Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63291.t1 | AES71012.1 | 96.7 | 361 | 12 | 0 | 1 | 361 | 1 | 361 | 4.70E-190 | 673.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63291.t1 | O22287 | 90.3 | 361 | 35 | 0 | 1 | 361 | 1 | 361 | 1.0e-177 | 624.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63291.t1 | G7J9Y8 | 96.7 | 361 | 12 | 0 | 1 | 361 | 1 | 361 | 3.4e-190 | 673.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene63291 | MS.gene20834 | PPI |
| MS.gene63291 | MS.gene022258 | PPI |
| MS.gene20783 | MS.gene63291 | PPI |
| MS.gene63291 | MS.gene074391 | PPI |
| MS.gene63291 | MS.gene25915 | PPI |
| MS.gene63291 | MS.gene07262 | PPI |
| MS.gene70588 | MS.gene63291 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63291.t1 | MTR_3g069070 | 99.169 | 361 | 3 | 0 | 1 | 361 | 1 | 361 | 0.0 | 728 |
| MS.gene63291.t1 | MTR_5g080770 | 93.075 | 361 | 25 | 0 | 1 | 361 | 1 | 361 | 0.0 | 686 |
| MS.gene63291.t1 | MTR_3g069070 | 99.007 | 302 | 3 | 0 | 60 | 361 | 1 | 302 | 0.0 | 612 |
| MS.gene63291.t1 | MTR_4g133690 | 72.853 | 361 | 41 | 3 | 1 | 361 | 1 | 304 | 0.0 | 504 |
| MS.gene63291.t1 | MTR_3g078570 | 32.250 | 400 | 223 | 7 | 3 | 354 | 10 | 409 | 6.91e-64 | 209 |
| MS.gene63291.t1 | MTR_6g008840 | 32.432 | 407 | 226 | 8 | 3 | 361 | 9 | 414 | 7.82e-63 | 206 |
| MS.gene63291.t1 | MTR_3g078570 | 31.755 | 359 | 206 | 6 | 3 | 322 | 10 | 368 | 5.05e-57 | 190 |
| MS.gene63291.t1 | MTR_4g071670 | 31.034 | 232 | 108 | 6 | 168 | 361 | 3 | 220 | 6.29e-26 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63291.t1 | AT2G39770 | 90.859 | 361 | 33 | 0 | 1 | 361 | 1 | 361 | 0.0 | 679 |
| MS.gene63291.t1 | AT2G39770 | 90.859 | 361 | 33 | 0 | 1 | 361 | 1 | 361 | 0.0 | 679 |
| MS.gene63291.t1 | AT2G39770 | 90.859 | 361 | 33 | 0 | 1 | 361 | 1 | 361 | 0.0 | 679 |
| MS.gene63291.t1 | AT3G55590 | 83.516 | 364 | 57 | 1 | 1 | 361 | 1 | 364 | 0.0 | 627 |
| MS.gene63291.t1 | AT4G30570 | 76.596 | 329 | 76 | 1 | 21 | 348 | 1 | 329 | 0.0 | 517 |
| MS.gene63291.t1 | AT2G04650 | 32.570 | 393 | 224 | 7 | 3 | 354 | 8 | 400 | 1.23e-65 | 213 |
| MS.gene63291.t1 | AT2G04650 | 32.208 | 385 | 222 | 6 | 9 | 354 | 4 | 388 | 3.89e-65 | 212 |
| MS.gene63291.t1 | AT1G74910 | 31.034 | 406 | 232 | 8 | 3 | 361 | 11 | 415 | 4.66e-65 | 212 |
| MS.gene63291.t1 | AT1G74910 | 31.034 | 406 | 232 | 8 | 3 | 361 | 11 | 415 | 4.66e-65 | 212 |
| MS.gene63291.t1 | AT1G74910 | 30.411 | 365 | 216 | 6 | 3 | 329 | 11 | 375 | 3.25e-58 | 194 |
Find 107 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCAGTGGCCCTCACATTT+TGG | 0.174139 | 3.3:+60580507 | MS.gene63291:CDS |
| GAGACATCCCTCGCCAATTT+TGG | 0.195747 | 3.3:-60580554 | None:intergenic |
| CAATGGTTCTGCCTGGATTC+TGG | 0.230745 | 3.3:+60580401 | MS.gene63291:CDS |
| TTGATTCTGGTTGGAGGGTT+TGG | 0.231295 | 3.3:+60578677 | MS.gene63291:CDS |
| CACAATGAAGGCATTGATTC+TGG | 0.244864 | 3.3:+60578664 | None:intergenic |
| CCTATTGAACCCCTCAGTTT+TGG | 0.269147 | 3.3:+60580303 | MS.gene63291:CDS |
| AATTACCTTTGTCACCATTA+TGG | 0.298623 | 3.3:-60580089 | None:intergenic |
| GTGCATGAGACAGCCAAAAT+TGG | 0.360392 | 3.3:+60580541 | MS.gene63291:CDS |
| GTTGACGAGCCATCGAAATA+TGG | 0.375253 | 3.3:+60580187 | MS.gene63291:CDS |
| TTTGCAGATAGAGGCTCTTA+AGG | 0.376635 | 3.3:+60579692 | MS.gene63291:intron |
| GGCATTCAACTGTTGGTCAA+TGG | 0.378871 | 3.3:+60580704 | MS.gene63291:CDS |
| GCATTCAACTGTTGGTCAAT+GGG | 0.390410 | 3.3:+60580705 | MS.gene63291:CDS |
| CTTCTCCTCCATGAGATTTG+TGG | 0.394590 | 3.3:-60580063 | None:intergenic |
| GAAATATGGTGTAGTTGTTA+TGG | 0.396468 | 3.3:+60580201 | MS.gene63291:CDS |
| CCAAAACTGAGGGGTTCAAT+AGG | 0.416025 | 3.3:-60580303 | None:intergenic |
