AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene62622

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62622.t1 MTR_8g106740 96.169 261 6 1 1 257 1 261 0.0 512
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62622.t1 AT3G18165 63.673 245 86 2 8 249 2 246 6.37e-114 327

Find 57 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAATTATTACCTGAAAAT+TGG 0.178579 4.2:-618835 None:intergenic
TTGGAGTTGTTGCTTAAATA+TGG 0.210527 4.2:+619207 MS.gene62622:CDS
AATATACAGAATGGAAAATT+TGG 0.215246 4.2:+619188 MS.gene62622:intron
AACCACCACCTGTTAATAAA+TGG 0.267827 4.2:+619005 MS.gene62622:CDS
TTGGATGCTATCACTGAAAA+TGG 0.288576 4.2:+621934 MS.gene62622:CDS
TCATCGTTCCATTTATTAAC+AGG 0.301941 4.2:-619013 None:intergenic
CCTGATGATATTTCCTTTCA+CGG 0.355650 4.2:-621590 None:intergenic
AAATGGCCAACTGGCAAATT+CGG 0.358938 4.2:+621951 MS.gene62622:CDS
TTGTGCTGTTTCCATGCATC+AGG 0.378418 4.2:-619231 None:intergenic
GGCCTCCTGTTTCTCTTGAT+AGG 0.382975 4.2:+618966 MS.gene62622:CDS
TGGTGGTTCTAATTCATATC+TGG 0.391099 4.2:-618990 None:intergenic
CTTCAGGATTATCCAATGAT+TGG 0.394401 4.2:+618914 MS.gene62622:intron
CTGTAATCGTCGTCGATGTA+AGG 0.408083 4.2:-618705 None:intergenic
AGGCAATGCATCGATGATTT+CGG 0.412030 4.2:-618685 None:intergenic
CTGGACCTATCAAGAGAAAC+AGG 0.424750 4.2:-618971 None:intergenic
TCTTTCCAGAGGCTGGAACT+TGG 0.442445 4.2:+621915 MS.gene62622:intron
CTTGAAGCTCCACCTTCTTA+CGG 0.442648 4.2:+618642 MS.gene62622:CDS
TCGACTTCGATCTTAACCCT+TGG 0.460976 4.2:-618732 None:intergenic
CGACTTCGATCTTAACCCTT+GGG 0.465911 4.2:-618731 None:intergenic
CAGAATGCAGAAATTAGCTC+AGG 0.472152 4.2:+621539 MS.gene62622:intron
TTCCATTTATTAACAGGTGG+TGG 0.485498 4.2:-619007 None:intergenic
TCATACTCTCTACCAATCAT+TGG 0.493778 4.2:-618926 None:intergenic
TTCTTCAATATCAAACCATC+AGG 0.495320 4.2:+619074 MS.gene62622:CDS
TATCACTGAAAATGGCCAAC+TGG 0.495702 4.2:+621942 MS.gene62622:CDS
CCGTGAAAGGAAATATCATC+AGG 0.513849 4.2:+621590 MS.gene62622:CDS
GAAGAGGTGGAAAATCTTTG+AGG 0.518940 4.2:-618806 None:intergenic
GGAAGAAGCAGCAGCAGTAA+CGG 0.525910 4.2:+618606 MS.gene62622:CDS
GAGTATGAGCGTGTAAGAGC+TGG 0.533871 4.2:+618941 MS.gene62622:CDS
AATGGAACGATGAAACTGCT+TGG 0.535567 4.2:+619023 MS.gene62622:CDS
TGCATCGATGATTTCGGCGT+CGG 0.537750 4.2:-618679 None:intergenic
CGATGATTTCGGCGTCGGAA+TGG 0.540962 4.2:-618674 None:intergenic
TGAAAATTGGAAGAGGGAAG+AGG 0.551095 4.2:-618822 None:intergenic
ACAGAGCTCATTCCATTGCA+TGG 0.563696 4.2:-621738 None:intergenic
TATTACCTGAAAATTGGAAG+AGG 0.565356 4.2:-618829 None:intergenic
TTAAATATGGCCCTGATGCA+TGG 0.568166 4.2:+619220 MS.gene62622:CDS
ATGATTCCGAATTTGCCAGT+TGG 0.571957 4.2:-621957 None:intergenic
TGAGAAGAGAAGCAGCAGAA+AGG 0.572177 4.2:+621819 MS.gene62622:CDS
ATTACCTGAAAATTGGAAGA+GGG 0.574966 4.2:-618828 None:intergenic
ACGAAAGGGTAAATCATGAT+GGG 0.575853 4.2:+618579 None:intergenic
GGGTAAATCATGATGGGAGA+AGG 0.576400 4.2:+618585 None:intergenic
AAGCTCCACCTTCTTACGGT+AGG 0.576815 4.2:+618646 MS.gene62622:CDS
GAAACAGCACAATCAACGAT+TGG 0.581574 4.2:+619242 MS.gene62622:CDS
GATTGGAAGTATACTTGTCA+AGG 0.585048 4.2:+619259 MS.gene62622:CDS
