AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059526


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059526.t1 MTR_4g084750 97.449 196 5 0 1 196 1 196 4.90e-140 389
MS.gene059526.t1 MTR_2g061030 62.319 138 46 1 53 190 188 319 1.86e-52 172
MS.gene059526.t1 MTR_5g014890 53.896 154 60 3 52 205 113 255 2.49e-49 162
MS.gene059526.t1 MTR_4g100550 53.892 167 69 3 29 193 83 243 2.58e-49 162
MS.gene059526.t1 MTR_1g054285 62.500 136 44 2 51 186 141 269 3.78e-49 162
MS.gene059526.t1 MTR_4g097600 58.647 133 46 2 51 183 116 239 2.25e-48 159
MS.gene059526.t1 MTR_5g013010 59.124 137 51 1 59 195 130 261 6.15e-48 159
MS.gene059526.t1 MTR_7g093430 64.800 125 37 2 59 183 155 272 1.20e-47 158
MS.gene059526.t1 MTR_8g006705 64.706 119 37 1 64 182 145 258 5.97e-47 156
MS.gene059526.t1 MTR_1g017090 48.023 177 84 4 26 200 92 262 1.95e-43 147
MS.gene059526.t1 MTR_2g038625 44.025 159 79 4 28 183 44 195 1.15e-35 125
MS.gene059526.t1 MTR_2g038580 44.025 159 79 4 28 183 44 195 1.15e-35 125
MS.gene059526.t1 MTR_3g103590 48.701 154 70 2 56 207 136 282 2.46e-35 126
MS.gene059526.t1 MTR_4g126900 49.153 118 54 3 67 182 90 203 2.44e-28 106
MS.gene059526.t1 MTR_5g013010 53.922 102 36 3 21 116 91 187 7.14e-21 86.7
MS.gene059526.t1 MTR_6g007647 48.352 91 47 0 62 152 30 120 9.81e-20 84.3
MS.gene059526.t1 MTR_6g007647 48.352 91 47 0 62 152 64 154 2.17e-19 84.3
MS.gene059526.t1 MTR_5g038280 34.197 193 92 5 4 166 21 208 1.85e-17 79.3
MS.gene059526.t1 MTR_6g011610 39.695 131 75 2 26 152 34 164 5.89e-17 77.0
MS.gene059526.t1 MTR_8g468210 35.849 159 93 3 5 159 22 175 6.95e-17 77.4
MS.gene059526.t1 MTR_7g010020 43.750 96 47 1 64 152 79 174 1.25e-16 76.3
MS.gene059526.t1 MTR_6g011610 37.410 139 75 1 14 152 57 183 1.47e-16 76.3
MS.gene059526.t1 MTR_5g039000 43.564 101 57 0 52 152 64 164 3.04e-16 75.5
MS.gene059526.t1 MTR_8g469430 44.792 96 46 1 63 151 87 182 4.13e-16 75.1
MS.gene059526.t1 MTR_7g103340 42.000 100 57 1 54 152 51 150 4.65e-16 74.3
MS.gene059526.t1 MTR_3g086790 42.478 113 55 4 53 156 46 157 1.03e-15 74.3
MS.gene059526.t1 MTR_3g080100 38.028 142 73 4 26 152 12 153 1.12e-15 73.6
MS.gene059526.t1 MTR_1g061660 46.067 89 48 0 65 153 59 147 1.48e-15 72.8
MS.gene059526.t1 MTR_3g080100 42.202 109 54 2 53 152 6 114 2.18e-15 72.0
MS.gene059526.t1 MTR_4g107650 43.182 88 50 0 65 152 95 182 3.27e-14 70.5
MS.gene059526.t1 MTR_5g019680 53.731 67 31 0 65 131 53 119 3.05e-13 66.2
MS.gene059526.t1 MTR_5g019650 53.731 67 31 0 65 131 53 119 3.08e-13 66.2
MS.gene059526.t1 MTR_8g089895 45.455 99 51 2 53 150 43 139 4.34e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059526.t1 AT2G01430 66.489 188 48 4 1 184 74 250 4.20e-79 238
MS.gene059526.t1 AT1G70920 59.474 190 56 5 1 184 1 175 1.15e-57 181
MS.gene059526.t1 AT1G70920 62.025 158 41 3 33 184 1 145 1.62e-56 177
MS.gene059526.t1 AT5G06710 49.761 209 86 6 1 205 133 326 2.39e-52 171
MS.gene059526.t1 AT4G37790 56.489 131 51 1 53 183 114 238 3.08e-47 156
MS.gene059526.t1 AT3G60390 62.406 133 42 3 52 182 148 274 4.95e-47 157
MS.gene059526.t1 AT4G16780 61.905 126 43 2 59 184 123 243 9.61e-47 155
MS.gene059526.t1 AT2G22800 57.895 133 46 2 51 183 103 225 6.31e-46 153
MS.gene059526.t1 AT2G44910 62.295 122 41 1 64 185 162 278 3.07e-45 152
MS.gene059526.t1 AT4G17460 58.015 131 50 1 53 183 123 248 1.65e-44 150
MS.gene059526.t1 AT5G47370 58.647 133 47 2 51 183 119 243 4.09e-44 149
MS.gene059526.t1 AT2G01430 60.833 120 40 3 1 116 74 190 6.04e-41 138
MS.gene059526.t1 AT5G06710 48.305 118 50 4 1 116 133 241 6.13e-22 90.9
MS.gene059526.t1 AT3G01470 47.778 90 47 0 63 152 66 155 7.99e-18 79.7
MS.gene059526.t1 AT1G69780 43.810 105 59 0 52 156 72 176 3.01e-17 78.6
MS.gene059526.t1 AT1G26960 40.323 124 68 1 52 175 58 175 9.09e-17 76.6
MS.gene059526.t1 AT5G65310 46.512 86 46 0 65 150 72 157 1.72e-14 70.9
MS.gene059526.t1 AT5G65310 46.512 86 46 0 65 150 54 139 1.82e-14 70.9
MS.gene059526.t1 AT4G36740 43.750 96 54 0 56 151 47 142 2.91e-14 69.3
MS.gene059526.t1 AT4G36740 43.750 96 54 0 56 151 46 141 3.30e-14 68.9
MS.gene059526.t1 AT2G36610 40.367 109 56 2 53 153 60 167 3.72e-14 68.2
MS.gene059526.t1 AT2G18550 42.857 98 56 0 54 151 50 147 4.57e-14 68.6
MS.gene059526.t1 AT1G27045 52.778 72 34 0 65 136 25 96 9.62e-14 67.0
MS.gene059526.t1 AT1G27045 52.778 72 34 0 65 136 25 96 9.62e-14 67.0
MS.gene059526.t1 AT1G27045 45.745 94 44 1 65 151 68 161 1.11e-13 67.8
MS.gene059526.t1 AT1G27045 52.778 72 34 0 65 136 17 88 1.18e-13 66.6
MS.gene059526.t1 AT5G15150 45.455 88 48 0 65 152 115 202 1.61e-13 68.2
MS.gene059526.t1 AT5G03790 42.697 89 51 0 65 153 77 165 1.75e-13 67.4
MS.gene059526.t1 AT4G40060 45.349 86 47 0 65 150 59 144 3.29e-13 67.4
MS.gene059526.t1 AT1G27045 52.778 72 34 0 65 136 68 139 3.33e-13 66.6
MS.gene059526.t1 AT2G22430 46.512 86 46 0 65 150 62 147 4.46e-13 67.0