| CTCTCAAGAAACTGAACCAT+TGG | 0.424571 | 3.3:+60579922 | MS.gene63291:CDS |
| AGCAAAATCAACAAGAGGCT+TGG | 0.428162 | 3.3:-60578732 | None:intergenic |
| ATTGGACCTGATGTTGCAAT+TGG | 0.435688 | 3.3:+60580577 | MS.gene63291:CDS |
| CAAGCCCATGATTCTGCATC+AGG | 0.436008 | 3.3:+60578757 | MS.gene63291:CDS |
| ATTGGGGACTGCAGGTCCCT+TGG | 0.442280 | 3.3:+60579940 | MS.gene63291:CDS |
| CCCCAAAATGTGAGGGCCAC+TGG | 0.444498 | 3.3:-60580509 | None:intergenic |
| GAATTTCTTGAAGGACTTTG+AGG | 0.444711 | 3.3:+60579874 | MS.gene63291:CDS |
| CCTGATGTTGCAATTGGTCC+TGG | 0.445714 | 3.3:+60580583 | MS.gene63291:CDS |
| CAGCCAAGGGACTATATAAC+AGG | 0.445775 | 3.3:+60580436 | MS.gene63291:CDS |
| GCCAGAGATAAGCTGATTGA+TGG | 0.448757 | 3.3:+60579968 | MS.gene63291:CDS |
| GTGAGGGCCACTGGCCAACT+TGG | 0.453022 | 3.3:-60580500 | None:intergenic |
| TAGCCTCACATGACTATCTC+TGG | 0.457298 | 3.3:-60580841 | None:intergenic |
| GTTGGCAACAAAATCAATGC+TGG | 0.457593 | 3.3:+60580274 | MS.gene63291:CDS |
| GCAAAATCAACAAGAGGCTT+GGG | 0.462216 | 3.3:-60578731 | None:intergenic |
| GTACTATTGAGTCAGGTGTC+AGG | 0.462789 | 3.3:+60580608 | MS.gene63291:CDS |
| CCTTACCTGATGCAGAATCA+TGG | 0.467053 | 3.3:-60578762 | None:intergenic |
| TCTCAAGAAACTGAACCATT+GGG | 0.467960 | 3.3:+60579923 | MS.gene63291:CDS |
| TTTGTTGCCAACAAACAACT+TGG | 0.477074 | 3.3:-60580263 | None:intergenic |
| ATTGGCGAGGGATGTCTCAT+TGG | 0.477910 | 3.3:+60580559 | MS.gene63291:CDS |
| AATTCTATCATTTCTTTGAG+TGG | 0.484489 | 3.3:-60580040 | None:intergenic |
| GGTGATGTTGAATTTCTTGA+AGG | 0.486495 | 3.3:+60579865 | MS.gene63291:intron |
| GCCATCAATCAGCTTATCTC+TGG | 0.487352 | 3.3:-60579969 | None:intergenic |
| GAGAAACCCAAGTTGTTTGT+TGG | 0.488405 | 3.3:+60580256 | MS.gene63291:CDS |
| TGCATATCCAGCAGCATCAT+CGG | 0.488487 | 3.3:+60580679 | MS.gene63291:CDS |
| CCTGGCTGTACTATTGAGTC+AGG | 0.491456 | 3.3:+60580601 | MS.gene63291:CDS |
| TTGGGAACGCTGAGTGTCAA+TGG | 0.493354 | 3.3:-60578713 | None:intergenic |
| ACCCACTTCTATTGAGAAAG+AGG | 0.506248 | 3.3:+60580342 | MS.gene63291:CDS |
| TGGAGGAGAAGCTTCCATAA+TGG | 0.508219 | 3.3:+60580075 | MS.gene63291:CDS |
| GCATATCCAGCAGCATCATC+GGG | 0.514239 | 3.3:+60580680 | MS.gene63291:CDS |
| TGGTTGGAGGGTTTGGAACA+AGG | 0.517924 | 3.3:+60578684 | MS.gene63291:CDS |
| GAGGGTTTGGAACAAGGTTG+AGG | 0.519056 | 3.3:+60578690 | MS.gene63291:CDS |
| ATGAAGGCATTGATTCTGGT+TGG | 0.520723 | 3.3:+60578668 | MS.gene63291:CDS |
| GAAGAAGACTTCTTCCAAGT+TGG | 0.520882 | 3.3:+60580486 | MS.gene63291:CDS |
| ATCGGGTGGCATTCAACTGT+TGG | 0.522221 | 3.3:+60580697 | MS.gene63291:CDS |
| CCTGGATTCTGGATGGACAT+TGG | 0.522294 | 3.3:+60580412 | MS.gene63291:CDS |
| ATAGAATTCCACAAATCTCA+TGG | 0.522477 | 3.3:+60580055 | MS.gene63291:CDS |
| CTATATGCAATGGTTCTGCC+TGG | 0.525369 | 3.3:+60580394 | MS.gene63291:CDS |
| AACAGGTCTGAGACTCTACC+TGG | 0.527965 | 3.3:+60580453 | MS.gene63291:CDS |
| CCAATGTCCATCCAGAATCC+AGG | 0.528298 | 3.3:-60580412 | None:intergenic |
| CCAGGACCAATTGCAACATC+AGG | 0.528530 | 3.3:-60580583 | None:intergenic |
| AACAAATTTCTCAACCTGCC+CGG | 0.528886 | 3.3:-60580233 | None:intergenic |
| ACTGAACCATTGGGGACTGC+AGG | 0.534135 | 3.3:+60579932 | MS.gene63291:CDS |
| AGACCTGTTATATAGTCCCT+TGG | 0.537146 | 3.3:-60580439 | None:intergenic |
| CTTATCTCTGGCAAGAGCCA+AGG | 0.538273 | 3.3:-60579957 | None:intergenic |
| ATGCCACCCGATGATGCTGC+TGG | 0.538528 | 3.3:-60580686 | None:intergenic |
| TGGAGTTACTGAAGTGGTGC+TGG | 0.539605 | 3.3:+60579719 | MS.gene63291:CDS |
| GCACTGTAATGAGAGGAGTT+CGG | 0.540270 | 3.3:+60580641 | MS.gene63291:CDS |
| CACCTCTTTCTCAATAGAAG+TGG | 0.543517 | 3.3:-60580344 | None:intergenic |
| TGTTGGTCAATGGGCTCGCG+TGG | 0.545394 | 3.3:+60580714 | MS.gene63291:CDS |