TGGCTAGACCTACCGTAAGA+AGG 0.586301 4.2:-618654 None:intergenic
TCGTTCCATTTATTAACAGG+TGG 0.588971 4.2:-619010 None:intergenic
AAATCTTTGAGGAAATCAGC+GGG 0.596837 4.2:-618795 None:intergenic
TTAATGCTTTGTCCATGCAA+TGG 0.598699 4.2:+621726 MS.gene62622:CDS
AAATTGGAAGAGGGAAGAGG+TGG 0.604837 4.2:-618819 None:intergenic
ACGACGATTACAGCGACCCA+AGG 0.617860 4.2:+618715 MS.gene62622:CDS
TGTGCTGTTTCCATGCATCA+GGG 0.618858 4.2:-619230 None:intergenic
CTAGACCTACCGTAAGAAGG+TGG 0.632917 4.2:-618651 None:intergenic
AAAATCTTTGAGGAAATCAG+CGG 0.660874 4.2:-618796 None:intergenic
GCATCTCTTCTTCAACGAGA+CGG 0.670836 4.2:-618755 None:intergenic
CAAAGCATTAAGCTCATATG+CGG 0.683946 4.2:-621714 None:intergenic
CGACGATTACAGCGACCCAA+GGG 0.693830 4.2:+618716 MS.gene62622:CDS
ATGAGCGTGTAAGAGCTGGT+AGG 0.696204 4.2:+618945 MS.gene62622:CDS
GACCTATCAAGAGAAACAGG+AGG 0.712656 4.2:-618968 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAAACTTAAAAGAAAA+AGG - chr4.2:619899-619918 None:intergenic 10.0%
!!! ATTCTATTTTTTAATGAATA+AGG + chr4.2:620757-620776 MS.gene62622:intron 10.0%
!!! TTTAATTCTTGTTTTTTTTT+TGG + chr4.2:620360-620379 MS.gene62622:intron 10.0%
!! ATTAAAAACTTAGAAGAAAA+AGG - chr4.2:620679-620698 None:intergenic 15.0%
!! GAAAATGAAAATGAAAAATA+TGG - chr4.2:619747-619766 None:intergenic 15.0%
!!! TTTGTAAATTTTGTTTTTCT+TGG + chr4.2:621851-621870 MS.gene62622:intron 15.0%
!! AATATACAGAATGGAAAATT+TGG + chr4.2:619188-619207 MS.gene62622:intron 20.0%
!! AGAACATATTTAATGAATCA+AGG - chr4.2:619687-619706 None:intergenic 20.0%
!! ATATTTAATGAATCAAGGTT+GGG - chr4.2:619682-619701 None:intergenic 20.0%
!! ATGAATGTTTCACATAAATA+TGG + chr4.2:620930-620949 MS.gene62622:intron 20.0%
!! ATTGATTACTTTCATGTTTA+GGG + chr4.2:619851-619870 MS.gene62622:intron 20.0%
!! GAAAAGAAAAAAATCTCTTA+AGG + chr4.2:619636-619655 MS.gene62622:intron 20.0%
!! GTATATTAACTTAAACTAGT+TGG - chr4.2:619175-619194 None:intergenic 20.0%
!! GTTAATTATTACCTGAAAAT+TGG - chr4.2:618838-618857 None:intergenic 20.0%
!! TTAAAATCGATGAAAGAAAA+AGG - chr4.2:621441-621460 None:intergenic 20.0%
!! TTTAAAAATAACAGTGACAA+GGG - chr4.2:621637-621656 None:intergenic 20.0%
!!! AATTCTTCATATTTTTCTCT+TGG + chr4.2:620832-620851 MS.gene62622:intron 20.0%
!!! GTTTAAGTTAATATACAGAA+TGG + chr4.2:619179-619198 MS.gene62622:intron 20.0%
!!! TTTCATCGATTTTAATTTTG+AGG + chr4.2:621446-621465 MS.gene62622:intron 20.0%
!!! TTTTAAAAATAACAGTGACA+AGG - chr4.2:621638-621657 None:intergenic 20.0%
!!! TTTTTCCTTTTTTCAAAACA+AGG + chr4.2:620698-620717 MS.gene62622:intron 20.0%
! AAGAAAAAGGTGAATAAAAC+TGG - chr4.2:619886-619905 None:intergenic 25.0%
! AGAACACATTTAATGAATCA+AGG - chr4.2:620466-620485 None:intergenic 25.0%
! AGAATGTTTCATGGTAAATA+TGG + chr4.2:619506-619525 MS.gene62622:intron 25.0%
! ATCTACTACCAATAAGTAAA+TGG - chr4.2:619833-619852 None:intergenic 25.0%
! ATTAAATATGTTCTTGACTC+TGG + chr4.2:619693-619712 MS.gene62622:intron 25.0%
! CATATTTAATGAATCAAGGT+TGG - chr4.2:619683-619702 None:intergenic 25.0%
! CTTGTTAATTAGGAACTTAA+GGG - chr4.2:620996-621015 None:intergenic 25.0%
! GAAAAGGAAACTGAAAAATA+TGG - chr4.2:620526-620545 None:intergenic 25.0%
