AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene62679

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62679.t1 MTR_8g105590 99.055 635 6 0 1 635 1 635 0.0 1298
MS.gene62679.t1 MTR_2g036510 67.190 573 186 1 59 629 37 609 0.0 813
MS.gene62679.t1 MTR_4g007980 27.139 409 254 15 238 611 32 431 1.60e-30 125
MS.gene62679.t1 MTR_2g095980 47.273 110 49 1 63 172 158 258 3.34e-22 102
MS.gene62679.t1 MTR_2g095980 35.455 110 62 1 63 172 441 541 6.01e-13 72.8
MS.gene62679.t1 MTR_2g095980 47.273 110 49 1 63 172 158 258 3.68e-22 102
MS.gene62679.t1 MTR_2g095980 35.455 110 62 1 63 172 441 541 5.77e-13 72.8
MS.gene62679.t1 MTR_4g061610 43.636 110 53 1 63 172 165 265 2.91e-21 99.4
MS.gene62679.t1 MTR_4g061610 33.077 130 76 2 63 190 459 579 4.97e-14 76.3
MS.gene62679.t1 MTR_8g070530 35.450 189 99 5 59 246 124 290 4.09e-19 92.4
MS.gene62679.t1 MTR_8g070530 35.455 110 62 1 63 172 412 512 3.70e-12 70.1
MS.gene62679.t1 MTR_1g084120 29.012 324 197 15 311 629 22 317 5.59e-18 88.2
MS.gene62679.t1 MTR_4g109680 29.352 293 156 18 303 572 3 267 2.97e-15 79.7
MS.gene62679.t1 MTR_4g109680 32.000 175 109 6 303 472 115 284 1.41e-12 71.2
MS.gene62679.t1 MTR_1g090740 27.317 205 140 5 291 491 115 314 1.13e-14 77.4
MS.gene62679.t1 MTR_1g090740 25.305 328 204 14 303 614 15 317 5.55e-12 68.9
MS.gene62679.t1 MTR_1g492850 30.721 319 177 20 316 615 20 313 5.26e-14 75.5
MS.gene62679.t1 MTR_1g492850 29.924 264 154 11 365 618 17 259 1.03e-13 74.3
MS.gene62679.t1 MTR_1g492850 30.721 319 177 20 316 615 20 313 5.52e-14 75.1
MS.gene62679.t1 MTR_1g492850 29.924 264 154 11 365 618 17 259 1.42e-13 73.9
MS.gene62679.t1 MTR_4g132120 29.470 302 174 18 320 611 282 554 5.69e-13 72.8
MS.gene62679.t1 MTR_2g095980 35.455 110 62 1 63 172 186 286 8.13e-13 72.0
MS.gene62679.t1 MTR_2g087530 28.638 213 147 4 303 512 42 252 1.18e-12 71.6
MS.gene62679.t1 MTR_2g087530 28.638 213 147 4 303 512 154 364 1.39e-12 71.6
MS.gene62679.t1 MTR_1g089370 25.346 217 157 4 303 517 86 299 6.63e-12 69.3
MS.gene62679.t1 MTR_1g089370 26.866 268 158 11 364 611 26 275 2.14e-11 67.8
MS.gene62679.t1 MTR_7g113200 27.500 200 132 6 298 491 275 467 8.14e-12 68.9
MS.gene62679.t1 MTR_7g113200 26.087 345 210 17 303 630 174 490 7.06e-11 65.9
MS.gene62679.t1 MTR_7g113200 28.931 159 107 4 298 455 275 428 1.22e-11 67.8
MS.gene62679.t1 MTR_5g038420 34.545 110 63 1 63 172 252 352 1.24e-11 67.4
MS.gene62679.t1 MTR_4g050540 27.230 213 150 4 303 512 159 369 8.95e-11 65.9
MS.gene62679.t1 MTR_2g019860 25.610 328 198 16 303 619 76 368 9.12e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62679.t1 AT1G68050 79.775 623 116 4 15 635 5 619 0.0 1021
MS.gene62679.t1 AT5G57360 65.289 605 194 4 33 629 10 606 0.0 804
MS.gene62679.t1 AT5G57360 65.042 595 192 4 33 619 10 596 0.0 789
MS.gene62679.t1 AT2G18915 62.349 579 195 5 59 629 42 605 0.0 740
MS.gene62679.t1 AT2G18915 61.102 581 189 7 59 629 42 595 0.0 716
MS.gene62679.t1 AT1G51550 26.667 405 252 16 243 611 41 436 3.13e-28 119
MS.gene62679.t1 AT5G58140 43.860 114 55 1 59 172 130 234 1.45e-20 96.7
MS.gene62679.t1 AT5G58140 33.871 124 71 2 63 184 390 504 2.06e-12 70.9
MS.gene62679.t1 AT5G58140 43.860 114 55 1 59 172 130 234 2.09e-20 96.7
MS.gene62679.t1 AT5G58140 33.871 124 71 2 63 184 390 504 2.79e-12 70.5
MS.gene62679.t1 AT5G58140 43.860 114 55 1 59 172 130 234 2.83e-20 96.3
MS.gene62679.t1 AT5G58140 33.871 124 71 2 63 184 390 504 3.49e-12 70.1
MS.gene62679.t1 AT5G58140 43.860 114 55 1 59 172 130 234 2.83e-20 96.3
MS.gene62679.t1 AT5G58140 33.871 124 71 2 63 184 390 504 3.49e-12 70.1
MS.gene62679.t1 AT5G58140 43.860 114 55 1 59 172 130 234 2.83e-20 96.3
MS.gene62679.t1 AT5G58140 33.871 124 71 2 63 184 390 504 3.49e-12 70.1
MS.gene62679.t1 AT5G58140 43.860 114 55 1 59 172 130 234 2.83e-20 96.3
MS.gene62679.t1 AT5G58140 33.871 124 71 2 63 184 390 504 3.49e-12 70.1
MS.gene62679.t1 AT5G58140 43.860 114 55 1 59 172 130 234 2.83e-20 96.3
MS.gene62679.t1 AT5G58140 33.871 124 71 2 63 184 390 504 3.49e-12 70.1
MS.gene62679.t1 AT3G45780 40.909 110 56 1 63 172 198 298 2.54e-17 86.7
MS.gene62679.t1 AT3G45780 32.331 133 78 2 63 195 476 596 1.50e-12 71.6
MS.gene62679.t1 AT3G45780 40.909 110 56 1 63 172 198 298 2.54e-17 86.7
MS.gene62679.t1 AT3G45780 32.331 133 78 2 63 195 476 596 1.50e-12 71.6
MS.gene62679.t1 AT2G36360 30.741 270 153 11 365 618 17 268 7.28e-17 84.3
MS.gene62679.t1 AT1G18610 32.056 287 155 18 356 625 3 266 7.73e-17 84.7
MS.gene62679.t1 AT1G18610 28.526 312 162 19 287 571 44 321 1.01e-14 77.8
MS.gene62679.t1 AT1G18610 32.056 287 155 18 356 625 3 266 7.73e-17 84.7
MS.gene62679.t1 AT1G18610 28.526 312 162 19 287 571 44 321 1.01e-14 77.8
MS.gene62679.t1 AT1G03445 28.679 265 164 11 303 557 86 335 2.22e-16 83.6
MS.gene62679.t1 AT1G03445 29.020 255 157 10 303 547 86 326 2.37e-16 83.6
MS.gene62679.t1 AT2G36360 30.189 265 152 11 365 618 17 259 1.02e-15 80.9
MS.gene62679.t1 AT2G36360 28.527 319 186 17 315 615 19 313 1.43e-11 67.8
MS.gene62679.t1 AT2G36360 30.189 265 152 11 365 618 17 259 1.06e-15 80.9