MS.gene059526.t1 AT3G01220 42.157 102 57 1 44 143 64 165 6.95e-13 66.2
MS.gene059526.t1 AT5G66700 47.561 82 41 1 49 130 57 136 1.19e-12 65.1
MS.gene059526.t1 AT5G03790 35.246 122 77 1 59 178 71 192 2.30e-11 60.8

Find 64 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAGAAAGCAGCGTTAA+TGG 0.245343 4.4:+27708370 MS.gene059526:CDS
AAAGAGAAGTTGAGGAGCTT+AGG 0.327770 4.4:+27712086 MS.gene059526:CDS
AGCGACTGTGGCGGTGGTAT+TGG 0.370541 4.4:-27712209 None:intergenic
ACAGAAGCAGAAAGAGTGTT+TGG 0.395489 4.4:+27708645 MS.gene059526:intron
GATGAGGGGAGAAAAGATAT+TGG 0.398648 4.4:-27707462 None:intergenic
AAGACCCAAACCACCTCTTC+AGG 0.404339 4.4:-27712039 None:intergenic
GGTGGTGACACGCTCACATC+GGG 0.415895 4.4:-27712188 None:intergenic
TGCCATCCATTCTTCTTCTA+CGG 0.429731 4.4:-27708338 None:intergenic
TGAAGCTTTCTTCAAGGAGA+TGG 0.431949 4.4:-27708435 None:intergenic
AAGAGAAGTTGAGGAGCTTA+GGG 0.432553 4.4:+27712087 MS.gene059526:CDS
CAACTTCTCTTTGTAGCCTC+CGG 0.434325 4.4:-27712075 None:intergenic
GAATACCTGAAGAGGTGGTT+TGG 0.451281 4.4:+27712034 MS.gene059526:CDS
GGTCTTTAACTGAACAAAAC+CGG 0.455555 4.4:+27712056 MS.gene059526:CDS
ATTGGTGAAGAAGCAAAGCC+TGG 0.460244 4.4:-27707444 None:intergenic
ACCTACAAGTTCCTCCAGCT+TGG 0.470781 4.4:+27707404 MS.gene059526:CDS
AACCACACCTCCACTTGCCT+TGG 0.476841 4.4:-27708688 None:intergenic
GAAGCTTTCTTCAAGGAGAT+GGG 0.480176 4.4:-27708434 None:intergenic
AATACCTGAAGAGGTGGTTT+GGG 0.488971 4.4:+27712035 MS.gene059526:CDS
TTCGGCAGCGACTGTGGCGG+TGG 0.489852 4.4:-27712215 None:intergenic
CACATTGATAAGGTTGAAGC+TGG 0.491305 4.4:-27712163 None:intergenic
TGTCATGCTTGTCACACTCT+AGG 0.496223 4.4:-27712268 None:intergenic
GTCATGCTTGTCACACTCTA+GGG 0.499070 4.4:-27712267 None:intergenic
ATTCTTCTTCTACGGTTACT+CGG 0.502354 4.4:-27708330 None:intergenic
GGAGCTTAGGGCTATGAAGA+TGG 0.505130 4.4:+27712099 MS.gene059526:CDS
TAATTACTGGGTTTAAAGTG+TGG 0.513978 4.4:-27708465 None:intergenic
GACTGTGGCGGTGGTATTGG+TGG 0.515726 4.4:-27712206 None:intergenic
TCCAAGCTGGAGGAACTTGT+AGG 0.518571 4.4:-27707405 None:intergenic
GAGTAACCGTAGAAGAAGAA+TGG 0.519061 4.4:+27708332 MS.gene059526:CDS
GGTTTCAAAACCGTAGGGCC+AGG 0.531848 4.4:+27708707 MS.gene059526:CDS
AGCAAAGCCTGGGATAGATA+TGG 0.534631 4.4:-27707433 None:intergenic
CAAGTTGAAGCAGACAGAGA+TGG 0.539564 4.4:+27712006 MS.gene059526:CDS
GATAAGGTTGAAGCTGGAAG+AGG 0.548416 4.4:-27712157 None:intergenic
GAATTGACCATATCTATCCC+AGG 0.565626 4.4:+27707426 MS.gene059526:CDS
GAGCTTAGGGCTATGAAGAT+GGG 0.567814 4.4:+27712100 MS.gene059526:CDS
AGAATGGATGGCACTAGAAG+AGG 0.577292 4.4:+27708348 MS.gene059526:CDS
TTAGCCTTTACCTGGCCCTA+CGG 0.577524 4.4:-27708717 None:intergenic
AGATATGGTCAATTCCAAGC+TGG 0.579606 4.4:-27707418 None:intergenic
ACACCTCCACTTGCCTTGGT+CGG 0.580254 4.4:-27708684 None:intergenic
GTGCTACTTACCAGATGATG+AGG 0.582615 4.4:-27707478 None:intergenic
ACATCGGGGACACATTGATA+AGG 0.583310 4.4:-27712173 None:intergenic
GGAAGAGGCTCAGAACTATG+AGG 0.586152 4.4:-27712142 None:intergenic
TGCAGCTTAAGCTCCGACCA+AGG 0.586714 4.4:+27708671 MS.gene059526:CDS
GACCAAGGCAAGTGGAGGTG+TGG 0.601638 4.4:+27708686 MS.gene059526:CDS
AACCGTAGAAGAAGAATGGA+TGG 0.604290 4.4:+27708336 MS.gene059526:CDS
TGGTGGTGACACGCTCACAT+CGG 0.609053 4.4:-27712189 None:intergenic
TGCTACTTACCAGATGATGA+GGG 0.609343 4.4:-27707477 None:intergenic
TAAGCTCCGACCAAGGCAAG+TGG 0.615426 4.4:+27708678 MS.gene059526:CDS
AGGTGTGGTTTCAAAACCGT+AGG 0.616349 4.4:+27708701 MS.gene059526:CDS
TGAGGAGATAACACAGTAGG+TGG 0.619896 4.4:-27712124 None:intergenic
CACTCTAGGGGACAAAATGA+CGG 0.630061 4.4:-27712254 None:intergenic
CAAGAAACTGCGTCTAACAA+AGG 0.630784 4.4:+27708405 MS.gene059526:CDS
GAGGCTACAAAGAGAAGTTG+AGG 0.631401 4.4:+27712078 MS.gene059526:CDS
TTGGTGAAGAAGCAAAGCCT+GGG 0.631749 4.4:-27707443 None:intergenic
TGGAGTGCGAATACCTGAAG+AGG 0.632527 4.4:+27712026 MS.gene059526:CDS
CTATGAGGAGATAACACAGT+AGG 0.635946 4.4:-27712127 None:intergenic
TATGGTCAATTCCAAGCTGG+AGG 0.639066 4.4:-27707415 None:intergenic
GTTAGACGCAGTTTCTTGCG+AGG 0.647544 4.4:-27708400 None:intergenic
GGTGTGGTTTCAAAACCGTA+GGG 0.647806 4.4:+27708702 MS.gene059526:CDS
GCTCCGACCAAGGCAAGTGG+AGG 0.651935 4.4:+27708681 MS.gene059526:CDS
TCATGCTTGTCACACTCTAG+GGG 0.663913 4.4:-27712266 None:intergenic
AGTGCGAATACCTGAAGAGG+TGG 0.667742 4.4:+27712029 MS.gene059526:CDS
GCTACTTACCAGATGATGAG+GGG 0.700104 4.4:-27707476 None:intergenic
CTTTAACTGAACAAAACCGG+AGG 0.724376 4.4:+27712059 MS.gene059526:CDS
GTGGTGACACGCTCACATCG+GGG 0.751626 4.4:-27712187 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTCATAATTCTTTAT+AGG - chr4.4:27708269-27708288 None:intergenic 10.0%
!! AACAAAAAGTTAATATTAAA+CGG + chr4.4:27707768-27707787 MS.gene059526:intron 10.0%
!! AAGAAAATATGAATAAATTA+AGG - chr4.4:27708532-27708551 None:intergenic 10.0%
!! AATAAAATTAAAACAATGAT+CGG + chr4.4:27707684-27707703 MS.gene059526:intron 10.0%