| AGGCATTGATTCTGGTTGGA+GGG | 0.546975 | 3.3:+60578672 | MS.gene63291:CDS |
| AAGGCATTGATTCTGGTTGG+AGG | 0.548820 | 3.3:+60578671 | MS.gene63291:CDS |
| TTGGCAACAAAATCAATGCT+GGG | 0.556088 | 3.3:+60580275 | MS.gene63291:CDS |
| GTGGAGAATATGACTATCCT+TGG | 0.561456 | 3.3:+60580733 | MS.gene63291:CDS |
| ATAGAGGCTCTTAAGGACAT+TGG | 0.566425 | 3.3:+60579699 | MS.gene63291:CDS |
| TCTTCTTCCTGAGTGAGTCC+AGG | 0.570610 | 3.3:-60580471 | None:intergenic |
| TTATCTCTGGCAAGAGCCAA+GGG | 0.571035 | 3.3:-60579956 | None:intergenic |
| TCAATATGATCCAAAACTGA+GGG | 0.571408 | 3.3:-60580313 | None:intergenic |
| GACTCTACCTGGACTCACTC+AGG | 0.571470 | 3.3:+60580464 | MS.gene63291:CDS |
| CTTACCTGATGCAGAATCAT+GGG | 0.572676 | 3.3:-60578761 | None:intergenic |
| ACCTCTTTCTCAATAGAAGT+GGG | 0.579545 | 3.3:-60580343 | None:intergenic |
| TATGGAAGAGACTACCGGGC+AGG | 0.580495 | 3.3:+60580219 | MS.gene63291:CDS |
| TTGTTGCCAACAAACAACTT+GGG | 0.582555 | 3.3:-60580262 | None:intergenic |
| GGTTCTGCCTGGATTCTGGA+TGG | 0.583086 | 3.3:+60580405 | MS.gene63291:CDS |
| ATCACATTCCCCAAAATGTG+AGG | 0.586656 | 3.3:-60580517 | None:intergenic |
| AGCTTCCATAATGGTGACAA+AGG | 0.594491 | 3.3:+60580084 | MS.gene63291:CDS |
| GGATGGACATTGGACAGCCA+AGG | 0.596026 | 3.3:+60580422 | MS.gene63291:CDS |
| TTCAATATGATCCAAAACTG+AGG | 0.607441 | 3.3:-60580314 | None:intergenic |
| GATGGACATTGGACAGCCAA+GGG | 0.607762 | 3.3:+60580423 | MS.gene63291:CDS |
| TCAAGTTGCACTGTAATGAG+AGG | 0.608923 | 3.3:+60580634 | MS.gene63291:CDS |
| AAGGGACCTGCAGTCCCCAA+TGG | 0.610136 | 3.3:-60579938 | None:intergenic |
| ACTTCTTCCAAGTTGGCCAG+TGG | 0.612092 | 3.3:+60580493 | MS.gene63291:CDS |
| GTTGTTATGGAAGAGACTAC+CGG | 0.612863 | 3.3:+60580214 | MS.gene63291:CDS |
| ACAACTACACCATATTTCGA+TGG | 0.616973 | 3.3:-60580196 | None:intergenic |
| TTGTTAGCAAAATCAACAAG+AGG | 0.621493 | 3.3:-60578737 | None:intergenic |
| TGAGACAGCCAAAATTGGCG+AGG | 0.624566 | 3.3:+60580546 | MS.gene63291:CDS |
| GCACAATCCATACCTCTGGT+TGG | 0.626350 | 3.3:-60579752 | None:intergenic |
| CCTGACTCAATAGTACAGCC+AGG | 0.628206 | 3.3:-60580601 | None:intergenic |
| ATACATGGACATCTTCTCCA+AGG | 0.629569 | 3.3:-60580750 | None:intergenic |
| CTCAAGAAACTGAACCATTG+GGG | 0.633701 | 3.3:+60579924 | MS.gene63291:CDS |
| TGTAAACTTCATCAGATACA+TGG | 0.633717 | 3.3:-60580765 | None:intergenic |
| TTGTTATGGAAGAGACTACC+GGG | 0.634181 | 3.3:+60580215 | MS.gene63291:CDS |
| TCTGATGAAGTTTACAGCAA+TGG | 0.634276 | 3.3:+60580772 | MS.gene63291:CDS |
| GAGACAGCCAAAATTGGCGA+GGG | 0.639601 | 3.3:+60580547 | MS.gene63291:CDS |
| GGACATTGGAGTTACTGAAG+TGG | 0.642199 | 3.3:+60579713 | MS.gene63291:CDS |
| TCACATTCCCCAAAATGTGA+GGG | 0.643108 | 3.3:-60580516 | None:intergenic |
| AGTTTACAGCAATGGTGGTG+TGG | 0.665559 | 3.3:+60580780 | MS.gene63291:CDS |
| GGCTATCAATTACCAACCAG+AGG | 0.681698 | 3.3:+60579740 | MS.gene63291:CDS |
| GATGAAGTTTACAGCAATGG+TGG | 0.691163 | 3.3:+60580775 | MS.gene63291:CDS |
| TATCCAGCAGCATCATCGGG+TGG | 0.692094 | 3.3:+60580683 | MS.gene63291:CDS |
| AATCCAGAGATAGTCATGTG+AGG | 0.703190 | 3.3:+60580838 | MS.gene63291:CDS |
| CAATATGATCCAAAACTGAG+GGG | 0.719526 | 3.3:-60580312 | None:intergenic |
| GAATTCCACAAATCTCATGG+AGG | 0.748000 | 3.3:+60580058 | MS.gene63291:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATACTTTGACATACTAAAA+TGG | - | chr3.3:60579091-60579110 | None:intergenic | 20.0% |
| !! | TATCTGCAAAACAAATTAAA+AGG | - | chr3.3:60579682-60579701 | None:intergenic | 20.0% |
| !!! | AAATCAACTTGTTGAAATTT+GGG | - | chr3.3:60579343-60579362 | None:intergenic | 20.0% |
| !!! | TAAATCAACTTGTTGAAATT+TGG | - | chr3.3:60579344-60579363 | None:intergenic | 20.0% |