MS.gene62679.t1 AT2G36360 28.527 319 186 17 315 615 19 313 1.49e-11 67.8
MS.gene62679.t1 AT2G36360 30.189 265 152 11 365 618 17 259 1.15e-15 80.5
MS.gene62679.t1 AT2G36360 28.527 319 186 17 315 615 19 313 1.72e-11 67.4
MS.gene62679.t1 AT2G36360 30.189 265 152 11 365 618 17 259 1.15e-15 80.5
MS.gene62679.t1 AT2G36360 28.527 319 186 17 315 615 19 313 1.72e-11 67.4
MS.gene62679.t1 AT2G02710 33.636 110 64 1 63 172 260 360 1.82e-14 76.3
MS.gene62679.t1 AT2G02710 30.464 151 81 6 61 196 36 177 7.71e-11 65.1
MS.gene62679.t1 AT1G74150 28.571 266 152 14 317 572 27 264 4.70e-13 72.8
MS.gene62679.t1 AT1G74150 28.571 266 152 14 317 572 27 264 5.20e-13 72.4
MS.gene62679.t1 AT1G74150 28.571 266 152 14 317 572 27 264 5.23e-13 72.4
MS.gene62679.t1 AT5G04420 27.751 209 137 6 306 505 143 346 5.35e-13 72.4
MS.gene62679.t1 AT5G04420 27.751 209 137 6 306 505 143 346 5.35e-13 72.4
MS.gene62679.t1 AT5G04420 27.751 209 137 6 306 505 143 346 5.35e-13 72.4
MS.gene62679.t1 AT2G02710 33.036 112 64 2 63 172 260 362 7.57e-13 71.2
MS.gene62679.t1 AT2G02710 32.743 113 66 3 61 172 36 139 8.06e-11 65.1
MS.gene62679.t1 AT1G08420 28.638 213 147 4 303 512 175 385 8.24e-13 72.4
MS.gene62679.t1 AT2G27210 28.169 213 148 4 303 512 164 374 9.66e-13 72.0
MS.gene62679.t1 AT1G08420 29.146 199 136 4 303 498 175 371 2.56e-12 70.9
MS.gene62679.t1 AT2G27210 28.643 199 137 4 303 498 164 360 3.24e-12 70.5
MS.gene62679.t1 AT5G27630 29.911 224 133 11 289 496 206 421 6.06e-12 69.3
MS.gene62679.t1 AT5G27630 29.911 224 133 11 289 496 206 421 6.97e-12 68.9
MS.gene62679.t1 AT5G27630 29.911 224 133 11 289 496 206 421 7.88e-12 68.9
MS.gene62679.t1 AT5G27630 29.911 224 133 11 289 496 206 421 1.04e-11 68.2
MS.gene62679.t1 AT2G02710 32.743 113 66 3 61 172 36 139 6.43e-11 64.7
MS.gene62679.t1 AT2G02710 30.464 151 81 6 61 196 36 177 6.69e-11 64.7

Find 182 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAATAGGCTTGTATTATT+TGG 0.172159 4.2:+1412033 MS.gene62679:CDS
TGTGGGAGGGTTATTATATT+TGG 0.207983 4.2:+1412705 MS.gene62679:CDS
GGGCACTCACTCTCAGTTTA+TGG 0.213464 4.2:+1412483 MS.gene62679:CDS
CATCGATTGGTTCTGTTTGC+AGG 0.229475 4.2:+1411791 MS.gene62679:CDS
CTTCATGGACTCCTCCTTCT+AGG 0.236476 4.2:+1412457 MS.gene62679:CDS
CACAATTGAAGGCTCTAAAT+TGG 0.241941 4.2:+1412338 MS.gene62679:CDS
TCTCTTGCTTAAACAGTTCT+TGG 0.261051 4.2:+1412178 MS.gene62679:CDS
ACACTAACCCTTTGCCATTC+TGG 0.266477 4.2:-1412120 None:intergenic
GTGCTTGTGCTGCAGGAAAT+AGG 0.284638 4.2:+1412019 MS.gene62679:CDS
TGGACTCCTCCTTCTAGGTT+AGG 0.286313 4.2:+1412462 MS.gene62679:CDS
CTATGACCCCAAGCAAATTT+AGG 0.308735 4.2:-1412828 None:intergenic
ACCGTCTCAACTATTTCTAT+TGG 0.312062 4.2:+1412752 MS.gene62679:CDS
TGTTTGCTTCGGAAAAGATT+TGG 0.312883 4.2:-1411570 None:intergenic
CAGCCGGTTCTTGCAATATA+GGG 0.313877 4.2:+1411354 MS.gene62679:intron
AAAGTCTTTGAAATCTCAAC+TGG 0.330143 4.2:+1410617 MS.gene62679:CDS
ATATTTGGAGGTTCCATTGC+AGG 0.333382 4.2:+1412720 MS.gene62679:CDS
GCAGCCGGTTCTTGCAATAT+AGG 0.345908 4.2:+1411353 MS.gene62679:intron
ATCCTCCCCGCCCGGCCGAT+GGG 0.346004 4.2:+1412146 MS.gene62679:CDS
AGCTCAGAGGCGGCATCCTT+TGG 0.346721 4.2:+1411384 MS.gene62679:CDS
TGATGTGTTTGTGCTTGATT+TGG 0.349642 4.2:+1412242 MS.gene62679:CDS
GGTTGGAGGGACTAGAGTTT+TGG 0.350009 4.2:+1412860 MS.gene62679:CDS
TGTGGCCCCATCGGCCGGGC+GGG 0.357098 4.2:-1412152 None:intergenic
CTACTCTTGAGGCTGTTTGC+TGG 0.369379 4.2:+1411947 MS.gene62679:CDS
GTGGAGGATCCTCAATGTTC+CGG 0.370289 4.2:+1412797 MS.gene62679:CDS
ATGCAAGTCTCTCTGAAAAC+TGG 0.371445 4.2:-1411616 None:intergenic
CGCCGCCTCTTCCGAGATCT+TGG 0.372949 4.2:+1412304 MS.gene62679:CDS
GTTGGGTAGAAGAAAAGTTC+TGG 0.374493 4.2:-1410530 None:intergenic
ACGGCCCCAACCTAACTTCT+TGG 0.384038 4.2:-1411908 None:intergenic
GGAGAGAAATTCCAACTTCA+TGG 0.384945 4.2:+1412442 MS.gene62679:CDS
ATGAAGCCCTTGGTCGTAAC+TGG 0.387595 4.2:+1410651 MS.gene62679:CDS
CACGTCGGTTTCTCTTCGGC+AGG 0.391277 4.2:-1412777 None:intergenic
GGAACCACCTAAATTTGCTT+GGG 0.393741 4.2:+1412821 MS.gene62679:CDS
GAGTGTGTGGCCCCATCGGC+CGG 0.399734 4.2:-1412157 None:intergenic
TGGACATACCGGGGAGGAAT+GGG 0.400686 4.2:+1412890 MS.gene62679:CDS
TTGGTGTTGGGTGGACATAC+CGG 0.402125 4.2:+1412879 MS.gene62679:CDS
TGGAGGATCCTCAATGTTCC+GGG 0.414753 4.2:+1412798 MS.gene62679:CDS
TGGTGTTGGGTGGACATACC+GGG 0.415143 4.2:+1412880 MS.gene62679:CDS
ACAAAAGATGTTGGTGTTGT+TGG 0.417028 4.2:-1410548 None:intergenic
GGAGTCGTGACACACATAAT+AGG 0.418405 4.2:+1411544 MS.gene62679:CDS
TATCCTCCCCGCCCGGCCGA+TGG 0.425086 4.2:+1412145 MS.gene62679:CDS
GAACTGATGACCAAGAAGTT+AGG 0.427716 4.2:+1411898 MS.gene62679:CDS
CACAGCTCATGCACAATTGA+AGG 0.428020 4.2:+1412327 MS.gene62679:CDS
AATTTCAGTGCTTGTGCTGC+AGG 0.430336 4.2:+1412012 MS.gene62679:CDS
AGTGAGTGCCCTAACCTAGA+AGG 0.434298 4.2:-1412471 None:intergenic
TTGCAAAGAGTGGACACTTA+AGG 0.435187 4.2:+1412535 MS.gene62679:CDS
GCTCGTTCTTTGTCAATTGA+CGG 0.436187 4.2:-1411819 None:intergenic
GCTAAATATTCTCCCAAAAG+TGG 0.437183 4.2:+1411658 MS.gene62679:CDS
TCAGCTTTCTGATGAAGTCT+TGG 0.437833 4.2:+1411729 MS.gene62679:CDS