!! AATTATATGCATATTAATTA+AGG - chr4.4:27708614-27708633 None:intergenic 10.0%
!! ATTAATAATGATAACATTTA+AGG + chr4.4:27710036-27710055 MS.gene059526:intron 10.0%
!! TATATTATATATCTAACTTT+AGG - chr4.4:27708233-27708252 None:intergenic 10.0%
!! TTAATTAATATGCATATAAT+TGG + chr4.4:27708613-27708632 MS.gene059526:intron 10.0%
!!! TTAAAGAAAGAATAATATTT+TGG - chr4.4:27711628-27711647 None:intergenic 10.0%
!! AAATTATCATAATCAACTAT+TGG - chr4.4:27711662-27711681 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG - chr4.4:27710918-27710937 None:intergenic 15.0%
!! AAGAAAAAAAATAAGTATGT+GGG - chr4.4:27707807-27707826 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG + chr4.4:27710917-27710936 MS.gene059526:intron 15.0%
!! AATAGTTGATTATGATAATT+TGG + chr4.4:27711661-27711680 MS.gene059526:intron 15.0%
!! ATATTTAACCTATTAATGTA+AGG - chr4.4:27711157-27711176 None:intergenic 15.0%
!! GAATAATAACAAAGATAATA+TGG - chr4.4:27709394-27709413 None:intergenic 15.0%
!! TATTTAACCTATTAATGTAA+GGG - chr4.4:27711156-27711175 None:intergenic 15.0%
!! TGAAAAAATGATATATTTGT+CGG + chr4.4:27708129-27708148 MS.gene059526:intron 15.0%
!! TTAAAAAATGAAACCAATAA+TGG - chr4.4:27707640-27707659 None:intergenic 15.0%
!! TTGTTTAGTAATAAAATGTT+AGG + chr4.4:27709001-27709020 MS.gene059526:intron 15.0%
!!! AAAGAATTATGAATTTTTGT+TGG + chr4.4:27708271-27708290 MS.gene059526:intron 15.0%
!!! AAGAATTATGAATTTTTGTT+GGG + chr4.4:27708272-27708291 MS.gene059526:intron 15.0%
!!! AATAAATAAGAGTATAATAG+TGG - chr4.4:27710193-27710212 None:intergenic 15.0%
!!! ATAATAATGTTTTTATGAAC+CGG + chr4.4:27709940-27709959 MS.gene059526:intron 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG - chr4.4:27710791-27710810 None:intergenic 15.0%
!!! TACAAATAGAAATTTTATCT+TGG - chr4.4:27711091-27711110 None:intergenic 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - chr4.4:27710894-27710913 None:intergenic 15.0%
!!! TCATCTCTTAATTTAATTTT+AGG - chr4.4:27709308-27709327 None:intergenic 15.0%
!!! TTCATTTATTTTACCATTAT+TGG + chr4.4:27707624-27707643 MS.gene059526:intron 15.0%
!!! TTTCATATATAGTCTTAATT+AGG - chr4.4:27708850-27708869 None:intergenic 15.0%
!! AAACTAACCAATAGTTAATA+AGG + chr4.4:27710908-27710927 MS.gene059526:intron 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr4.4:27710831-27710850 None:intergenic 20.0%
!! ATAAATTAAGGTCATGTAAA+TGG - chr4.4:27708520-27708539 None:intergenic 20.0%
!! CCACTAACTATAATTAATAA+GGG + chr4.4:27710236-27710255 MS.gene059526:intron 20.0%
!! CTTATAATAAAAGCAATGAT+AGG - chr4.4:27710665-27710684 None:intergenic 20.0%
!! GAAAAAATGATATATTTGTC+GGG + chr4.4:27708130-27708149 MS.gene059526:intron 20.0%
!! GAAGAAAAAAAATAAGTATG+TGG - chr4.4:27707808-27707827 None:intergenic 20.0%
!! GTAACATAGTATTAATTGAA+GGG - chr4.4:27711598-27711617 None:intergenic 20.0%
!! TAAATTAAGGTCATGTAAAT+GGG - chr4.4:27708519-27708538 None:intergenic 20.0%
!! TCCACTAACTATAATTAATA+AGG + chr4.4:27710235-27710254 MS.gene059526:intron 20.0%
!! TGTAACATAGTATTAATTGA+AGG - chr4.4:27711599-27711618 None:intergenic 20.0%
!! TTAATAAAACTCCATAAACA+CGG - chr4.4:27711300-27711319 None:intergenic 20.0%
!!! AAAAAATTTTAGGTACTAGT+TGG - chr4.4:27708193-27708212 None:intergenic 20.0%
!!! ACCTAAAATTTTTTTTTGAG+AGG + chr4.4:27708199-27708218 MS.gene059526:intron 20.0%
!!! ATTTTTTAACCATTAACTTG+AGG + chr4.4:27711114-27711133 MS.gene059526:intron 20.0%
!!! CATTGATTAAAATGATGATA+TGG - chr4.4:27711950-27711969 None:intergenic 20.0%
!!! GTGATCTTTATTGTTTTTTT+AGG + chr4.4:27707878-27707897 MS.gene059526:intron 20.0%
!!! TAAGCAAATTTTGACTTTTT+AGG - chr4.4:27711803-27711822 None:intergenic 20.0%
!!! TAATAATGTTTTTATGAACC+GGG + chr4.4:27709941-27709960 MS.gene059526:intron 20.0%
!!! TATTTTTTTTCTTCTTCTTG+AGG + chr4.4:27707814-27707833 MS.gene059526:intron 20.0%
!!! TCCTCTCAAAAAAAAATTTT+AGG - chr4.4:27708203-27708222 None:intergenic 20.0%
!!! TCTTTTCAATTCTTTTTCAT+CGG - chr4.4:27709034-27709053 None:intergenic 20.0%
!!! TGTACGTTGAATTAATATTT+TGG + chr4.4:27711970-27711989 MS.gene059526:intron 20.0%
!!! TTGCTTTTATTATAAGACAA+AGG + chr4.4:27710669-27710688 MS.gene059526:intron 20.0%
!!! TTGTTTTAACTTCTTTAACT+TGG - chr4.4:27709986-27710005 None:intergenic 20.0%
! AAGACAAAGGAATTACATTA+AGG + chr4.4:27710682-27710701 MS.gene059526:intron 25.0%
! AAGGTGCACTTAATAATTAT+TGG - chr4.4:27711355-27711374 None:intergenic 25.0%
! AATATTAAACGGCCTATAAA+GGG + chr4.4:27707779-27707798 MS.gene059526:intron 25.0%
! AATGATTAAGAGAAAGAGAA+TGG - chr4.4:27710951-27710970 None:intergenic 25.0%
! ACAATTAGCTCACTTAATTA+AGG + chr4.4:27708875-27708894 MS.gene059526:intron 25.0%
! ACTTTAAACGACTATTATTG+TGG + chr4.4:27710331-27710350 MS.gene059526:intron 25.0%
! ATAAAAAAACACAACTGTAG+TGG - chr4.4:27707725-27707744 None:intergenic 25.0%
! ATTAATTATAGTTAGTGGAG+TGG - chr4.4:27710234-27710253 None:intergenic 25.0%