| ! | AAACAAAAAGCTATATGCAA+TGG | + | chr3.3:60580384-60580403 | MS.gene63291:CDS | 25.0% |
| ! | AATTCAAGAAACTCAAGAAA+CGG | - | chr3.3:60578799-60578818 | None:intergenic | 25.0% |
| ! | AATTCTATCATTTCTTTGAG+TGG | - | chr3.3:60580043-60580062 | None:intergenic | 25.0% |
| ! | AGGGAGAAAATATAACATAT+AGG | - | chr3.3:60578876-60578895 | None:intergenic | 25.0% |
| ! | ATTAAAAGGAAAAACACATG+AGG | - | chr3.3:60579668-60579687 | None:intergenic | 25.0% |
| !! | ACAATTTTTCATATCCAACA+AGG | + | chr3.3:60579010-60579029 | MS.gene63291:intron | 25.0% |
| !!! | AATCAACTTGTTGAAATTTG+GGG | - | chr3.3:60579342-60579361 | None:intergenic | 25.0% |
| !!! | GTTTTAGGTTAATATAGTGT+GGG | + | chr3.3:60579401-60579420 | MS.gene63291:intron | 25.0% |
| !!! | TGTTTTAGGTTAATATAGTG+TGG | + | chr3.3:60579400-60579419 | MS.gene63291:intron | 25.0% |
| !!! | TTAATTTGTTTTGCAGATAG+AGG | + | chr3.3:60579683-60579702 | MS.gene63291:intron | 25.0% |
| AACCTAAAACACGTTAATGA+TGG | - | chr3.3:60579391-60579410 | None:intergenic | 30.0% | |
| AATTACCTTTGTCACCATTA+TGG | - | chr3.3:60580092-60580111 | None:intergenic | 30.0% | |
| ATAGAATTCCACAAATCTCA+TGG | + | chr3.3:60580055-60580074 | MS.gene63291:CDS | 30.0% | |
| ATGGTGACAAAGGTAATTAA+CGG | + | chr3.3:60580094-60580113 | MS.gene63291:intron | 30.0% | |
| ATTCAAGAAACTCAAGAAAC+GGG | - | chr3.3:60578798-60578817 | None:intergenic | 30.0% | |
| CTTGAGAAGAGTTTATAAAG+AGG | + | chr3.3:60579271-60579290 | MS.gene63291:intron | 30.0% | |
| GAAATATGGTGTAGTTGTTA+TGG | + | chr3.3:60580201-60580220 | MS.gene63291:CDS | 30.0% | |
| TCAATATGATCCAAAACTGA+GGG | - | chr3.3:60580316-60580335 | None:intergenic | 30.0% | |
| TGGATATGAAAAATTGTTGC+AGG | - | chr3.3:60579007-60579026 | None:intergenic | 30.0% | |
| TGTAAACTTCATCAGATACA+TGG | - | chr3.3:60580768-60580787 | None:intergenic | 30.0% | |
| TTCAATATGATCCAAAACTG+AGG | - | chr3.3:60580317-60580336 | None:intergenic | 30.0% | |
| TTGTTAGCAAAATCAACAAG+AGG | - | chr3.3:60578740-60578759 | None:intergenic | 30.0% | |
| ! | ATTTTCTGAATGAGTTGTGT+TGG | + | chr3.3:60579112-60579131 | MS.gene63291:intron | 30.0% |
| !! | ACAATTTTTCGCACTTTTTG+AGG | - | chr3.3:60579464-60579483 | None:intergenic | 30.0% |
| !! | TTTTTGTTTGCTGCAATCTT+TGG | - | chr3.3:60580373-60580392 | None:intergenic | 30.0% |
| AATTCAACATCACCTACAAG+AGG | - | chr3.3:60579859-60579878 | None:intergenic | 35.0% | |
| ACAACTACACCATATTTCGA+TGG | - | chr3.3:60580199-60580218 | None:intergenic | 35.0% | |
| ACCTCTTTCTCAATAGAAGT+GGG | - | chr3.3:60580346-60580365 | None:intergenic | 35.0% | |
| CAATATGATCCAAAACTGAG+GGG | - | chr3.3:60580315-60580334 | None:intergenic | 35.0% | |
| CTAAAACACGTTAATGATGG+AGG | - | chr3.3:60579388-60579407 | None:intergenic | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | - | chr3.3:60579318-60579337 | None:intergenic | 35.0% | |
| GAATTTCTTGAAGGACTTTG+AGG | + | chr3.3:60579874-60579893 | MS.gene63291:CDS | 35.0% | |
| GAGAAGAGTTTATAAAGAGG+AGG | + | chr3.3:60579274-60579293 | MS.gene63291:intron | 35.0% | |
| GCAAGATATTTCAGCAGAAT+GGG | + | chr3.3:60578950-60578969 | MS.gene63291:intron | 35.0% | |
| GGTGATGTTGAATTTCTTGA+AGG | + | chr3.3:60579865-60579884 | MS.gene63291:intron | 35.0% | |
| TCGCTGTTGAGAACAAAAAA+TGG | - | chr3.3:60580004-60580023 | None:intergenic | 35.0% | |
| TCTCAAGAAACTGAACCATT+GGG | + | chr3.3:60579923-60579942 | MS.gene63291:CDS | 35.0% | |
| TCTGATGAAGTTTACAGCAA+TGG | + | chr3.3:60580772-60580791 | MS.gene63291:CDS | 35.0% | |
| TGCAAGATATTTCAGCAGAA+TGG | + | chr3.3:60578949-60578968 | MS.gene63291:intron | 35.0% | |
| TTCAAGAAACTCAAGAAACG+GGG | - | chr3.3:60578797-60578816 | None:intergenic | 35.0% | |