AGGACAAAGATTCTCATGTT+TGG 0.440239 4.2:+1412507 MS.gene62679:CDS
GTTCAAGTCTATGTTTGCTT+CGG 0.440669 4.2:-1411581 None:intergenic
GGGAGGGTTATTATATTTGG+AGG 0.441072 4.2:+1412708 MS.gene62679:CDS
GGACTCCTCCTTCTAGGTTA+GGG 0.442999 4.2:+1412463 MS.gene62679:CDS
GGTTCATAATCAAAATCAAA+AGG 0.443531 4.2:+1410415 MS.gene62679:CDS
ACTCCATCATCATCATGAAT+TGG 0.445762 4.2:-1411526 None:intergenic
ACTTTGTTGACATAAATGAT+TGG 0.446777 4.2:-1410599 None:intergenic
GTGGCCCCATCGGCCGGGCG+GGG 0.447496 4.2:-1412151 None:intergenic
TAGGTTGGGGCCGTCTGACT+CGG 0.448906 4.2:+1411917 MS.gene62679:CDS
GGTCATAGCACTTGTGTGGT+TGG 0.452644 4.2:+1412843 MS.gene62679:CDS
TGACAAAGAACGAGCACGTT+AGG 0.454258 4.2:+1411827 MS.gene62679:CDS
AGGCTCTAAATTGGTTGTCT+CGG 0.461684 4.2:+1412347 MS.gene62679:CDS
GGCTCTAAATTGGTTGTCTC+GGG 0.463717 4.2:+1412348 MS.gene62679:CDS
TCCTCCCCGCCCGGCCGATG+GGG 0.463860 4.2:+1412147 MS.gene62679:CDS
CCGAGGGATGTTGCATCGAT+TGG 0.463890 4.2:+1411778 MS.gene62679:CDS
AATAGGCTTGTATTATTTGG+AGG 0.465306 4.2:+1412036 MS.gene62679:CDS
AAGCCTAAGTCTGTTGACTA+AGG 0.465707 4.2:-1411500 None:intergenic
GAACGAGCACGTTAGGAAGA+TGG 0.469272 4.2:+1411834 MS.gene62679:CDS
CTTGTATTATTTGGAGGTGA+AGG 0.470299 4.2:+1412042 MS.gene62679:CDS
GCCCCATCGGCCGGGCGGGG+AGG 0.477243 4.2:-1412148 None:intergenic
GATGACCAAGAAGTTAGGTT+GGG 0.477266 4.2:+1411903 MS.gene62679:CDS
CAAAAGATGTTGGTGTTGTT+GGG 0.483296 4.2:-1410547 None:intergenic
GGGAACCACCTAAATTTGCT+TGG 0.486452 4.2:+1412820 MS.gene62679:CDS
CACATCTCTTCGCGCTGCCG+TGG 0.487345 4.2:-1411697 None:intergenic
CTCCCTTAGTCAACAGACTT+AGG 0.488483 4.2:+1411497 MS.gene62679:CDS
CATAGCACTTGTGTGGTTGG+AGG 0.488750 4.2:+1412846 MS.gene62679:CDS
CCTCCACGTCGGTTTCTCTT+CGG 0.490496 4.2:-1412781 None:intergenic
ATTAGAAGATGTCTTGAAGA+AGG 0.500324 4.2:+1411430 MS.gene62679:CDS
GTGGACATACCGGGGAGGAA+TGG 0.501214 4.2:+1412889 MS.gene62679:CDS
CTAATCTCCGACACAACGAC+TGG 0.501353 4.2:-1411412 None:intergenic
GTTGGAATTTCTCTCCATGT+AGG 0.501983 4.2:-1412435 None:intergenic
GGATGCCGCCTCTGAGCTCT+AGG 0.505139 4.2:-1411379 None:intergenic
CTTCTGAATTTCAGAAAGGA+TGG 0.505201 4.2:+1411472 MS.gene62679:CDS
TTGCAGTAAGCATGCCTTGT+GGG 0.506427 4.2:+1412688 MS.gene62679:CDS
TGAAATTCAGAAGTTCCCCT+TGG 0.507034 4.2:-1411462 None:intergenic
GATCCCTATATTGCAAGAAC+CGG 0.508385 4.2:-1411357 None:intergenic
TTTGGTGGATGTGGTAGGCA+AGG 0.511551 4.2:+1412210 MS.gene62679:CDS
GAAGGAGGAGTCCATGAAGT+TGG 0.513595 4.2:-1412453 None:intergenic
CAGTAAGCATGCCTTGTGGG+AGG 0.517765 4.2:+1412691 MS.gene62679:CDS
ACAAAGATTCTCATGTTTGG+TGG 0.518883 4.2:+1412510 MS.gene62679:CDS
GGAACTTCTGAATTTCAGAA+AGG 0.531302 4.2:+1411468 MS.gene62679:CDS
CCGACATGGAAGGAAGTCTT+CGG 0.531353 4.2:+1412276 MS.gene62679:CDS
AGATGGTTTGTCAAAACGCA+TGG 0.532902 4.2:+1411851 MS.gene62679:CDS
CATTCTAGTTGCCTCCATTG+TGG 0.534438 4.2:-1412603 None:intergenic
GCAAATTTAGGTGGTTCCCC+CGG 0.536214 4.2:-1412816 None:intergenic
CAAAGAAGTGACAGGTACAT+TGG 0.538138 4.2:+1411876 MS.gene62679:CDS
ATAGCACTTGTGTGGTTGGA+GGG 0.538751 4.2:+1412847 MS.gene62679:CDS
AAGAGAGTGTGTGGCCCCAT+CGG 0.538839 4.2:-1412161 None:intergenic
TCGGGCGGCTGCACAGATGC+CGG 0.544982 4.2:+1412366 MS.gene62679:CDS
AGGTTGGGGCCGTCTGACTC+GGG 0.545100 4.2:+1411918 MS.gene62679:CDS
GTTCATAATCAAAATCAAAA+GGG 0.549520 4.2:+1410416 MS.gene62679:CDS
GGACACTTAAGGTTAAGATC+AGG 0.550094 4.2:+1412546 MS.gene62679:CDS
CGATTGGTTCTGTTTGCAGG+AGG 0.551211 4.2:+1411794 MS.gene62679:CDS
AGGAGTGGATATGCAGCCTA+TGG 0.551520 4.2:+1412062 MS.gene62679:CDS
CTAGAATGTAGTGCATTCAC+AGG 0.551583 4.2:+1412618 MS.gene62679:CDS
ATCTTACCAGTTACGACCAA+GGG 0.552243 4.2:-1410657 None:intergenic
AAGAAGGTATTGAGTTCCAA+GGG 0.553691 4.2:+1411446 MS.gene62679:CDS
TGATGACCAAGAAGTTAGGT+TGG 0.554354 4.2:+1411902 MS.gene62679:CDS
TATCGTGCTCATGAAGCCCT+TGG 0.555109 4.2:+1410641 MS.gene62679:CDS
TCAGAGGCGGCATCCTTTGG+TGG 0.557577 4.2:+1411387 MS.gene62679:CDS
CATAATCAAAATCAAAAGGG+TGG 0.561242 4.2:+1410419 MS.gene62679:CDS
AAAAGTTACAGTTGGAGGCG+GGG 0.563457 4.2:+1411972 MS.gene62679:CDS
AGTCTCTCTGAAAACTGGAT+AGG 0.564618 4.2:-1411611 None:intergenic
ACGCCAATTCATGATGATGA+TGG 0.567655 4.2:+1411523 MS.gene62679:CDS
CTGTGCCAAGATCTCGGAAG+AGG 0.567792 4.2:-1412309 None:intergenic
CTAAGAATCCAGAATGGCAA+AGG 0.567914 4.2:+1412112 MS.gene62679:CDS
ACGTCGGTTTCTCTTCGGCA+GGG 0.569618 4.2:-1412776 None:intergenic
AGCCTAAGTCTGTTGACTAA+GGG 0.572540 4.2:-1411499 None:intergenic
AGTGTGTGGCCCCATCGGCC+GGG 0.576130 4.2:-1412156 None:intergenic
GGTGGATCCAGTCGTTGTGT+CGG 0.576728 4.2:+1411405 MS.gene62679:CDS
TGCTCAACAGCCGACATGGA+AGG 0.576956 4.2:+1412266 MS.gene62679:CDS
CCGAAGACTTCCTTCCATGT+CGG 0.579808 4.2:-1412276 None:intergenic
AGAACAAAAGTATCATCCAT+AGG 0.580180 4.2:-1412078 None:intergenic
GATGGTTTGTCAAAACGCAT+GGG 0.583838 4.2:+1411852 MS.gene62679:CDS
ATAATCAAAATCAAAAGGGT+GGG 0.584258 4.2:+1410420 MS.gene62679:CDS
CCAATCGATGCAACATCCCT+CGG 0.585601 4.2:-1411778 None:intergenic
TGCCAAGATCTCGGAAGAGG+CGG 0.585827 4.2:-1412306 None:intergenic
AGTAAGCATGCCTTGTGGGA+GGG 0.586759 4.2:+1412692 MS.gene62679:CDS