! CATGATGATTATAAATGCAT+GGG - chr4.4:27711407-27711426 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG + chr4.4:27711739-27711758 MS.gene059526:intron 25.0%
! CATTCAATAAATGATGTATG+TGG - chr4.4:27711758-27711739 None:intergenic 25.0%
! CATTCGTTCTTGAAAATATT+TGG - chr4.4:27709835-27709854 None:intergenic 25.0%
! CCCTTATTAATTATAGTTAG+TGG - chr4.4:27710239-27710258 None:intergenic 25.0%
! GTTCTTGAAAATTGTTTGAT+TGG + chr4.4:27709780-27709799 MS.gene059526:intron 25.0%
! GTTGACATTCTATAACATAA+AGG + chr4.4:27709243-27709262 MS.gene059526:intron 25.0%
! TAAAATTACGAATATGAACC+CGG - chr4.4:27709962-27709981 None:intergenic 25.0%
! TAATATTAAACGGCCTATAA+AGG + chr4.4:27707778-27707797 MS.gene059526:intron 25.0%
! TCATGATGATTATAAATGCA+TGG - chr4.4:27711408-27711427 None:intergenic 25.0%
!! AATTTGCTTATAATAGTGAC+CGG + chr4.4:27711813-27711832 MS.gene059526:intron 25.0%
!! AATTTGCTTATAATAGTGAC+CGG - chr4.4:27711832-27711813 None:intergenic 25.0%
!! AGGTTTATGTTAAGTTTTCA+TGG + chr4.4:27709547-27709566 MS.gene059526:intron 25.0%
!! AGTAAGTTGTATGATTTTGA+TGG + chr4.4:27709074-27709093 MS.gene059526:intron 25.0%
!! ATGAATTTTTGTTGGGAAAT+TGG + chr4.4:27708279-27708298 MS.gene059526:intron 25.0%
!! TCTTGGTAAAAGAAAGATTT+TGG - chr4.4:27708496-27708515 None:intergenic 25.0%
!! TGAATTTTTGTTGGGAAATT+GGG + chr4.4:27708280-27708299 MS.gene059526:intron 25.0%
!!! AAACGACACTTATTTTGAAA+CGG - chr4.4:27711498-27711517 None:intergenic 25.0%
!!! AACTTGATTTTGCGTTTTTT+TGG - chr4.4:27709577-27709596 None:intergenic 25.0%
!!! ATCTTTGTTATTATTCTCCT+AGG + chr4.4:27709398-27709417 MS.gene059526:intron 25.0%
!!! ATGAGTCAATTTTTGAAGTT+AGG + chr4.4:27709852-27709871 MS.gene059526:intron 25.0%
!!! ATTTTGGAGGTATAATTACT+GGG - chr4.4:27708480-27708499 None:intergenic 25.0%
!!! GTGTAAGTAATCACTTTTTA+TGG - chr4.4:27711458-27711477 None:intergenic 25.0%
!!! TCTTTGTTATTATTCTCCTA+GGG + chr4.4:27709399-27709418 MS.gene059526:intron 25.0%
!!! TTTTTATGTGTGAAAGTACA+AGG + chr4.4:27710614-27710633 MS.gene059526:intron 25.0%
ACAAGGATGGTACAAAAAAA+AGG - chr4.4:27710376-27710395 None:intergenic 30.0%
AGACGATTATTATGAGATAG+AGG - chr4.4:27710122-27710141 None:intergenic 30.0%
AGATCACGTATATTTGCTTT+AGG - chr4.4:27707865-27707884 None:intergenic 30.0%
AGGAATTACATTAAGGAGAA+TGG + chr4.4:27710689-27710708 MS.gene059526:intron 30.0%
AGTTGGAAGCTAATATATAG+AGG - chr4.4:27708744-27708763 None:intergenic 30.0%
ATAACATTTAAGGAGTTGCA+TGG + chr4.4:27710046-27710065 MS.gene059526:intron 30.0%
ATACTAGACAAAGATGCAAA+AGG - chr4.4:27707518-27707537 None:intergenic 30.0%
ATGATTATAAATGCATGGGT+TGG - chr4.4:27711403-27711422 None:intergenic 30.0%
CGTGCAAAATTAATTCATGT+AGG - chr4.4:27708027-27708046 None:intergenic 30.0%
GACGATTATTATGAGATAGA+GGG - chr4.4:27710121-27710140 None:intergenic 30.0%
GCACTTAATAATTATTGGAG+AGG - chr4.4:27711350-27711369 None:intergenic 30.0%
GCTAAGTTTCAAAATCATCA+TGG + chr4.4:27709681-27709700 MS.gene059526:intron 30.0%
TAAATATTGCATTGCTAGAC+AGG - chr4.4:27710159-27710178 None:intergenic 30.0%
TAGAAATATAGCATCTCTCA+TGG - chr4.4:27708583-27708602 None:intergenic 30.0%
TTTCTCATTAAACATACCGT+AGG + chr4.4:27711201-27711220 MS.gene059526:intron 30.0%
! AAGTGATTTTGAGCTAAAGA+AGG + chr4.4:27710072-27710091 MS.gene059526:intron 30.0%
! ATCATGGATTTGTTTGTTGA+AGG + chr4.4:27709697-27709716 MS.gene059526:intron 30.0%
! GGCATCAATGACTAATTTTT+CGG - chr4.4:27712236-27712255 None:intergenic 30.0%
! TAATTACTGGGTTTAAAGTG+TGG - chr4.4:27708468-27708487 None:intergenic 30.0%
! TGGTAAAAGAAAGATTTTGG+AGG - chr4.4:27708493-27708512 None:intergenic 30.0%
! TTGAGTTGTCTACTTTCATT+TGG - chr4.4:27711260-27711279 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr4.4:27711000-27711019 MS.gene059526:intron 30.0%
!! AAGCAACACTCATTTTGAAA+CGG + chr4.4:27711893-27711912 MS.gene059526:intron 30.0%
!! GATTTTGGAGGTATAATTAC+TGG - chr4.4:27708481-27708500 None:intergenic 30.0%
!! TGCAGAGTGTTATCTATTTT+GGG + chr4.4:27709424-27709443 MS.gene059526:intron 30.0%
!! TTAATATTTTGGACACATGC+AGG + chr4.4:27711981-27712000 MS.gene059526:intron 30.0%
!! TTCAAAATGAGTGTTGCTTT+AGG - chr4.4:27711892-27711911 None:intergenic 30.0%
!! TTGCAGAGTGTTATCTATTT+TGG + chr4.4:27709423-27709442 MS.gene059526:intron 30.0%
!!! AATCAAAATTTTGGGACGAA+TGG - chr4.4:27709192-27709211 None:intergenic 30.0%
!!! CAATTTTTGAAGTTAGGCAA+GGG + chr4.4:27709858-27709877 MS.gene059526:intron 30.0%
!!! TCAATTTTTGAAGTTAGGCA+AGG + chr4.4:27709857-27709876 MS.gene059526:intron 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - chr4.4:27710999-27711018 None:intergenic 30.0%
!!! TTTTTCTGAAGCTTTCTTCA+AGG - chr4.4:27708444-27708463 None:intergenic 30.0%
AAACAGTGTCCTCAAGTTAA+TGG - chr4.4:27711126-27711145 None:intergenic 35.0%
AAAGACACAAACATGAAGAG+AGG - chr4.4:27707578-27707597 None:intergenic 35.0%
AAGACACAAACATGAAGAGA+GGG - chr4.4:27707577-27707596 None:intergenic 35.0%