| TTCATTGAGAATGACTGACA+CGG | - | chr3.3:60579792-60579811 | None:intergenic | 35.0% | |
| TTGGCAACAAAATCAATGCT+GGG | + | chr3.3:60580275-60580294 | MS.gene63291:CDS | 35.0% | |
| TTGTTGCCAACAAACAACTT+GGG | - | chr3.3:60580265-60580284 | None:intergenic | 35.0% | |
| TTTGTTGCCAACAAACAACT+TGG | - | chr3.3:60580266-60580285 | None:intergenic | 35.0% | |
| ! | CTCCATCATTAACGTGTTTT+AGG | + | chr3.3:60579386-60579405 | MS.gene63291:intron | 35.0% |
| !! | TTTCGCACTTTTTGAGGAAA+GGG | - | chr3.3:60579458-60579477 | None:intergenic | 35.0% |
| !! | TTTTCGCACTTTTTGAGGAA+AGG | - | chr3.3:60579459-60579478 | None:intergenic | 35.0% |
| !!! | CTTGTTTTGATTTCCTTGTG+GGG | - | chr3.3:60580811-60580830 | None:intergenic | 35.0% |
| !!! | GCTTGTTTTGATTTCCTTGT+GGG | - | chr3.3:60580812-60580831 | None:intergenic | 35.0% |
| !!! | TGCTTGTTTTGATTTCCTTG+TGG | - | chr3.3:60580813-60580832 | None:intergenic | 35.0% |
| AAACCATCTCTGATTTACCC+AGG | - | chr3.3:60578840-60578859 | None:intergenic | 40.0% | |
| AACAAATTTCTCAACCTGCC+CGG | - | chr3.3:60580236-60580255 | None:intergenic | 40.0% | |
| AATCCAGCAAGATTCAACGT+TGG | - | chr3.3:60579042-60579061 | None:intergenic | 40.0% | |
| ACCCACTTCTATTGAGAAAG+AGG | + | chr3.3:60580342-60580361 | MS.gene63291:CDS | 40.0% | |
| AGACCTGTTATATAGTCCCT+TGG | - | chr3.3:60580442-60580461 | None:intergenic | 40.0% | |
| AGCAAAATCAACAAGAGGCT+TGG | - | chr3.3:60578735-60578754 | None:intergenic | 40.0% | |
| AGCTTCCATAATGGTGACAA+AGG | + | chr3.3:60580084-60580103 | MS.gene63291:CDS | 40.0% | |
| AGGAAAAACACATGAGGTGA+TGG | - | chr3.3:60579662-60579681 | None:intergenic | 40.0% | |
| ATACATGGACATCTTCTCCA+AGG | - | chr3.3:60580753-60580772 | None:intergenic | 40.0% | |
| ATAGAGGCTCTTAAGGACAT+TGG | + | chr3.3:60579699-60579718 | MS.gene63291:CDS | 40.0% | |
| ATCACATTCCCCAAAATGTG+AGG | - | chr3.3:60580520-60580539 | None:intergenic | 40.0% | |
| ATCTACTCACAGACAGCAAA+GGG | - | chr3.3:60579572-60579591 | None:intergenic | 40.0% | |
| ATTGGACCTGATGTTGCAAT+TGG | + | chr3.3:60580577-60580596 | MS.gene63291:CDS | 40.0% | |
| CACCTCTTTCTCAATAGAAG+TGG | - | chr3.3:60580347-60580366 | None:intergenic | 40.0% | |
| CTAACCAAAGGTCGCAATTT+AGG | - | chr3.3:60579172-60579191 | None:intergenic | 40.0% | |
| CTCAAGAAACTGAACCATTG+GGG | + | chr3.3:60579924-60579943 | MS.gene63291:CDS | 40.0% | |
| CTCTCAAGAAACTGAACCAT+TGG | + | chr3.3:60579922-60579941 | MS.gene63291:CDS | 40.0% | |
| CTTACCTGATGCAGAATCAT+GGG | - | chr3.3:60578764-60578783 | None:intergenic | 40.0% | |
| GAAGAAGACTTCTTCCAAGT+TGG | + | chr3.3:60580486-60580505 | MS.gene63291:CDS | 40.0% | |
| GAATTCCACAAATCTCATGG+AGG | + | chr3.3:60580058-60580077 | MS.gene63291:CDS | 40.0% | |
| GAGAAACCCAAGTTGTTTGT+TGG | + | chr3.3:60580256-60580275 | MS.gene63291:CDS | 40.0% | |
| GAGTACTATCTATCCGATGT+GGG | - | chr3.3:60579252-60579271 | None:intergenic | 40.0% | |
| GATGAAGTTTACAGCAATGG+TGG | + | chr3.3:60580775-60580794 | MS.gene63291:CDS | 40.0% | |
| GCAAAATCAACAAGAGGCTT+GGG | - | chr3.3:60578734-60578753 | None:intergenic | 40.0% | |
| GCATTCAACTGTTGGTCAAT+GGG | + | chr3.3:60580705-60580724 | MS.gene63291:CDS | 40.0% | |
| GTGGAGAATATGACTATCCT+TGG | + | chr3.3:60580733-60580752 | MS.gene63291:CDS | 40.0% | |
| GTTGGCAACAAAATCAATGC+TGG | + | chr3.3:60580274-60580293 | MS.gene63291:CDS | 40.0% | |
| GTTGTTATGGAAGAGACTAC+CGG | + | chr3.3:60580214-60580233 | MS.gene63291:CDS | 40.0% | |
| TCAATTACCAACCAGAGGTA+TGG | + | chr3.3:60579745-60579764 | MS.gene63291:intron | 40.0% | |
| TCACATTCCCCAAAATGTGA+GGG | - | chr3.3:60580519-60580538 | None:intergenic | 40.0% | |
| TCTCAAAGCCAACACAATGA+AGG | - | chr3.3:60579216-60579235 | None:intergenic | 40.0% | |
