |
| MS.gene62511.t1 | MTR_7g029365 | 94.771 | 306 | 16 | 0 | 1 | 306 | 1 | 306 | 0.0 | 604 |
| MS.gene62511.t1 | MTR_6g023740 | 57.212 | 416 | 170 | 5 | 1 | 411 | 1 | 413 | 3.65e-175 | 495 |
| MS.gene62511.t1 | MTR_6g023715 | 54.699 | 415 | 163 | 7 | 1 | 411 | 1 | 394 | 1.69e-163 | 465 |
| MS.gene62511.t1 | MTR_6g023750 | 58.873 | 355 | 143 | 3 | 60 | 411 | 2 | 356 | 5.00e-156 | 444 |
| MS.gene62511.t1 | MTR_5g084950 | 52.139 | 374 | 172 | 2 | 38 | 410 | 33 | 400 | 3.17e-143 | 414 |
| MS.gene62511.t1 | MTR_7g081050 | 48.907 | 366 | 184 | 1 | 45 | 410 | 41 | 403 | 2.73e-134 | 391 |
| MS.gene62511.t1 | MTR_3g081060 | 50.272 | 368 | 178 | 3 | 45 | 410 | 45 | 409 | 6.80e-133 | 388 |
| MS.gene62511.t1 | MTR_3g081040 | 49.462 | 372 | 184 | 2 | 40 | 410 | 36 | 404 | 7.98e-133 | 387 |
| MS.gene62511.t1 | MTR_6g033965 | 43.672 | 403 | 216 | 6 | 9 | 410 | 10 | 402 | 1.56e-121 | 358 |
| MS.gene62511.t1 | MTR_3g080980 | 46.448 | 366 | 193 | 1 | 45 | 410 | 41 | 403 | 1.50e-117 | 348 |
| MS.gene62511.t1 | MTR_6g033975 | 44.959 | 367 | 194 | 5 | 45 | 410 | 42 | 401 | 6.23e-116 | 344 |
| MS.gene62511.t1 | MTR_7g081060 | 44.293 | 368 | 199 | 4 | 45 | 411 | 42 | 404 | 3.40e-111 | 332 |
| MS.gene62511.t1 | MTR_1g107330 | 39.633 | 381 | 218 | 5 | 38 | 412 | 25 | 399 | 3.37e-101 | 306 |
| MS.gene62511.t1 | MTR_0595s0010 | 57.627 | 236 | 97 | 3 | 1 | 234 | 1 | 235 | 4.36e-98 | 296 |
| MS.gene62511.t1 | MTR_1g107330 | 41.455 | 275 | 154 | 3 | 38 | 306 | 25 | 298 | 1.19e-71 | 228 |
| MS.gene62511.t1 | MTR_5g006650 | 47.953 | 171 | 73 | 4 | 69 | 234 | 44 | 203 | 1.80e-44 | 154 |
| MS.gene62511.t1 | MTR_6g085070 | 25.954 | 393 | 242 | 14 | 48 | 407 | 160 | 536 | 2.03e-18 | 87.8 |
| MS.gene62511.t1 | MTR_6g085070 | 25.954 | 393 | 242 | 14 | 48 | 407 | 292 | 668 | 2.28e-18 | 87.8 |
| MS.gene62511.t1 | MTR_8g103850 | 25.313 | 399 | 253 | 11 | 48 | 414 | 298 | 683 | 7.28e-18 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62511.t1 | AT5G14180 | 60.000 | 405 | 155 | 4 | 12 | 411 | 14 | 416 | 0.0 | 524 |
| MS.gene62511.t1 | AT5G14180 | 63.871 | 310 | 112 | 0 | 102 | 411 | 7 | 316 | 4.38e-155 | 441 |
| MS.gene62511.t1 | AT5G14180 | 63.518 | 307 | 112 | 0 | 105 | 411 | 1 | 307 | 1.05e-152 | 434 |
| MS.gene62511.t1 | AT5G14180 | 59.667 | 300 | 114 | 4 | 12 | 306 | 14 | 311 | 3.46e-132 | 382 |