CGGTGAATGAAGACCTGCAA+TGG 0.588794 4.2:-1412733 None:intergenic
TCCAATAGAAATAGTTGAGA+CGG 0.590072 4.2:-1412753 None:intergenic
GTGTGGCCCCATCGGCCGGG+CGG 0.590319 4.2:-1412153 None:intergenic
CATGAGCTGTGCCAAGATCT+CGG 0.590774 4.2:-1412315 None:intergenic
TAAGAATCCAGAATGGCAAA+GGG 0.592387 4.2:+1412113 MS.gene62679:CDS
GAAAATTATTGTACACTCCA+CGG 0.593713 4.2:+1411680 MS.gene62679:CDS
TGAGTTGCATGAGTTGTGCT+TGG 0.594676 4.2:+1412920 MS.gene62679:CDS
TGGATGCTCAACAGCCGACA+TGG 0.596002 4.2:+1412262 MS.gene62679:CDS
GGTGTTGGGTGGACATACCG+GGG 0.599502 4.2:+1412881 MS.gene62679:CDS
TTTGGTGGACTTGCAAAGAG+TGG 0.599541 4.2:+1412525 MS.gene62679:CDS
ATTCAGCACCCATTCCTCCC+CGG 0.599838 4.2:-1412898 None:intergenic
TAGTAAGCTCCCGAGTCAGA+CGG 0.604022 4.2:-1411927 None:intergenic
ACATGATCTAGTCGAGGAGG+AGG 0.604406 4.2:-1412666 None:intergenic
TCTAAATTGGTTGTCTCGGG+CGG 0.604939 4.2:+1412351 MS.gene62679:CDS
GAAGAAGGTATTGAGTTCCA+AGG 0.605857 4.2:+1411445 MS.gene62679:CDS
ATTATTTGGAGGTGAAGGAG+TGG 0.606129 4.2:+1412047 MS.gene62679:CDS
ATGACCAAGAAGTTAGGTTG+GGG 0.608700 4.2:+1411904 MS.gene62679:CDS
GCATGGGGCAAAGAAGTGAC+AGG 0.615126 4.2:+1411868 MS.gene62679:CDS
TCGGGAGCTTACTACTCTTG+AGG 0.615782 4.2:+1411936 MS.gene62679:CDS
GCACTGAAATTGCAGCGTGA+AGG 0.616623 4.2:-1412000 None:intergenic
CTTAAGGTTAAGATCAGGTG+AGG 0.617307 4.2:+1412551 MS.gene62679:CDS
ACTCACTCTCAGTTTATGGT+AGG 0.619329 4.2:+1412487 MS.gene62679:CDS
GAGTGCCCTAACCTAGAAGG+AGG 0.621134 4.2:-1412468 None:intergenic
TTGGGGTCATAGCACTTGTG+TGG 0.623428 4.2:+1412839 MS.gene62679:CDS
AGTGTGATATCCTCCCCGCC+CGG 0.623636 4.2:+1412138 MS.gene62679:CDS
TCTGATACAACAAAAGATGT+TGG 0.624603 4.2:-1410557 None:intergenic
TGTGTCACTAAGAAGTACTC+CGG 0.630445 4.2:-1412385 None:intergenic
AATCTTACCAGTTACGACCA+AGG 0.632469 4.2:-1410658 None:intergenic
TGTTTAAGCAAGAGAGTGTG+TGG 0.633821 4.2:-1412170 None:intergenic
TTGATGCTAAGAATCCAGAA+TGG 0.634155 4.2:+1412106 MS.gene62679:CDS
GAACCACCTAAATTTGCTTG+GGG 0.636271 4.2:+1412822 MS.gene62679:CDS
GGAGGATCCTCAATGTTCCG+GGG 0.639537 4.2:+1412799 MS.gene62679:CDS
TGACCCCAAGCAAATTTAGG+TGG 0.642462 4.2:-1412825 None:intergenic
ATTGTCACGCTTGACACCGA+GGG 0.643189 4.2:+1411762 MS.gene62679:CDS
TCACAATAGATAATCCTACA+TGG 0.646440 4.2:+1412421 MS.gene62679:CDS
CCGAAGAGAAACCGACGTGG+AGG 0.652010 4.2:+1412781 MS.gene62679:CDS
ATGTAGGATTATCTATTGTG+AGG 0.656684 4.2:-1412419 None:intergenic
AAGCTGAACAACCACAATGG+AGG 0.657091 4.2:+1412592 MS.gene62679:CDS
AATATAATAACCCTCCCACA+AGG 0.660973 4.2:-1412702 None:intergenic
CGGCAGCGCGAAGAGATGTG+TGG 0.661003 4.2:+1411700 MS.gene62679:CDS
ACAACGACTGGATCCACCAA+AGG 0.663685 4.2:-1411400 None:intergenic
GAGGATCCTCAATGTTCCGG+GGG 0.669777 4.2:+1412800 MS.gene62679:CDS
ATGGTTTGTCAAAACGCATG+GGG 0.675604 4.2:+1411853 MS.gene62679:CDS
TAGAAGCTGAACAACCACAA+TGG 0.675759 4.2:+1412589 MS.gene62679:CDS
AAGTCTTTGAAATCTCAACT+GGG 0.680191 4.2:+1410618 MS.gene62679:CDS
ACTGCAACATGATCTAGTCG+AGG 0.685428 4.2:-1412672 None:intergenic
GCAACATGATCTAGTCGAGG+AGG 0.692964 4.2:-1412669 None:intergenic
GGGATCCTAGAGCTCAGAGG+CGG 0.695636 4.2:+1411374 MS.gene62679:CDS
TGAAAACTGGATAGGAAACA+CGG 0.696786 4.2:-1411603 None:intergenic
GTTGCAGTAAGCATGCCTTG+TGG 0.698959 4.2:+1412687 MS.gene62679:CDS
CTGCCGAAGAGAAACCGACG+TGG 0.709608 4.2:+1412778 MS.gene62679:CDS
TATTGTCACGCTTGACACCG+AGG 0.711160 4.2:+1411761 MS.gene62679:CDS
ATAGGGATCCTAGAGCTCAG+AGG 0.719677 4.2:+1411371 MS.gene62679:CDS
GTTGGGTGGACATACCGGGG+AGG 0.725055 4.2:+1412884 MS.gene62679:CDS
AGAAGGTATTGAGTTCCAAG+GGG 0.731475 4.2:+1411447 MS.gene62679:CDS
ACATTGAGGATCCTCCACGT+CGG 0.754895 4.2:-1412792 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAAATTTGAGAAAT+AGG - chr4.2:1410999-1411018 None:intergenic 10.0%
!!! GTTTATTTTTTTTTAGTTTA+AGG - chr4.2:1410795-1410814 None:intergenic 10.0%
!!! TTATCTTTTTTATTGATTTA+AGG + chr4.2:1410716-1410735 MS.gene62679:intron 10.0%
!! AAAGAAATATCTTGTAAAAA+AGG - chr4.2:1411266-1411285 None:intergenic 15.0%
!! TTATTTATTATCCAATAAGA+TGG - chr4.2:1410956-1410975 None:intergenic 15.0%
!!! TTCTTTTAGATATTTTGATT+TGG + chr4.2:1411280-1411299 MS.gene62679:intron 15.0%
!! AAAATGTTAAACCAATAGAA+TGG - chr4.2:1411049-1411068 None:intergenic 20.0%
!! AATACCAAATATAACCAAAA+AGG - chr4.2:1411237-1411256 None:intergenic 20.0%
!! AGTACTTTCCATAATAATTA+AGG + chr4.2:1411106-1411125 MS.gene62679:intron 20.0%
!! GTTCATAATCAAAATCAAAA+GGG + chr4.2:1410416-1410435 MS.gene62679:CDS 20.0%
!! TTGATGAACCTTAATTATTA+TGG - chr4.2:1411117-1411136 None:intergenic 20.0%
!! TTTGCAAAATGAAACAAAAT+TGG - chr4.2:1410885-1410904 None:intergenic 20.0%
!!! AAATAAACCCTTTTATCAAA+CGG + chr4.2:1410807-1410826 MS.gene62679:intron 20.0%
!!! AAGTTTATTTTCCATTCTAT+TGG + chr4.2:1411035-1411054 MS.gene62679:intron 20.0%
!!! CTTTTTTATTGATTTAAGGT+TGG + chr4.2:1410720-1410739 MS.gene62679:intron 20.0%
!!! TACAATAATTTTCCACTTTT+GGG - chr4.2:1411673-1411692 None:intergenic 20.0%
!!! TTTTTTAGTTTAAGGAAAGT+AGG - chr4.2:1410787-1410806 None:intergenic 20.0%
! ACTTTGTTGACATAAATGAT+TGG - chr4.2:1410602-1410621 None:intergenic 25.0%