| TGGAAATTCCGCCTTAATTG+CGG | + | chr3.3:60579132-60579151 | MS.gene63291:intron | 40.0% | |
| TTACGATTGCTATGCTACCT+GGG | + | chr3.3:60578820-60578839 | MS.gene63291:intron | 40.0% | |
| TTGTGAACACTTCCTCTTGT+AGG | + | chr3.3:60579844-60579863 | MS.gene63291:intron | 40.0% | |
| TTGTTATGGAAGAGACTACC+GGG | + | chr3.3:60580215-60580234 | MS.gene63291:CDS | 40.0% | |
| TTTGCAGATAGAGGCTCTTA+AGG | + | chr3.3:60579692-60579711 | MS.gene63291:intron | 40.0% | |
| ! | AGAGTACTATCTATCCGATG+TGG | - | chr3.3:60579253-60579272 | None:intergenic | 40.0% |
| ! | CTGACTGACTCATGATATCA+GGG | - | chr3.3:60578895-60578914 | None:intergenic | 40.0% |
| ! | TCAAGTTGCACTGTAATGAG+AGG | + | chr3.3:60580634-60580653 | MS.gene63291:CDS | 40.0% |
| ! | TCTGACTGACTCATGATATC+AGG | - | chr3.3:60578896-60578915 | None:intergenic | 40.0% |
| ! | TGTTTTACATCTGCTTGTGC+AGG | + | chr3.3:60580165-60580184 | MS.gene63291:intron | 40.0% |
| !! | ATGAAGGCATTGATTCTGGT+TGG | + | chr3.3:60578668-60578687 | MS.gene63291:CDS | 40.0% |
| !! | TCATTGTGTTGGCTTTGAGA+GGG | + | chr3.3:60579216-60579235 | MS.gene63291:intron | 40.0% |
| !! | TTCATTGTGTTGGCTTTGAG+AGG | + | chr3.3:60579215-60579234 | MS.gene63291:intron | 40.0% |
| !! | TTCGCACTTTTTGAGGAAAG+GGG | - | chr3.3:60579457-60579476 | None:intergenic | 40.0% |
| CAACCAACGTTGAATCTTGC+TGG | + | chr3.3:60579036-60579055 | MS.gene63291:intron | 45.0% | |
| CAGCCAAGGGACTATATAAC+AGG | + | chr3.3:60580436-60580455 | MS.gene63291:CDS | 45.0% | |
| CATCTACTCACAGACAGCAA+AGG | - | chr3.3:60579573-60579592 | None:intergenic | 45.0% | |
| CCAAAACTGAGGGGTTCAAT+AGG | - | chr3.3:60580306-60580325 | None:intergenic | 45.0% | |
| CCATGATTCTGCATCAGGTA+AGG | + | chr3.3:60578762-60578781 | MS.gene63291:intron | 45.0% | |
| CCTTACCTGATGCAGAATCA+TGG | - | chr3.3:60578765-60578784 | None:intergenic | 45.0% | |
| CTACCTGGGTAAATCAGAGA+TGG | + | chr3.3:60578834-60578853 | MS.gene63291:intron | 45.0% | |
| CTCCAACACCTTCATTGTGT+TGG | + | chr3.3:60579205-60579224 | MS.gene63291:intron | 45.0% | |
| CTGCAATGAAGGCTAACCAA+AGG | - | chr3.3:60579184-60579203 | None:intergenic | 45.0% | |
| CTTACGATTGCTATGCTACC+TGG | + | chr3.3:60578819-60578838 | MS.gene63291:intron | 45.0% | |
| CTTCTCCTCCATGAGATTTG+TGG | - | chr3.3:60580066-60580085 | None:intergenic | 45.0% | |
| GCACTGTAATGAGAGGAGTT+CGG | + | chr3.3:60580641-60580660 | MS.gene63291:CDS | 45.0% | |
| GCCAGAGATAAGCTGATTGA+TGG | + | chr3.3:60579968-60579987 | MS.gene63291:CDS | 45.0% | |
| GCCATCAATCAGCTTATCTC+TGG | - | chr3.3:60579972-60579991 | None:intergenic | 45.0% | |
| GCTGGATTCTGTCAAAACTC+TGG | + | chr3.3:60579054-60579073 | MS.gene63291:intron | 45.0% | |
| GGACATTGGAGTTACTGAAG+TGG | + | chr3.3:60579713-60579732 | MS.gene63291:CDS | 45.0% | |
| GGCATTCAACTGTTGGTCAA+TGG | + | chr3.3:60580704-60580723 | MS.gene63291:CDS | 45.0% | |
| GGCTATCAATTACCAACCAG+AGG | + | chr3.3:60579740-60579759 | MS.gene63291:CDS | 45.0% | |
| GTACTATTGAGTCAGGTGTC+AGG | + | chr3.3:60580608-60580627 | MS.gene63291:CDS | 45.0% | |
| GTGCATGAGACAGCCAAAAT+TGG | + | chr3.3:60580541-60580560 | MS.gene63291:CDS | 45.0% | |
| GTTGACGAGCCATCGAAATA+TGG | + | chr3.3:60580187-60580206 | MS.gene63291:CDS | 45.0% | |
| TGACACGGTTAGGAAAAGAG+AGG | - | chr3.3:60579777-60579796 | None:intergenic | 45.0% | |
| TGAGAATGACTGACACGGTT+AGG | - | chr3.3:60579787-60579806 | None:intergenic | 45.0% | |
| TGCATATCCAGCAGCATCAT+CGG | + | chr3.3:60580679-60580698 | MS.gene63291:CDS | 45.0% | |
| TGGAGGAGAAGCTTCCATAA+TGG | + | chr3.3:60580075-60580094 | MS.gene63291:CDS | 45.0% | |
| TTATCTCTGGCAAGAGCCAA+GGG | - | chr3.3:60579959-60579978 | None:intergenic | 45.0% | |
