Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62780.t1 | XP_024628361.1 | 97.5 | 316 | 8 | 0 | 1 | 316 | 55 | 370 | 1.90E-171 | 611.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62780.t1 | Q08062 | 85.8 | 316 | 45 | 0 | 1 | 316 | 16 | 331 | 2.0e-153 | 543.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62780.t1 | G7LBJ9 | 97.5 | 316 | 8 | 0 | 1 | 316 | 98 | 413 | 1.4e-171 | 611.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053581 | MS.gene62780 | 0.802755 | 4.83E-49 | -1.69E-46 |
| MS.gene054118 | MS.gene62780 | 0.815226 | 1.03E-51 | -1.69E-46 |
| MS.gene055144 | MS.gene62780 | 0.82127 | 4.41E-53 | -1.69E-46 |
| MS.gene055371 | MS.gene62780 | 0.809453 | 1.88E-50 | -1.69E-46 |
| MS.gene058339 | MS.gene62780 | 0.811329 | 7.39E-51 | -1.69E-46 |
| MS.gene058351 | MS.gene62780 | 0.803717 | 3.05E-49 | -1.69E-46 |
| MS.gene058909 | MS.gene62780 | 0.852521 | 4.37E-61 | -1.69E-46 |
| MS.gene058912 | MS.gene62780 | 0.850238 | 1.93E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 70 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAAAATTACAGGTTGATT+TGG | 0.201276 | 8.4:+80802187 | None:intergenic |
| CATATTCGTGATTGGGTTCT+AGG | 0.208668 | 8.4:-80801006 | MS.gene62780:CDS |
| GATTAAAACACAGGACAAAT+TGG | 0.265846 | 8.4:-80802253 | None:intergenic |
| CCAGCATTAGAGGCACTTAA+AGG | 0.277108 | 8.4:-80802148 | MS.gene62780:CDS |
| ATTAGAGCATTTGTATTTGC+TGG | 0.287739 | 8.4:+80801516 | None:intergenic |
| AATTAGTTGCTGATGATAAT+TGG | 0.294423 | 8.4:-80801278 | MS.gene62780:intron |
| CAGCTTCCTTGCTTTGATAA+TGG | 0.303489 | 8.4:+80801065 | None:intergenic |
| CATTTAGCTTCTCAGAGATT+TGG | 0.316171 | 8.4:+80801415 | None:intergenic |
| GGATGTTAACATTGCTGTTA+TGG | 0.320450 | 8.4:-80801930 | MS.gene62780:CDS |
| TGATATTGAACCAGCATTAG+AGG | 0.332040 | 8.4:-80802158 | MS.gene62780:CDS |
| GTGTATTCTGATGGATCTTA+TGG | 0.333768 | 8.4:-80800870 | MS.gene62780:CDS |
| GCTGCTTTCCCACTTCTTAG+AGG | 0.334277 | 8.4:-80802103 | MS.gene62780:intron |
| TCTCCTTTGTCACATGTAAC+AGG | 0.337906 | 8.4:+80800819 | None:intergenic |
| CTTGCGATCATATTCGTGAT+TGG | 0.341095 | 8.4:-80801014 | MS.gene62780:CDS |
| GCAAAATTACAGGTTGATTT+GGG | 0.351194 | 8.4:+80802188 | None:intergenic |
| CTTGATCATAATAGAGCATT+AGG | 0.352322 | 8.4:-80801438 | MS.gene62780:CDS |
| CTAATTCTCTGACATGCTTC+TGG | 0.371163 | 8.4:+80801295 | None:intergenic |
| CAAGGCTCAAGCTTCAGCTT+TGG | 0.381754 | 8.4:-80801840 | MS.gene62780:CDS |
| TCAAGCATATGCAAAATTAC+AGG | 0.382709 | 8.4:+80802178 | None:intergenic |
| ATCATCCCTCTTGCTATCAT+TGG | 0.393430 | 8.4:+80802217 | None:intergenic |
| AGCATTTGTATTTGCTGGAT+TGG | 0.420149 | 8.4:+80801521 | None:intergenic |