! ATAATCAAAATCAAAAGGGT+GGG + chr4.2:1410420-1410439 MS.gene62679:CDS 25.0%
! GGAATCAAAATTAGAAAGAA+TGG - chr4.2:1410925-1410944 None:intergenic 25.0%
! GGTTCATAATCAAAATCAAA+AGG + chr4.2:1410415-1410434 MS.gene62679:CDS 25.0%
!! ATTTTCACCGTTTGATAAAA+GGG - chr4.2:1410817-1410836 None:intergenic 25.0%
!! GAATGGATTCTATAAAAATG+TGG - chr4.2:1410908-1410927 None:intergenic 25.0%
!! GTACAATAATTTTCCACTTT+TGG - chr4.2:1411674-1411693 None:intergenic 25.0%
!! TCTTGCATCATAATTTTGTT+GGG + chr4.2:1410691-1410710 MS.gene62679:intron 25.0%
!! TTCTTGCATCATAATTTTGT+TGG + chr4.2:1410690-1410709 MS.gene62679:intron 25.0%
!!! AAGAAAAGTTCTGGTTTTAA+TGG - chr4.2:1410524-1410543 None:intergenic 25.0%
!!! AGAAATTCTAAAGCAATTAG+AGG - chr4.2:1411326-1411345 None:intergenic 25.0%
AATAGGCTTGTATTATTTGG+AGG + chr4.2:1412036-1412055 MS.gene62679:CDS 30.0%
ACTCTCATAGAATCAATGAT+AGG + chr4.2:1411204-1411223 MS.gene62679:intron 30.0%
ATGTAGGATTATCTATTGTG+AGG - chr4.2:1412422-1412441 None:intergenic 30.0%
ATTAGAAGATGTCTTGAAGA+AGG + chr4.2:1411430-1411449 MS.gene62679:CDS 30.0%
CAACATAGTATAGATCTGAA+AGG - chr4.2:1410849-1410868 None:intergenic 30.0%
CATAATCAAAATCAAAAGGG+TGG + chr4.2:1410419-1410438 MS.gene62679:CDS 30.0%
CTCTCATAGAATCAATGATA+GGG + chr4.2:1411205-1411224 MS.gene62679:intron 30.0%
GAAAATTATTGTACACTCCA+CGG + chr4.2:1411680-1411699 MS.gene62679:CDS 30.0%
GGAAATAGGCTTGTATTATT+TGG + chr4.2:1412033-1412052 MS.gene62679:CDS 30.0%
TAAAAACGAAGATGAAGAAG+AGG + chr4.2:1410394-1410413 MS.gene62679:CDS 30.0%
TAGTATAGATCTGAAAGGAA+TGG - chr4.2:1410844-1410863 None:intergenic 30.0%
TCACAATAGATAATCCTACA+TGG + chr4.2:1412421-1412440 MS.gene62679:CDS 30.0%
TCCAATAGAAATAGTTGAGA+CGG - chr4.2:1412756-1412775 None:intergenic 30.0%
TCTGATACAACAAAAGATGT+TGG - chr4.2:1410560-1410579 None:intergenic 30.0%
! CATTTTCACCGTTTGATAAA+AGG - chr4.2:1410818-1410837 None:intergenic 30.0%
! CTTGCATCATAATTTTGTTG+GGG + chr4.2:1410692-1410711 MS.gene62679:intron 30.0%
!! AAAGTCTTTGAAATCTCAAC+TGG + chr4.2:1410617-1410636 MS.gene62679:CDS 30.0%
!! AAGTCTTTGAAATCTCAACT+GGG + chr4.2:1410618-1410637 MS.gene62679:CDS 30.0%
!! AGAACAAAAGTATCATCCAT+AGG - chr4.2:1412081-1412100 None:intergenic 30.0%
!! ATTTTGACAACATGGTTACT+TGG + chr4.2:1411064-1411083 MS.gene62679:intron 30.0%
!! GGTTTAACATTTTGACAACA+TGG + chr4.2:1411056-1411075 MS.gene62679:intron 30.0%
!!! CTGTCCTTTTTGGTTATATT+TGG + chr4.2:1411230-1411249 MS.gene62679:intron 30.0%
AAAAAAGTTACAGTTGGAGG+CGG + chr4.2:1411970-1411989 MS.gene62679:CDS 35.0%
AATATAATAACCCTCCCACA+AGG - chr4.2:1412705-1412724 None:intergenic 35.0%
ACAAAGATTCTCATGTTTGG+TGG + chr4.2:1412510-1412529 MS.gene62679:CDS 35.0%
ACTCCATCATCATCATGAAT+TGG - chr4.2:1411529-1411548 None:intergenic 35.0%
AGGACAAAGATTCTCATGTT+TGG + chr4.2:1412507-1412526 MS.gene62679:CDS 35.0%
ATCCAATAAGATGGAAGCTA+GGG - chr4.2:1410947-1410966 None:intergenic 35.0%
CTTCTGAATTTCAGAAAGGA+TGG + chr4.2:1411472-1411491 MS.gene62679:CDS 35.0%
CTTGTATTATTTGGAGGTGA+AGG + chr4.2:1412042-1412061 MS.gene62679:CDS 35.0%
GCTAAATATTCTCCCAAAAG+TGG + chr4.2:1411658-1411677 MS.gene62679:CDS 35.0%
GGAACTTCTGAATTTCAGAA+AGG + chr4.2:1411468-1411487 MS.gene62679:CDS 35.0%
GTTCAAGTCTATGTTTGCTT+CGG - chr4.2:1411584-1411603 None:intergenic 35.0%
TAAGAATCCAGAATGGCAAA+GGG + chr4.2:1412113-1412132 MS.gene62679:CDS 35.0%
TATCCAATAAGATGGAAGCT+AGG - chr4.2:1410948-1410967 None:intergenic 35.0%
TCTCTTGCTTAAACAGTTCT+TGG + chr4.2:1412178-1412197 MS.gene62679:CDS 35.0%
TGAAAACTGGATAGGAAACA+CGG - chr4.2:1411606-1411625 None:intergenic 35.0%
TGATGTGTTTGTGCTTGATT+TGG + chr4.2:1412242-1412261 MS.gene62679:CDS 35.0%
TGCTGGAAAAAAGTTACAGT+TGG + chr4.2:1411964-1411983 MS.gene62679:CDS 35.0%
TGGAAAAAAGTTACAGTTGG+AGG + chr4.2:1411967-1411986 MS.gene62679:CDS 35.0%
TGTGGGAGGGTTATTATATT+TGG + chr4.2:1412705-1412724 MS.gene62679:CDS 35.0%
TGTTTGCTTCGGAAAAGATT+TGG - chr4.2:1411573-1411592 None:intergenic 35.0%
TTGATGCTAAGAATCCAGAA+TGG + chr4.2:1412106-1412125 MS.gene62679:CDS 35.0%
!! AAGAAGGTATTGAGTTCCAA+GGG + chr4.2:1411446-1411465 MS.gene62679:CDS 35.0%
!! ACAAAAGATGTTGGTGTTGT+TGG - chr4.2:1410551-1410570 None:intergenic 35.0%
!! ACCGTCTCAACTATTTCTAT+TGG + chr4.2:1412752-1412771 MS.gene62679:CDS 35.0%
!! AGTTCTTGGCTAGTTGTTTT+TGG + chr4.2:1412192-1412211 MS.gene62679:CDS 35.0%
!! CAAAAGATGTTGGTGTTGTT+GGG - chr4.2:1410550-1410569 None:intergenic 35.0%
!! CACAATTGAAGGCTCTAAAT+TGG + chr4.2:1412338-1412357 MS.gene62679:CDS 35.0%
!! GAATTTCTTTTGTTTGCAGC+CGG + chr4.2:1411338-1411357 MS.gene62679:intron 35.0%
AAAAAGTTACAGTTGGAGGC+GGG + chr4.2:1411971-1411990 MS.gene62679:CDS 40.0%
AATCTTACCAGTTACGACCA+AGG - chr4.2:1410661-1410680 None:intergenic 40.0%
ACTCACTCTCAGTTTATGGT+AGG + chr4.2:1412487-1412506 MS.gene62679:CDS 40.0%
ATATTTGGAGGTTCCATTGC+AGG + chr4.2:1412720-1412739 MS.gene62679:CDS 40.0%
ATCTTACCAGTTACGACCAA+GGG - chr4.2:1410660-1410679 None:intergenic 40.0%
ATTATTTGGAGGTGAAGGAG+TGG + chr4.2:1412047-1412066 MS.gene62679:CDS 40.0%
CAAAGAAGTGACAGGTACAT+TGG + chr4.2:1411876-1411895 MS.gene62679:CDS 40.0%