! GATTGATTACTTTCATGTTT+AGG + chr4.2:619850-619869 MS.gene62622:intron 25.0%
! TAAAAAAATAGAATGACCCA+TGG - chr4.2:619968-619987 None:intergenic 25.0%
! TAATATACCTCTTGTTGAAT+TGG + chr4.2:619459-619478 MS.gene62622:intron 25.0%
!! AATTTTCCCTTTTCAAAACA+AGG + chr4.2:619916-619935 MS.gene62622:intron 25.0%
!! ACTTGTTAATTAGGAACTTA+AGG - chr4.2:620997-621016 None:intergenic 25.0%
!! GGAAGAAATTTAAAACAGAA+AGG - chr4.2:620220-620239 None:intergenic 25.0%
!! GGTTTGAATACTTGTTAATT+AGG - chr4.2:621006-621025 None:intergenic 25.0%
!! TTTATTCTTCCATATTGGTT+TGG + chr4.2:621030-621049 MS.gene62622:intron 25.0%
!! TTTTTCTTTTCCAGCTAATA+AGG - chr4.2:619627-619646 None:intergenic 25.0%
!!! ACTTTGTGTTTTGTTTGAAA+AGG - chr4.2:620542-620561 None:intergenic 25.0%
!!! TCTCAAAATTACTAGTCTTA+AGG + chr4.2:621393-621412 MS.gene62622:intron 25.0%
!!! TTCAACCTTGTTTTGAAAAA+AGG - chr4.2:620706-620725 None:intergenic 25.0%
!!! TTTTAAGACCTTATTAGCTA+CGG + chr4.2:620384-620403 MS.gene62622:intron 25.0%
AAATCAAAACAAAACCCTAG+CGG - chr4.2:618885-618904 None:intergenic 30.0%
AAATTAAAGTGAAGACCTGA+TGG - chr4.2:619092-619111 None:intergenic 30.0%
AATATGAGCCACAGTATAAT+TGG - chr4.2:619298-619317 None:intergenic 30.0%
AATTTCTTCCCAAAAGCAAT+TGG + chr4.2:620230-620249 MS.gene62622:intron 30.0%
ACAAAGTATGTTCCTTTAAC+TGG + chr4.2:620555-620574 MS.gene62622:intron 30.0%
ACTTCTATGTCTTCTATCAT+GGG + chr4.2:620732-620751 MS.gene62622:intron 30.0%
ATTAAATGTGTTCTTGACTC+TGG + chr4.2:620472-620491 MS.gene62622:intron 30.0%
ATTACCTGAAAATTGGAAGA+GGG - chr4.2:618831-618850 None:intergenic 30.0%
CAATATGGAAGAATAAAGTC+AGG - chr4.2:621027-621046 None:intergenic 30.0%
CTGACTTTATTCTTCCATAT+TGG + chr4.2:621025-621044 MS.gene62622:intron 30.0%
GGAAACTGAAAAATATGGAT+CGG - chr4.2:620521-620540 None:intergenic 30.0%
GTTGCTTAATGTGAAGAAAA+AGG - chr4.2:621317-621336 None:intergenic 30.0%
TAACTGGCAATGATGATAAA+AGG + chr4.2:619792-619811 MS.gene62622:intron 30.0%
TACTTCTATGTCTTCTATCA+TGG + chr4.2:620731-620750 MS.gene62622:intron 30.0%
TATTACCTGAAAATTGGAAG+AGG - chr4.2:618832-618851 None:intergenic 30.0%
TCACATAAATATGGTAGTTG+AGG + chr4.2:620939-620958 MS.gene62622:intron 30.0%
TCATCGTTCCATTTATTAAC+AGG - chr4.2:619016-619035 None:intergenic 30.0%
TCTACTAGCATAGAAGTAAA+TGG - chr4.2:620612-620631 None:intergenic 30.0%
TGATTCAGGAGAAAAATAGA+AGG - chr4.2:620010-620029 None:intergenic 30.0%
TTATCATCATTGCCAGTTAA+AGG - chr4.2:619791-619810 None:intergenic 30.0%
TTCTTCAATATCAAACCATC+AGG + chr4.2:619074-619093 MS.gene62622:CDS 30.0%
TTGAAAAAGTTAACCGTGAA+AGG + chr4.2:621577-621596 MS.gene62622:CDS 30.0%
TTGTTCATCCAATTATACTG+TGG + chr4.2:619287-619306 MS.gene62622:intron 30.0%
! AAAATCTTTGAGGAAATCAG+CGG - chr4.2:618799-618818 None:intergenic 30.0%
! ACAAGAGGTATATTAATCTG+AGG - chr4.2:619454-619473 None:intergenic 30.0%
! CTCCTTTTTCTTCACATAAA+AGG + chr4.2:621336-621355 MS.gene62622:intron 30.0%
! TATCTCTTTTCGTATAGCAT+TGG + chr4.2:621494-621513 MS.gene62622:intron 30.0%
! TATTTTTCTCCTGAATCCAA+AGG + chr4.2:620795-620814 MS.gene62622:intron 30.0%
! TTACGTGCATTTTATGTACA+AGG - chr4.2:621163-621182 None:intergenic 30.0%