ACAAAGATAATATGGCGAAG+AGG - chr4.4:27709386-27709405 None:intergenic 35.0%
ACACATATTGAAGTCGATTG+AGG - chr4.4:27708783-27708802 None:intergenic 35.0%
ACATAAACCTTGCCATATGT+AGG - chr4.4:27709537-27709556 None:intergenic 35.0%
AGCAAGACCCTTACATTAAT+AGG + chr4.4:27711146-27711165 MS.gene059526:intron 35.0%
AGGCAATTGCACATAGATTA+AGG - chr4.4:27711872-27711891 None:intergenic 35.0%
ATCCTTAATCATTGCCATTG+GGG - chr4.4:27710724-27710743 None:intergenic 35.0%
ATGGGAATGTTCTCTTAGAT+AGG + chr4.4:27709891-27709910 MS.gene059526:intron 35.0%
ATTCTTCTTCTACGGTTACT+CGG - chr4.4:27708333-27708352 None:intergenic 35.0%
GATCCTTAATCATTGCCATT+GGG - chr4.4:27710725-27710744 None:intergenic 35.0%
GGTCTTTAACTGAACAAAAC+CGG + chr4.4:27712056-27712075 MS.gene059526:CDS 35.0%
TGCAAGGATGGTACAATAAA+AGG - chr4.4:27710514-27710533 None:intergenic 35.0%
TTTCAAGAACATGAACAGCT+AGG - chr4.4:27709770-27709789 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG - chr4.4:27710869-27710888 None:intergenic 35.0%
! TGTGCAGAGTATTAATTGGA+AGG - chr4.4:27710865-27710884 None:intergenic 35.0%
!!! AACACTCATTTTGAAACGGA+GGG + chr4.4:27711897-27711916 MS.gene059526:intron 35.0%
!!! GACACTCATTTTGAAACAGA+GGG - chr4.4:27710761-27710780 None:intergenic 35.0%
!!! GACACTTATTTTGAAACGGA+GGG - chr4.4:27711494-27711513 None:intergenic 35.0%
AAACTCCATAAACACGGACA+CGG - chr4.4:27711294-27711313 None:intergenic 40.0%
AAAGAGAAGTTGAGGAGCTT+AGG + chr4.4:27712086-27712105 MS.gene059526:CDS 40.0%
AACCGTAGAAGAAGAATGGA+TGG + chr4.4:27708336-27708355 MS.gene059526:CDS 40.0%
AAGAGAAGTTGAGGAGCTTA+GGG + chr4.4:27712087-27712106 MS.gene059526:CDS 40.0%
AAGGTCATGTAAATGGGTCT+TGG - chr4.4:27708513-27708532 None:intergenic 40.0%
AATACCTGAAGAGGTGGTTT+GGG + chr4.4:27712035-27712054 MS.gene059526:CDS 40.0%
ACAAGGAATGTATGCCACAT+GGG + chr4.4:27710631-27710650 MS.gene059526:intron 40.0%
AGACACAAACATGAAGAGAG+GGG - chr4.4:27707576-27707595 None:intergenic 40.0%
AGATATGGTCAATTCCAAGC+TGG - chr4.4:27707421-27707440 None:intergenic 40.0%
AGTATGTGGGAACCCTTTAT+AGG - chr4.4:27707794-27707813 None:intergenic 40.0%
CAAGAAACTGCGTCTAACAA+AGG + chr4.4:27708405-27708424 MS.gene059526:CDS 40.0%
CACATTGATAAGGTTGAAGC+TGG - chr4.4:27712166-27712185 None:intergenic 40.0%
CATTAAGGAGAATGGTAACC+AGG + chr4.4:27710697-27710716 MS.gene059526:intron 40.0%
CTATGAGGAGATAACACAGT+AGG - chr4.4:27712130-27712149 None:intergenic 40.0%
CTTTAACTGAACAAAACCGG+AGG + chr4.4:27712059-27712078 MS.gene059526:CDS 40.0%
GAAGAAGAAAGCAGCGTTAA+TGG + chr4.4:27708370-27708389 MS.gene059526:CDS 40.0%
GAAGCTTTCTTCAAGGAGAT+GGG - chr4.4:27708437-27708456 None:intergenic 40.0%
GAATTGACCATATCTATCCC+AGG + chr4.4:27707426-27707445 MS.gene059526:CDS 40.0%
GAGAGAGTCAGAAACAAAGT+TGG + chr4.4:27710422-27710441 MS.gene059526:intron 40.0%
GAGTAACCGTAGAAGAAGAA+TGG + chr4.4:27708332-27708351 MS.gene059526:CDS 40.0%
GATCAGTCATGATGAGAAGT+TGG - chr4.4:27708761-27708780 None:intergenic 40.0%
GATGAGGGGAGAAAAGATAT+TGG - chr4.4:27707465-27707484 None:intergenic 40.0%
GGATCCTTAATCATTGCCAT+TGG - chr4.4:27710726-27710745 None:intergenic 40.0%
GTTATCTGATTCCAAGTCGA+TGG - chr4.4:27709748-27709767 None:intergenic 40.0%
TACAAGGAATGTATGCCACA+TGG + chr4.4:27710630-27710649 MS.gene059526:intron 40.0%
TATAGCATCTCTCATGGACA+TGG - chr4.4:27708577-27708596 None:intergenic 40.0%
TGAAGCTTTCTTCAAGGAGA+TGG - chr4.4:27708438-27708457 None:intergenic 40.0%
TGAAGGTTTGACCATTGATG+AGG + chr4.4:27709714-27709733 MS.gene059526:intron 40.0%
TGCCATCCATTCTTCTTCTA+CGG - chr4.4:27708341-27708360 None:intergenic 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr4.4:27711817-27711836 MS.gene059526:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr4.4:27711836-27711817 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr4.4:27711816-27711835 MS.gene059526:intron 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr4.4:27711835-27711816 None:intergenic 40.0%
TTTATCCCACAGCAATCCTA+CGG - chr4.4:27711220-27711239 None:intergenic 40.0%
! ATGGCTATGTTTTCCTGGTT+TGG + chr4.4:27709499-27709518 MS.gene059526:intron 40.0%
! GGGTGTTACAGTGAAAAAGT+TGG + chr4.4:27708300-27708319 MS.gene059526:intron 40.0%
! TCAAGTTGCAAACCCTAATC+TGG + chr4.4:27709590-27709609 MS.gene059526:intron 40.0%
! TCAGAAAGTTTTGCAAAGCG+TGG - chr4.4:27709644-27709663 None:intergenic 40.0%
! TGCTACTTACCAGATGATGA+GGG - chr4.4:27707480-27707499 None:intergenic 40.0%
!! ACAGAAGCAGAAAGAGTGTT+TGG + chr4.4:27708645-27708664 MS.gene059526:intron 40.0%
!! ATAGAGGATTAGCCTTTACC+TGG - chr4.4:27708728-27708747 None:intergenic 40.0%
!! GAAACGGAGGGAGTATTATT+GGG - chr4.4:27711482-27711501 None:intergenic 40.0%
!! TGAAACGGAGGGAGTATTAT+TGG - chr4.4:27711483-27711502 None:intergenic 40.0%
!!! AACAGAGGGAGTACTTGTTT+TGG - chr4.4:27710747-27710766 None:intergenic 40.0%
!!! CAACACTCATTTTGAAACGG+AGG + chr4.4:27711896-27711915 MS.gene059526:intron 40.0%