| TTGCTGTCTGTGAGTAGATG+CGG | + | chr3.3:60579573-60579592 | MS.gene63291:intron | 45.0% | |
| TTGTTCTTGCTTGCGTGAGA+AGG | + | chr3.3:60579480-60579499 | MS.gene63291:intron | 45.0% | |
| ! | AACGTTGGTTGTTGCCTTGT+TGG | - | chr3.3:60579027-60579046 | None:intergenic | 45.0% |
| ! | AGCCAACACAATGAAGGTGT+TGG | - | chr3.3:60579210-60579229 | None:intergenic | 45.0% |
| ! | AGTTTACAGCAATGGTGGTG+TGG | + | chr3.3:60580780-60580799 | MS.gene63291:CDS | 45.0% |
| ! | CCTATTGAACCCCTCAGTTT+TGG | + | chr3.3:60580303-60580322 | MS.gene63291:CDS | 45.0% |
| ! | CTATATGCAATGGTTCTGCC+TGG | + | chr3.3:60580394-60580413 | MS.gene63291:CDS | 45.0% |
| ! | TTGATTCTGGTTGGAGGGTT+TGG | + | chr3.3:60578677-60578696 | MS.gene63291:CDS | 45.0% |
| !! | AAGGCATTGATTCTGGTTGG+AGG | + | chr3.3:60578671-60578690 | MS.gene63291:CDS | 45.0% |
| !! | AGGCATTGATTCTGGTTGGA+GGG | + | chr3.3:60578672-60578691 | MS.gene63291:CDS | 45.0% |
| !! | CAACACAATGAAGGTGTTGG+AGG | - | chr3.3:60579207-60579226 | None:intergenic | 45.0% |
| !! | CCTTACAAAACCGGCTTGTA+AGG | - | chr3.3:60579309-60579328 | None:intergenic | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | + | chr3.3:60579306-60579325 | MS.gene63291:intron | 45.0% |
| !! | TCGCACTTTTTGAGGAAAGG+GGG | - | chr3.3:60579456-60579475 | None:intergenic | 45.0% |
| AGGTCGCAATTTAGGCGACT+AGG | - | chr3.3:60579164-60579183 | None:intergenic | 50.0% | |
| ATCGGGTGGCATTCAACTGT+TGG | + | chr3.3:60580697-60580716 | MS.gene63291:CDS | 50.0% | |
| ATTGGCGAGGGATGTCTCAT+TGG | + | chr3.3:60580559-60580578 | MS.gene63291:CDS | 50.0% | |
| CAAGCCCATGATTCTGCATC+AGG | + | chr3.3:60578757-60578776 | MS.gene63291:CDS | 50.0% | |
| CACAGACAGCAAAGGGATGA+TGG | - | chr3.3:60579565-60579584 | None:intergenic | 50.0% | |
| CCAATGTCCATCCAGAATCC+AGG | - | chr3.3:60580415-60580434 | None:intergenic | 50.0% | |
| CCAGGACCAATTGCAACATC+AGG | - | chr3.3:60580586-60580605 | None:intergenic | 50.0% | |
| CCTGACTCAATAGTACAGCC+AGG | - | chr3.3:60580604-60580623 | None:intergenic | 50.0% | |
| CCTGATGTTGCAATTGGTCC+TGG | + | chr3.3:60580583-60580602 | MS.gene63291:CDS | 50.0% | |
| CCTGGATTCTGGATGGACAT+TGG | + | chr3.3:60580412-60580431 | MS.gene63291:CDS | 50.0% | |
| CCTGGCTGTACTATTGAGTC+AGG | + | chr3.3:60580601-60580620 | MS.gene63291:CDS | 50.0% | |
| CTTATCTCTGGCAAGAGCCA+AGG | - | chr3.3:60579960-60579979 | None:intergenic | 50.0% | |
| GAGACAGCCAAAATTGGCGA+GGG | + | chr3.3:60580547-60580566 | MS.gene63291:CDS | 50.0% | |
| GATGGACATTGGACAGCCAA+GGG | + | chr3.3:60580423-60580442 | MS.gene63291:CDS | 50.0% | |
| GCACAATCCATACCTCTGGT+TGG | - | chr3.3:60579755-60579774 | None:intergenic | 50.0% | |
| GCATATCCAGCAGCATCATC+GGG | + | chr3.3:60580680-60580699 | MS.gene63291:CDS | 50.0% | |
| GGTCGCAATTTAGGCGACTA+GGG | - | chr3.3:60579163-60579182 | None:intergenic | 50.0% | |
| GTCGCAATTTAGGCGACTAG+GGG | - | chr3.3:60579162-60579181 | None:intergenic | 50.0% | |
| GTCGCCTAAATTGCGACCTT+TGG | + | chr3.3:60579165-60579184 | MS.gene63291:intron | 50.0% | |
| TCTTCTTCCTGAGTGAGTCC+AGG | - | chr3.3:60580474-60580493 | None:intergenic | 50.0% | |
| TGAGACAGCCAAAATTGGCG+AGG | + | chr3.3:60580546-60580565 | MS.gene63291:CDS | 50.0% | |
| TGCTGTCTGTGAGTAGATGC+GGG | + | chr3.3:60579574-60579593 | MS.gene63291:intron | 50.0% | |
| TGGAGTTACTGAAGTGGTGC+TGG | + | chr3.3:60579719-60579738 | MS.gene63291:CDS | 50.0% | |
| TTGGGAACGCTGAGTGTCAA+TGG | - | chr3.3:60578716-60578735 | None:intergenic | 50.0% | |
| ! | AACAGGTCTGAGACTCTACC+TGG | + | chr3.3:60580453-60580472 | MS.gene63291:CDS | 50.0% |
| ! | ACTTCTTCCAAGTTGGCCAG+TGG | + | chr3.3:60580493-60580512 | MS.gene63291:CDS | 50.0% |