! TTGGAGTTGTTGCTTAAATA+TGG + chr4.2:619207-619226 MS.gene62622:CDS 30.0%
!! AATTTGATTTGCACAAGTAC+AGG - chr4.2:619386-619405 None:intergenic 30.0%
!! ACTAGTAATTTTGAGAGCAT+TGG - chr4.2:621389-621408 None:intergenic 30.0%
!! TCTATTTTTCTCCTGAATCA+AGG + chr4.2:620010-620029 MS.gene62622:intron 30.0%
!!! ACTTCAACCTTGTTTTGAAA+AGG - chr4.2:619926-619945 None:intergenic 30.0%
!!! AGTTTTAGAGTGTTAGAAAG+AGG + chr4.2:621230-621249 MS.gene62622:intron 30.0%
!!! CTAGTAATTTTGAGAGCATT+GGG - chr4.2:621388-621407 None:intergenic 30.0%
!!! CTTCAACCTTGTTTTGAAAA+GGG - chr4.2:619925-619944 None:intergenic 30.0%
!!! GTTTTAGAGTGTTAGAAAGA+GGG + chr4.2:621231-621250 MS.gene62622:intron 30.0%
!!! GTTTTTTTCTTTCTTTCCAG+AGG + chr4.2:621904-621923 MS.gene62622:intron 30.0%
AAAAATAACAGTGACAAGGG+TGG - chr4.2:621634-621653 None:intergenic 35.0%
AACCACCACCTGTTAATAAA+TGG + chr4.2:619005-619024 MS.gene62622:CDS 35.0%
AATCAAAACAAAACCCTAGC+GGG - chr4.2:618884-618903 None:intergenic 35.0%
ACATCTTTGTCTTCAACCAT+GGG + chr4.2:619949-619968 MS.gene62622:intron 35.0%
AGTTGCTTAGACTGCAATTA+GGG - chr4.2:621294-621313 None:intergenic 35.0%
ATCATTGCCAGTTAAAGGAA+CGG - chr4.2:619786-619805 None:intergenic 35.0%
CCTGATGATATTTCCTTTCA+CGG - chr4.2:621593-621612 None:intergenic 35.0%
CTAAAACTCACTCTCCTATT+GGG - chr4.2:621218-621237 None:intergenic 35.0%
CTGCAGATAAGAATGTTTCA+TGG + chr4.2:619497-619516 MS.gene62622:intron 35.0%
CTTCAGGATTATCCAATGAT+TGG + chr4.2:618914-618933 MS.gene62622:intron 35.0%
GATATTGCATACAACAACCA+AGG - chr4.2:619548-619567 None:intergenic 35.0%
GATTCTTTAAGTCTCTTGCT+TGG + chr4.2:621101-621120 MS.gene62622:intron 35.0%
GGAATGTTTCACAGCAAATA+TGG + chr4.2:620268-620287 MS.gene62622:intron 35.0%
GGATTCAGGAGAAAAATAGA+AGG - chr4.2:620793-620812 None:intergenic 35.0%
TAAGTAAGCAAATGATGCAC+AGG - chr4.2:620123-620142 None:intergenic 35.0%
TACATCTTTGTCTTCAACCA+TGG + chr4.2:619948-619967 MS.gene62622:intron 35.0%
TCAAGAACCAATTCAACAAG+AGG - chr4.2:619469-619488 None:intergenic 35.0%
TCATACTCTCTACCAATCAT+TGG - chr4.2:618929-618948 None:intergenic 35.0%
TCGTTCCATTTATTAACAGG+TGG - chr4.2:619013-619032 None:intergenic 35.0%
TTAATGCTTTGTCCATGCAA+TGG + chr4.2:621726-621745 MS.gene62622:CDS 35.0%
TTCCATTTATTAACAGGTGG+TGG - chr4.2:619010-619029 None:intergenic 35.0%
TTCTTCTTCCGTAGCTAATA+AGG - chr4.2:620395-620414 None:intergenic 35.0%
TTGATTTACGATTCTGCTTC+AGG + chr4.2:618898-618917 MS.gene62622:intron 35.0%
TTGGATGCTATCACTGAAAA+TGG + chr4.2:621934-621953 MS.gene62622:CDS 35.0%
TTGTTGTATGCAATATCCTG+CGG + chr4.2:619551-619570 MS.gene62622:intron 35.0%
TTTCAACCATGATTGACCTT+TGG - chr4.2:620814-620833 None:intergenic 35.0%
! AAATCTTTGAGGAAATCAGC+GGG - chr4.2:618798-618817 None:intergenic 35.0%
! CAAAGCATTAAGCTCATATG+CGG - chr4.2:621717-621736 None:intergenic 35.0%
! CGCCTTTTATGTGAAGAAAA+AGG - chr4.2:621341-621360 None:intergenic 35.0%
! GATTGGAAGTATACTTGTCA+AGG + chr4.2:619259-619278 MS.gene62622:CDS 35.0%
! TCTAAAACTCACTCTCCTAT+TGG - chr4.2:621219-621238 None:intergenic 35.0%
!! GACTTTAAGACCTTATTAGC+TGG + chr4.2:619614-619633 MS.gene62622:intron 35.0%