!!! CGACACTCATTTTGAAACAG+AGG - chr4.4:27710762-27710781 None:intergenic 40.0%
!!! CGACACTTATTTTGAAACGG+AGG - chr4.4:27711495-27711514 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr4.4:27711004-27711023 MS.gene059526:intron 40.0%
AAAAATGACACGTGACGACG+TGG - chr4.4:27710599-27710618 None:intergenic 45.0%
AACATACCGTAGGATTGCTG+TGG + chr4.4:27711211-27711230 MS.gene059526:intron 45.0%
AAGACACACGCTACTCACAA+GGG - chr4.4:27709477-27709496 None:intergenic 45.0%
ACATACCGTAGGATTGCTGT+GGG + chr4.4:27711212-27711231 MS.gene059526:intron 45.0%
ACATCGGGGACACATTGATA+AGG - chr4.4:27712176-27712195 None:intergenic 45.0%
AGAATGGATGGCACTAGAAG+AGG + chr4.4:27708348-27708367 MS.gene059526:CDS 45.0%
AGCAAAGCCTGGGATAGATA+TGG - chr4.4:27707436-27707455 None:intergenic 45.0%
AGGCAAGGGTTTGACATTCA+TGG + chr4.4:27709872-27709891 MS.gene059526:intron 45.0%
AGGTGTGGTTTCAAAACCGT+AGG + chr4.4:27708701-27708720 MS.gene059526:CDS 45.0%
AGGTTTGACCATTGATGAGG+AGG + chr4.4:27709717-27709736 MS.gene059526:intron 45.0%
ATTGGTGAAGAAGCAAAGCC+TGG - chr4.4:27707447-27707466 None:intergenic 45.0%
CAACTTCTCTTTGTAGCCTC+CGG - chr4.4:27712078-27712097 None:intergenic 45.0%
CAAGGAATGTATGCCACATG+GGG + chr4.4:27710632-27710651 MS.gene059526:intron 45.0%
CGTATGCATCAGCCTACATA+TGG + chr4.4:27709522-27709541 MS.gene059526:intron 45.0%
GAATACCTGAAGAGGTGGTT+TGG + chr4.4:27712034-27712053 MS.gene059526:CDS 45.0%
GACACAAACATGAAGAGAGG+GGG - chr4.4:27707575-27707594 None:intergenic 45.0%
GACCCCAATGGCAATGATTA+AGG + chr4.4:27710719-27710738 MS.gene059526:intron 45.0%
GAGAGAGTCAGAGACAAAGT+TGG + chr4.4:27710559-27710578 MS.gene059526:intron 45.0%
GAGCTTAGGGCTATGAAGAT+GGG + chr4.4:27712100-27712119 MS.gene059526:CDS 45.0%
GAGGCTACAAAGAGAAGTTG+AGG + chr4.4:27712078-27712097 MS.gene059526:CDS 45.0%
GATAACACTCTGCAAACCCT+AGG - chr4.4:27709418-27709437 None:intergenic 45.0%
GATAAGGTTGAAGCTGGAAG+AGG - chr4.4:27712160-27712179 None:intergenic 45.0%
GCTACTTACCAGATGATGAG+GGG - chr4.4:27707479-27707498 None:intergenic 45.0%
GGCAAGGGTTTGACATTCAT+GGG + chr4.4:27709873-27709892 MS.gene059526:intron 45.0%
GGTAAAATTGCTACTCCCTC+CGG + chr4.4:27711682-27711701 MS.gene059526:intron 45.0%
GGTGTGGTTTCAAAACCGTA+GGG + chr4.4:27708702-27708721 MS.gene059526:CDS 45.0%
GTCAAATGTCATACTCCCTC+CGG - chr4.4:27711835-27711854 None:intergenic 45.0%
TATGGTCAATTCCAAGCTGG+AGG - chr4.4:27707418-27707437 None:intergenic 45.0%
TCTTCTCCCTAGTGTCACAT+GGG - chr4.4:27710404-27710423 None:intergenic 45.0%
TGAGGAGATAACACAGTAGG+TGG - chr4.4:27712127-27712146 None:intergenic 45.0%
TGGTCAAACCTCCTCATCAA+TGG - chr4.4:27709728-27709747 None:intergenic 45.0%
TTGGGTCGTCGTGTTCAATT+GGG + chr4.4:27709442-27709461 MS.gene059526:intron 45.0%
TTGGTGAAGAAGCAAAGCCT+GGG - chr4.4:27707446-27707465 None:intergenic 45.0%
TTTGCAAAGCGTGGTGCTTT+GGG - chr4.4:27709635-27709654 None:intergenic 45.0%
TTTGGGTCGTCGTGTTCAAT+TGG + chr4.4:27709441-27709460 MS.gene059526:intron 45.0%
! CAAGTTGAAGCAGACAGAGA+TGG + chr4.4:27712006-27712025 MS.gene059526:CDS 45.0%
! CACTCTAGGGGACAAAATGA+CGG - chr4.4:27712257-27712276 None:intergenic 45.0%
! CTTGCATGGCTATGTTTTCC+TGG + chr4.4:27709494-27709513 MS.gene059526:intron 45.0%
! TCTTTTCTCCCCTCATCATC+TGG + chr4.4:27707468-27707487 MS.gene059526:CDS 45.0%
! TTTTGCAAAGCGTGGTGCTT+TGG - chr4.4:27709636-27709655 None:intergenic 45.0%
!! ACAAAGTTGGTGAGTGTGTG+GGG + chr4.4:27710435-27710454 MS.gene059526:intron 45.0%
!! AGACAAAGTTGGTGAGTGTG+TGG + chr4.4:27710570-27710589 MS.gene059526:intron 45.0%
!! GACAAAGTTGGTGAGTGTGT+GGG + chr4.4:27710571-27710590 MS.gene059526:intron 45.0%
!! GTGCTACTTACCAGATGATG+AGG - chr4.4:27707481-27707500 None:intergenic 45.0%
!! GTGGTGCTTTGGGAATGATT+CGG - chr4.4:27709625-27709644 None:intergenic 45.0%
!! TAATTTTTCGGCAGCGACTG+TGG - chr4.4:27712224-27712243 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr4.4:27711003-27711022 MS.gene059526:intron 45.0%
!! ATAAAAAATAACAAATTTAA+GGG - chr4.4:27707748-27707767 None:intergenic 5.0%
!! TATAAAAAATAACAAATTTA+AGG - chr4.4:27707749-27707768 None:intergenic 5.0%
!!! AAAAAAAAAAATCAAAATTT+TGG - chr4.4:27709201-27709220 None:intergenic 5.0%
!!! AAAAAAAAAATCAAAATTTT+GGG - chr4.4:27709200-27709219 None:intergenic 5.0%
AAAACCGTAGGGCCAGGTAA+AGG + chr4.4:27708713-27708732 MS.gene059526:intron 50.0%
AAGACCCAAACCACCTCTTC+AGG - chr4.4:27712042-27712061 None:intergenic 50.0%
AATCATTGCCATTGGGGTCC+TGG - chr4.4:27710718-27710737 None:intergenic 50.0%
AATGGTAACCAGGACCCCAA+TGG + chr4.4:27710707-27710726 MS.gene059526:intron 50.0%
ACCTACAAGTTCCTCCAGCT+TGG + chr4.4:27707404-27707423 MS.gene059526:CDS 50.0%
AGTGCGAATACCTGAAGAGG+TGG + chr4.4:27712029-27712048 MS.gene059526:CDS 50.0%
CAAGACACACGCTACTCACA+AGG - chr4.4:27709478-27709497 None:intergenic 50.0%
CGGAATGCGCATCCAGATTA+GGG - chr4.4:27709605-27709624 None:intergenic 50.0%