| TTGCGATCATATTCGTGATT+GGG | 0.420157 | 8.4:-80801013 | MS.gene62780:CDS |
| GGCTCAAGCTTCAGCTTTGG+AGG | 0.422591 | 8.4:-80801837 | MS.gene62780:CDS |
| AACATTGCTGTTATGGTTGG+TGG | 0.430741 | 8.4:-80801923 | MS.gene62780:CDS |
| CTTTCCATTCCTTCCTTCCG+TGG | 0.437314 | 8.4:+80801896 | None:intergenic |
| CAGCATTAGAGGCACTTAAA+GGG | 0.439157 | 8.4:-80802147 | MS.gene62780:CDS |
| CCTTTAAGTGCCTCTAATGC+TGG | 0.442041 | 8.4:+80802148 | None:intergenic |
| GCAACCGTGGCAACAAGAAA+TGG | 0.443310 | 8.4:-80801318 | MS.gene62780:CDS |
| TCAGGGAACATGGGTATCAA+TGG | 0.455290 | 8.4:-80800895 | MS.gene62780:intron |
| CTGGCCATTTCTTGTTGCCA+CGG | 0.472941 | 8.4:+80801314 | None:intergenic |
| ATAGCAAGAGGGATGATGTT+AGG | 0.473050 | 8.4:-80802211 | MS.gene62780:CDS |
| TTGATCTATTTCAGGGAACA+TGG | 0.477408 | 8.4:-80800905 | MS.gene62780:intron |
| TATAGGTGTTGTTGCTACTA+CGG | 0.487099 | 8.4:-80801972 | MS.gene62780:intron |
| GGCACTTAAAGGGGTGAAGA+TGG | 0.489594 | 8.4:-80802137 | MS.gene62780:CDS |
| GTTAACATTGCTGTTATGGT+TGG | 0.495278 | 8.4:-80801926 | MS.gene62780:CDS |
| TGAATTCTCAAGGGAAAAGA+TGG | 0.497373 | 8.4:-80800654 | MS.gene62780:CDS |
| TAAGAATGTTTCAATTTACA+AGG | 0.500824 | 8.4:-80801858 | MS.gene62780:CDS |
| TTCTTGTTGCCACGGTTGCA+TGG | 0.502705 | 8.4:+80801322 | None:intergenic |
| TTTCCATTCCTTCCTTCCGT+GGG | 0.509336 | 8.4:+80801897 | None:intergenic |
| CAGGGAACATGGGTATCAAT+GGG | 0.511230 | 8.4:-80800894 | MS.gene62780:CDS |
| ACGGTTGCATGGTTGACGTC+TGG | 0.512596 | 8.4:+80801333 | None:intergenic |
| TCACAACTGTTCAGCAGCGT+GGG | 0.522667 | 8.4:-80801092 | MS.gene62780:CDS |
| TTACATGTGACAAAGGAGAA+TGG | 0.562455 | 8.4:-80800815 | MS.gene62780:CDS |
| TCAAGATTGATGAATTCTCA+AGG | 0.563770 | 8.4:-80800664 | MS.gene62780:CDS |
| ATCACAACTGTTCAGCAGCG+TGG | 0.564705 | 8.4:-80801093 | MS.gene62780:CDS |
| GGTGGATTCCCACGGAAGGA+AGG | 0.567363 | 8.4:-80801905 | MS.gene62780:CDS |
| GGATCTTATGGTATCCAACC+TGG | 0.573108 | 8.4:-80800858 | MS.gene62780:CDS |
| TTGGGTTCTAGGTACACCTA+AGG | 0.583834 | 8.4:-80800995 | MS.gene62780:intron |
| TTATGGTTGGTGGATTCCCA+CGG | 0.584515 | 8.4:-80801913 | MS.gene62780:CDS |
| TGATCTATTTCAGGGAACAT+GGG | 0.587962 | 8.4:-80800904 | MS.gene62780:intron |
| CACAACTGTTCAGCAGCGTG+GGG | 0.588509 | 8.4:-80801091 | MS.gene62780:CDS |
| TCAATGGGAGTGTATTCTGA+TGG | 0.591080 | 8.4:-80800879 | MS.gene62780:CDS |
| AAGAGTAAATGAGACCAGGT+TGG | 0.593344 | 8.4:+80800844 | None:intergenic |
| TTTCCTGTTACATGTGACAA+AGG | 0.594930 | 8.4:-80800822 | MS.gene62780:CDS |
| AAAACATGCCTCTAAGAAGT+GGG | 0.598346 | 8.4:+80802095 | None:intergenic |
| ATTCCCACGGAAGGAAGGAA+TGG | 0.604648 | 8.4:-80801900 | MS.gene62780:CDS |