!! TGGCTGATTTCATCTAGTTT+TGG + chr4.2:621871-621890 MS.gene62622:intron 35.0%
!! TGGTGGTTCTAATTCATATC+TGG - chr4.2:618993-619012 None:intergenic 35.0%
AAAATGAGATCAGTGCACTG+TGG + chr4.2:620870-620889 MS.gene62622:intron 40.0%
AAAATGAGATCAGTGCTCTG+CGG + chr4.2:620083-620102 MS.gene62622:intron 40.0%
AAATGGCCAACTGGCAAATT+CGG + chr4.2:621951-621970 MS.gene62622:CDS 40.0%
AATCCACACAGCAACAAATG+TGG - chr4.2:619340-619359 None:intergenic 40.0%
AATGGAACGATGAAACTGCT+TGG + chr4.2:619023-619042 MS.gene62622:CDS 40.0%
ACAAAGTCCGTTCCTTTAAC+TGG + chr4.2:619776-619795 MS.gene62622:intron 40.0%
ACACATGAGTTTCACCCAAT+AGG + chr4.2:621201-621220 MS.gene62622:intron 40.0%
ACGGAAGAAGAAATCTCTTG+AGG + chr4.2:620403-620422 MS.gene62622:intron 40.0%
ATATGTCTCGAGCACATCAA+AGG - chr4.2:620972-620991 None:intergenic 40.0%
ATGATAAAAGGCCGGTCTTA+CGG + chr4.2:619804-619823 MS.gene62622:intron 40.0%
ATGATTCCGAATTTGCCAGT+TGG - chr4.2:621960-621979 None:intergenic 40.0%
CAGAATGCAGAAATTAGCTC+AGG + chr4.2:621539-621558 MS.gene62622:intron 40.0%
CAGTCATACAGAACAAATGC+AGG - chr4.2:620174-620193 None:intergenic 40.0%
CATGATTGACCTTTGGATTC+AGG - chr4.2:620807-620826 None:intergenic 40.0%
CCGTGAAAGGAAATATCATC+AGG + chr4.2:621590-621609 MS.gene62622:CDS 40.0%
CTCAAGCAACCAAACCAATA+TGG - chr4.2:621042-621061 None:intergenic 40.0%
CTGAATCCAAAGGTCAATCA+TGG + chr4.2:620805-620824 MS.gene62622:intron 40.0%
GAAACAGCACAATCAACGAT+TGG + chr4.2:619242-619261 MS.gene62622:CDS 40.0%
GAAGAGGTGGAAAATCTTTG+AGG - chr4.2:618809-618828 None:intergenic 40.0%
GAGTTGCTTAGACTGCAATT+AGG - chr4.2:621295-621314 None:intergenic 40.0%
GGAGAAAGAGTTAGTTAGTG+TGG - chr4.2:618860-618879 None:intergenic 40.0%
GTATTCCTGGCATTTCTCTA+GGG + chr4.2:621253-621272 MS.gene62622:intron 40.0%
GTTGCATACAACAACAACCA+AGG - chr4.2:620310-620329 None:intergenic 40.0%
TATCACTGAAAATGGCCAAC+TGG + chr4.2:621942-621961 MS.gene62622:CDS 40.0%
TATTCCTGGCATTTCTCTAG+GGG + chr4.2:621254-621273 MS.gene62622:intron 40.0%
TGAAAATTGGAAGAGGGAAG+AGG - chr4.2:618825-618844 None:intergenic 40.0%
TGGCAATGATGATAAAAGGC+CGG + chr4.2:619796-619815 MS.gene62622:intron 40.0%
TGGGTGAAACTCATGTGTTA+AGG - chr4.2:621199-621218 None:intergenic 40.0%
TGTGAAACATTCATATCCGC+AGG - chr4.2:620924-620943 None:intergenic 40.0%
TGTTGTATGCAATATCCTGC+TGG + chr4.2:619552-619571 MS.gene62622:intron 40.0%
TTAAATATGGCCCTGATGCA+TGG + chr4.2:619220-619239 MS.gene62622:CDS 40.0%
! AAAGCAATTGGCTTAAGCCT+CGG + chr4.2:620242-620261 MS.gene62622:intron 40.0%
! AGGCAATGCATCGATGATTT+CGG - chr4.2:618688-618707 None:intergenic 40.0%
! AGGCTTAAGCCAATTGCTTT+TGG - chr4.2:620242-620261 None:intergenic 40.0%
! ATTCCACATTTGTTGCTGTG+TGG + chr4.2:619334-619353 MS.gene62622:intron 40.0%
! TACGGCTGCCATTTACTTAT+TGG + chr4.2:619822-619841 MS.gene62622:intron 40.0%
! TCTTCCCTCTTCCAATTTTC+AGG + chr4.2:618824-618843 MS.gene62622:CDS 40.0%
! TTGTTGTTGTATGCAACTGC+TGG + chr4.2:620313-620332 MS.gene62622:intron 40.0%
! TTTTCTTTCTTTCCAGAGGC+TGG + chr4.2:621908-621927 MS.gene62622:intron 40.0%
!! GGCTTAAGCCAATTGCTTTT+GGG - chr4.2:620241-620260 None:intergenic 40.0%