CTCTTCTCCCTAGTGTCACA+TGG - chr4.4:27710405-27710424 None:intergenic 50.0%
CTTCTCCCTAGTGTCACATG+GGG - chr4.4:27710403-27710422 None:intergenic 50.0%
GCATCAGCCTACATATGGCA+AGG + chr4.4:27709527-27709546 MS.gene059526:intron 50.0%
GGAAGAGGCTCAGAACTATG+AGG - chr4.4:27712145-27712164 None:intergenic 50.0%
GGAGCTTAGGGCTATGAAGA+TGG + chr4.4:27712099-27712118 MS.gene059526:CDS 50.0%
GTTAGACGCAGTTTCTTGCG+AGG - chr4.4:27708403-27708422 None:intergenic 50.0%
TACACCCCCATGTGACACTA+GGG + chr4.4:27710395-27710414 MS.gene059526:intron 50.0%
TCAGTGTAGTGTAGCACACG+AGG - chr4.4:27711324-27711343 None:intergenic 50.0%
TCCAAGCTGGAGGAACTTGT+AGG - chr4.4:27707408-27707427 None:intergenic 50.0%
TCGGAATGCGCATCCAGATT+AGG - chr4.4:27709606-27709625 None:intergenic 50.0%
TCTTCTCCCTAGTGCCACAT+GGG - chr4.4:27710541-27710560 None:intergenic 50.0%
TGAGTAGCGTGTGTCTTGCA+TGG + chr4.4:27709480-27709499 MS.gene059526:intron 50.0%
TGGAGTGCGAATACCTGAAG+AGG + chr4.4:27712026-27712045 MS.gene059526:CDS 50.0%
TTCTCCCTAGTGTCACATGG+GGG - chr4.4:27710402-27710421 None:intergenic 50.0%
! AGGAGGTTTGACCATCGACT+TGG + chr4.4:27709734-27709753 MS.gene059526:intron 50.0%
! TTAGCCTTTACCTGGCCCTA+CGG - chr4.4:27708720-27708739 None:intergenic 50.0%
AACCACACCTCCACTTGCCT+TGG - chr4.4:27708691-27708710 None:intergenic 55.0%
ACACCTCCACTTGCCTTGGT+CGG - chr4.4:27708687-27708706 None:intergenic 55.0%
CAGCACCGTGTCCGTGTTTA+TGG + chr4.4:27711286-27711305 MS.gene059526:intron 55.0%
CTCTTCTCCCTAGTGCCACA+TGG - chr4.4:27710542-27710561 None:intergenic 55.0%
CTTCTCCCTAGTGCCACATG+GGG - chr4.4:27710540-27710559 None:intergenic 55.0%
GCTGATGCATACGCCAAACC+AGG - chr4.4:27709515-27709534 None:intergenic 55.0%
GGAATGTATGCCACATGGGG+TGG + chr4.4:27710635-27710654 MS.gene059526:intron 55.0%
GGTTTCAAAACCGTAGGGCC+AGG + chr4.4:27708707-27708726 MS.gene059526:CDS 55.0%
GTACACCCCCATGTGACACT+AGG + chr4.4:27710394-27710413 MS.gene059526:intron 55.0%
TAAGCTCCGACCAAGGCAAG+TGG + chr4.4:27708678-27708697 MS.gene059526:CDS 55.0%
TGCAGCTTAAGCTCCGACCA+AGG + chr4.4:27708671-27708690 MS.gene059526:CDS 55.0%
TTCTCCCTAGTGCCACATGG+GGG - chr4.4:27710539-27710558 None:intergenic 55.0%
! CACATGGGGGTGTACAAGGA+TGG - chr4.4:27710389-27710408 None:intergenic 55.0%
! GATAGGTTGACCACCCCATG+TGG - chr4.4:27710648-27710667 None:intergenic 55.0%
! GTGTCACATGGGGGTGTACA+AGG - chr4.4:27710393-27710412 None:intergenic 55.0%
! TAAACACGGACACGGTGCTG+TGG - chr4.4:27711286-27711305 None:intergenic 55.0%
! TGGTGGTGACACGCTCACAT+CGG - chr4.4:27712192-27712211 None:intergenic 55.0%
!! TTTTTCGGCAGCGACTGTGG+CGG - chr4.4:27712221-27712240 None:intergenic 55.0%
AGCGACTGTGGCGGTGGTAT+TGG - chr4.4:27712212-27712231 None:intergenic 60.0%
CACACCCCCATGTGGCACTA+GGG + chr4.4:27710532-27710551 MS.gene059526:intron 60.0%
CATCCTTGCACACCCCCATG+TGG + chr4.4:27710524-27710543 MS.gene059526:intron 60.0%
GACCAAGGCAAGTGGAGGTG+TGG + chr4.4:27708686-27708705 MS.gene059526:CDS 60.0%
GGTGGTGACACGCTCACATC+GGG - chr4.4:27712191-27712210 None:intergenic 60.0%
GTGGTGACACGCTCACATCG+GGG - chr4.4:27712190-27712209 None:intergenic 60.0%
! CACATGGGGGTGTGCAAGGA+TGG - chr4.4:27710526-27710545 None:intergenic 60.0%
! GACTGTGGCGGTGGTATTGG+TGG - chr4.4:27712209-27712228 None:intergenic 60.0%
GCACACCCCCATGTGGCACT+AGG + chr4.4:27710531-27710550 MS.gene059526:intron 65.0%
GCTCCGACCAAGGCAAGTGG+AGG + chr4.4:27708681-27708700 MS.gene059526:CDS 65.0%
! GTGCCACATGGGGGTGTGCA+AGG - chr4.4:27710530-27710549 None:intergenic 65.0%
TTCGGCAGCGACTGTGGCGG+TGG - chr4.4:27712218-27712237 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 27707393 27712279 27707393 ID=MS.gene059526
chr4.4 mRNA 27707393 27712279 27707393 ID=MS.gene059526.t1;Parent=MS.gene059526
chr4.4 exon 27707393 27707489 27707393 ID=MS.gene059526.t1.exon1;Parent=MS.gene059526.t1
chr4.4 CDS 27707393 27707489 27707393 ID=cds.MS.gene059526.t1;Parent=MS.gene059526.t1
chr4.4 exon 27708311 27708480 27708311 ID=MS.gene059526.t1.exon2;Parent=MS.gene059526.t1
chr4.4 CDS 27708311 27708480 27708311 ID=cds.MS.gene059526.t1;Parent=MS.gene059526.t1
chr4.4 exon 27708649 27708728 27708649 ID=MS.gene059526.t1.exon3;Parent=MS.gene059526.t1
chr4.4 CDS 27708649 27708728 27708649 ID=cds.MS.gene059526.t1;Parent=MS.gene059526.t1
chr4.4 exon 27712003 27712279 27712003 ID=MS.gene059526.t1.exon4;Parent=MS.gene059526.t1
chr4.4 CDS 27712003 27712279 27712003 ID=cds.MS.gene059526.t1;Parent=MS.gene059526.t1
Gene Sequence

>MS.gene059526