CTAAGAATCCAGAATGGCAA+AGG + chr4.2:1412112-1412131 MS.gene62679:CDS 40.0%
CTAGAATGTAGTGCATTCAC+AGG + chr4.2:1412618-1412637 MS.gene62679:CDS 40.0%
CTATGACCCCAAGCAAATTT+AGG - chr4.2:1412831-1412850 None:intergenic 40.0%
CTTAAGGTTAAGATCAGGTG+AGG + chr4.2:1412551-1412570 MS.gene62679:CDS 40.0%
GAACTGATGACCAAGAAGTT+AGG + chr4.2:1411898-1411917 MS.gene62679:CDS 40.0%
GATCCCTATATTGCAAGAAC+CGG - chr4.2:1411360-1411379 None:intergenic 40.0%
GATGACCAAGAAGTTAGGTT+GGG + chr4.2:1411903-1411922 MS.gene62679:CDS 40.0%
GCTCGTTCTTTGTCAATTGA+CGG - chr4.2:1411822-1411841 None:intergenic 40.0%
GGACACTTAAGGTTAAGATC+AGG + chr4.2:1412546-1412565 MS.gene62679:CDS 40.0%
GGAGAGAAATTCCAACTTCA+TGG + chr4.2:1412442-1412461 MS.gene62679:CDS 40.0%
GGGAGGGTTATTATATTTGG+AGG + chr4.2:1412708-1412727 MS.gene62679:CDS 40.0%
GTTGGAATTTCTCTCCATGT+AGG - chr4.2:1412438-1412457 None:intergenic 40.0%
GTTGGGTAGAAGAAAAGTTC+TGG - chr4.2:1410533-1410552 None:intergenic 40.0%
TAGAAGCTGAACAACCACAA+TGG + chr4.2:1412589-1412608 MS.gene62679:CDS 40.0%
TCAGCTTTCTGATGAAGTCT+TGG + chr4.2:1411729-1411748 MS.gene62679:CDS 40.0%
TCCAATAAGATGGAAGCTAG+GGG - chr4.2:1410946-1410965 None:intergenic 40.0%
TGAAATTCAGAAGTTCCCCT+TGG - chr4.2:1411465-1411484 None:intergenic 40.0%
TGATGACCAAGAAGTTAGGT+TGG + chr4.2:1411902-1411921 MS.gene62679:CDS 40.0%
TTGCAAAGAGTGGACACTTA+AGG + chr4.2:1412535-1412554 MS.gene62679:CDS 40.0%
! AAGCCTAAGTCTGTTGACTA+AGG - chr4.2:1411503-1411522 None:intergenic 40.0%
! ACGCCAATTCATGATGATGA+TGG + chr4.2:1411523-1411542 MS.gene62679:CDS 40.0%
! AGATGGTTTGTCAAAACGCA+TGG + chr4.2:1411851-1411870 MS.gene62679:CDS 40.0%
! AGCCTAAGTCTGTTGACTAA+GGG - chr4.2:1411502-1411521 None:intergenic 40.0%
! AGTCTCTCTGAAAACTGGAT+AGG - chr4.2:1411614-1411633 None:intergenic 40.0%
! ATGACCAAGAAGTTAGGTTG+GGG + chr4.2:1411904-1411923 MS.gene62679:CDS 40.0%
! ATGCAAGTCTCTCTGAAAAC+TGG - chr4.2:1411619-1411638 None:intergenic 40.0%
! ATGGTTTGTCAAAACGCATG+GGG + chr4.2:1411853-1411872 MS.gene62679:CDS 40.0%
! GAACCACCTAAATTTGCTTG+GGG + chr4.2:1412822-1412841 MS.gene62679:CDS 40.0%
! GATGGTTTGTCAAAACGCAT+GGG + chr4.2:1411852-1411871 MS.gene62679:CDS 40.0%
! GGAACCACCTAAATTTGCTT+GGG + chr4.2:1412821-1412840 MS.gene62679:CDS 40.0%
! TGATAGGGAACTGTCCTTTT+TGG + chr4.2:1411220-1411239 MS.gene62679:intron 40.0%
! TGTTTAAGCAAGAGAGTGTG+TGG - chr4.2:1412173-1412192 None:intergenic 40.0%
!! AGAAGGTATTGAGTTCCAAG+GGG + chr4.2:1411447-1411466 MS.gene62679:CDS 40.0%
!! AGGCTCTAAATTGGTTGTCT+CGG + chr4.2:1412347-1412366 MS.gene62679:CDS 40.0%
!! GAAGAAGGTATTGAGTTCCA+AGG + chr4.2:1411445-1411464 MS.gene62679:CDS 40.0%
!! TGTGTCACTAAGAAGTACTC+CGG - chr4.2:1412388-1412407 None:intergenic 40.0%
!!! CTAGTTGTTTTTGGTGGATG+TGG + chr4.2:1412201-1412220 MS.gene62679:CDS 40.0%
!!! TCTTGGCTAGTTGTTTTTGG+TGG + chr4.2:1412195-1412214 MS.gene62679:CDS 40.0%
!!! TTGTTTTTGGTGGATGTGGT+AGG + chr4.2:1412205-1412224 MS.gene62679:CDS 40.0%
AAAAGTTACAGTTGGAGGCG+GGG + chr4.2:1411972-1411991 MS.gene62679:CDS 45.0%
AAGCTGAACAACCACAATGG+AGG + chr4.2:1412592-1412611 MS.gene62679:CDS 45.0%
AATTTCAGTGCTTGTGCTGC+AGG + chr4.2:1412012-1412031 MS.gene62679:CDS 45.0%
ACACTAACCCTTTGCCATTC+TGG - chr4.2:1412123-1412142 None:intergenic 45.0%
ACTGCAACATGATCTAGTCG+AGG - chr4.2:1412675-1412694 None:intergenic 45.0%
ATAGCACTTGTGTGGTTGGA+GGG + chr4.2:1412847-1412866 MS.gene62679:CDS 45.0%
CACAGCTCATGCACAATTGA+AGG + chr4.2:1412327-1412346 MS.gene62679:CDS 45.0%
CTCCCTTAGTCAACAGACTT+AGG + chr4.2:1411497-1411516 MS.gene62679:CDS 45.0%
GGAGTCGTGACACACATAAT+AGG + chr4.2:1411544-1411563 MS.gene62679:CDS 45.0%
TCCCCTAGCTTCCATCTTAT+TGG + chr4.2:1410942-1410961 MS.gene62679:intron 45.0%
TCTAAATTGGTTGTCTCGGG+CGG + chr4.2:1412351-1412370 MS.gene62679:CDS 45.0%
TGACAAAGAACGAGCACGTT+AGG + chr4.2:1411827-1411846 MS.gene62679:CDS 45.0%
TGACCCCAAGCAAATTTAGG+TGG - chr4.2:1412828-1412847 None:intergenic 45.0%
TGAGTTGCATGAGTTGTGCT+TGG + chr4.2:1412920-1412939 MS.gene62679:CDS 45.0%
TTGCAGTAAGCATGCCTTGT+GGG + chr4.2:1412688-1412707 MS.gene62679:CDS 45.0%
! CAGCCGGTTCTTGCAATATA+GGG + chr4.2:1411354-1411373 MS.gene62679:intron 45.0%
! CATTCTAGTTGCCTCCATTG+TGG - chr4.2:1412606-1412625 None:intergenic 45.0%
! GGGAACCACCTAAATTTGCT+TGG + chr4.2:1412820-1412839 MS.gene62679:CDS 45.0%
!! AGGGACTAGAGTTTTGGTGT+TGG + chr4.2:1412866-1412885 MS.gene62679:CDS 45.0%
!! CATCGATTGGTTCTGTTTGC+AGG + chr4.2:1411791-1411810 MS.gene62679:CDS 45.0%
!! GGCTCTAAATTGGTTGTCTC+GGG + chr4.2:1412348-1412367 MS.gene62679:CDS 45.0%
!! TTTGGTGGACTTGCAAAGAG+TGG + chr4.2:1412525-1412544 MS.gene62679:CDS 45.0%
!!! ACTAGAGTTTTGGTGTTGGG+TGG + chr4.2:1412870-1412889 MS.gene62679:CDS 45.0%
!!! GGGACTAGAGTTTTGGTGTT+GGG + chr4.2:1412867-1412886 MS.gene62679:CDS 45.0%
ACAACGACTGGATCCACCAA+AGG - chr4.2:1411403-1411422 None:intergenic 50.0%
ACATGATCTAGTCGAGGAGG+AGG - chr4.2:1412669-1412688 None:intergenic 50.0%
ACATTGAGGATCCTCCACGT+CGG - chr4.2:1412795-1412814 None:intergenic 50.0%