!! TGTTAGAAAGAGGGTATTCC+TGG + chr4.2:621240-621259 MS.gene62622:intron 40.0%
AAATTGGAAGAGGGAAGAGG+TGG - chr4.2:618822-618841 None:intergenic 45.0%
ACAGAGCTCATTCCATTGCA+TGG - chr4.2:621741-621760 None:intergenic 45.0%
ACCATGACTGACCTTGATTC+AGG - chr4.2:620024-620043 None:intergenic 45.0%
ATGAATCAAGGTTGGGACGA+TGG - chr4.2:619675-619694 None:intergenic 45.0%
CGACTTCGATCTTAACCCTT+GGG - chr4.2:618734-618753 None:intergenic 45.0%
CTGGACCTATCAAGAGAAAC+AGG - chr4.2:618974-618993 None:intergenic 45.0%
CTGTAATCGTCGTCGATGTA+AGG - chr4.2:618708-618727 None:intergenic 45.0%
CTGTGAAACATTCCTATCCG+AGG - chr4.2:620262-620281 None:intergenic 45.0%
CTTGAAGCTCCACCTTCTTA+CGG + chr4.2:618642-618661 MS.gene62622:CDS 45.0%
GACCTATCAAGAGAAACAGG+AGG - chr4.2:618971-618990 None:intergenic 45.0%
GCATCTCTTCTTCAACGAGA+CGG - chr4.2:618758-618777 None:intergenic 45.0%
GGCTATGCCTAATGATGCAA+AGG - chr4.2:621367-621386 None:intergenic 45.0%
GGTATTCCTGGCATTTCTCT+AGG + chr4.2:621252-621271 MS.gene62622:intron 45.0%
GTATGCAATATCCTGCTGGT+TGG + chr4.2:619556-619575 MS.gene62622:intron 45.0%
TCCTGAATCAAGGTCAGTCA+TGG + chr4.2:620020-620039 MS.gene62622:intron 45.0%
TCGACTTCGATCTTAACCCT+TGG - chr4.2:618735-618754 None:intergenic 45.0%
TGAGAAGAGAAGCAGCAGAA+AGG + chr4.2:621819-621838 MS.gene62622:CDS 45.0%
TGTTGTATGCAACTGCTGGT+TGG + chr4.2:620317-620336 MS.gene62622:intron 45.0%
TTATCATTCCACCAACCAGC+AGG - chr4.2:619570-619589 None:intergenic 45.0%
! AATTGGCTTAAGCCTCGGAT+AGG + chr4.2:620247-620266 MS.gene62622:intron 45.0%
! ATCGGTGCCTCTAGTAAACT+TGG - chr4.2:620503-620522 None:intergenic 45.0%
! TCGGTGCCTCTAGTAAACTT+GGG - chr4.2:620502-620521 None:intergenic 45.0%
!! TGTGCTGTTTCCATGCATCA+GGG - chr4.2:619233-619252 None:intergenic 45.0%
!! TTGGTTTGGTTGCTTGAGTG+AGG + chr4.2:621044-621063 MS.gene62622:intron 45.0%
!! TTGTGCTGTTTCCATGCATC+AGG - chr4.2:619234-619253 None:intergenic 45.0%
!!! GAGGAAATCAGCGGGTTTTT+TGG - chr4.2:618790-618809 None:intergenic 45.0%
AAGCTCCACCTTCTTACGGT+AGG + chr4.2:618646-618665 MS.gene62622:CDS 50.0%
AATCAAGGTTGGGACGATGG+AGG - chr4.2:619672-619691 None:intergenic 50.0%
ACCAGTGCCTCTAGTGAACT+TGG - chr4.2:619724-619743 None:intergenic 50.0%
ATGAGCGTGTAAGAGCTGGT+AGG + chr4.2:618945-618964 MS.gene62622:CDS 50.0%
CAAAACAAAACCCTAGCGGG+CGG - chr4.2:618881-618900 None:intergenic 50.0%
CAGTGCCTCTAGTGAACTTG+GGG - chr4.2:619722-619741 None:intergenic 50.0%
CCAGTGCCTCTAGTGAACTT+GGG - chr4.2:619723-619742 None:intergenic 50.0%
CGGTGCCTCTAGTAAACTTG+GGG - chr4.2:620501-620520 None:intergenic 50.0%
CTAGACCTACCGTAAGAAGG+TGG - chr4.2:618654-618673 None:intergenic 50.0%
GAGTATGAGCGTGTAAGAGC+TGG + chr4.2:618941-618960 MS.gene62622:CDS 50.0%
GGAAGAAGCAGCAGCAGTAA+CGG + chr4.2:618606-618625 MS.gene62622:CDS 50.0%
GGCGACTCCTTTGCATCATT+AGG + chr4.2:621357-621376 MS.gene62622:intron 50.0%
GTAAATGGCAGCCGTAAGAC+CGG - chr4.2:619818-619837 None:intergenic 50.0%
GTACTTGAGCATGACAGCCT+TGG + chr4.2:619528-619547 MS.gene62622:intron 50.0%
GTACTTGAGCTTGACAGCCT+TGG + chr4.2:620290-620309 MS.gene62622:intron 50.0%
TAACAGTGACAAGGGTGGAC+AGG - chr4.2:621629-621648 None:intergenic 50.0%