| MS.gene62511.t1 | AT5G14180 | 54.737 | 285 | 120 | 5 | 12 | 289 | 14 | 296 | 6.69e-111 | 328 |
| MS.gene62511.t1 | AT2G15230 | 38.482 | 369 | 211 | 5 | 45 | 410 | 30 | 385 | 6.28e-93 | 285 |
| MS.gene62511.t1 | AT1G73920 | 25.193 | 389 | 242 | 10 | 48 | 402 | 227 | 600 | 6.55e-19 | 89.4 |
| MS.gene62511.t1 | AT1G73920 | 25.193 | 389 | 242 | 10 | 48 | 402 | 296 | 669 | 8.26e-19 | 89.4 |
| MS.gene62511.t1 | AT1G18460 | 25.641 | 390 | 239 | 14 | 48 | 402 | 294 | 667 | 1.38e-17 | 85.5 |
Find 87 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGATCTGCTAGAATTAA+AGG | 0.174183 | 7.3:+70409728 | None:intergenic |
| TGCTCATGCTGATTACATTA+TGG | 0.187385 | 7.3:-70406846 | MS.gene62511:CDS |
| AAACAGATCACTACACTATT+TGG | 0.227585 | 7.3:-70408160 | MS.gene62511:intron |
| CTTCTATGTTCTTACCCTTT+AGG | 0.233695 | 7.3:+70408121 | None:intergenic |
| GTTGCAGCCAAATCCTTTAT+TGG | 0.270019 | 7.3:-70408347 | MS.gene62511:CDS |
| TTTATGTACCTCACCAATAA+AGG | 0.282079 | 7.3:+70408334 | None:intergenic |
| CAGATCATGGCTTTGATGTT+TGG | 0.292443 | 7.3:-70409715 | MS.gene62511:CDS |
| TACCTTCTGGAATCCTTTGC+AGG | 0.303254 | 7.3:+70413597 | None:intergenic |
| GCTCATGCTGATTACATTAT+GGG | 0.304433 | 7.3:-70406845 | MS.gene62511:CDS |
| GTGTAAATATGCAGGCCTTT+TGG | 0.322829 | 7.3:-70408744 | MS.gene62511:intron |
| AAGTCGTAGCAGTCAATTCT+AGG | 0.324029 | 7.3:+70407929 | None:intergenic |
| GCTTCTGCTGTCATTGTTCA+TGG | 0.326523 | 7.3:-70414104 | MS.gene62511:CDS |
| ATGTTATTACCTGAAGTTCT+TGG | 0.332001 | 7.3:+70414072 | None:intergenic |
| ATTAAAGGCAAGTCTTGTTC+TGG | 0.333137 | 7.3:+70409743 | None:intergenic |
| GTTTCAAGCCGTGGCTCCTT+TGG | 0.343847 | 7.3:-70414173 | MS.gene62511:CDS |
| GATTATGTGTTTAGCCAAAC+AGG | 0.355642 | 7.3:-70408673 | MS.gene62511:CDS |
| TACCTCACCAATAAAGGATT+TGG | 0.359496 | 7.3:+70408340 | None:intergenic |
| TTGAAGGTTACAACTAAAGA+TGG | 0.383740 | 7.3:-70413632 | MS.gene62511:intron |
| GACTTGATGACTGCATTAAC+TGG | 0.384778 | 7.3:-70407911 | MS.gene62511:intron |
| AGAGTTGAAGGTAGAAATGA+TGG | 0.387890 | 7.3:-70413575 | MS.gene62511:CDS |
| TCCTTTGGAAGAAATCAAAA+TGG | 0.388813 | 7.3:-70414158 | MS.gene62511:CDS |
| ATACAAGTGCCAAGAACTTC+AGG | 0.389343 | 7.3:-70414081 | MS.gene62511:intron |
| ATGTTGAGAATTTACTTGAT+AGG | 0.389542 | 7.3:-70406919 | MS.gene62511:CDS |