| CTTGTTCCAATGATAGCAAG+AGG | 0.618184 | 8.4:-80802223 | MS.gene62780:CDS |
| GGATGTTGTTGAAGCTTGCA+AGG | 0.620315 | 8.4:-80801951 | MS.gene62780:CDS |
| GCTCATTGAGGAGAAAACAT+TGG | 0.620815 | 8.4:-80800615 | MS.gene62780:CDS |
| AGCATTAGAGGCACTTAAAG+GGG | 0.621633 | 8.4:-80802146 | MS.gene62780:CDS |
| CAAGATTGATGAATTCTCAA+GGG | 0.626012 | 8.4:-80800663 | MS.gene62780:CDS |
| GGAGAATGGAACATTGTACA+AGG | 0.636027 | 8.4:-80800801 | MS.gene62780:intron |
| GGTTGGTGGATTCCCACGGA+AGG | 0.640456 | 8.4:-80801909 | MS.gene62780:CDS |
| AACAGCTCAAGAGCTCATTG+AGG | 0.646195 | 8.4:-80800627 | MS.gene62780:CDS |
| GGAAAAGAGTAAATGAGACC+AGG | 0.651573 | 8.4:+80800840 | None:intergenic |
| GGGGTGCCATTATCAAAGCA+AGG | 0.653347 | 8.4:-80801071 | MS.gene62780:CDS |
| GACGTCTGGATATTGAGTTG+AGG | 0.679778 | 8.4:+80801347 | None:intergenic |
| AGACGTCAACCATGCAACCG+TGG | 0.680021 | 8.4:-80801331 | MS.gene62780:CDS |
| TTGTTCCAATGATAGCAAGA+GGG | 0.692772 | 8.4:-80802222 | MS.gene62780:CDS |
| ACAACTGTTCAGCAGCGTGG+GGG | 0.720838 | 8.4:-80801090 | MS.gene62780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGCATATAAAAATGTAATAT+AGG | - | chr8.4:80800849-80800868 | MS.gene62780:CDS | 15.0% |
| !! | ATGTGAAAAATGTTATCATT+TGG | - | chr8.4:80801458-80801477 | MS.gene62780:CDS | 20.0% |
| !! | ATTTACTTTGATCTATTTCA+GGG | - | chr8.4:80801926-80801945 | MS.gene62780:CDS | 20.0% |
| !! | TAAGAATGTTTCAATTTACA+AGG | - | chr8.4:80800980-80800999 | MS.gene62780:intron | 20.0% |
| !! | TATGTTATGATAATTTGACA+GGG | - | chr8.4:80802150-80802169 | MS.gene62780:CDS | 20.0% |
| !! | TATTTACTTTGATCTATTTC+AGG | - | chr8.4:80801925-80801944 | MS.gene62780:CDS | 20.0% |
| !! | TGTGAAAAATGTTATCATTT+GGG | - | chr8.4:80801459-80801478 | MS.gene62780:CDS | 20.0% |
| !! | TTATGTTATGATAATTTGAC+AGG | - | chr8.4:80802149-80802168 | MS.gene62780:CDS | 20.0% |
| !!! | AGACATGTTATATTTTTATC+AGG | + | chr8.4:80801373-80801392 | None:intergenic | 20.0% |
| !!! | ATATATTTTTCTTGTGTGTT+AGG | - | chr8.4:80801707-80801726 | MS.gene62780:intron | 20.0% |
| !!! | GACATGTTATATTTTTATCA+GGG | + | chr8.4:80801372-80801391 | None:intergenic | 20.0% |
| ! | AAAATCAGTTAGGTTTGAAA+AGG | - | chr8.4:80801094-80801113 | MS.gene62780:CDS | 25.0% |
| ! | AACCTAACTATACTATAAAG+AGG | + | chr8.4:80801069-80801088 | None:intergenic | 25.0% |
| ! | AAGACTGAACTGTTAATTAA+TGG | + | chr8.4:80801200-80801219 | None:intergenic | 25.0% |
| ! | AATTAAGAAAAACGAACCTT+AGG | + | chr8.4:80801862-80801881 | None:intergenic | 25.0% |
| ! | AATTAGTTGCTGATGATAAT+TGG | - | chr8.4:80801560-80801579 | MS.gene62780:intron | 25.0% |
| ! | ACCTAACTATACTATAAAGA+GGG | + | chr8.4:80801068-80801087 | None:intergenic | 25.0% |
| ! | AGGTTCATAAAAAATCAGTT+AGG | - | chr8.4:80801084-80801103 | MS.gene62780:CDS | 25.0% |
| ! | ATTCATAAAGAAAACCATGA+TGG | + | chr8.4:80800807-80800826 | None:intergenic | 25.0% |
| ! | CAATTAATCATATTCCATCA+TGG | - | chr8.4:80800790-80800809 | MS.gene62780:intron | 25.0% |
| ! | CCAAAACTTTATACCAATTT+GGG | - | chr8.4:80801164-80801183 | MS.gene62780:intron | 25.0% |
| ! | GTGAAAAATGTTATCATTTG+GGG | - | chr8.4:80801460-80801479 | MS.gene62780:CDS | 25.0% |
| !! | TTCCAATTATTTCTTAATGC+AGG | - | chr8.4:80801282-80801301 | MS.gene62780:CDS | 25.0% |
| !!! | ATATTTTTATCAGGGATTGA+TGG | + | chr8.4:80801364-80801383 | None:intergenic | 25.0% |
| AATAAAGCACAAAGCATAAG+TGG | + | chr8.4:80801909-80801928 | None:intergenic | 30.0% | |
| ACCCTCTTTATAGTATAGTT+AGG | - | chr8.4:80801064-80801083 | MS.gene62780:CDS | 30.0% | |
| ATCAAGATTAGGATTGTTCA+TGG | + | chr8.4:80801256-80801275 | None:intergenic | 30.0% | |
| CAAGATTGATGAATTCTCAA+GGG | - | chr8.4:80802175-80802194 | MS.gene62780:CDS | 30.0% | |
| CACCTGCATTAAGAAATAAT+TGG | + | chr8.4:80801287-80801306 | None:intergenic | 30.0% | |
| GAAAGGAAATTATAACTACC+TGG | + | chr8.4:80801224-80801243 | None:intergenic | 30.0% | |
| GCCAAAACTTTATACCAATT+TGG | - | chr8.4:80801163-80801182 | MS.gene62780:intron | 30.0% | |
| TCAAGATTGATGAATTCTCA+AGG | - | chr8.4:80802174-80802193 | MS.gene62780:CDS | 30.0% | |
| TCAAGCATATGCAAAATTAC+AGG | + | chr8.4:80800663-80800682 | None:intergenic | 30.0% | |
| TGGAAGATACAATCAAGATT+AGG | + | chr8.4:80801267-80801286 | None:intergenic | 30.0% | |
| ! | ATTAGAGCATTTGTATTTGC+TGG | + | chr8.4:80801325-80801344 | None:intergenic | 30.0% |
| ! | CATAACTGATTTCTTCATCA+AGG | + | chr8.4:80802134-80802153 | None:intergenic | 30.0% |
| ! | CCCAAATTGGTATAAAGTTT+TGG | + | chr8.4:80801167-80801186 | None:intergenic | 30.0% |
| ! | CTTGATCATAATAGAGCATT+AGG | - | chr8.4:80801400-80801419 | MS.gene62780:CDS | 30.0% |
| !! | GCAAAATTACAGGTTGATTT+GGG | + | chr8.4:80800653-80800672 | None:intergenic | 30.0% |
| !! | TGCAAAATTACAGGTTGATT+TGG | + | chr8.4:80800654-80800673 | None:intergenic | 30.0% |
| !! | TTCCTAGTTCTAGCAAATAA+CGG | - | chr8.4:80802088-80802107 | MS.gene62780:intron | 30.0% |
| ACACTTAATTTCCTAGCTAG+TGG | + | chr8.4:80801687-80801706 | None:intergenic | 35.0% | |
| ACCTTTACAGAAAACCATGA+TGG | + | chr8.4:80801122-80801141 | None:intergenic | 35.0% | |
| ATTAACAGTTCAGTCTTACC+AGG | - | chr8.4:80801203-80801222 | MS.gene62780:intron | 35.0% | |
| CAAAGATAGTCAGATTGAGA+AGG | + | chr8.4:80801601-80801620 | None:intergenic | 35.0% | |
| GATTAGGATTGTTCATGGTT+TGG | + | chr8.4:80801251-80801270 | None:intergenic | 35.0% | |
| TGAATTCTCAAGGGAAAAGA+TGG | - | chr8.4:80802184-80802203 | MS.gene62780:CDS | 35.0% | |
| TGATATTGAACCAGCATTAG+AGG | - | chr8.4:80800680-80800699 | MS.gene62780:intron | 35.0% | |
| TGATCTATTTCAGGGAACAT+GGG | - | chr8.4:80801934-80801953 | MS.gene62780:CDS | 35.0% | |
| TTACATGTGACAAAGGAGAA+TGG | - | chr8.4:80802023-80802042 | MS.gene62780:intron | 35.0% | |
| TTGATCTATTTCAGGGAACA+TGG | - | chr8.4:80801933-80801952 | MS.gene62780:CDS | 35.0% | |
| TTGCGATCATATTCGTGATT+GGG | - | chr8.4:80801825-80801844 | MS.gene62780:CDS | 35.0% | |
| TTGTTCCAATGATAGCAAGA+GGG | - | chr8.4:80800616-80800635 | MS.gene62780:CDS | 35.0% | |
| TTTCCTGTTACATGTGACAA+AGG | - | chr8.4:80802016-80802035 | MS.gene62780:intron | 35.0% | |
| ! | AAAAACATGCCTCTAAGAAG+TGG | + | chr8.4:80800747-80800766 | None:intergenic | 35.0% |
| ! | AAAACATGCCTCTAAGAAGT+GGG | + | chr8.4:80800746-80800765 | None:intergenic | 35.0% |
| ! | ACCATCATGGTTTTCTGTAA+AGG | - | chr8.4:80801118-80801137 | MS.gene62780:intron | 35.0% |
| ! | AGCATTTGTATTTGCTGGAT+TGG | + | chr8.4:80801320-80801339 | None:intergenic | 35.0% |
| ! | ATTGAGAAGGTTTGAAACTG+AGG | + | chr8.4:80801588-80801607 | None:intergenic | 35.0% |
| ! | CATTTAGCTTCTCAGAGATT+TGG | + | chr8.4:80801426-80801445 | None:intergenic | 35.0% |
| ! | GGATGTTAACATTGCTGTTA+TGG | - | chr8.4:80800908-80800927 | MS.gene62780:intron | 35.0% |
| ! | GTGTATTCTGATGGATCTTA+TGG | - | chr8.4:80801968-80801987 | MS.gene62780:CDS | 35.0% |
| ! | GTTAACATTGCTGTTATGGT+TGG | - | chr8.4:80800912-80800931 | MS.gene62780:intron | 35.0% |
| ! | TGCATGGAATATTTAGAGCA+TGG | + | chr8.4:80801646-80801665 | None:intergenic | 35.0% |
| ! | TGGAATATTTAGAGCATGGA+TGG | + | chr8.4:80801642-80801661 | None:intergenic | 35.0% |
| !! | GTTCATGGTTTGGTTTAGAA+AGG | + | chr8.4:80801241-80801260 | None:intergenic | 35.0% |
| !! | TATAGGTGTTGTTGCTACTA+CGG | - | chr8.4:80800866-80800885 | MS.gene62780:CDS | 35.0% |
| AAGAGTAAATGAGACCAGGT+TGG | + | chr8.4:80801997-80802016 | None:intergenic | 40.0% | |
| ATAGCAAGAGGGATGATGTT+AGG | - | chr8.4:80800627-80800646 | MS.gene62780:CDS | 40.0% | |
| CAGCTTCCTTGCTTTGATAA+TGG | + | chr8.4:80801776-80801795 | None:intergenic | 40.0% | |
| CATATTCGTGATTGGGTTCT+AGG | - | chr8.4:80801832-80801851 | MS.gene62780:CDS | 40.0% | |
| CTAATTCTCTGACATGCTTC+TGG | + | chr8.4:80801546-80801565 | None:intergenic | 40.0% | |
| CTTGCGATCATATTCGTGAT+TGG | - | chr8.4:80801824-80801843 | MS.gene62780:CDS | 40.0% | |
| CTTGTTCCAATGATAGCAAG+AGG | - | chr8.4:80800615-80800634 | MS.gene62780:CDS | 40.0% | |
| GCTCATTGAGGAGAAAACAT+TGG | - | chr8.4:80802223-80802242 | MS.gene62780:CDS | 40.0% | |
| GGAAAAGAGTAAATGAGACC+AGG | + | chr8.4:80802001-80802020 | None:intergenic | 40.0% | |
| GGAGAATGGAACATTGTACA+AGG | - | chr8.4:80802037-80802056 | MS.gene62780:intron | 40.0% | |
| TCTCCTTTGTCACATGTAAC+AGG | + | chr8.4:80802022-80802041 | None:intergenic | 40.0% | |
| ! | AACATTGCTGTTATGGTTGG+TGG | - | chr8.4:80800915-80800934 | MS.gene62780:intron | 40.0% |
| ! | ATCATCCCTCTTGCTATCAT+TGG | + | chr8.4:80800624-80800643 | None:intergenic | 40.0% |
| ! | GACCGTTATTTGCTAGAACT+AGG | + | chr8.4:80802093-80802112 | None:intergenic | 40.0% |
| ! | TCAATGGGAGTGTATTCTGA+TGG | - | chr8.4:80801959-80801978 | MS.gene62780:CDS | 40.0% |
| !! | AGCATTAGAGGCACTTAAAG+GGG | - | chr8.4:80800692-80800711 | MS.gene62780:intron | 40.0% |
| !! | CAGCATTAGAGGCACTTAAA+GGG | - | chr8.4:80800691-80800710 | MS.gene62780:intron | 40.0% |
| AACAGCTCAAGAGCTCATTG+AGG | - | chr8.4:80802211-80802230 | MS.gene62780:CDS | 45.0% | |
| AGCAATCTCTTCCACTAGCT+AGG | - | chr8.4:80801673-80801692 | MS.gene62780:intron | 45.0% | |
| CAGGGAACATGGGTATCAAT+GGG | - | chr8.4:80801944-80801963 | MS.gene62780:CDS | 45.0% | |
| CCTTTAAGTGCCTCTAATGC+TGG | + | chr8.4:80800693-80800712 | None:intergenic | 45.0% | |
| GAGATTGCTTTGCATGTGCA+TGG | + | chr8.4:80801662-80801681 | None:intergenic | 45.0% | |
| GGATCTTATGGTATCCAACC+TGG | - | chr8.4:80801980-80801999 | MS.gene62780:intron | 45.0% | |
| GGATGTTGTTGAAGCTTGCA+AGG | - | chr8.4:80800887-80800906 | MS.gene62780:CDS | 45.0% | |
| TCAGGGAACATGGGTATCAA+TGG | - | chr8.4:80801943-80801962 | MS.gene62780:CDS | 45.0% | |
| TTTCCATTCCTTCCTTCCGT+GGG | + | chr8.4:80800944-80800963 | None:intergenic | 45.0% | |
| ! | GACGTCTGGATATTGAGTTG+AGG | + | chr8.4:80801494-80801513 | None:intergenic | 45.0% |
| !! | CCAGCATTAGAGGCACTTAA+AGG | - | chr8.4:80800690-80800709 | MS.gene62780:intron | 45.0% |
| !! | GGTTTGAAAAGGCACCATCA+TGG | - | chr8.4:80801105-80801124 | MS.gene62780:CDS | 45.0% |
| !! | TTATGGTTGGTGGATTCCCA+CGG | - | chr8.4:80800925-80800944 | MS.gene62780:intron | 45.0% |
| !! | TTGGGTTCTAGGTACACCTA+AGG | - | chr8.4:80801843-80801862 | MS.gene62780:CDS | 45.0% |
| ATCACAACTGTTCAGCAGCG+TGG | - | chr8.4:80801745-80801764 | MS.gene62780:intron | 50.0% | |
| ATTCCCACGGAAGGAAGGAA+TGG | - | chr8.4:80800938-80800957 | MS.gene62780:intron | 50.0% | |
| CAAGGCTCAAGCTTCAGCTT+TGG | - | chr8.4:80800998-80801017 | MS.gene62780:CDS | 50.0% | |
| CTGGCCATTTCTTGTTGCCA+CGG | + | chr8.4:80801527-80801546 | None:intergenic | 50.0% | |
| CTTTCCATTCCTTCCTTCCG+TGG | + | chr8.4:80800945-80800964 | None:intergenic | 50.0% | |
| GCAACCGTGGCAACAAGAAA+TGG | - | chr8.4:80801520-80801539 | MS.gene62780:CDS | 50.0% | |
| GGCACTTAAAGGGGTGAAGA+TGG | - | chr8.4:80800701-80800720 | MS.gene62780:intron | 50.0% | |
| TCACAACTGTTCAGCAGCGT+GGG | - | chr8.4:80801746-80801765 | MS.gene62780:intron | 50.0% | |
| TGGTTCGTCTCGACCCAAAT+TGG | + | chr8.4:80801180-80801199 | None:intergenic | 50.0% | |
| TTCTTGTTGCCACGGTTGCA+TGG | + | chr8.4:80801519-80801538 | None:intergenic | 50.0% | |
| ! | GCTGCTTTCCCACTTCTTAG+AGG | - | chr8.4:80800735-80800754 | MS.gene62780:intron | 50.0% |
| !! | GGGGTGCCATTATCAAAGCA+AGG | - | chr8.4:80801767-80801786 | MS.gene62780:intron | 50.0% |
| ACAACTGTTCAGCAGCGTGG+GGG | - | chr8.4:80801748-80801767 | MS.gene62780:intron | 55.0% | |
| ACGGTTGCATGGTTGACGTC+TGG | + | chr8.4:80801508-80801527 | None:intergenic | 55.0% | |
| AGACGTCAACCATGCAACCG+TGG | - | chr8.4:80801507-80801526 | MS.gene62780:CDS | 55.0% | |
| CACAACTGTTCAGCAGCGTG+GGG | - | chr8.4:80801747-80801766 | MS.gene62780:intron | 55.0% | |
| ! | GGCTCAAGCTTCAGCTTTGG+AGG | - | chr8.4:80801001-80801020 | MS.gene62780:CDS | 55.0% |
| ! | GGTGGATTCCCACGGAAGGA+AGG | - | chr8.4:80800933-80800952 | MS.gene62780:intron | 60.0% |
| !! | GGTTGGTGGATTCCCACGGA+AGG | - | chr8.4:80800929-80800948 | MS.gene62780:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 80800598 | 80802262 | 80800598 | ID=MS.gene62780 |
| chr8.4 | mRNA | 80800598 | 80802262 | 80800598 | ID=MS.gene62780.t1;Parent=MS.gene62780 |
| chr8.4 | exon | 80802104 | 80802262 | 80802104 | ID=MS.gene62780.t1.exon1;Parent=MS.gene62780.t1 |
| chr8.4 | CDS | 80802104 | 80802262 | 80802104 | ID=cds.MS.gene62780.t1;Parent=MS.gene62780.t1 |
| chr8.4 | exon | 80801814 | 80801989 | 80801814 | ID=MS.gene62780.t1.exon2;Parent=MS.gene62780.t1 |
| chr8.4 | CDS | 80801814 | 80801989 | 80801814 | ID=cds.MS.gene62780.t1;Parent=MS.gene62780.t1 |
| chr8.4 | exon | 80801279 | 80801556 | 80801279 | ID=MS.gene62780.t1.exon3;Parent=MS.gene62780.t1 |
| chr8.4 | CDS | 80801279 | 80801556 | 80801279 | ID=cds.MS.gene62780.t1;Parent=MS.gene62780.t1 |
| chr8.4 | exon | 80800996 | 80801131 | 80800996 | ID=MS.gene62780.t1.exon4;Parent=MS.gene62780.t1 |
| chr8.4 | CDS | 80800996 | 80801131 | 80800996 | ID=cds.MS.gene62780.t1;Parent=MS.gene62780.t1 |
| chr8.4 | exon | 80800802 | 80800913 | 80800802 | ID=MS.gene62780.t1.exon5;Parent=MS.gene62780.t1 |
| chr8.4 | CDS | 80800802 | 80800913 | 80800802 | ID=cds.MS.gene62780.t1;Parent=MS.gene62780.t1 |
| chr8.4 | exon | 80800598 | 80800689 | 80800598 | ID=MS.gene62780.t1.exon6;Parent=MS.gene62780.t1 |
| chr8.4 | CDS | 80800598 | 80800689 | 80800598 | ID=cds.MS.gene62780.t1;Parent=MS.gene62780.t1 |
| Gene Sequence |
| Protein sequence |