| ! | AGAGGCACAATCCATACCTC+TGG | - | chr3.3:60579759-60579778 | None:intergenic | 50.0% |
| ! | CAATGGTTCTGCCTGGATTC+TGG | + | chr3.3:60580401-60580420 | MS.gene63291:CDS | 50.0% |
| ! | GAGACATCCCTCGCCAATTT+TGG | - | chr3.3:60580557-60580576 | None:intergenic | 50.0% |
| ! | GAGGGTTTGGAACAAGGTTG+AGG | + | chr3.3:60578690-60578709 | MS.gene63291:CDS | 50.0% |
| ! | GGGTGGATTTAGTCCCACAT+CGG | + | chr3.3:60579236-60579255 | MS.gene63291:intron | 50.0% |
| ! | TGGTTGGAGGGTTTGGAACA+AGG | + | chr3.3:60578684-60578703 | MS.gene63291:CDS | 50.0% |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | - | chr3.3:60579304-60579323 | None:intergenic | 50.0% |
| !! | GACAGCAAAGGGATGATGGA+AGG | - | chr3.3:60579561-60579580 | None:intergenic | 50.0% |
| !! | TTGTGTTGGCTTTGAGAGGG+TGG | + | chr3.3:60579219-60579238 | MS.gene63291:intron | 50.0% |
| ACTGAACCATTGGGGACTGC+AGG | + | chr3.3:60579932-60579951 | MS.gene63291:CDS | 55.0% | |
| CTAGGGGCAGACCGCAATTA+AGG | - | chr3.3:60579146-60579165 | None:intergenic | 55.0% | |
| GACTCTACCTGGACTCACTC+AGG | + | chr3.3:60580464-60580483 | MS.gene63291:CDS | 55.0% | |
| GCACTCCTCACCTTACAAGC+CGG | + | chr3.3:60579296-60579315 | MS.gene63291:intron | 55.0% | |
| GGATGGACATTGGACAGCCA+AGG | + | chr3.3:60580422-60580441 | MS.gene63291:CDS | 55.0% | |
| GGTTCTGCCTGGATTCTGGA+TGG | + | chr3.3:60580405-60580424 | MS.gene63291:CDS | 55.0% | |
| TATCCAGCAGCATCATCGGG+TGG | + | chr3.3:60580683-60580702 | MS.gene63291:CDS | 55.0% | |
| TATGGAAGAGACTACCGGGC+AGG | + | chr3.3:60580219-60580238 | MS.gene63291:CDS | 55.0% | |
| ! | CCAGTGGCCCTCACATTTTG+GGG | + | chr3.3:60580509-60580528 | MS.gene63291:CDS | 55.0% |
| ! | GCCAGTGGCCCTCACATTTT+GGG | + | chr3.3:60580508-60580527 | MS.gene63291:CDS | 55.0% |
| ! | GGTGTTGGAGGCTGCAATGA+AGG | - | chr3.3:60579195-60579214 | None:intergenic | 55.0% |
| !! | TGGTGTGGTTTTGCCCCACA+AGG | + | chr3.3:60580795-60580814 | MS.gene63291:CDS | 55.0% |
| AAGGGACCTGCAGTCCCCAA+TGG | - | chr3.3:60579941-60579960 | None:intergenic | 60.0% | |
| ATGCCACCCGATGATGCTGC+TGG | - | chr3.3:60580689-60580708 | None:intergenic | 60.0% | |
| ATTGGGGACTGCAGGTCCCT+TGG | + | chr3.3:60579940-60579959 | MS.gene63291:CDS | 60.0% | |
| CCCCAAAATGTGAGGGCCAC+TGG | - | chr3.3:60580512-60580531 | None:intergenic | 60.0% | |
| GGGGCAGACCGCAATTAAGG+CGG | - | chr3.3:60579143-60579162 | None:intergenic | 60.0% | |
| ! | GGCCAGTGGCCCTCACATTT+TGG | + | chr3.3:60580507-60580526 | MS.gene63291:CDS | 60.0% |
| ! | TGTTGGTCAATGGGCTCGCG+TGG | + | chr3.3:60580714-60580733 | MS.gene63291:CDS | 60.0% |
| GTGAGGGCCACTGGCCAACT+TGG | - | chr3.3:60580503-60580522 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 60578668 | 60580858 | 60578668 | ID=MS.gene63291 |
| chr3.3 | mRNA | 60578668 | 60580858 | 60578668 | ID=MS.gene63291.t1;Parent=MS.gene63291 |
| chr3.3 | exon | 60578668 | 60578778 | 60578668 | ID=MS.gene63291.t1.exon1;Parent=MS.gene63291.t1 |
| chr3.3 | CDS | 60578668 | 60578778 | 60578668 | ID=cds.MS.gene63291.t1;Parent=MS.gene63291.t1 |
| chr3.3 | exon | 60579699 | 60579761 | 60579699 | ID=MS.gene63291.t1.exon2;Parent=MS.gene63291.t1 |
| chr3.3 | CDS | 60579699 | 60579761 | 60579699 | ID=cds.MS.gene63291.t1;Parent=MS.gene63291.t1 |
| chr3.3 | exon | 60579866 | 60580105 | 60579866 | ID=MS.gene63291.t1.exon3;Parent=MS.gene63291.t1 |
| chr3.3 | CDS | 60579866 | 60580105 | 60579866 | ID=cds.MS.gene63291.t1;Parent=MS.gene63291.t1 |
| chr3.3 | exon | 60580187 | 60580858 | 60580187 | ID=MS.gene63291.t1.exon4;Parent=MS.gene63291.t1 |
| chr3.3 | CDS | 60580187 | 60580858 | 60580187 | ID=cds.MS.gene63291.t1;Parent=MS.gene63291.t1 |
| Gene Sequence |
| Protein sequence |