| AATTAATCTTCTGCCCTGTT+TGG | 0.393082 | 7.3:+70408659 | None:intergenic |
| CTACCTTCAACTCTACCTTC+TGG | 0.406112 | 7.3:+70413584 | None:intergenic |
| ATGTGGCTTAGATAAGCAAT+AGG | 0.409857 | 7.3:+70408389 | None:intergenic |
| CTAGCAGAATTTAATCCTAA+AGG | 0.421609 | 7.3:-70408136 | MS.gene62511:CDS |
| CCTTTAATTCTAGCAGATCA+TGG | 0.423751 | 7.3:-70409728 | MS.gene62511:CDS |
| TAGCAGAATTTAATCCTAAA+GGG | 0.427487 | 7.3:-70408135 | MS.gene62511:intron |
| ACATAAACATACTGGGTTAG+AGG | 0.428314 | 7.3:+70409640 | None:intergenic |
| TTCTTTGTTGATGTTGATTG+AGG | 0.434847 | 7.3:+70407742 | None:intergenic |
| TAGTGCATTATGTTATAATC+TGG | 0.439008 | 7.3:+70407043 | None:intergenic |
| GACTTGAGAAAGGCATCAAC+AGG | 0.457432 | 7.3:+70407965 | None:intergenic |
| ACAGAGAACTGCATGAAGCC+TGG | 0.466390 | 7.3:+70414239 | None:intergenic |
| ATTCCAGAAGGTAGAGTTGA+AGG | 0.468226 | 7.3:-70413587 | MS.gene62511:CDS |
| CATAAACATACTGGGTTAGA+GGG | 0.468329 | 7.3:+70409641 | None:intergenic |
| GATTATAACATAATGCACTA+TGG | 0.477158 | 7.3:-70407040 | MS.gene62511:CDS |
| AACAAAGAACATGGTGCACT+TGG | 0.480584 | 7.3:-70407728 | MS.gene62511:CDS |
| ATGTTGGATAGGTTATATAT+TGG | 0.480961 | 7.3:+70407004 | None:intergenic |
| TAATTACGTTGGCCACTCTC+TGG | 0.482825 | 7.3:-70408641 | MS.gene62511:intron |
| TTGGATAGGTTATATATTGG+TGG | 0.488015 | 7.3:+70407007 | None:intergenic |
| ATACCTCTCTTCATTAGCTA+TGG | 0.502974 | 7.3:-70406971 | MS.gene62511:CDS |
| AGGTATATCATGTGGAATGT+TGG | 0.504399 | 7.3:+70406988 | None:intergenic |
| ATAAAGCTGCTGATTTCAGC+TGG | 0.510041 | 7.3:+70408417 | None:intergenic |
| TGATGGGACTAGGAAACAAC+CGG | 0.513045 | 7.3:-70413558 | MS.gene62511:CDS |
| GAGACCAACATGGTTTCTCC+AGG | 0.517663 | 7.3:-70414257 | None:intergenic |
| AGCCACATGAACACTGCACT+TGG | 0.518331 | 7.3:-70408374 | MS.gene62511:CDS |
| CCTTCTCAAGTTTCAAGCCG+TGG | 0.519421 | 7.3:-70414182 | MS.gene62511:CDS |
| TACTTCTCTTATCAACATCA+TGG | 0.520662 | 7.3:+70406888 | None:intergenic |
| GCTTTAGCTTCCTTCTCTGA+AGG | 0.525067 | 7.3:-70408452 | MS.gene62511:CDS |
| TGGATAGGTTATATATTGGT+GGG | 0.529275 | 7.3:+70407008 | None:intergenic |
| GATATTACAACATGGAGTAT+TGG | 0.531184 | 7.3:-70413534 | MS.gene62511:CDS |
| AACTATGCAGTTGTTAGACG+TGG | 0.537740 | 7.3:-70407094 | MS.gene62511:intron |