AGGAGTGGATATGCAGCCTA+TGG + chr4.2:1412062-1412081 MS.gene62679:CDS 50.0%
AGTAAGCATGCCTTGTGGGA+GGG + chr4.2:1412692-1412711 MS.gene62679:CDS 50.0%
AGTGAGTGCCCTAACCTAGA+AGG - chr4.2:1412474-1412493 None:intergenic 50.0%
ATAGGGATCCTAGAGCTCAG+AGG + chr4.2:1411371-1411390 MS.gene62679:CDS 50.0%
ATGAAGCCCTTGGTCGTAAC+TGG + chr4.2:1410651-1410670 MS.gene62679:CDS 50.0%
ATTGTCACGCTTGACACCGA+GGG + chr4.2:1411762-1411781 MS.gene62679:CDS 50.0%
CATAGCACTTGTGTGGTTGG+AGG + chr4.2:1412846-1412865 MS.gene62679:CDS 50.0%
CATGAGCTGTGCCAAGATCT+CGG - chr4.2:1412318-1412337 None:intergenic 50.0%
CCAATCGATGCAACATCCCT+CGG - chr4.2:1411781-1411800 None:intergenic 50.0%
CCGAAGACTTCCTTCCATGT+CGG - chr4.2:1412279-1412298 None:intergenic 50.0%
CCGACATGGAAGGAAGTCTT+CGG + chr4.2:1412276-1412295 MS.gene62679:CDS 50.0%
CGGTGAATGAAGACCTGCAA+TGG - chr4.2:1412736-1412755 None:intergenic 50.0%
CTAATCTCCGACACAACGAC+TGG - chr4.2:1411415-1411434 None:intergenic 50.0%
CTACTCTTGAGGCTGTTTGC+TGG + chr4.2:1411947-1411966 MS.gene62679:CDS 50.0%
CTTCATGGACTCCTCCTTCT+AGG + chr4.2:1412457-1412476 MS.gene62679:CDS 50.0%
GAACGAGCACGTTAGGAAGA+TGG + chr4.2:1411834-1411853 MS.gene62679:CDS 50.0%
GAAGGAGGAGTCCATGAAGT+TGG - chr4.2:1412456-1412475 None:intergenic 50.0%
GCAAATTTAGGTGGTTCCCC+CGG - chr4.2:1412819-1412838 None:intergenic 50.0%
GCAACATGATCTAGTCGAGG+AGG - chr4.2:1412672-1412691 None:intergenic 50.0%
GCACTGAAATTGCAGCGTGA+AGG - chr4.2:1412003-1412022 None:intergenic 50.0%
GGACTCCTCCTTCTAGGTTA+GGG + chr4.2:1412463-1412482 MS.gene62679:CDS 50.0%
GGGCACTCACTCTCAGTTTA+TGG + chr4.2:1412483-1412502 MS.gene62679:CDS 50.0%
GGTCATAGCACTTGTGTGGT+TGG + chr4.2:1412843-1412862 MS.gene62679:CDS 50.0%
GTGCTTGTGCTGCAGGAAAT+AGG + chr4.2:1412019-1412038 MS.gene62679:CDS 50.0%
GTGGAGGATCCTCAATGTTC+CGG + chr4.2:1412797-1412816 MS.gene62679:CDS 50.0%
GTTGCAGTAAGCATGCCTTG+TGG + chr4.2:1412687-1412706 MS.gene62679:CDS 50.0%
TAGTAAGCTCCCGAGTCAGA+CGG - chr4.2:1411930-1411949 None:intergenic 50.0%
TATCGTGCTCATGAAGCCCT+TGG + chr4.2:1410641-1410660 MS.gene62679:CDS 50.0%
TATTGTCACGCTTGACACCG+AGG + chr4.2:1411761-1411780 MS.gene62679:CDS 50.0%
TCGGGAGCTTACTACTCTTG+AGG + chr4.2:1411936-1411955 MS.gene62679:CDS 50.0%
TGGACTCCTCCTTCTAGGTT+AGG + chr4.2:1412462-1412481 MS.gene62679:CDS 50.0%
TGGAGGATCCTCAATGTTCC+GGG + chr4.2:1412798-1412817 MS.gene62679:CDS 50.0%
TTGGGGTCATAGCACTTGTG+TGG + chr4.2:1412839-1412858 MS.gene62679:CDS 50.0%
! GCAGCCGGTTCTTGCAATAT+AGG + chr4.2:1411353-1411372 MS.gene62679:intron 50.0%
! GGTTGGAGGGACTAGAGTTT+TGG + chr4.2:1412860-1412879 MS.gene62679:CDS 50.0%
! TTTGGTGGATGTGGTAGGCA+AGG + chr4.2:1412210-1412229 MS.gene62679:CDS 50.0%
!! CGATTGGTTCTGTTTGCAGG+AGG + chr4.2:1411794-1411813 MS.gene62679:CDS 50.0%
!! TTGGTGTTGGGTGGACATAC+CGG + chr4.2:1412879-1412898 MS.gene62679:CDS 50.0%
ACGGCCCCAACCTAACTTCT+TGG - chr4.2:1411911-1411930 None:intergenic 55.0%
ATTCAGCACCCATTCCTCCC+CGG - chr4.2:1412901-1412920 None:intergenic 55.0%
CAGTAAGCATGCCTTGTGGG+AGG + chr4.2:1412691-1412710 MS.gene62679:CDS 55.0%
CTGTGCCAAGATCTCGGAAG+AGG - chr4.2:1412312-1412331 None:intergenic 55.0%
GAGGATCCTCAATGTTCCGG+GGG + chr4.2:1412800-1412819 MS.gene62679:CDS 55.0%
GAGTGCCCTAACCTAGAAGG+AGG - chr4.2:1412471-1412490 None:intergenic 55.0%
GCATGGGGCAAAGAAGTGAC+AGG + chr4.2:1411868-1411887 MS.gene62679:CDS 55.0%
GGAGGATCCTCAATGTTCCG+GGG + chr4.2:1412799-1412818 MS.gene62679:CDS 55.0%
GGTGGATCCAGTCGTTGTGT+CGG + chr4.2:1411405-1411424 MS.gene62679:CDS 55.0%
TGCCAAGATCTCGGAAGAGG+CGG - chr4.2:1412309-1412328 None:intergenic 55.0%
TGCTCAACAGCCGACATGGA+AGG + chr4.2:1412266-1412285 MS.gene62679:CDS 55.0%
TGGACATACCGGGGAGGAAT+GGG + chr4.2:1412890-1412909 MS.gene62679:CDS 55.0%
TGGATGCTCAACAGCCGACA+TGG + chr4.2:1412262-1412281 MS.gene62679:CDS 55.0%
! AAGAGAGTGTGTGGCCCCAT+CGG - chr4.2:1412164-1412183 None:intergenic 55.0%
! CCGAGGGATGTTGCATCGAT+TGG + chr4.2:1411778-1411797 MS.gene62679:CDS 55.0%
! TGGTGTTGGGTGGACATACC+GGG + chr4.2:1412880-1412899 MS.gene62679:CDS 55.0%
!! ACGTCGGTTTCTCTTCGGCA+GGG - chr4.2:1412779-1412798 None:intergenic 55.0%
!! CCTCCACGTCGGTTTCTCTT+CGG - chr4.2:1412784-1412803 None:intergenic 55.0%
AGCTCAGAGGCGGCATCCTT+TGG + chr4.2:1411384-1411403 MS.gene62679:CDS 60.0%
AGTGTGATATCCTCCCCGCC+CGG + chr4.2:1412138-1412157 MS.gene62679:CDS 60.0%
CCGAAGAGAAACCGACGTGG+AGG + chr4.2:1412781-1412800 MS.gene62679:CDS 60.0%
CTGCCGAAGAGAAACCGACG+TGG + chr4.2:1412778-1412797 MS.gene62679:CDS 60.0%
GGGATCCTAGAGCTCAGAGG+CGG + chr4.2:1411374-1411393 MS.gene62679:CDS 60.0%
GTGGACATACCGGGGAGGAA+TGG + chr4.2:1412889-1412908 MS.gene62679:CDS 60.0%
GTGGTTCCCCCGGAACATTG+AGG - chr4.2:1412809-1412828 None:intergenic 60.0%
TCAGAGGCGGCATCCTTTGG+TGG + chr4.2:1411387-1411406 MS.gene62679:CDS 60.0%
! GGTGTTGGGTGGACATACCG+GGG + chr4.2:1412881-1412900 MS.gene62679:CDS 60.0%
! TAGGTTGGGGCCGTCTGACT+CGG + chr4.2:1411917-1411936 MS.gene62679:CDS 60.0%
!! CACGTCGGTTTCTCTTCGGC+AGG - chr4.2:1412780-1412799 None:intergenic 60.0%
AGGTTGGGGCCGTCTGACTC+GGG + chr4.2:1411918-1411937 MS.gene62679:CDS 65.0%