TCTTTCCAGAGGCTGGAACT+TGG + chr4.2:621915-621934 MS.gene62622:intron 50.0%
TGCCTCTAGTAAACTTGGGG+AGG - chr4.2:620498-620517 None:intergenic 50.0%
TGGCTAGACCTACCGTAAGA+AGG - chr4.2:618657-618676 None:intergenic 50.0%
TTGTCCCCTAGAGAAATGCC+AGG - chr4.2:621261-621280 None:intergenic 50.0%
! GGCCTCCTGTTTCTCTTGAT+AGG + chr4.2:618966-618985 MS.gene62622:CDS 50.0%
! TGCAATATCCTGCTGGTTGG+TGG + chr4.2:619559-619578 MS.gene62622:intron 50.0%
! TGCATCGATGATTTCGGCGT+CGG - chr4.2:618682-618701 None:intergenic 50.0%
! TGTATGCAACTGCTGGTTGG+TGG + chr4.2:620320-620339 MS.gene62622:intron 50.0%
AACTCTTTCTCCGCCCGCTA+GGG + chr4.2:618868-618887 MS.gene62622:intron 55.0%
ACGACGATTACAGCGACCCA+AGG + chr4.2:618715-618734 MS.gene62622:CDS 55.0%
AGCATCCAAGTTCCAGCCTC+TGG - chr4.2:621923-621942 None:intergenic 55.0%
CGACGATTACAGCGACCCAA+GGG + chr4.2:618716-618735 MS.gene62622:CDS 55.0%
GGCCTCCCCAAGTTTACTAG+AGG + chr4.2:620493-620512 MS.gene62622:intron 55.0%
TAACTCTTTCTCCGCCCGCT+AGG + chr4.2:618867-618886 MS.gene62622:intron 55.0%
TGCCTCTAGTGAACTTGGGG+AGG - chr4.2:619719-619738 None:intergenic 55.0%
! CCCAAGTTCACTAGAGGCAC+TGG + chr4.2:619720-619739 MS.gene62622:intron 55.0%
! CGATGATTTCGGCGTCGGAA+TGG - chr4.2:618677-618696 None:intergenic 55.0%
GGCCTCCCCAAGTTCACTAG+AGG + chr4.2:619714-619733 MS.gene62622:intron 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 618594 621981 618594 ID=MS.gene62622
chr4.2 mRNA 618594 621981 618594 ID=MS.gene62622.t1;Parent=MS.gene62622
chr4.2 exon 618594 618845 618594 ID=MS.gene62622.t1.exon1;Parent=MS.gene62622.t1
chr4.2 CDS 618594 618845 618594 ID=cds.MS.gene62622.t1;Parent=MS.gene62622.t1
chr4.2 exon 618920 619095 618920 ID=MS.gene62622.t1.exon2;Parent=MS.gene62622.t1
chr4.2 CDS 618920 619095 618920 ID=cds.MS.gene62622.t1;Parent=MS.gene62622.t1
chr4.2 exon 619197 619280 619197 ID=MS.gene62622.t1.exon3;Parent=MS.gene62622.t1
chr4.2 CDS 619197 619280 619197 ID=cds.MS.gene62622.t1;Parent=MS.gene62622.t1
chr4.2 exon 621542 621611 621542 ID=MS.gene62622.t1.exon4;Parent=MS.gene62622.t1
chr4.2 CDS 621542 621611 621542 ID=cds.MS.gene62622.t1;Parent=MS.gene62622.t1
chr4.2 exon 621707 621840 621707 ID=MS.gene62622.t1.exon5;Parent=MS.gene62622.t1
chr4.2 CDS 621707 621840 621707 ID=cds.MS.gene62622.t1;Parent=MS.gene62622.t1
chr4.2 exon 621924 621981 621924 ID=MS.gene62622.t1.exon6;Parent=MS.gene62622.t1
chr4.2 CDS 621924 621981 621924 ID=cds.MS.gene62622.t1;Parent=MS.gene62622.t1
Gene Sequence

>MS.gene62622

ATGATGGGAGAAGGAAGAAGCAGCAGCAGTAACGGTGATGTTCTGATGCTTGAAGCTCCACCTTCTTACGGTAGGTCTAGCCATTCCGACGCCGAAATCATCGATGCATTGCCTTACATCGACGACGATTACAGCGACCCAAGGGTTAAGATCGAAGTCGACCGTCTCGTTGAAGAAGAGATGCGTCGCAGCTCCAAAAAACCCGCTGATTTCCTCAAAGATTTTCCACCTCTTCCCTCTTCCAATTTTCAGGTAATAATTAACCACACTAACTAACTCTTTCTCCGCCCGCTAGGGTTTTGTTTTGATTTACGATTCTGCTTCAGGATTATCCAATGATTGGTAGAGAGTATGAGCGTGTAAGAGCTGGTAGGCCTCCTGTTTCTCTTGATAGGTCCAGATATGAATTAGAACCACCACCTGTTAATAAATGGAACGATGAAACTGCTTGGAAACTTGCTATTCAACGAGCTCAACGACTTCTTCAATATCAAACCATCAGGTCTTCACTTTAATTTTTTTTTTTTTTTTTTAATAAATGTTTTAAGATTCATATTATCATCTACTTGTTTGTTTAACCAACTAGTTTAAGTTAATATACAGAATGGAAAATTTGGAGTTGTTGCTTAAATATGGCCCTGATGCATGGAAACAGCACAATCAACGATTGGAAGTATACTTGTCAAGGTTCGTTTGTTCATCCAATTATACTGTGGCTCATATTTAGAGTAAACTCTTGAATTCCACATTTGTTGCTGTGTGGATTCAGTATGTTTTGTTCACTATTTGCCTGTACTTGTGCAAATCAAATTTTGCTTATTTCATATATTAGCACATGACATGAACATTCTGACATACCTCAGATTAATATACCTCTTGTTGAATTGGTTCTTGAGAGTGATTCTGCAGATAAGAATGTTTCATGGTAAATATGGTACTTGAGCATGACAGCCTTGGTTGTTGTATGCAATATCCTGCTGGTTGGTGGAATGATAATGTTCTATTTTAATTAATTTTTTTGACTTTAAGACCTTATTAGCTGGAAAAGAAAAAAATCTCTTAAGGAAATCATTAACCTCCATCGTCCCAACCTTGATTCATTAAATATGTTCTTGACTCTGGCCTCCCCAAGTTCACTAGAGGCACTGGTCCATATTTTTCATTTTCATTTTCAAACAAAATACAAAGTCCGTTCCTTTAACTGGCAATGATGATAAAAGGCCGGTCTTACGGCTGCCATTTACTTATTGGTAGTAGATTGATTACTTTCATGTTTAGGGTTTTCTGAGCCAGTTTTATTCACCTTTTTCTTTTAAGTTTTTAATTTTCCCTTTTCAAAACAAGGTTGAAGTTCTACATCTTTGTCTTCAACCATGGGTCATTCTATTTTTTTATGAATAAAGTCAATGTTTTCCTTCTATTTTTCTCCTGAATCAAGGTCAGTCATGGTTGAAATTCTTCATATTTTTCTCGAAGAAATCTAGTGACAAAAATGAGATCAGTGCTCTGCGGTAAATTATTTTGTACCTGTGCATCATTTGCTTACTTATACGTTAGCTAAAGAAAATTCTGACATACCTGCATTTGTTCTGTATGACTGAATTGCACATAGAATACTTTGTTCCTTTCTGTTTTAAATTTCTTCCCAAAAGCAATTGGCTTAAGCCTCGGATAGGAATGTTTCACAGCAAATATGGTACTTGAGCTTGACAGCCTTGGTTGTTGTTGTATGCAACTGCTGGTTGGTGGAATGATAATGTTCTATTTTTAATTCTTGTTTTTTTTTTGGATTTTAAGACCTTATTAGCTACGGAAGAAGAAATCTCTTGAGGAAATCATTGATTTCTACATTCTTCTTAATCGTTTCAACCTTGATTCATTAAATGTGTTCTTGACTCTGGCCTCCCCAAGTTTACTAGAGGCACCGATCCATATTTTTCAGTTTCCTTTTCAAACAAAACACAAAGTATGTTCCTTTAACTGGCAATGATGATAAAAGGCCGGTCTTACGGCTGCCATTTACTTCTATGCTAGTAGATTGATTACTTTCATGTTTAGGGTTTTCTGAGCCAGTTTTATTCACCTTTTTCTTCTAAGTTTTTAATTTTTCCTTTTTTCAAAACAAGGTTGAATTTTCTACTTCTATGTCTTCTATCATGGGTCATTCTATTTTTTAATGAATAAGGTCAATGATTTCCTTCTATTTTTCTCCTGAATCCAAAGGTCAATCATGGTTGAAATTCTTCATATTTTTCTCTTGGAGAAATCTAGTGACAAAAATGAGATCAGTGCACTGTGGTGAATTATTTTGTTGTTGTATGCAATATCCTGCGGATATGAATGTTTCACATAAATATGGTAGTTGAGGTTGACAGCCTTTGATGTGCTCGAGACATATTCCCTTAAGTTCCTAATTAACAAGTATTCAAACCTGACTTTATTCTTCCATATTGGTTTGGTTGCTTGAGTGAGGCTTACTTGAGTGTCTTCTAAAGAAACTATTAGCAGATTCTTTAAGTCTCTTGCTTGGAGCATTTCTTAGTTCAGTGCTTCACAATACTCGTTACCTTGTACATAAAATGCACGTAACATATTATTAATTCCTTAACACATGAGTTTCACCCAATAGGAGAGTGAGTTTTAGAGTGTTAGAAAGAGGGTATTCCTGGCATTTCTCTAGGGGACAAACATCTTTATCCCTAATTGCAGTCTAAGCAACTCCTTTTTCTTCACATTAAGCAACTCCTTTTTCTTCACATAAAAGGCGACTCCTTTGCATCATTAGGCATAGCCCAATGCTCTCAAAATTACTAGTCTTAAGGACTGTATTTCATAGCATTATATCCTTTTTCTTTCATCGATTTTAATTTTGAGGAACTATTGTTCTGTTGTCACTTACATATCTCTTTTCGTATAGCATTGGTTACAGTTGTGTTATCTATTTTCAGAATGCAGAAATTAGCTCAGGAACAAAATGATAAGATTGAAAAAGTTAACCGTGAAAGGAAATATCATCAGGTGAATATGACTTTCCTGTCCACCCTTGTCACTGTTATTTTTAAAATTCTTGTTAAGTTTACTTAAAGTCACATTTTTTTAATAACTATTGTCAGCAAAACACCGCATATGAGCTTAATGCTTTGTCCATGCAATGGAATGAGCTCTGTCAGAAAAATATAGACATCAAAGTTGTGTGCGCTTCAGTTGAAACTCACTTAAATGAACTGAGAAGAGAAGCAGCAGAAAGGTAACTCAGCTTTGTAAATTTTGTTTTTCTTGGCTGATTTCATCTAGTTTTGGTGTGTAATTAGTTTTTTTCTTTCTTTCCAGAGGCTGGAACTTGGATGCTATCACTGAAAATGGCCAACTGGCAAATTCGGAATCATGA
Protein sequence

>MS.gene62622.t1

MMGEGRSSSSNGDVLMLEAPPSYGRSSHSDAEIIDALPYIDDDYSDPRVKIEVDRLVEEEMRRSSKKPADFLKDFPPLPSSNFQDYPMIGREYERVRAGRPPVSLDRSRYELEPPPVNKWNDETAWKLAIQRAQRLLQYQTIRMENLELLLKYGPDAWKQHNQRLEVYLSRMQKLAQEQNDKIEKVNRERKYHQQNTAYELNALSMQWNELCQKNIDIKVVCASVETHLNELRREAAERGWNLDAITENGQLANSES