| TATCATGTGGAATGTTGGAT+AGG | 0.547791 | 7.3:+70406993 | None:intergenic |
| AAGGTAGAAATGATGGGACT+AGG | 0.547866 | 7.3:-70413568 | MS.gene62511:CDS |
| AGCCAAATCCTTTATTGGTG+AGG | 0.551660 | 7.3:-70408342 | MS.gene62511:intron |
| GTCCCAAGACCAATTCCAAA+AGG | 0.554581 | 7.3:+70408729 | None:intergenic |
| CTCATGCTGATTACATTATG+GGG | 0.555559 | 7.3:-70406844 | MS.gene62511:CDS |
| TGTGGCTTAGATAAGCAATA+GGG | 0.559261 | 7.3:+70408390 | None:intergenic |
| TGAAGGTTACAACTAAAGAT+GGG | 0.560420 | 7.3:-70413631 | MS.gene62511:intron |
| TAGTCGCCGACATGTCTCAT+TGG | 0.565789 | 7.3:-70409666 | MS.gene62511:CDS |
| GTTAACCCTCCTTTGAGTGA+TGG | 0.566373 | 7.3:-70414134 | MS.gene62511:CDS |
| CCTCTCTTCATTAGCTATGG+AGG | 0.571727 | 7.3:-70406968 | MS.gene62511:CDS |
| AGCACAGAGAGACTTGAGAA+AGG | 0.572980 | 7.3:+70407955 | None:intergenic |
| CACCAAGTGCAGTGTTCATG+TGG | 0.576864 | 7.3:+70408372 | None:intergenic |
| GTTTGGATTGCTAACACAAG+AGG | 0.581774 | 7.3:-70409698 | MS.gene62511:CDS |
| ATTACAACATGGAGTATTGG+TGG | 0.587960 | 7.3:-70413531 | MS.gene62511:intron |
| ACTATGCAGTTGTTAGACGT+GGG | 0.595087 | 7.3:-70407093 | MS.gene62511:intron |
| ACTCCATGTTGTAATATCAC+CGG | 0.596325 | 7.3:+70413539 | None:intergenic |
| GCACATATGCCATCACTCAA+AGG | 0.612019 | 7.3:+70414125 | None:intergenic |
| GATTTCTTCCAAAGGAGCCA+CGG | 0.615814 | 7.3:+70414165 | None:intergenic |
| GAGTTGAAGGTAGAAATGAT+GGG | 0.616529 | 7.3:-70413574 | MS.gene62511:CDS |
| CCACGGCTTGAAACTTGAGA+AGG | 0.624406 | 7.3:+70414182 | None:intergenic |
| GGGTGCAGGATGGCATGACA+TGG | 0.627156 | 7.3:-70409778 | MS.gene62511:intron |
| ATGAAGAGAGGTATATCATG+TGG | 0.628119 | 7.3:+70406980 | None:intergenic |
| CATATGCCATCACTCAAAGG+AGG | 0.628724 | 7.3:+70414128 | None:intergenic |
| AGGGGTCCAATGAGACATGT+CGG | 0.633111 | 7.3:+70409660 | None:intergenic |
| ATTATGTGTTTAGCCAAACA+GGG | 0.645703 | 7.3:-70408672 | MS.gene62511:CDS |
| CTATGCAGTTGTTAGACGTG+GGG | 0.648539 | 7.3:-70407092 | MS.gene62511:intron |
| AGTAATGGAGTACCAGAGAG+TGG | 0.649875 | 7.3:+70408629 | None:intergenic |
| CCTCCATAGCTAATGAAGAG+AGG | 0.650648 | 7.3:+70406968 | None:intergenic |
| CAACCGGTGATATTACAACA+TGG | 0.652027 | 7.3:-70413542 | MS.gene62511:CDS |
| ATAAACATACTGGGTTAGAG+GGG | 0.656553 | 7.3:+70409642 | None:intergenic |
| ATCAACATCAACAAAGAACA+TGG | 0.657345 | 7.3:-70407737 | MS.gene62511:CDS |