CACATCTCTTCGCGCTGCCG+TGG - chr4.2:1411700-1411719 None:intergenic 65.0%
CGCCGCCTCTTCCGAGATCT+TGG + chr4.2:1412304-1412323 MS.gene62679:CDS 65.0%
CGGCAGCGCGAAGAGATGTG+TGG + chr4.2:1411700-1411719 MS.gene62679:CDS 65.0%
GGATGCCGCCTCTGAGCTCT+AGG - chr4.2:1411382-1411401 None:intergenic 65.0%
GTTGGGTGGACATACCGGGG+AGG + chr4.2:1412884-1412903 MS.gene62679:CDS 65.0%
AGTGTGTGGCCCCATCGGCC+GGG - chr4.2:1412159-1412178 None:intergenic 70.0%
GAGTGTGTGGCCCCATCGGC+CGG - chr4.2:1412160-1412179 None:intergenic 70.0%
TCGGGCGGCTGCACAGATGC+CGG + chr4.2:1412366-1412385 MS.gene62679:CDS 70.0%
ATCCTCCCCGCCCGGCCGAT+GGG + chr4.2:1412146-1412165 MS.gene62679:CDS 75.0%
TATCCTCCCCGCCCGGCCGA+TGG + chr4.2:1412145-1412164 MS.gene62679:CDS 75.0%
! GTGTGGCCCCATCGGCCGGG+CGG - chr4.2:1412156-1412175 None:intergenic 80.0%
! TCCTCCCCGCCCGGCCGATG+GGG + chr4.2:1412147-1412166 MS.gene62679:CDS 80.0%
! TGTGGCCCCATCGGCCGGGC+GGG - chr4.2:1412155-1412174 None:intergenic 80.0%
! GTGGCCCCATCGGCCGGGCG+GGG - chr4.2:1412154-1412173 None:intergenic 85.0%
! GCCCCATCGGCCGGGCGGGG+AGG - chr4.2:1412151-1412170 None:intergenic 90.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 1410377 1412968 1410377 ID=MS.gene62679
chr4.2 mRNA 1410377 1412968 1410377 ID=MS.gene62679.t1;Parent=MS.gene62679
chr4.2 exon 1410377 1410672 1410377 ID=MS.gene62679.t1.exon1;Parent=MS.gene62679.t1
chr4.2 CDS 1410377 1410672 1410377 ID=cds.MS.gene62679.t1;Parent=MS.gene62679.t1
chr4.2 exon 1411357 1412968 1411357 ID=MS.gene62679.t1.exon2;Parent=MS.gene62679.t1
chr4.2 CDS 1411357 1412968 1411357 ID=cds.MS.gene62679.t1;Parent=MS.gene62679.t1
Gene Sequence

>MS.gene62679

ATGGCTATGGCAAGAGATAAAAACGAAGATGAAGAAGAGGTTCATAATCAAAATCAAAAGGGTGGGAAGAGATTGAAATGCATGAACATGAAGAAGAATGAACAAGAAGAAAAGCAAGTAGTAGATGAAGAAGAAAGTGAGCTTCCATTAAAACCAGAACTTTTCTTCTACCCAACAACACCAACATCTTTTGTTGTATCAGATGCACTTGAATCAGATTTTCCAATCATTTATGTCAACAAAGTCTTTGAAATCTCAACTGGGTATCGTGCTCATGAAGCCCTTGGTCGTAACTGGTAAGATTTTTTTTCATTTCTTGCATCATAATTTTGTTGGGGTTTATCTTTTTTATTGATTTAAGGTTGGAATTTATATAAAGTTTATAAATTTACTTAATTTAATTATGACCTACTTTCCTTAAACTAAAAAAAAATAAACCCTTTTATCAAACGGTGAAAATGATTCCATTCCTTTCAGATCTATACTATGTTGAGATTTTATAGTGCCAATTTTGTTTCATTTTGCAAACCACATTTTTATAGAATCCATTCTTTCTAATTTTGATTCCCCTAGCTTCCATCTTATTGGATAATAAATAAATGTTCTTTTTATAAAGTTTCCTATTTCTCAAATTTTATTTTTATGATTTCACAATTTGAAGTTTATTTTCCATTCTATTGGTTTAACATTTTGACAACATGGTTACTTGGTAAACATTGTGATGTGCTTAGTACTTTCCATAATAATTAAGGTTCATCAATTGATTGTGCTTGTGAATTGACTACTAGTGAAAATATTTTGTTCTGAAGATTTTGATCAAAGATGTGACTCTCATAGAATCAATGATAGGGAACTGTCCTTTTTGGTTATATTTGGTATTTTCATTCCTTTTTTACAAGATATTTCTTTTAGATATTTTGATTTGGTTCACTTTTGACAAAATATACCTCTAATTGCTTTAGAATTTCTTTTGTTTGCAGCCGGTTCTTGCAATATAGGGATCCTAGAGCTCAGAGGCGGCATCCTTTGGTGGATCCAGTCGTTGTGTCGGAGATTAGAAGATGTCTTGAAGAAGGTATTGAGTTCCAAGGGGAACTTCTGAATTTCAGAAAGGATGGCACTCCCTTAGTCAACAGACTTAGGCTTACGCCAATTCATGATGATGATGGAGTCGTGACACACATAATAGGTATCCAAATCTTTTCCGAAGCAAACATAGACTTGAACCGTGTTTCCTATCCAGTTTTCAGAGAGACTTGCATTCAAGATTTTGATAAAAATGCTAAATATTCTCCCAAAAGTGGAAAATTATTGTACACTCCACGGCAGCGCGAAGAGATGTGTGGCATTCTTCAGCTTTCTGATGAAGTCTTGGCGCACAACATATTGTCACGCTTGACACCGAGGGATGTTGCATCGATTGGTTCTGTTTGCAGGAGGATCCGTCAATTGACAAAGAACGAGCACGTTAGGAAGATGGTTTGTCAAAACGCATGGGGCAAAGAAGTGACAGGTACATTGGAACTGATGACCAAGAAGTTAGGTTGGGGCCGTCTGACTCGGGAGCTTACTACTCTTGAGGCTGTTTGCTGGAAAAAAGTTACAGTTGGAGGCGGGGTTGAGCCTTCACGCTGCAATTTCAGTGCTTGTGCTGCAGGAAATAGGCTTGTATTATTTGGAGGTGAAGGAGTGGATATGCAGCCTATGGATGATACTTTTGTTCTAAATCTTGATGCTAAGAATCCAGAATGGCAAAGGGTTAGTGTGATATCCTCCCCGCCCGGCCGATGGGGCCACACACTCTCTTGCTTAAACAGTTCTTGGCTAGTTGTTTTTGGTGGATGTGGTAGGCAAGGATTGCTTAATGATGTGTTTGTGCTTGATTTGGATGCTCAACAGCCGACATGGAAGGAAGTCTTCGGTGAAGCGCCGCCTCTTCCGAGATCTTGGCACAGCTCATGCACAATTGAAGGCTCTAAATTGGTTGTCTCGGGCGGCTGCACAGATGCCGGAGTACTTCTTAGTGACACATATTTACTTGACCTCACAATAGATAATCCTACATGGAGAGAAATTCCAACTTCATGGACTCCTCCTTCTAGGTTAGGGCACTCACTCTCAGTTTATGGTAGGACAAAGATTCTCATGTTTGGTGGACTTGCAAAGAGTGGACACTTAAGGTTAAGATCAGGTGAGGCTTATACAATTGATTTAGAAGCTGAACAACCACAATGGAGGCAACTAGAATGTAGTGCATTCACAGGTTTATCAAATCAAAATGCTGTTGTACCTCCTCCTCGACTAGATCATGTTGCAGTAAGCATGCCTTGTGGGAGGGTTATTATATTTGGAGGTTCCATTGCAGGTCTTCATTCACCGTCTCAACTATTTCTATTGGACCCTGCCGAAGAGAAACCGACGTGGAGGATCCTCAATGTTCCGGGGGAACCACCTAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGAGTTTTGGTGTTGGGTGGACATACCGGGGAGGAATGGGTGCTGAATGAGTTGCATGAGTTGTGCTTGGCAAGTCGACAAGACTCTGACATGTGA
Protein sequence

>MS.gene62679.t1

MAMARDKNEDEEEVHNQNQKGGKRLKCMNMKKNEQEEKQVVDEEESELPLKPELFFYPTTPTSFVVSDALESDFPIIYVNKVFEISTGYRAHEALGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNRLRLTPIHDDDGVVTHIIGIQIFSEANIDLNRVSYPVFRETCIQDFDKNAKYSPKSGKLLYTPRQREEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLTRELTTLEAVCWKKVTVGGGVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWQRVSVISSPPGRWGHTLSCLNSSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWKEVFGEAPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTIDNPTWREIPTSWTPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEAEQPQWRQLECSAFTGLSNQNAVVPPPRLDHVAVSMPCGRVIIFGGSIAGLHSPSQLFLLDPAEEKPTWRILNVPGEPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASRQDSDM