AlfalfaGEDB | MS.gene62913

M. sativa cultivar XinJiangDaYe / MS.gene62913

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62913.t1	XP_013447709.1	95.6	113	5	0	1	113	1	113	2.20E-48	201.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62913.t1	Q3E965	45.0	100	47	3	10	107	12	105	7.1e-11	68.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62913.t1	A0A072TWC0	95.6	113	5	0	1	113	1	113	1.6e-48	201.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050904	MS.gene62913	-0.811103	8.28E-51	-1.69E-46
MS.gene052606	MS.gene62913	0.802468	5.53E-49	-1.69E-46
MS.gene055158	MS.gene62913	0.814798	1.28E-51	-1.69E-46
MS.gene05589	MS.gene62913	-0.804462	2.14E-49	-1.69E-46
MS.gene059526	MS.gene62913	0.807401	5.15E-50	-1.69E-46
MS.gene060823	MS.gene62913	0.802977	4.34E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62913.t1	MTR_7g018090	95.575	113	5	0	1	113	1	113	5.58e-76	220
MS.gene62913.t1	MTR_6g016480	52.632	95	40	2	20	113	6	96	1.84e-28	99.8
MS.gene62913.t1	MTR_0542s0020	48.101	79	41	0	27	105	24	102	3.32e-20	79.7
MS.gene62913.t1	MTR_4g129020	48.052	77	38	1	28	102	27	103	1.23e-18	77.0
MS.gene62913.t1	MTR_3g105690	41.593	113	44	4	18	112	17	125	2.10e-17	73.2
MS.gene62913.t1	MTR_3g105690	41.593	113	44	4	18	112	17	125	2.52e-17	73.2
MS.gene62913.t1	MTR_4g110130	38.462	104	54	4	9	109	31	127	7.78e-14	63.5
MS.gene62913.t1	MTR_1g013410	45.000	80	42	1	28	105	27	106	1.27e-11	57.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62913.t1	AT5G57685	36.893	103	58	2	9	104	11	113	5.27e-18	74.7
MS.gene62913.t1	AT2G24762	43.678	87	45	2	23	106	30	115	1.43e-17	73.6
MS.gene62913.t1	AT4G31730	49.398	83	32	3	28	104	32	110	1.95e-17	73.6
MS.gene62913.t1	AT4G25760	38.776	98	56	2	12	106	14	110	4.46e-16	69.3
MS.gene62913.t1	AT5G24920	43.810	105	51	3	10	112	12	110	4.19e-14	64.3
MS.gene62913.t1	AT5G38770	38.824	85	46	2	21	104	13	92	1.73e-11	56.6

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Find 24 sgRNAs with CRISPR-Local

Find 25 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCATCAAATATGCATG+TGG	0.638038	7.2:+79584741	MS.gene62913:CDS
AAAGGGCTTGTTGATCAATA+TGG	0.268497	7.2:-79584861	None:intergenic
AAATATGCATGTGGTGGATA+TGG	0.336713	7.2:+79584750	MS.gene62913:CDS
AAGATTGTTGTGATTATGGC+TGG	0.485363	7.2:+79584793	MS.gene62913:CDS
ACTGGCTTAGCCAAATAAGT+TGG	0.467964	7.2:-79584826	None:intergenic
AGAGAGTAATCCAACTTATT+TGG	0.223571	7.2:+79584816	MS.gene62913:CDS
ATATGGCTTATGGATGAAAC+TGG	0.450580	7.2:-79584844	None:intergenic
ATCATCAAATATGCATGTGG+TGG	0.565952	7.2:+79584744	MS.gene62913:CDS
CAAGAGCTAATCCACCAAAG+AGG	0.638492	7.2:-79584630	None:intergenic
CCACCAAAGAGGTAAGGAAT+GGG	0.549553	7.2:-79584619	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGAGTAATCCAACTTATT+TGG	+	chr7.2:79584816-79584835	MS.gene62913:CDS	30.0%
TTGTTGATCAATATGGCTTA+TGG	-	chr7.2:79584857-79584876	None:intergenic	30.0%
AAGATTGTTGTGATTATGGC+TGG	+	chr7.2:79584793-79584812	MS.gene62913:CDS	35.0%
ATATGGCTTATGGATGAAAC+TGG	-	chr7.2:79584847-79584866	None:intergenic	35.0%
ATCATCAAATATGCATGTGG+TGG	+	chr7.2:79584744-79584763	MS.gene62913:CDS	35.0%
GCCAAAGATTGTTGTGATTA+TGG	+	chr7.2:79584789-79584808	MS.gene62913:CDS	35.0%
GCCATAATCACAACAATCTT+TGG	-	chr7.2:79584793-79584812	None:intergenic	35.0%
CAAGAGCTAATCCACCAAAG+AGG	-	chr7.2:79584633-79584652	None:intergenic	45.0%
CCACCAAAGAGGTAAGGAAT+GGG	-	chr7.2:79584622-79584641	None:intergenic	45.0%
GCTAATCCACCAAAGAGGTA+AGG	-	chr7.2:79584628-79584647	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	79584535	79584885	79584535	ID=MS.gene62913
chr7.2	mRNA	79584535	79584885	79584535	ID=MS.gene62913.t1;Parent=MS.gene62913
chr7.2	exon	79584535	79584885	79584535	ID=MS.gene62913.t1.exon1;Parent=MS.gene62913.t1
chr7.2	CDS	79584535	79584885	79584535	ID=cds.MS.gene62913.t1;Parent=MS.gene62913.t1

Gene Sequence	>MS.gene62913 ATGGGGCCTAATAGTACTTTATCAAACAATTCCACCATGAACAAATCATCATCAGAAGCAGCTAGTCTAACAAACTTGAGTTCTCCCATTCCTTACCTCTTTGGTGGATTAGCTCTTGTTCTAGGGGTCATAGCTATAGCATTACTCATCATAGCTTGTACTTTTCGTAAACAATATTCATCTTCTACCTCAACTAATGATGAAGAAAAATCATCAAATATGCATGTGGTGGATATGGATCAGGTGAGTTTAGAGCCAAAGATTGTTGTGATTATGGCTGGAGAGAGTAATCCAACTTATTTGGCTAAGCCAGTTTCATCCATAAGCCATATTGATCAACAAGCCCTTTAG
Protein sequence	>MS.gene62913.t1 MGPNSTLSNNSTMNKSSSEAASLTNLSSPIPYLFGGLALVLGVIAIALLIIACTFRKQYSSSTSTNDEEKSSNMHVVDMDQVSLEPKIVVIMAGESNPTYLAKPVSSISHIDQQAL