| AGCCTGCAAAGGATTCCAGA+AGG | 0.663410 | 7.3:-70413599 | MS.gene62511:CDS |
| ATATGCCATCACTCAAAGGA+GGG | 0.668361 | 7.3:+70414129 | None:intergenic |
| GGGCAGAAGATTAATTACGT+TGG | 0.668941 | 7.3:-70408652 | MS.gene62511:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 70406781 | 70414270 | 70406781 | ID=MS.gene62511 |
| chr7.3 | mRNA | 70406781 | 70414270 | 70406781 | ID=MS.gene62511.t1;Parent=MS.gene62511 |
| chr7.3 | exon | 70414082 | 70414270 | 70414082 | ID=MS.gene62511.t1.exon1;Parent=MS.gene62511.t1 |
| chr7.3 | CDS | 70414082 | 70414270 | 70414082 | ID=cds.MS.gene62511.t1;Parent=MS.gene62511.t1 |
| chr7.3 | exon | 70413532 | 70413648 | 70413532 | ID=MS.gene62511.t1.exon2;Parent=MS.gene62511.t1 |
| chr7.3 | CDS | 70413532 | 70413648 | 70413532 | ID=cds.MS.gene62511.t1;Parent=MS.gene62511.t1 |
| chr7.3 | exon | 70409652 | 70409792 | 70409652 | ID=MS.gene62511.t1.exon3;Parent=MS.gene62511.t1 |
| chr7.3 | CDS | 70409652 | 70409792 | 70409652 | ID=cds.MS.gene62511.t1;Parent=MS.gene62511.t1 |
| chr7.3 | exon | 70408642 | 70408752 | 70408642 | ID=MS.gene62511.t1.exon4;Parent=MS.gene62511.t1 |
| chr7.3 | CDS | 70408642 | 70408752 | 70408642 | ID=cds.MS.gene62511.t1;Parent=MS.gene62511.t1 |
| chr7.3 | exon | 70408343 | 70408486 | 70408343 | ID=MS.gene62511.t1.exon5;Parent=MS.gene62511.t1 |
| chr7.3 | CDS | 70408343 | 70408486 | 70408343 | ID=cds.MS.gene62511.t1;Parent=MS.gene62511.t1 |
| chr7.3 | exon | 70408136 | 70408176 | 70408136 | ID=MS.gene62511.t1.exon6;Parent=MS.gene62511.t1 |
| chr7.3 | CDS | 70408136 | 70408176 | 70408136 | ID=cds.MS.gene62511.t1;Parent=MS.gene62511.t1 |
| chr7.3 | exon | 70407912 | 70407991 | 70407912 | ID=MS.gene62511.t1.exon7;Parent=MS.gene62511.t1 |
| chr7.3 | CDS | 70407912 | 70407991 | 70407912 | ID=cds.MS.gene62511.t1;Parent=MS.gene62511.t1 |
| chr7.3 | exon | 70407722 | 70407817 | 70407722 | ID=MS.gene62511.t1.exon8;Parent=MS.gene62511.t1 |
| chr7.3 | CDS | 70407722 | 70407817 | 70407722 | ID=cds.MS.gene62511.t1;Parent=MS.gene62511.t1 |
| chr7.3 | exon | 70406781 | 70407106 | 70406781 | ID=MS.gene62511.t1.exon9;Parent=MS.gene62511.t1 |
| chr7.3 | CDS | 70406781 | 70407106 | 70406781 | ID=cds.MS.gene62511.t1;Parent=MS.gene62511.t1 |
| Gene Sequence |
| Protein sequence |