ATGGCAGTTTTACCTACAAGTTCCTCCAGCTTGGAATTGACCATATCTATCCCAGGCTTTGCTTCTTCACCAATATCTTTTCTCCCCTCATCATCTGGTAAGTAGCACTTCTTAATTTCTTGCCTTTTGCATCTTTGTCTAGTATCACAATCTTCTTGTTCATCTTTTGTCATTTTGATCCCCCTCTCTTCATGTTTGTGTCTTTTTTTAATTCTGCGTAATTTTTTAAATTTCATTTATTTTACCATTATTGGTTTCATTTTTTAAATAAATATTTGTAACTTCTCTAAAAATAAAATTAAAACAATGATCGGATATATATGAATGTTCCACTACAGTTGTGTTTTTTTATCCCTTAAATTTGTTATTTTTTATAACAAAAAGTTAATATTAAACGGCCTATAAAGGGTTCCCACATACTTATTTTTTTTCTTCTTCTTGAGGATATATAATATACGTGATATAACTTCCTAAAGCAAATATACGTGATCTTTATTGTTTTTTTAGGAAATCTTTATTGTTTTTTATTTGTGTAAAATTTGTTCATATTCAAATTGATCAATATAATATATGTTTTTGTCTTTTTTTAGAGATTAACTAAGATAAAATATTCAAATTATAGAGACTAATACCTACATGAATTAATTTTGCACGAACAAAAATAAAATAACAATGATCAAAAGAATAAAAATGTTATATTTGAAATAAAATAAAAACAAATTATAGAGATCAAAAATGAAAAAATGATATATTTGTCGGGACGAAAACATATATCTAAATTTTTTGTTATGATATTTCCAACTAGTACCTAAAATTTTTTTTTGAGAGGAATTAGTTCCTAAAGTTAGATATATAATATATTGAGTTTGTAATCCTATAAAGAATTATGAATTTTTGTTGGGAAATTGGGTGTTACAGTGAAAAAGTTGGATGTGAACCGAGTAACCGTAGAAGAAGAATGGATGGCACTAGAAGAGGAAGAAGAAAGCAGCGTTAATGGAGACACTCCTCGCAAGAAACTGCGTCTAACAAAGGAACAGTCCCATCTCCTTGAAGAAAGCTTCAGAAAAAACCACACTTTAAACCCAGTAATTATACCTCCAAAATCTTTCTTTTACCAAGACCCATTTACATGACCTTAATTTATTCATATTTTCTTCTTTTCTCATGTATAATATTTACCATGTCCATGAGAGATGCTATATTTCTACTACTTTTCCTTAATTAATATGCATATAATTGGTTTTGCATTACAGAAGCAGAAAGAGTGTTTGGCAATGCAGCTTAAGCTCCGACCAAGGCAAGTGGAGGTGTGGTTTCAAAACCGTAGGGCCAGGTAAAGGCTAATCCTCTATATATTAGCTTCCAACTTCTCATCATGACTGATCCTCAATCGACTTCAATATGTGTGTGTGTGTGTAAGAGTATACAAATATTAAAATAGTATTTGTTTACCTAATTAAGACTATATATGAAAAATTAACAATTAGCTCACTTAATTAAGGTATGAGTATTTTATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTACATGAGTAGAGTTTTGAATTTTGTTTAGTAATAAAATGTTAGGTCAATATCCGATGAAAAAGAATTGAAAAGATTTGTAACTTACTAAAACATAGTAAGTTGTATGATTTTGATGGTCAAATTTTATTTATTTAAAAAATAAAAATAATTAAAATAACACTAACAGTTGAATTAAAATCAAACTGTTTTTTTTTTTGTCAAAATTACACCATTCGTCCCAAAATTTTGATTTTTTTTTTTTTTTATAAAAAAGAACAATTATGTTGACATTCTATAACATAAAGGACTAAATTAAAAAAGAAAATATAAAGTACGAAAGTGTTACCTAAAATTAAATTAAGAGATGAATTATATAATTTTGTCTTTTTTTTTTTAAAAAAATTGTGTAAGATTATCATAGATCCTCTTCGCCATATTATCTTTGTTATTATTCTCCTAGGGTTTGCAGAGTGTTATCTATTTTGGGTCGTCGTGTTCAATTGGGCTGTCGTCGCCCTTGTGAGTAGCGTGTGTCTTGCATGGCTATGTTTTCCTGGTTTGGCGTATGCATCAGCCTACATATGGCAAGGTTTATGTTAAGTTTTCATGGATCACCAAAAAAACGCAAAATCAAGTTGCAAACCCTAATCTGGATGCGCATTCCGAATCATTCCCAAAGCACCACGCTTTGCAAAACTTTCTGATTTATATTTGTGTTGCAGCTAAGTTTCAAAATCATCATGGATTTGTTTGTTGAAGGTTTGACCATTGATGAGGAGGTTTGACCATCGACTTGGAATCAGATAACCTAGCTGTTCATGTTCTTGAAAATTGTTTGATTGGTCTCGTCTTGACTGACAAACATATTCGAGCCAAATATTTTCAAGAACGAATGAGTCAATTTTTGAAGTTAGGCAAGGGTTTGACATTCATGGGAATGTTCTCTTAGATAGGACGAATTATATTAAAATTCACTGAAAATAATAATGTTTTTATGAACCGGGTTCATATTCGTAATTTTATCCAAGTTAAAGAAGTTAAAACAATGACAAAATTTGCAAGTAATAAAATTAGCAATTAATAATGATAACATTTAAGGAGTTGCATGGTTCAAGTGATTTTGAGCTAAAGAAGGTACATTTTGAATTAAAACTTACTCCCTCTATCTCATAATAATCGTCTCTTTAACATTTTTACCTGTCTAGCAATGCAATATTTATTATTATTTTTCCACTATTATACTCTTATTTATTGAATTTCATCAAACTTAACCACTCCACTAACTATAATTAATAAGGGTATTTTAGTAAATGAAACTAATTTTATCATTGAAATCAATACAATTAATTATTTTTTAATAGTCATGCACAAACTTTAAACGACTATTATTGTGGATTAATGATAAGTTGACATCCTTTTTTTTGTACCATCCTTGTACACCCCCATGTGACACTAGGGAGAAGAGAGAGTCAGAAACAAAGTTGGTGAGTGTGTGATAGTCGTTCACAAACTTTAAACGACTATTATTGTGGATTAATTATAAGTTGACATCCTTTTATTGTACCATCCTTGCACACCCCCATGTGGCACTAGGGAGAAGAGAGAGTCAGAGACAAAGTTGGTGAGTGTGTGGGGACCACGTCGTCACGTGTCATTTTTATGTGTGAAAGTACAAGGAATGTATGCCACATGGGGTGGTCAACCTATCATTGCTTTTATTATAAGACAAAGGAATTACATTAAGGAGAATGGTAACCAGGACCCCAATGGCAATGATTAAGGATCCAAAACAAGTACTCCCTCTGTTTCAAAATGAGTGTCGCTTTAGCCAAAAAAATTTGTTTCAAAATGAGTGTCGCTTTCAGTTTCCAATGCAATAATAACTTTTTCTTTTCAATTGTACCTTCCAATTAATACTCTGCACACTACTTCCAAAGTATTACTTTTAAAACTAACCAATAGTTAATAAGGATAATTTGGTAAAATAACCATTCTCTTTCTCTTAATCATTGCATTTCTTAATAAGTGTGTAAACGCCTAAAACGACACTCATTTTGAAACGGAGGGAGTAAGTTTTTATGAAAAAGTTGTGTAATCATTATTTTATCAAAAGTAACATCATATATTTCCAAGATAAAATTTCTATTTGTATAGATTTTTTAACCATTAACTTGAGGACACTGTTTAGCAAGACCCTTACATTAATAGGTTAAATATTAATTTAACAATTAACTAATGATATTTCTCATTAAACATACCGTAGGATTGCTGTGGGATAAAAGCATAATCATTGTTGTCCAAATGAAAGTAGACAACTCAATAACCACAGCACCGTGTCCGTGTTTATGGAGTTTTATTAAGCCTCGTGTGCTACACTACACTGATCACCTCTCCAATAATTATTAAGTGCACCTTTGACCACTCGATTTCATGCTTTAGACCAACCCATGCATTTATAATCATCATGAAATAACTCATCATTCATCGACAAGTATCCATAAAAAGTGATTACTTACACACCCAATAATACTCCCTCCGTTTCAAAATAAGTGTCGTTTTAGCCAAAAAAATTTGTTTCAAAATGAATGTCACTTTCAGTTTTCAATGCAATAATAACTTTTTCTTTTCAATTGTACCCTTCAATTAATACTATGTTACACTACTTCCAAAATATTATTCTTTCTTTAATAAAAAACAAACCAATAGTTGATTATGATAATTTGGTAAAATTGCTACTCCCTCCGGTCACTATTATAAGCAAATTTCTACTTTTTAGATTCATTCAATAAATGATGTATGTGGTCTATATTGTAGACCACATACATCATTTATTGAATGAACCTAAAAAGTCAAAATTTGCTTATAATAGTGACCGGAGGGAGTATGACATTTGACTACTTTATTCAATTCCTTAATCTATGTGCAATTGCCTAAAGCAACACTCATTTTGAAACGGAGGGAGTAATAAAAATTACATTTCATAATAACCATATCATCATTTTAATCAATGTGTACGTTGAATTAATATTTTGGACACATGCAGGAGCAAGTTGAAGCAGACAGAGATGGAGTGCGAATACCTGAAGAGGTGGTTTGGGTCTTTAACTGAACAAAACCGGAGGCTACAAAGAGAAGTTGAGGAGCTTAGGGCTATGAAGATGGGTCCACCTACTGTGTTATCTCCTCATAGTTCTGAGCCTCTTCCAGCTTCAACCTTATCAATGTGTCCCCGATGTGAGCGTGTCACCACCAATACCACCGCCACAGTCGCTGCCGAAAAATTAGTCATTGATGCCGTCATTTTGTCCCCTAGAGTGTGA

Protein sequence

>MS.gene059526.t1

MAVLPTSSSSLELTISIPGFASSPISFLPSSSVKKLDVNRVTVEEEWMALEEEEESSVNGDTPRKKLRLTKEQSHLLEESFRKNHTLNPKQKECLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKMGPPTVLSPHSSEPLPASTLSMCPRCERVTTNTTATVAAEKLVIDAVILSPRV